Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 278 of 292
Found at i:80068479 original size:12 final size:12
Alignment explanation
Indices: 80068462--80068489 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
80068452 CGGGGAAGAC
80068462 GCCGTGGTCGAG
1 GCCGTGGTCGAG
80068474 GCCGTGGTCGAG
1 GCCGTGGTCGAG
80068486 GCCG
1 GCCG
80068490 AGGTAGTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.29, G:0.50, T:0.14
Consensus pattern (12 bp):
GCCGTGGTCGAG
Found at i:80073345 original size:32 final size:32
Alignment explanation
Indices: 80073309--80073373 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
80073299 TGCATGCATT
80073309 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
80073341 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
80073373 T
1 T
80073374 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:80074885 original size:26 final size:26
Alignment explanation
Indices: 80074855--80074907 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
80074845 TTTATAGTTT
80074855 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
80074881 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
80074907 T
1 T
80074908 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:80079012 original size:53 final size:52
Alignment explanation
Indices: 80078915--80079018 Score: 145
Period size: 53 Copynumber: 2.0 Consensus size: 52
80078905 GTCCAAATAA
* * * *
80078915 ATTTTCTTCTTATTGCATTGCTATCTTTGATTAAATCATTCGTTTTGAGTTG
1 ATTTCCTTCTTATTGCATTGCAATCTTTGATTAAATCATCCGTTTCGAGTTG
* *
80078967 ATTTCCTTCTTATTGCATTTGCAATCTTTGATTAATTTATCCGTTTCGAGTT
1 ATTTCCTTCTTATTGCA-TTGCAATCTTTGATTAAATCATCCGTTTCGAGTT
80079019 ATGCTCCTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
52 16 0.36
53 29 0.64
ACGTcount: A:0.19, C:0.15, G:0.12, T:0.53
Consensus pattern (52 bp):
ATTTCCTTCTTATTGCATTGCAATCTTTGATTAAATCATCCGTTTCGAGTTG
Found at i:80080279 original size:205 final size:205
Alignment explanation
Indices: 80079921--80080400 Score: 696
Period size: 205 Copynumber: 2.3 Consensus size: 205
80079911 TGGAGAGTAG
* * *
80079921 ATCGAAGACATAGCTGATTTGGCTTTCATGTGTTTATGTTGAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGCA
80079986 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACGGAAGGCAAACACATA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACGGAAGGCAAACACATA
* * * *
80080051 GCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
131 ACAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTGTGCTTA
*
80080116 CAATGAGCAA
196 CAAGGAGCAA
* * *
80080126 ATCGAAGACATAACTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATTTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGCA
* * * * * *
80080191 TCTCTGTATTGTCAGATAACAAATTGAAGTCTGGCATCTCCACTTCGA-TGAAGGGTAGACACAT
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACGGAA-GGCAAACACAT
*
80080255 AACAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTGTGTTT
130 AACAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTGTGCTT
80080320 ACAAGGAGCAA
195 ACAAGGAGCAA
* * * * *
80080331 A-CTGAAGACATAGTTGATTTCGCTTTTACGTGTTTACGTTGAAA-CAAATCCAAGATAATTTGG
1 ATC-GAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTT-AAAGCAAATCTAAGATGATTTGG
*
80080394 CGTCTCT
64 CATCTCT
80080401 ATAGCGGCGG
Statistics
Matches: 245, Mismatches: 27, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
204 4 0.02
205 238 0.97
206 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACGGAAGGCAAACACATA
ACAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTGTGCTTA
CAAGGAGCAA
Found at i:80080527 original size:44 final size:44
Alignment explanation
Indices: 80080412--80081259 Score: 656
Period size: 44 Copynumber: 19.3 Consensus size: 44
80080402 TAGCGGCGGA
* * * * *
80080412 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTG
1 GAACAGATCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAG-G
* * ** *
80080457 AAACAGATCGAAGATTTCAG-TATGGCATCCCTGTGCTTATAGG
1 GAACAGATCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* * *
80080500 GAACA-AGTTGAAAACAGCAAATTTGGCATCCCTGTGCTTATAGG
1 GAACAGA-TCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* * * * * *
80080544 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
1 GAACAGATCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* **
80080588 GAAGCAGATCGAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGG
1 GAA-CAGATCGAAAATAGCAG-ATTTGGCATCCCTGTGCTTATAGG
* * *
80080632 GAACA-AGTTGAAGATAGCAGATTTGGCATCCCTGCGCTTATAGG
1 GAACAGA-TCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* * * * * *
80080676 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
1 GAACAGATCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* **
80080720 GAAGCAGATCGAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGG
1 GAA-CAGATCGAAAATAGCAG-ATTTGGCATCCCTGTGCTTATAGG
* *
80080764 GAACA-AGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGG
1 GAACAGA-TCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* * * * *
80080808 GAACAGATC-AAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
1 GAACAGATCGAAA-ATAGCAGATTTGGCATCCCTGTGCTTATAGG
* ** *
80080852 GAAGCAGATCGAAGATTTCAGCA--TGGCATCCCTGTGCTTATAAG
1 GAA-CAGATCGAAAATAGCAG-ATTTGGCATCCCTGTGCTTATAGG
* * *
80080896 GAACA-AGTTGAATATAGCAGATTTGGCATCCCTGTGCTTATAAG
1 GAACAGA-TCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* * * * * *
80080940 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
1 GAACAGATCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* ***
80080984 GAAGCAGATCGAAGATTTTAGCA--TGGCATCCCTGTGCTTATAGG
1 GAA-CAGATCGAAAATAGCAG-ATTTGGCATCCCTGTGCTTATAGG
* * * *
80081028 GAACA-AGTTGAAAACAACAGATTTGGCATCCCTATGCTTATAGG
1 GAACAGA-TCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* * * * * *
80081072 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
1 GAACAGATCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* ** *
80081116 GAAGCAGATCGAAGATTTCAGCA--TGACAT-CCTGTGCTTATAGG
1 GAA-CAGATCGAAAATAGCAG-ATTTGGCATCCCTGTGCTTATAGG
* *
80081159 GAACA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
1 GAACAGA-TCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
* * * * * *
80081203 AAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTA-CGG
1 GAACAGATCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
80081246 TGAAGCAGATCGAA
1 -GAA-CAGATCGAA
80081260 GAAATAGGGA
Statistics
Matches: 645, Mismatches: 120, Indels: 76
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.00
42 19 0.03
43 80 0.12
44 435 0.67
45 102 0.16
46 7 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (44 bp):
GAACAGATCGAAAATAGCAGATTTGGCATCCCTGTGCTTATAGG
Found at i:80080571 original size:132 final size:132
Alignment explanation
Indices: 80080412--80081261 Score: 1522
Period size: 132 Copynumber: 6.4 Consensus size: 132
80080402 TAGCGGCGGA
*
80080412 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAACAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* *
80080477 TATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAAATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
80080542 GG
131 GG
80080544 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* * *
80080609 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGCGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
80080674 GG
131 GG
80080676 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* *
80080741 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
80080806 GG
131 GG
*
80080808 GAACAGATCAAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* * *
80080873 CATGGCATCCCTGTGCTTATAAGGAACAAGTTGAATATAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
*
80080938 AG
131 GG
*
80080940 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTTAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* *
80081005 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTATGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
80081070 GG
131 GG
80081072 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
*
80081137 CATGACAT-CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
80081201 GG
131 GG
* *
80081203 AAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACGGTGAAGCAGATCGAAGA
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGA
80081262 AATAGGGAAC
Statistics
Matches: 693, Mismatches: 25, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
131 113 0.16
132 580 0.84
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (132 bp):
GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
GG
Found at i:80081335 original size:44 final size:44
Alignment explanation
Indices: 80081263--80081360 Score: 153
Period size: 44 Copynumber: 2.2 Consensus size: 44
80081253 GATCGAAGAA
* * *
80081263 ATAGGGAACAAGTTGAAGATAGCGGATTTGGCATCTCTGTGTTT
1 ATAGGGAACAAGTTGAAGACAGCAGATTTGGCATCCCTGTGTTT
80081307 ATAGGGAACAAGTTGAAGACAGCAGATTTGGCATCCCTGTGTTT
1 ATAGGGAACAAGTTGAAGACAGCAGATTTGGCATCCCTGTGTTT
80081351 AT-GAGGAACA
1 ATAG-GGAACA
80081361 GATCGAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
43 1 0.02
44 49 0.98
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.28
Consensus pattern (44 bp):
ATAGGGAACAAGTTGAAGACAGCAGATTTGGCATCCCTGTGTTT
Found at i:80081646 original size:13 final size:13
Alignment explanation
Indices: 80081628--80081695 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 13
80081618 AAATATCTTT
80081628 ACTCCACTAAACC
1 ACTCCACTAAACC
* **
80081641 ACTCCAACCACTCC
1 ACTCC-ACTAAACC
* *
80081655 A-ACCACTCCAACC
1 ACTCCACT-AAACC
*
80081668 ACTTCACTAAACC
1 ACTCCACTAAACC
80081681 ACTCCACTAAACC
1 ACTCCACTAAACC
80081694 AC
1 AC
80081696 CCCAACCACT
Statistics
Matches: 40, Mismatches: 12, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
12 2 0.05
13 28 0.70
14 10 0.25
ACGTcount: A:0.37, C:0.49, G:0.00, T:0.15
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:80081651 original size:9 final size:9
Alignment explanation
Indices: 80081637--80081670 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
80081627 TACTCCACTA
80081637 AACCACTCC
1 AACCACTCC
80081646 AACCACTCC
1 AACCACTCC
80081655 AACCACTCC
1 AACCACTCC
80081664 AACCACT
1 AACCACT
80081671 TCACTAAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.35, C:0.53, G:0.00, T:0.12
Consensus pattern (9 bp):
AACCACTCC
Found at i:80082116 original size:3 final size:3
Alignment explanation
Indices: 80082105--80082184 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
80082095 TTTTATTTTT
* *
80082105 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TT- TCTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-T-A
80082150 TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
80082185 ATATGCCATC
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 7 0.11
3 46 0.74
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:80082144 original size:18 final size:18
Alignment explanation
Indices: 80082109--80082188 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
80082099 ATTTTTTTAT
* *
80082109 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
80082128 TTTATATTATTATTATT-
1 TTTATATTATTATTATTA
* *
80082145 TCTCAT-GTATATATTATTA
1 T-TTATATTAT-TATTATTA
80082164 TTTATATTATTATTA-TA
1 TTTATATTATTATTATTA
80082181 TTATATAT
1 TT-TATAT
80082189 GCCATCTCCA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
17 8 0.16
18 34 0.68
19 8 0.16
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:80082171 original size:12 final size:12
Alignment explanation
Indices: 80082104--80082184 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
80082094 GTTTTATTTT
*
80082104 TTTATTTTATTA
1 TTTATATTATTA
* *
80082116 TTTTTACTATTA
1 TTTATATTATTA
80082128 TTTATATTATTA
1 TTTATATTATTA
* *
80082140 -TTAT-TTCTCA
1 TTTATATTATTA
80082150 TGTATATATTATTA
1 T-T-TATATTATTA
80082164 TTTATATTATTA
1 TTTATATTATTA
80082176 -TTATATTAT
1 TTTATATTAT
80082185 ATATGCCATC
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 4 0.07
11 13 0.23
12 30 0.54
13 4 0.07
14 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:80082265 original size:3 final size:3
Alignment explanation
Indices: 80082259--80082309 Score: 50
Period size: 3 Copynumber: 16.0 Consensus size: 3
80082249 TTCTGACTAC
*
80082259 TAT TAT TAT ATAT ATAT GTAT TAT TGT T-T GTAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
80082307 TAT
1 TAT
80082310 CACCCCTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 1 0.02
3 31 0.72
4 11 0.26
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:80082421 original size:20 final size:20
Alignment explanation
Indices: 80082393--80082446 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
80082383 CTATTACTAT
* *
80082393 TATTATTATATAT-TAGTGTA
1 TATTTTTATATATATA-TATA
*
80082413 TATTTTTATGTATATATATA
1 TATTTTTATATATATATATA
80082433 TATTTTTATATATA
1 TATTTTTATATATA
80082447 GTATTGTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (20 bp):
TATTTTTATATATATATATA
Found at i:80084829 original size:15 final size:14
Alignment explanation
Indices: 80084809--80084858 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
80084799 TATTTAGGCA
80084809 ATTTTTGAAGTTTTG
1 ATTTTTGAA-TTTTG
* * *
80084824 ATTTTTTATTTTTT
1 ATTTTTGAATTTTG
80084838 ATTTTTGAATTTTG
1 ATTTTTGAATTTTG
80084852 ACTTTTT
1 A-TTTTT
80084859 TGTTTTTGGG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.18, C:0.02, G:0.10, T:0.70
Consensus pattern (14 bp):
ATTTTTGAATTTTG
Found at i:80084842 original size:29 final size:29
Alignment explanation
Indices: 80084809--80084865 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
80084799 TATTTAGGCA
80084809 ATTTTTGAAGTTTTGA-TTTTTTATTTTTT
1 ATTTTTGAA-TTTTGACTTTTTTATTTTTT
*
80084838 ATTTTTGAATTTTGACTTTTTTGTTTTT
1 ATTTTTGAATTTTGACTTTTTTATTTTT
80084866 GGGTTCGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.16, C:0.02, G:0.11, T:0.72
Consensus pattern (29 bp):
ATTTTTGAATTTTGACTTTTTTATTTTTT
Found at i:80084857 original size:22 final size:21
Alignment explanation
Indices: 80084819--80084866 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
80084809 ATTTTTGAAG
* *
80084819 TTTTGATTTTTTATTTTTTAT
1 TTTTGAATTTTGATTTTTTAT
*
80084840 TTTTGAATTTTGACTTTTTTGT
1 TTTTGAATTTTGA-TTTTTTAT
80084862 TTTTG
1 TTTTG
80084867 GGTTCGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.12, C:0.02, G:0.10, T:0.75
Consensus pattern (21 bp):
TTTTGAATTTTGATTTTTTAT
Found at i:80097566 original size:22 final size:21
Alignment explanation
Indices: 80097533--80097575 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
80097523 TATAATCTAT
* *
80097533 TTTTATAAAAAATATTTAAAA
1 TTTTAAAAAAAATATATAAAA
80097554 TTTTAAAAGAAAATATATAAAA
1 TTTTAAAA-AAAATATATAAAA
80097576 ATCATATGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
TTTTAAAAAAAATATATAAAA
Found at i:80106045 original size:13 final size:13
Alignment explanation
Indices: 80106023--80106058 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
80106013 TCCCTCTTTA
80106023 AAACCCACCCCTG
1 AAACCCACCCCTG
*
80106036 AAAGCCACCCCTG
1 AAACCCACCCCTG
80106049 AAACCCACCC
1 AAACCCACCC
80106059 ATTGTCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.33, C:0.53, G:0.08, T:0.06
Consensus pattern (13 bp):
AAACCCACCCCTG
Found at i:80111548 original size:21 final size:21
Alignment explanation
Indices: 80111523--80111564 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
80111513 GATTAATATT
* *
80111523 CAACGTGATCTAACTCATAAA
1 CAACGTGATCCAAATCATAAA
80111544 CAACGTGATCCAAATCATAAA
1 CAACGTGATCCAAATCATAAA
80111565 ATTGTTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.24, G:0.10, T:0.21
Consensus pattern (21 bp):
CAACGTGATCCAAATCATAAA
Found at i:80112959 original size:14 final size:14
Alignment explanation
Indices: 80112936--80112973 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
80112926 ATTAACACTG
80112936 CATATATATATGTA
1 CATATATATATGTA
* *
80112950 TATGTATATATGTA
1 CATATATATATGTA
80112964 CATATATATA
1 CATATATATA
80112974 GTTATTGTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (14 bp):
CATATATATATGTA
Found at i:80115897 original size:22 final size:23
Alignment explanation
Indices: 80115872--80115932 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
80115862 GGGTCAAAAT
*
80115872 TAAATTATAAATTTTATAA-TAG
1 TAAATTATAAATTTTATAAGAAG
* * *
80115894 TAAAAATATAATTTTTA-AAGAAT
1 T-AAATTATAAATTTTATAAGAAG
80115917 TAAATTA-AAATTTTAT
1 TAAATTATAAATTTTAT
80115933 CATTTTTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
21 7 0.23
22 8 0.27
23 15 0.50
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (23 bp):
TAAATTATAAATTTTATAAGAAG
Found at i:80119443 original size:31 final size:29
Alignment explanation
Indices: 80119408--80119467 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
80119398 GGTTATAATT
*
80119408 TATAAAAGTTGAATCAAATTAAAATATTATA
1 TATAAAA-TTGAATAAAATTAAAAT-TTATA
**
80119439 TATAAAATTTTATAAAATTAAAATTTATA
1 TATAAAATTGAATAAAATTAAAATTTATA
80119468 ATTTTGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 5 0.19
30 14 0.54
31 7 0.27
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (29 bp):
TATAAAATTGAATAAAATTAAAATTTATA
Found at i:80119467 original size:15 final size:15
Alignment explanation
Indices: 80119423--80119485 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 15
80119413 AAGTTGAATC
80119423 AAATTAAAATATTAT-
1 AAATTAAAAT-TTATA
*
80119438 ATA-TAAAATTTTATA
1 AAATTAAAA-TTTATA
80119453 AAATTAAAATTTATA
1 AAATTAAAATTTATA
** *
80119468 ATTTTGAAATTTATA
1 AAATTAAAATTTATA
80119483 AAA
1 AAA
80119486 AAAATAGTAC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
14 9 0.24
15 24 0.63
16 5 0.13
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (15 bp):
AAATTAAAATTTATA
Found at i:80120331 original size:15 final size:15
Alignment explanation
Indices: 80120321--80120350 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80120311 TTGAAACAAA
80120321 AAAAAAAGAAAAAAG
1 AAAAAAAGAAAAAAG
*
80120336 AAGAAAAGAAAAAAG
1 AAAAAAAGAAAAAAG
80120351 GCTTACCTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAAAAAG
Found at i:80120334 original size:7 final size:7
Alignment explanation
Indices: 80120318--80120350 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
80120308 AAATTGAAAC
80120318 AAAA-AA
1 AAAAGAA
80120324 AAAAGAA
1 AAAAGAA
80120331 AAAAGAA
1 AAAAGAA
80120338 GAAAAGAA
1 -AAAAGAA
80120346 AAAAG
1 AAAAG
80120351 GCTTACCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 4 0.16
7 14 0.56
8 7 0.28
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:80124425 original size:16 final size:16
Alignment explanation
Indices: 80124404--80124434 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
80124394 AGTAAAAATA
80124404 ATATAAAATTTATAAT
1 ATATAAAATTTATAAT
80124420 ATATAAAATTTATAA
1 ATATAAAATTTATAA
80124435 ATAATATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAAAATTTATAAT
Found at i:80124445 original size:16 final size:16
Alignment explanation
Indices: 80124399--80124446 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
80124389 ATTTAAGTAA
80124399 AAATAATATAAAATTTAT
1 AAATAATAT--AATTTAT
*
80124417 -AATATATAAAATTTAT
1 AAATA-ATATAATTTAT
80124433 AAATAATATAATTT
1 AAATAATATAATTT
80124447 TTTTCGTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 15 0.58
17 8 0.31
18 3 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATAATATAATTTAT
Found at i:80124926 original size:133 final size:132
Alignment explanation
Indices: 80124784--80125043 Score: 380
Period size: 133 Copynumber: 2.0 Consensus size: 132
80124774 AAACTCACTT
* *
80124784 ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAGTAATTTTTAAAATTGAATTTTG-
1 ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAATTGAA-TCTGA
** ** * *
80124848 GTATAATTATTTGTGTAATTACTCCAATTCTCACTCTT-CCTCTAAGAATTGAAAAGTGTAATTG
65 GTATAATTACCTGCATAATTACTCAAATTCTCACCCTTCCCT-TAAG-ATTGAAAAGTGTAATTG
80124912 GATAC
128 GATAC
*
80124917 ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAATTTAATCTGAG
1 ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAATTGAATCTGAG
* *
80124982 TGTAATTACCTGCATAATTACTCAAATTCTCACCCTTCCCTTAAGATTGGAAAGTGTAATTG
66 TATAATTACCTGCATAATTACTCAAATTCTCACCCTTCCCTTAAGATTGAAAAGTGTAATTG
80125044 AGTTGCTCCA
Statistics
Matches: 114, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
132 19 0.17
133 92 0.81
134 3 0.03
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (132 bp):
ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAATTGAATCTGAG
TATAATTACCTGCATAATTACTCAAATTCTCACCCTTCCCTTAAGATTGAAAAGTGTAATTGGAT
AC
Found at i:80126419 original size:28 final size:24
Alignment explanation
Indices: 80126386--80126441 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 24
80126376 AATCCTTTCA
*
80126386 TTTATAAATTTTAATTAATTATATATTT
1 TTTATAAAATTTAA--AATT-TAT-TTT
80126414 TTTATAAAATTTAAAATTTATTTT
1 TTTATAAAATTTAAAATTTATTTT
80126438 TTTA
1 TTTA
80126442 AGATTTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 7 0.26
25 3 0.11
26 4 0.15
28 13 0.48
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTATAAAATTTAAAATTTATTTT
Found at i:80129224 original size:18 final size:18
Alignment explanation
Indices: 80129189--80129230 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
80129179 TATGACTTTT
80129189 AAAAGTAAAAACTAAAAA
1 AAAAGTAAAAACTAAAAA
* *
80129207 TAAAGT-AAAACTGGAAAA
1 AAAAGTAAAAACT-AAAAA
80129225 AAAAGT
1 AAAAGT
80129231 GAACGATACA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.69, C:0.05, G:0.12, T:0.14
Consensus pattern (18 bp):
AAAAGTAAAAACTAAAAA
Found at i:80135650 original size:26 final size:26
Alignment explanation
Indices: 80135621--80135670 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
80135611 AAACCGATTA
80135621 AGATTAATTACAATAAATTAAATCTG
1 AGATTAATTACAATAAATTAAATCTG
* *
80135647 AGATTGATTACAGTAAATTAAATC
1 AGATTAATTACAATAAATTAAATC
80135671 AGTTGATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.34
Consensus pattern (26 bp):
AGATTAATTACAATAAATTAAATCTG
Found at i:80136690 original size:27 final size:28
Alignment explanation
Indices: 80136638--80136690 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
80136628 TTTATAAGTG
*
80136638 AAAGAAAATACATGCACTATGATGGTGA
1 AAAGAAAATACATGCACAATGATGGTGA
80136666 AAAGAAAATACATGCACAATG-TGGT
1 AAAGAAAATACATGCACAATGATGGT
80136691 CAATGACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (28 bp):
AAAGAAAATACATGCACAATGATGGTGA
Found at i:80140476 original size:54 final size:54
Alignment explanation
Indices: 80140410--80140513 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
80140400 GATATCTAAA
* * * *
80140410 TTATTAACTTAATTTAATTTGATCCAAAGAATACGACAATTAGGAAAAAAAAAC
1 TTATTAACTTAATTTAATATAACCCAAAGAATACAACAATTAGGAAAAAAAAAC
* * *
80140464 TTATTAATTTAATTTAATATAACCCAAAGAATATAATAATTAGGAAAAAA
1 TTATTAACTTAATTTAATATAACCCAAAGAATACAACAATTAGGAAAAAA
80140514 CTATACACAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.52, C:0.09, G:0.08, T:0.32
Consensus pattern (54 bp):
TTATTAACTTAATTTAATATAACCCAAAGAATACAACAATTAGGAAAAAAAAAC
Found at i:80151025 original size:13 final size:13
Alignment explanation
Indices: 80151007--80151032 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80150997 TAAACTCAAG
80151007 TTTAATAATATAA
1 TTTAATAATATAA
80151020 TTTAATAATATAA
1 TTTAATAATATAA
80151033 AAAAGTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TTTAATAATATAA
Found at i:80151516 original size:5 final size:5
Alignment explanation
Indices: 80151506--80151547 Score: 77
Period size: 5 Copynumber: 8.6 Consensus size: 5
80151496 CGAAATGTGA
80151506 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
80151548 GAACACACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 32 0.89
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:80155979 original size:5 final size:5
Alignment explanation
Indices: 80155969--80156000 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
80155959 CAATTTGTGA
80155969 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
80156001 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:80155994 original size:9 final size:9
Alignment explanation
Indices: 80155970--80156000 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
80155960 AATTTGTGAA
80155970 AAATAAAAT
1 AAATAAAAT
80155979 AAAATAAAAT
1 -AAATAAAAT
80155989 AAATAAAAT
1 AAATAAAAT
80155998 AAA
1 AAA
80156001 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:80158199 original size:39 final size:39
Alignment explanation
Indices: 80158145--80158224 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
80158135 AGTTACTCCG
80158145 TGTCCTCAAATTTGGCTTTGCTTCGGCAAATTCAACAGA
1 TGTCCTCAAATTTGGCTTTGCTTCGGCAAATTCAACAGA
80158184 TGTCCTCAAATTTGGCTTTGCTTCGGCAAATTCAACAGA
1 TGTCCTCAAATTTGGCTTTGCTTCGGCAAATTCAACAGA
80158223 TG
1 TG
80158225 CTGCAAAGCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (39 bp):
TGTCCTCAAATTTGGCTTTGCTTCGGCAAATTCAACAGA
Found at i:80161091 original size:3 final size:3
Alignment explanation
Indices: 80161083--80161109 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
80161073 GGAGGTTAAA
80161083 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
80161110 GGTTATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:80161267 original size:28 final size:28
Alignment explanation
Indices: 80161213--80161269 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
80161203 AAAATCCGTC
*
80161213 ATTTTATAAAATGAGAAATTATCTTTTA
1 ATTTTATAAAATGAGAAATAATCTTTTA
* *
80161241 ATTTTAT-AAATGATGATATAATTTTTTA
1 ATTTTATAAAATGA-GAAATAATCTTTTA
80161269 A
1 A
80161270 AAAATTATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (28 bp):
ATTTTATAAAATGAGAAATAATCTTTTA
Found at i:80162881 original size:3 final size:3
Alignment explanation
Indices: 80162873--80162911 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
80162863 TAAATTGCAC
80162873 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
80162912 ATTAGATACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:80169862 original size:15 final size:15
Alignment explanation
Indices: 80169842--80169873 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80169832 ATATTATTTT
*
80169842 TATTTAATTTTAAAA
1 TATTTAATATTAAAA
80169857 TATTTAATATTAAAA
1 TATTTAATATTAAAA
80169872 TA
1 TA
80169874 ATATAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTTAATATTAAAA
Found at i:80175544 original size:29 final size:30
Alignment explanation
Indices: 80175486--80175555 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
80175476 GTTTTAAAAT
*
80175486 TATATATGAATTTTGATTTAATGTAGAATTA
1 TATATATGAATTTTAATTTAATGTA-AATTA
**
80175517 TATATATGAATTTTAATTTGGTGT-AATTA
1 TATATATGAATTTTAATTTAATGTAAATTA
*
80175546 TATACATGAA
1 TATATATGAA
80175556 ACTCTAATTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 14 0.40
31 21 0.60
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (30 bp):
TATATATGAATTTTAATTTAATGTAAATTA
Found at i:80175595 original size:31 final size:30
Alignment explanation
Indices: 80175515--80175596 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 30
80175505 AATGTAGAAT
* *
80175515 TATATATATG-AATTTTAATTTGGTGTAAT
1 TATATACATGAAATTTTAATTTGGTGTAAA
* * *
80175544 TATATACATGAAACTCTAATTGTGGTTTAAA
1 TATATACATGAAATTTTAATT-TGGTGTAAA
* *
80175575 TCTATACTTGAAATTTTAATTT
1 TATATACATGAAATTTTAATTT
80175597 TGATTTATTC
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
29 9 0.21
30 9 0.21
31 24 0.57
ACGTcount: A:0.35, C:0.06, G:0.11, T:0.48
Consensus pattern (30 bp):
TATATACATGAAATTTTAATTTGGTGTAAA
Found at i:80177296 original size:18 final size:18
Alignment explanation
Indices: 80177259--80177296 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
80177249 TTGGCCGTGG
*
80177259 ACCAAATTAAATATTGAA
1 ACCAAATTAAATATTCAA
80177277 ACCAAATTCAAATA-TCAA
1 ACCAAATT-AAATATTCAA
80177295 AC
1 AC
80177297 GAGGACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.24
Consensus pattern (18 bp):
ACCAAATTAAATATTCAA
Found at i:80179702 original size:2 final size:2
Alignment explanation
Indices: 80179689--80179726 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
80179679 GGTAGGCTGC
*
80179689 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80179727 ACTATTTCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:80180052 original size:18 final size:19
Alignment explanation
Indices: 80180031--80180074 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
80180021 TGTATTCGCA
* *
80180031 AAAAAAAAAATCAA-AGAT
1 AAAAAAAAAACCAACAAAT
*
80180049 AAAAAATAAACCAACAAAT
1 AAAAAAAAAACCAACAAAT
80180068 AAAAAAA
1 AAAAAAA
80180075 TCCAAAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.80, C:0.09, G:0.02, T:0.09
Consensus pattern (19 bp):
AAAAAAAAAACCAACAAAT
Found at i:80181163 original size:43 final size:42
Alignment explanation
Indices: 80181089--80181174 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 42
80181079 GGTGATCCTT
* *
80181089 CATGAATTTTGTTTGAGTATTCTAGACACCACTTGTTACAAA
1 CATGAATTTTATTTAAGTATTCTAGACACCACTTGTTACAAA
*
80181131 CATGAATTTTATTTAAGTTATTCTAGAGACCACTTGTTACAAA
1 CATGAATTTTATTTAAG-TATTCTAGACACCACTTGTTACAAA
80181174 C
1 C
80181175 CCTCTTTTAG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 15 0.38
43 25 0.62
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (42 bp):
CATGAATTTTATTTAAGTATTCTAGACACCACTTGTTACAAA
Found at i:80188299 original size:21 final size:20
Alignment explanation
Indices: 80188257--80188300 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
80188247 ATAGTGGGCG
* **
80188257 TTTTTTTTACTTTTTTTTCC
1 TTTTTTTTACTGTTTTGCCC
80188277 TTTTTATTTACTGTTTTGCCC
1 TTTTT-TTTACTGTTTTGCCC
80188298 TTT
1 TTT
80188301 CATCTCTACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.07, C:0.16, G:0.05, T:0.73
Consensus pattern (20 bp):
TTTTTTTTACTGTTTTGCCC
Found at i:80196552 original size:162 final size:160
Alignment explanation
Indices: 80196253--80196574 Score: 430
Period size: 162 Copynumber: 2.0 Consensus size: 160
80196243 CAACCGCGGC
* *
80196253 ACTCTAGCAGAACTAGGAAAACGAGCCCGTACTCCTCTCCTATTTGAAGAATTCTGAGAAGTCCG
1 ACTCCAGCAGAACTAGGAAAACGAGCCCATACTCCTCTCCTATTTGAAGAATTCTGAGAAGTCCG
** * *
80196318 CAATGGTGACCGAGTATGCGACTGCCTTGTTGACCCTCTCTGCATAAGCAAAGAATAATGTTACA
66 CAATGAAGACCGAGTACGCGACTGCCGTGTTGACCCTCTCTGCATAAGCAAAGAATAA--TTACA
* *
80196383 GGAGGAACTTACACAAATTCTAAAGGAAAGGG
129 GGAGGAACTTACACAAATTCAAAAGAAAAGGG
* *
80196415 ACTCCAGCAGAAGTAGGAGAACGAGCCCATACTCCTCTCCTATTTGAAGAATTCTGAGAAGTCCG
1 ACTCCAGCAGAACTAGGAAAACGAGCCCATACTCCTCTCCTATTTGAAGAATTCTGAGAAGTCCG
* * * * **
80196480 CACTGAAGACTGAGTACGGGATTGCCGTGTTGGGCCTCTCTGCATTAGAAGCAAAGAATAA-TAC
66 CAATGAAGACCGAGTACGCGACTGCCGTGTTGACCCTCTCTGCA-T--AAGCAAAGAATAATTAC
* *
80196544 ATGAGGAACTTATACAAATTCAAAAGAAAAG
128 AGGAGGAACTTACACAAATTCAAAAGAAAAG
80196575 CATCAAGTTC
Statistics
Matches: 139, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
162 125 0.90
163 1 0.01
165 13 0.09
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (160 bp):
ACTCCAGCAGAACTAGGAAAACGAGCCCATACTCCTCTCCTATTTGAAGAATTCTGAGAAGTCCG
CAATGAAGACCGAGTACGCGACTGCCGTGTTGACCCTCTCTGCATAAGCAAAGAATAATTACAGG
AGGAACTTACACAAATTCAAAAGAAAAGGG
Found at i:80213245 original size:2 final size:2
Alignment explanation
Indices: 80213238--80213264 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
80213228 TCTTTCATTC
80213238 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
80213265 TTGCTTTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80219320 original size:99 final size:102
Alignment explanation
Indices: 80219198--80219394 Score: 260
Period size: 99 Copynumber: 2.0 Consensus size: 102
80219188 TACTTATGAA
* *
80219198 TTATGAATAGTTATTTACCTTTTTTAAGAT-ATATTTTATGATTAATTATTTACTTTT-TTGATA
1 TTATGAATAATTATTTACCTTTTTTAAG-TCATATTTTATGATTAATTAATTACTTTTATTGATA
* *
80219261 CTCTTTAATT-TCGGTCAAAAT-A-TTTTTTATTTTATT
65 CTCCTTAATTAT-GATCAAAATAATTTTTTTATTTTATT
* * * * *
80219297 TTATGACTAATTATTTACTTTTTTTGAGTCATATTTTATTATTAATTAATTATTTTTATTGATAC
1 TTATGAATAATTATTTACCTTTTTTAAGTCATATTTTATGATTAATTAATTACTTTTATTGATAC
80219362 TCCTTAATTATGATCAAAATAATTTTTTTATTT
66 TCCTTAATTATGATCAAAATAATTTTTTTATTT
80219395 GTCGTTAAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
98 1 0.01
99 48 0.57
100 23 0.27
101 2 0.02
102 10 0.12
ACGTcount: A:0.29, C:0.07, G:0.06, T:0.57
Consensus pattern (102 bp):
TTATGAATAATTATTTACCTTTTTTAAGTCATATTTTATGATTAATTAATTACTTTTATTGATAC
TCCTTAATTATGATCAAAATAATTTTTTTATTTTATT
Found at i:80227085 original size:19 final size:18
Alignment explanation
Indices: 80227047--80227089 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
80227037 AAATAATTTT
80227047 TTAAATTTTAAAAAAAAA
1 TTAAATTTTAAAAAAAAA
* *
80227065 TTAAGTTTTAAAAAATCAA
1 TTAAATTTTAAAAAA-AAA
80227084 TTAAAT
1 TTAAAT
80227090 ATGGACTTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
TTAAATTTTAAAAAAAAA
Found at i:80228481 original size:17 final size:18
Alignment explanation
Indices: 80228459--80228497 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
80228449 CATGGGAATT
*
80228459 AATAAAAA-ATATTTTTA
1 AATAAAAACATACTTTTA
80228476 AATAAAAATCATACTTTTA
1 AATAAAAA-CATACTTTTA
80228495 AAT
1 AAT
80228498 TGTATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
19 11 0.58
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
AATAAAAACATACTTTTA
Found at i:80229811 original size:31 final size:30
Alignment explanation
Indices: 80229751--80229819 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 30
80229741 TATTATTTTT
* *
80229751 AGTTAAATTTAATTTTCAATATTTTAAAAA
1 AGTTAAATTTAATATTCAATATTTCAAAAA
80229781 GAGTTAAATTTAATCATT-AAT-TATTCAAAAA
1 -AGTTAAATTTAAT-ATTCAATAT-TTCAAAAA
80229812 A-TTAAATT
1 AGTTAAATT
80229820 ATTATTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 7 0.21
30 2 0.06
31 23 0.68
32 2 0.06
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (30 bp):
AGTTAAATTTAATATTCAATATTTCAAAAA
Found at i:80235462 original size:11 final size:11
Alignment explanation
Indices: 80235446--80235480 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
80235436 ATTTTCTCAT
80235446 AAAAATATTAA
1 AAAAATATTAA
80235457 AAAAATATT-A
1 AAAAATATTAA
80235467 AAAAATCATTAA
1 AAAAAT-ATTAA
80235479 AA
1 AA
80235481 GTAATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.32
11 12 0.55
12 3 0.14
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAAATATTAA
Found at i:80239666 original size:13 final size:14
Alignment explanation
Indices: 80239649--80239686 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
80239639 TTATTCTTAA
80239649 AAAATATTTAA-AT
1 AAAATATTTAATAT
*
80239662 TAAATATTTAATAT
1 AAAATATTTAATAT
80239676 AAAAT-TTTAAT
1 AAAATATTTAAT
80239687 TGATATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AAAATATTTAATAT
Found at i:80243930 original size:45 final size:46
Alignment explanation
Indices: 80243821--80244063 Score: 247
Period size: 46 Copynumber: 5.0 Consensus size: 46
80243811 CTATCTTTAA
* * * ** * *
80243821 CATGATGCCATAGTGTCTTTCAATTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATAT
*
80243867 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCAT-T
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
80243912 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
* *
80243958 CACGTTGCCATGGTATCTTTCAACCATGGTCTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGG--T----C-T--TATT---CATTTCATAT
* *
80244016 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
80244062 CA
1 CA
80244064 GAGAGCACGC
Statistics
Matches: 170, Mismatches: 13, Indels: 28
0.81 0.06 0.13
Matches are distributed among these distances:
45 48 0.28
46 73 0.43
48 1 0.01
49 2 0.01
51 1 0.01
52 2 0.01
53 1 0.01
55 3 0.02
56 1 0.01
58 38 0.22
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
Found at i:80243965 original size:91 final size:91
Alignment explanation
Indices: 80243821--80243989 Score: 250
Period size: 91 Copynumber: 1.9 Consensus size: 91
80243811 CTATCTTTAA
* ** * *
80243821 CATGATGCCATAGTGTCTTTCAATTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTCTATCACGTTGCCATGGTATCTT
80243886 TCAACCATGGTCTTGTTCATTTCATT
66 TCAACCATGGTCTTGTTCATTTCATT
* * *
80243912 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATATCACGTTGCCATGGTATCT
1 CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTC-TATCACGTTGCCATGGTATCT
80243976 TTCAACCATGGTCT
65 TTCAACCATGGTCT
80243990 CAACCATGGT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
90 4 0.06
91 65 0.94
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (91 bp):
CATGATGCCATAGTATCTTTCAACCATGGTCTTACTCATTTTCTATCACGTTGCCATGGTATCTT
TCAACCATGGTCTTGTTCATTTCATT
Found at i:80243994 original size:12 final size:12
Alignment explanation
Indices: 80243977--80244001 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80243967 ATGGTATCTT
80243977 TCAACCATGGTC
1 TCAACCATGGTC
80243989 TCAACCATGGTC
1 TCAACCATGGTC
80244001 T
1 T
80244002 TACACATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (12 bp):
TCAACCATGGTC
Found at i:80243995 original size:58 final size:58
Alignment explanation
Indices: 80243931--80244047 Score: 207
Period size: 58 Copynumber: 2.0 Consensus size: 58
80243921 ATGGTATCTT
**
80243931 TCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
1 TCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
*
80243989 TCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
1 TCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
80244047 T
1 T
80244048 TATACATTTC
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.37
Consensus pattern (58 bp):
TCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTC
Found at i:80247535 original size:3 final size:3
Alignment explanation
Indices: 80247527--80247560 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
80247517 GGCATAGTTA
80247527 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
80247561 CTTTTGTCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:80248962 original size:31 final size:30
Alignment explanation
Indices: 80248908--80248980 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
80248898 TGTTTTCATA
* * * *
80248908 TTATTT-TATGTAAATATTTTCTTTTAAAT
1 TTATTTATATATATATATTCTCTTTAAAAT
80248937 TTATTATATATATATATATTCTCTTTAAAAT
1 TTATT-TATATATATATATTCTCTTTAAAAT
*
80248968 TTATTTATGTATA
1 TTATTTATATATA
80248981 ATTTGAGCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 5 0.14
30 8 0.22
31 24 0.65
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.59
Consensus pattern (30 bp):
TTATTTATATATATATATTCTCTTTAAAAT
Found at i:80249751 original size:127 final size:129
Alignment explanation
Indices: 80249600--80249835 Score: 395
Period size: 130 Copynumber: 1.8 Consensus size: 129
80249590 ATTTTCATCT
* *
80249600 CGTGTTTTGGAAATCATGAGGTGATTTC-A-GTTTTTGGAGGCTTAAAATATCGTGTCCTAACGT
1 CGTGTTTTGGAAATCATGAGGTGATCTCAATGTTTTTGGAAGCTTAAAATATCGTGTCCTAACGT
* *
80249663 GCTGGATGTGGTATTTTATTCCTTTGGAACGAGTGAATCTTAAAATCCAACTTGAGTTGTTTCG
66 GCTGGATGTGGTATTTAATTCCTTTAGAACGAGTGAATCTTAAAATCCAACTTGAGTTGTTTCG
* *
80249727 CGTGTTTTGGAAATCATGAGGTGATCTCAATTTTTTTTGGAAGTTTAAAATATCGTGTCCTAACG
1 CGTGTTTTGGAAATCATGAGGTGATCTCAA-TGTTTTTGGAAGCTTAAAATATCGTGTCCTAACG
80249792 TGCTGGATGTGGTATTTAATTCCTTTAGAACGAGTGAATCTTAA
65 TGCTGGATGTGGTATTTAATTCCTTTAGAACGAGTGAATCTTAA
80249836 CAAACTCGAA
Statistics
Matches: 100, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
127 27 0.27
128 1 0.01
130 72 0.72
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.39
Consensus pattern (129 bp):
CGTGTTTTGGAAATCATGAGGTGATCTCAATGTTTTTGGAAGCTTAAAATATCGTGTCCTAACGT
GCTGGATGTGGTATTTAATTCCTTTAGAACGAGTGAATCTTAAAATCCAACTTGAGTTGTTTCG
Found at i:80254687 original size:27 final size:27
Alignment explanation
Indices: 80254657--80254714 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
80254647 CATTGTCGAT
*
80254657 ATTCCCTTTGTTTACTTCTTGTTTTGA
1 ATTCCCTCTGTTTACTTCTTGTTTTGA
80254684 ATTCCCTCTGTTTACTTCTTGTTTTGA
1 ATTCCCTCTGTTTACTTCTTGTTTTGA
80254711 ATTC
1 ATTC
80254715 TTTAATAGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.12, C:0.21, G:0.10, T:0.57
Consensus pattern (27 bp):
ATTCCCTCTGTTTACTTCTTGTTTTGA
Found at i:80256199 original size:14 final size:14
Alignment explanation
Indices: 80256180--80256210 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
80256170 ACCTAAACAA
80256180 TAACAATAAAATAG
1 TAACAATAAAATAG
*
80256194 TAACAATATAATAG
1 TAACAATAAAATAG
80256208 TAA
1 TAA
80256211 AATGGTGGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.26
Consensus pattern (14 bp):
TAACAATAAAATAG
Found at i:80256565 original size:33 final size:34
Alignment explanation
Indices: 80256502--80256567 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
80256492 TTTCCAATTC
*
80256502 TTAAAAATAGAAAATGAAAATTGTTTTCTGAAAA
1 TTAAAAATAGAAAATGAAAATTGTTCTCTGAAAA
80256536 TTAAAAATA-AAAATAGAAAA-TGTTCTCTGAAA
1 TTAAAAATAGAAAAT-GAAAATTGTTCTCTGAAA
80256568 CTAAACTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 16 0.53
34 14 0.47
ACGTcount: A:0.55, C:0.05, G:0.11, T:0.30
Consensus pattern (34 bp):
TTAAAAATAGAAAATGAAAATTGTTCTCTGAAAA
Found at i:80257059 original size:28 final size:29
Alignment explanation
Indices: 80257008--80257063 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
80256998 GTGTCACATT
*
80257008 TTGAAATAAAAAGTAGAGGGACTAAATTG
1 TTGAAATAAAAAGTAGAGAGACTAAATTG
80257037 TTGAAATAAAAA-TA-AGAAGACTAAATT
1 TTGAAATAAAAAGTAGAG-AGACTAAATT
80257064 TCAAAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 2 0.08
28 11 0.44
29 12 0.48
ACGTcount: A:0.54, C:0.04, G:0.18, T:0.25
Consensus pattern (29 bp):
TTGAAATAAAAAGTAGAGAGACTAAATTG
Found at i:80259921 original size:43 final size:44
Alignment explanation
Indices: 80259874--80259962 Score: 135
Period size: 43 Copynumber: 2.0 Consensus size: 44
80259864 GTTGAAATAA
** *
80259874 AATAGAAGTTTTGATAATTATGCATTT-AAAATAATAATAATTT
1 AATAGAAGTTTTGATAATTACACATTTAAAAATAATAAGAATTT
*
80259917 AATAGAAGTTTTGATAATTACACATTTAAAAATAATTAGAATTT
1 AATAGAAGTTTTGATAATTACACATTTAAAAATAATAAGAATTT
80259961 AA
1 AA
80259963 ATTACAATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 25 0.61
44 16 0.39
ACGTcount: A:0.48, C:0.03, G:0.09, T:0.39
Consensus pattern (44 bp):
AATAGAAGTTTTGATAATTACACATTTAAAAATAATAAGAATTT
Found at i:80259962 original size:17 final size:18
Alignment explanation
Indices: 80259930--80259963 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80259920 AGAAGTTTTG
80259930 ATAATTACACATTTAAAA
1 ATAATTACACATTTAAAA
*
80259948 ATAATTAGA-ATTTAAA
1 ATAATTACACATTTAAA
80259964 TTACAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (18 bp):
ATAATTACACATTTAAAA
Found at i:80262580 original size:21 final size:21
Alignment explanation
Indices: 80262556--80262602 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
80262546 ATATAGTAAC
*
80262556 AACAATAATAATAATAATAAT
1 AACAATAATAATAATAAAAAT
* *
80262577 AACAATACTAATTATAAAAAT
1 AACAATAATAATAATAAAAAT
80262598 AACAA
1 AACAA
80262603 GGACATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (21 bp):
AACAATAATAATAATAAAAAT
Found at i:80264439 original size:56 final size:55
Alignment explanation
Indices: 80264171--80265068 Score: 1420
Period size: 54 Copynumber: 16.4 Consensus size: 55
80264161 GGTGTGTGAT
* * * *
80264171 CCTCTTGCAATATGAATT-AATTTTTG-AAAACAGAAATTAAAAGGCTCAACCCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
* *
80264224 CCTCTCGTAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAAGGTTCAACTCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
80264278 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
* *
80264333 CCTCCCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTACAAGGCTCAACTCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
*
80264387 CCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
1 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
* *
80264443 CCTCCCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTACAAGGCTCAACTCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
*
80264497 CCTCTCACAATATGAGTTGATTTTTTG-AAAACAGAAATTAAAAGGCTCAACTCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
* * * *
80264551 CCTCTCGCAATATGAATTGA-TTTTTGAAAAACAGGAATTAAAAGGTTCAACCCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
*
80264605 CCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAGGTTCAACTCA
1 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
* * * *
80264661 CCTCTCGCAATATGAATTGA-TTTTTGAAAAACAGGAATTAAAAGGTTCAACCCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
*
80264715 CCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAGGTTCAACTCA
1 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
80264771 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
* *
80264826 CCTCCCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTACAAGGCTCAACTCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
*
80264880 CCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
1 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
* * *
80264936 CCTCCCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTACAAGGCTTAACTCA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
*
80264990 CCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
1 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
80265046 CCTCTCGCAATATGAGTTGATTT
1 CCTCTCGCAATATGAGTTGATTT
80265069 CAGATTTAAT
Statistics
Matches: 783, Mismatches: 47, Indels: 28
0.91 0.05 0.03
Matches are distributed among these distances:
53 27 0.03
54 386 0.49
55 114 0.15
56 256 0.33
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (55 bp):
CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
Found at i:80264472 original size:110 final size:109
Alignment explanation
Indices: 80264171--80265068 Score: 1428
Period size: 110 Copynumber: 8.2 Consensus size: 109
80264161 GGTGTGTGAT
* * * * *
80264171 CCTCTTGCAATATGAATT-AATTTTTG-AAAACAGAAATTAAAAGGCTCAACCCACCTCTCGTAA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAA
*
80264234 TATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGTTCAACTCA
66 TATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
*
80264278 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCCCGCAA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAA
*
80264343 TATGAGTTGATTTTTGAAAAACAGAAATTACAAGGCTCAACTCA
66 TATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
* *
80264387 CCTCTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCCCGCA
1 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCA
*
80264452 ATATGAGTTGATTTTTGAAAAACAGAAATTACAAGGCTCAACTCA
65 ATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
*
80264497 CCTCTCACAATATGAGTTGATTTTTTG-AAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAA
* * * *
80264561 TATGAATTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACCCA
66 TATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
*
80264605 CCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAGGTTCAACTCACCTCTCGCA
1 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCA
* * * *
80264670 ATATGAATTGATTTTTGAAAAACAGGAATTAAAAGGTTCAACCCA
65 ATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
*
80264715 CCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAGGTTCAACTCACCTCTCGCA
1 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCA
80264780 ATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
65 ATATGAGTTGA-TTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
* * *
80264826 CCTCCCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTACAAGGCTCAACTCACCTCTCACAA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAA
80264890 TATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
66 TATGAGTTGA--TTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
* * * *
80264936 CCTCCCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTACAAGGCTTAACTCACCTCTCACAA
1 CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAA
80265000 TATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
66 TATGAGTTGA--TTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
80265046 CCTCTCGCAATATGAGTTGATTT
1 CCTCTCGCAATATGAGTTGATTT
80265069 CAGATTTAAT
Statistics
Matches: 756, Mismatches: 27, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
107 16 0.02
108 101 0.13
109 160 0.21
110 427 0.56
111 52 0.07
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (109 bp):
CCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCA
Found at i:80265312 original size:144 final size:147
Alignment explanation
Indices: 80265155--80265677 Score: 329
Period size: 149 Copynumber: 3.6 Consensus size: 147
80265145 TAACATAAAC
* * * ** * ** *
80265155 TAAAAATACCTCAGCGTGCCCCGAGGCTCAATTCATTTCTTGCAATATGAGT-TGATT-TTGGAA
1 TAAAAACACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTAAAATTCTTGAAA
* * * *
80265218 CATAAATTGAAA-TTACCTCAACGTGT-CTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 CATAAACT-AAAGATACCTCAACGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGAACTGAT
80265281 TTTTGAAACAACAGGAAT
130 TTTTGAAACAACAGGAAT
* * **
80265299 TAAAAACATCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAAAATTCTTGAA
1 TAAAAACACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT-AAAATTCTTGAA
* ** *
80265364 ACATAAACTAAAGATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATTGA
65 ACATAAACTAAAGATACCTCAACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATATGAACTGA
*
80265429 TTTTTG-AAC-ATA--AAT
129 TTTTTGAAACAACAGGAAT
* ** * * ** * * *
80265444 TGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGCT--GATTTTTGAA
1 TAAAAACACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG-TAAAATTCTTGAA
* * * * * * ** *
80265507 ACAACAGGAATTAAAAACATCTCAGCGTG-ACCTGAGGCTTGACTCACCTCTCGCAATATGAGTC
65 AC-ATA--AACTAAAGATACCTCAACGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGA-AC
** * * *
80265571 AAAATTCTTGAAAC-ATA--AAC
126 -TGATTTTTGAAACAACAGGAAT
* * ** * ** *
80265591 TAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAAT-TGATTTTTGA
1 TAAAAACACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTAAAATTCTTG-
* *
80265655 AAACATGAATTAAAGATACCTCA
63 AAACATAAACTAAAGATACCTCA
80265678 GAGTACCCAA
Statistics
Matches: 299, Mismatches: 63, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
143 10 0.03
144 72 0.24
145 44 0.15
146 30 0.10
147 59 0.20
148 4 0.01
149 76 0.25
150 4 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (147 bp):
TAAAAACACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTAAAATTCTTGAAA
CATAAACTAAAGATACCTCAACGTGTACCTGAGGCTCAACTCACCTCTCGCAATATGAACTGATT
TTTGAAACAACAGGAAT
Found at i:80265338 original size:74 final size:71
Alignment explanation
Indices: 80265034--80265678 Score: 472
Period size: 70 Copynumber: 8.9 Consensus size: 71
80265024 AGAAATTAAA
* ** * ** *
80265034 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCAGATTTAATA-AGAATTGGAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA---AACACA-AATTAAAAATACCTCA
* *
80265098 GCGTGCCCCG
62 GCGTGACCTG
* * * * * ** * *
80265108 AGGTTCAGCTCATCTCTCGCAATATGAG-TCAATTTTCTAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACACAAATTAAAAATACCTCAGCGT
* *
80265172 GCCCCG
66 GACCTG
* ** * * * * * * *
80265178 AGGCTCAATTCATTTCTTGCAATATGAGTTGA-TTTTGGAACATAAATTGAAATTACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACACAAATTAAAAATACCTCAGCGT
* *
80265242 GTCTTG
66 GACCTG
* *
80265248 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAC-ACA--AATTAAAAATACCTCAG
80265313 CGTGACCTG
63 CGTGACCTG
** ** * * * *
80265322 AGGCTTGACTCACCTCTCGCAATATGAGTCAAAATTCTTGAAACATAAACTAAAGATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAG-C-TGATTTTTGAAACACAAATTAAAAATACCTCAGC
80265387 GTGTGACCTG
64 --GTGACCTG
** ** * * * *
80265397 AGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTG-AACATAAATTGAAATTACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACACAAATTAAAAATACCTCAGCGT
* *
80265461 GTCTTG
66 GACCTG
* * *
80265467 AGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAC-ACA--AATTAAAAATACCTCAG
80265532 CGTGACCTG
63 CGTGACCTG
** ** * * *
80265541 AGGCTTGACTCACCTCTCGCAATATGAGTCAAAATTCTTGAAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAG-C-TGATTTTTGAAACACAAATTAAAAATACCTCAGC
80265606 GTGTGACCTG
64 --GTGACCTG
** ** *
80265616 AGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTGAAA-ACATGAATTAAAGATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACACA--AATTAAAAATACCTCAG
80265679 AGTACCCAAA
Statistics
Matches: 447, Mismatches: 104, Indels: 40
0.76 0.18 0.07
Matches are distributed among these distances:
70 143 0.32
71 14 0.03
72 25 0.06
73 48 0.11
74 129 0.29
75 68 0.15
76 20 0.04
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACACAAATTAAAAATACCTCAGCGT
GACCTG
Found at i:80265415 original size:75 final size:72
Alignment explanation
Indices: 80265034--80265678 Score: 522
Period size: 74 Copynumber: 8.9 Consensus size: 72
80265024 AGAAATTAAA
** * ** *
80265034 AGGCTCAACTCACCTCTCGCAATATGAGT-TGATTTCAGATTTA-ATAAGAATTGGAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCTGATTTTTGA--AACAT-A-AATTAAAAATACCTC
* *
80265097 AGCGTGCCCCG
62 AGCGTGACCTG
* * * * *
80265108 AGGTTCAGCTCATCTCTCGCAATATGAGTC-AATTTTCT--AACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCTGATTTT-TGAAACATAAATTAAAAATACCTCAGC
* *
80265170 GTGCCCCG
65 GTGACCTG
* ** * * * * *
80265178 AGGCTCAATTCATTTCTTGCAATATGAGT-TGA-TTTTGGAACATAAATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCTGATTTTTGAAACATAAATTAAAAATACCTCAGCG
* *
80265241 TGTCTTG
66 TGACCTG
* * *
80265248 AGGCTCAACTCACCTCTCGCAATATGAG-CTGATTTTTGAAACAACAGGAATTAAAAACATCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTCTGATTTTTGAAAC-ATA--AATTAAAAATACCTCA
80265312 GCGTGACCTG
63 GCGTGACCTG
** ** * * *
80265322 AGGCTTGACTCACCTCTCGCAATATGAGTCAAAATTCTTGAAACATAAACTAAAGATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTC-TGATTTTTGAAACATAAATTAAAAATACCTCAGC
80265387 GTGTGACCTG
65 --GTGACCTG
** * * * *
80265397 AGGCTCAACTCATTTCTCGCAATATGAAT-TGATTTTTG-AACATAAATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCTGATTTTTGAAACATAAATTAAAAATACCTCAGCG
* *
80265460 TGTCTTG
66 TGACCTG
* * * *
80265467 AGGCTCAACTCACCTCTTGCAATATGAG-CTGATTTTTGAAACAACAGGAATTAAAAACATCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTCTGATTTTTGAAAC-ATA--AATTAAAAATACCTCA
80265531 GCGTGACCTG
63 GCGTGACCTG
** ** * *
80265541 AGGCTTGACTCACCTCTCGCAATATGAGTCAAAATTCTTGAAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTC-TGATTTTTGAAACATAAATTAAAAATACCTCAGC
80265606 GTGTGACCTG
65 --GTGACCTG
** * * *
80265616 AGGCTCAACTCATTTCTCGCAATATGAAT-TGATTTTTGAAAACATGAATTAAAGATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCTGATTTTTG-AAACATAAATTAAAAATACCTCAG
80265679 AGTACCCAAA
Statistics
Matches: 451, Mismatches: 95, Indels: 50
0.76 0.16 0.08
Matches are distributed among these distances:
68 1 0.00
69 3 0.01
70 138 0.31
71 13 0.03
72 25 0.06
73 41 0.09
74 140 0.31
75 70 0.16
76 20 0.04
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (72 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCTGATTTTTGAAACATAAATTAAAAATACCTCAGCG
TGACCTG
Found at i:80265455 original size:219 final size:219
Alignment explanation
Indices: 80265034--80265655 Score: 950
Period size: 219 Copynumber: 2.9 Consensus size: 219
80265024 AGAAATTAAA
* ** *** * * ** ** *
80265034 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCAGATTTAATAAGAATTGGAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAG
* * * * **
80265099 CGTGCCCCGAGG-TTCAGCTCATCTCTCGCAATATGAGTC--AATT-TTCTAACATAAACTAAAA
66 CGTGACCTGAGGCTTGA-CTCACCTCTCGCAATATGAGTCAAAATTCTTGAAACATAAACTAAAA
* * * * * *
80265160 ATACCTCAGC--GTGCCCCGAGGCTCAATTCATTTCTTGCAATATGAGTTGATTTTGGAACATAA
130 ATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTGAACATAA
80265223 ATTGAAATTACCTCAACGTGTCTTG
195 ATTGAAATTACCTCAACGTGTCTTG
80265248 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAG
*
80265313 CGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAAAATTCTTGAAACATAAACTAAAGA
66 CGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAAAATTCTTGAAACATAAACTAAAAA
80265378 TACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTGAACATAAA
131 TACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTGAACATAAA
80265443 TTGAAATTACCTCAACGTGTCTTG
196 TTGAAATTACCTCAACGTGTCTTG
*
80265467 AGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAG
80265532 CGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAAAATTCTTGAAACATAAACTAAAAA
66 CGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAAAATTCTTGAAACATAAACTAAAAA
80265597 TACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTGAA
131 TACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTGAA
80265656 AACATGAATT
Statistics
Matches: 374, Mismatches: 28, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
214 83 0.22
215 3 0.01
216 4 0.01
217 25 0.07
219 259 0.69
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (219 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACAACAGGAATTAAAAACATCTCAG
CGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAAAATTCTTGAAACATAAACTAAAAA
TACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATTGATTTTTGAACATAAA
TTGAAATTACCTCAACGTGTCTTG
Found at i:80278332 original size:3 final size:3
Alignment explanation
Indices: 80278324--80278447 Score: 57
Period size: 3 Copynumber: 42.7 Consensus size: 3
80278314 AAGCAATAGG
* * *
80278324 TAA TAA TAA -ATA TAA TAA TAA AAA T-A TAA TAT TAA -AGA TAA TAC
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
* * * *
80278368 TAA GT-A TAA T-A TAA TAA TAA TAA T-G TAA TAA TGA TAG TAA TGA
1 TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
80278411 TGA CAA TAA TAA T-A TAA AAA GAA TAGA TAA -AA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA
80278448 GTAAAAATAG
Statistics
Matches: 90, Mismatches: 19, Indels: 24
0.68 0.14 0.18
Matches are distributed among these distances:
2 12 0.13
3 72 0.80
4 6 0.07
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:80278348 original size:14 final size:14
Alignment explanation
Indices: 80278324--80278399 Score: 64
Period size: 14 Copynumber: 5.3 Consensus size: 14
80278314 AAGCAATAGG
80278324 TAATAATAAATATAA
1 TAATAA-AAATATAA
80278339 TAATAAAAATATAA
1 TAATAAAAATATAA
* * *
80278353 TATTAAAGATAATAC
1 TAATAAAAAT-ATAA
*
80278368 TAAGT-ATAATATAA
1 TAA-TAAAAATATAA
* *
80278382 TAATAATAATGTAA
1 TAATAAAAATATAA
80278396 TAAT
1 TAAT
80278400 GATAGTAATG
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
13 1 0.02
14 34 0.68
15 14 0.28
16 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (14 bp):
TAATAAAAATATAA
Found at i:80278353 original size:26 final size:28
Alignment explanation
Indices: 80278324--80278387 Score: 78
Period size: 26 Copynumber: 2.3 Consensus size: 28
80278314 AAGCAATAGG
*
80278324 TAATAATAAATATAATAATAA-A-AATA
1 TAATAATAAAGATAATAATAAGATAATA
* *
80278350 TAATATTAAAGATAATACTAAGTATAATA
1 TAATAATAAAGATAATAATAAG-ATAATA
80278379 TAATAATAA
1 TAATAATAA
80278388 TAATGTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 18 0.58
28 1 0.03
29 12 0.39
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (28 bp):
TAATAATAAAGATAATAATAAGATAATA
Found at i:80279710 original size:22 final size:22
Alignment explanation
Indices: 80279685--80279747 Score: 108
Period size: 22 Copynumber: 2.9 Consensus size: 22
80279675 TACGAGGATT
* *
80279685 GTGGCGGTATGGGACTGTTGTA
1 GTGGGGGTATGGGGCTGTTGTA
80279707 GTGGGGGTATGGGGCTGTTGTA
1 GTGGGGGTATGGGGCTGTTGTA
80279729 GTGGGGGTATGGGGCTGTT
1 GTGGGGGTATGGGGCTGTT
80279748 AGGGTTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.10, C:0.06, G:0.52, T:0.32
Consensus pattern (22 bp):
GTGGGGGTATGGGGCTGTTGTA
Found at i:80281953 original size:24 final size:24
Alignment explanation
Indices: 80281925--80281975 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
80281915 TCAAAATCTT
80281925 AAAATTCAAATATTTTAATTTCTA
1 AAAATTCAAATATTTTAATTTCTA
* *
80281949 AAAATTTAAATATTTTAATTTTTA
1 AAAATTCAAATATTTTAATTTCTA
80281973 AAA
1 AAA
80281976 GAAATTTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
AAAATTCAAATATTTTAATTTCTA
Found at i:80282013 original size:20 final size:21
Alignment explanation
Indices: 80281984--80282024 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
80281974 AAGAAATTTG
*
80281984 AAAATAATAAATTACAAAATT
1 AAAATAATAAAATACAAAATT
*
80282005 AAAAT-ATAAAATATAAAATT
1 AAAATAATAAAATACAAAATT
80282025 TGTATGACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
AAAATAATAAAATACAAAATT
Found at i:80286900 original size:16 final size:17
Alignment explanation
Indices: 80286879--80286912 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
80286869 AAAATTTAAT
80286879 TATTTT-ATTGAAATAA
1 TATTTTAATTGAAATAA
*
80286895 TATTTTAATTGAGATAA
1 TATTTTAATTGAAATAA
80286912 T
1 T
80286913 TTTCATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (17 bp):
TATTTTAATTGAAATAA
Found at i:80298723 original size:20 final size:20
Alignment explanation
Indices: 80298698--80298748 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
80298688 TAAGGCACTA
80298698 CCGTGTGATGGCTAGG-ACGG
1 CCGTGTGATGGCTAGGTA-GG
80298718 CCGTGTGATGGCTAGGTAGG
1 CCGTGTGATGGCTAGGTAGG
80298738 CCGTGTG-TGGC
1 CCGTGTGATGGC
80298749 ATACGGGCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.13
20 25 0.83
21 1 0.03
ACGTcount: A:0.12, C:0.20, G:0.45, T:0.24
Consensus pattern (20 bp):
CCGTGTGATGGCTAGGTAGG
Found at i:80313023 original size:48 final size:49
Alignment explanation
Indices: 80312932--80313033 Score: 172
Period size: 48 Copynumber: 2.1 Consensus size: 49
80312922 ACTTTAAATG
*
80312932 TTTA-GGCCATTATGTTAAGAAAATCAATAGTAAGTAACTTTTCCATCT
1 TTTATGGCCATTATGTTAAGAAAATCAATAGTAAATAACTTTTCCATCT
*
80312980 TTTATGGCCATTATGTTAAG-AAATTAATAGTAAATAACTTTTCCATCT
1 TTTATGGCCATTATGTTAAGAAAATCAATAGTAAATAACTTTTCCATCT
80313028 TTTATG
1 TTTATG
80313034 ATTTAGTCCT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
48 36 0.71
49 15 0.29
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (49 bp):
TTTATGGCCATTATGTTAAGAAAATCAATAGTAAATAACTTTTCCATCT
Found at i:80316939 original size:2 final size:2
Alignment explanation
Indices: 80316932--80316972 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
80316922 TGTTTCCAGT
80316932 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
80316973 GGTCTCATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:80324104 original size:66 final size:66
Alignment explanation
Indices: 80323998--80324139 Score: 180
Period size: 66 Copynumber: 2.2 Consensus size: 66
80323988 GTTCAAGAAC
* * ** *
80323998 TTGAGAAGACCCGATATCTTGTTTAGGAGCTTGAGAAGACTCGATATCTTGTTCAAGATCTTGGG
1 TTGAGAAGACCCGATATCTTCTTTAGGAGCTTGAGAAGACTCAATATCGAGTTCAAGAGCTTGGG
80324063 A
66 A
* * *
80324064 TTGAGAAGACCTGATAT-TTCTTTCAGGAGCTT-AGGAAGACTTAATATCGAGTTCAGGAGCTTG
1 TTGAGAAGACCCGATATCTTCTTT-AGGAGCTTGA-GAAGACTCAATATCGAGTTCAAGAGCTTG
80324127 GGA
64 GGA
80324130 TTGAGAAGAC
1 TTGAGAAGAC
80324140 TGAATATCTA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
65 6 0.09
66 60 0.91
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (66 bp):
TTGAGAAGACCCGATATCTTCTTTAGGAGCTTGAGAAGACTCAATATCGAGTTCAAGAGCTTGGG
A
Found at i:80324157 original size:66 final size:65
Alignment explanation
Indices: 80324022--80324168 Score: 163
Period size: 66 Copynumber: 2.2 Consensus size: 65
80324012 TATCTTGTTT
* ** * * *
80324022 AGGAGCTTGAGAAGACTCGATATCTTGTTCAAGATCTTGGGATTGAGAAGACCTGATATTTCTTT
1 AGGAGCTTG-GAAGACTCAATATCGAGTTCAAGAGCTTGGGATTGAGAAGACCTGATATATCTTC
80324087 C
65 C
* *
80324088 AGGAGCTTAGGAAGACTTAATATCGAGTTCAGGAGCTTGGGATTGAGAAGA-CTGA-ATATCTAG
1 AGGAGCTT-GGAAGACTCAATATCGAGTTCAAGAGCTTGGGATTGAGAAGACCTGATATATCT--
80324151 TCC
63 TCC
80324154 AGGAGCTTGGGAAGA
1 AGGAGCTT-GGAAGA
80324169 TCTGATATTT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
64 5 0.07
65 4 0.06
66 59 0.86
67 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.28
Consensus pattern (65 bp):
AGGAGCTTGGAAGACTCAATATCGAGTTCAAGAGCTTGGGATTGAGAAGACCTGATATATCTTCC
Found at i:80324534 original size:21 final size:21
Alignment explanation
Indices: 80324508--80324554 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
80324498 AGTGTTGCCA
80324508 CCTTACGAGAGGAAGATAATT
1 CCTTACGAGAGGAAGATAATT
80324529 CCTTACGAGAGGAAGATAATT
1 CCTTACGAGAGGAAGATAATT
80324550 CCTTA
1 CCTTA
80324555 GCAAGACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (21 bp):
CCTTACGAGAGGAAGATAATT
Found at i:80326345 original size:30 final size:31
Alignment explanation
Indices: 80326311--80326372 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
80326301 GATTCATCCA
*
80326311 TGGAAAAT-AAAATAAAGAAAATGATGA-AAT
1 TGGAAAATGAAAAAAAAGAAAA-GATGATAAT
* *
80326341 TGGAAAGTGAAAAAAAATAAAAGATGATAAT
1 TGGAAAATGAAAAAAAAGAAAAGATGATAAT
80326372 T
1 T
80326373 AATTAAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 12 0.44
31 15 0.56
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (31 bp):
TGGAAAATGAAAAAAAAGAAAAGATGATAAT
Found at i:80331900 original size:46 final size:46
Alignment explanation
Indices: 80331833--80332186 Score: 184
Period size: 48 Copynumber: 7.5 Consensus size: 46
80331823 TTTGTGTGCT
80331833 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCC
* * * *
80331879 AGTGTAAGACATGTCTGGGACATGCTTCGGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-A-ATA-TGAGAGCC
* * ** * * * *
80331927 GGTGTAATACATGTCTGGGACATGCATC-GGTATTAAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA-CAATATGAGAGCC
* * * * *
80331973 AGTGTAAGACATGTCTGGGACATGCATCACCCTCGTGATATTCA-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AATA-TGAGAGCC
* * * *** * * *
80332021 AGTGTATGACCTGTCTGGGGCATGACATCAG-C-TTGT-TGCGTGTC
1 AGTGTAAGACATGTCTGGGACATG-CATCAGCCACAATATGAGAGCC
* * *
80332065 AGTGTAAGACCTGTCTAGGACATGGCATC-GACACCAATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCA-CAAT--ATGAGAGCC
* * * * * *
80332114 AGTGTAAGACCTATCTGGGATATGTCATCGGCCTCGCTATATGA-AGCC
1 AGTGTAAGACATGTCTGGGACATG-CATCAG-C-CACAATATGAGAGCC
*
80332162 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
80332187 GCGTTGGCAT
Statistics
Matches: 228, Mismatches: 57, Indels: 43
0.70 0.17 0.13
Matches are distributed among these distances:
43 2 0.01
44 26 0.11
45 3 0.01
46 63 0.28
47 3 0.01
48 74 0.32
49 52 0.23
50 1 0.00
51 3 0.01
52 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCC
Found at i:80331951 original size:48 final size:46
Alignment explanation
Indices: 80331833--80332000 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
80331823 TTTGTGTGCT
*
80331833 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCC
* * *
80331879 AGTGTAAGACATGTCTGGGACATGCTTCGGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATA-TGAGAGCC
* * * * * * *
80331927 GGTGTAATACATGTCTGGGACATGCATCGG-TATTAAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAATATGAGAGCC
80331973 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
80332001 ACCCTCGTGA
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 62 0.61
47 2 0.02
48 34 0.34
49 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCC
Found at i:80332007 original size:94 final size:94
Alignment explanation
Indices: 80331834--80332052 Score: 260
Period size: 94 Copynumber: 2.3 Consensus size: 94
80331824 TTGTGTGCTA
* *
80331834 GTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTCTGGGA
1 GTGTAAGACATGTCTGGGACATGCATCAGCCACAAGACGAGAGCCAGTGTAAGACATGTCTGGGA
* ** *
80331899 CATGCTTCGGCCTCGAGATATTTAAGCCG
66 CATGCATCACCCTCGAGATATTCAAGCCG
* ** * *
80331928 GTGTAATACATGTCTGGGACATGCATC-GGTATTAAGACGAGAGCTAGTGTAAGACATGTCTGGG
1 GTGTAAGACATGTCTGGGACATGCATCAGCCA-CAAGACGAGAGCCAGTGTAAGACATGTCTGGG
* **
80331992 ACATGCATCACCCTCGTGATATTCAAGCTA
65 ACATGCATCACCCTCGAGATATTCAAGCCG
* * *
80332022 GTGTATGACCTGTCTGGGGCATGACATCAGC
1 GTGTAAGACATGTCTGGGACATG-CATCAGC
80332053 TTGTTGCGTG
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
93 2 0.02
94 96 0.93
95 4 0.04
96 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (94 bp):
GTGTAAGACATGTCTGGGACATGCATCAGCCACAAGACGAGAGCCAGTGTAAGACATGTCTGGGA
CATGCATCACCCTCGAGATATTCAAGCCG
Found at i:80332117 original size:49 final size:48
Alignment explanation
Indices: 80332064--80332188 Score: 144
Period size: 49 Copynumber: 2.6 Consensus size: 48
80332054 TGTTGCGTGT
80332064 CAGTGTAAGACCTGTCTAGGACATGGCATCGACAC-CAATAGATGAGAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGAC-CTCAATAGATGA-AGC
* * * * * ** *
80332113 CAGTGTAAGACCTATCTGGGATATGTCATCGGCCTCGCTATATGAAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACCTCAATAGATGAAGC
80332161 CAGTGTAAGACCATGTCTAGGACATGGC
1 CAGTGTAAGACC-TGTCTAGGACATGGC
80332189 GTTGGCATCT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
48 16 0.26
49 46 0.74
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.22
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATCGACCTCAATAGATGAAGC
Found at i:80336132 original size:32 final size:32
Alignment explanation
Indices: 80336060--80336141 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 32
80336050 TCGATTATAT
* *
80336060 TACCG-TAGCTGATGGCTATGTGCCGAACTTAT
1 TACCGCTA-CTGATGGCTTTGTGCCGAACTTAA
* *
80336092 TACAGCTACTGATGGCTTTGTGCC-AATTGTAA
1 TACCGCTACTGATGGCTTTGTGCCGAACT-TAA
*
80336124 TACCGCTACTGAAGGCTT
1 TACCGCTACTGATGGCTT
80336142 AAAGCTGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
31 3 0.07
32 37 0.88
33 2 0.05
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (32 bp):
TACCGCTACTGATGGCTTTGTGCCGAACTTAA
Found at i:80338392 original size:31 final size:31
Alignment explanation
Indices: 80338351--80338418 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
80338341 TTAACAACCT
*
80338351 AGTGACTTAAA-CAAAAGCTTTTAAATATTTC
1 AGTGACTTAAATCAAAA-CTTTTAAATAGTTC
* * *
80338382 AGTGATTTAAATGAAAACTTTTGAATAGTTC
1 AGTGACTTAAATCAAAACTTTTAAATAGTTC
80338413 AGTGAC
1 AGTGAC
80338419 CAATTGTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 27 0.87
32 4 0.13
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (31 bp):
AGTGACTTAAATCAAAACTTTTAAATAGTTC
Found at i:80340577 original size:24 final size:24
Alignment explanation
Indices: 80340541--80340590 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
80340531 GTATAATAAT
80340541 TTTTTAGAATTTTAAATATT-TTTA
1 TTTTTAGAATTTTAAA-ATTATTTA
* *
80340565 TTTTTATATTTTTAAAATTATTTA
1 TTTTTAGAATTTTAAAATTATTTA
80340589 TT
1 TT
80340591 GATATGACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (24 bp):
TTTTTAGAATTTTAAAATTATTTA
Found at i:80343277 original size:40 final size:39
Alignment explanation
Indices: 80343233--80343450 Score: 215
Period size: 40 Copynumber: 5.4 Consensus size: 39
80343223 GCTCGATTGT
* *
80343233 CTTCGGGACATAGCCCGATTATAGTAATTCGCACAATTGC
1 CTTCGGGACATAGCCCGATT-TAGTAACTCGCACAAATGC
80343273 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACA-TAGCCC-GATTTAGTAACTCGCACAAATGC
* * * *
80343313 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCC-GATTTAGTAACTCGCACAAATGC
* * * *
80343353 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCC-GATTTAGTAACTCGCACAAATGC
* * * *
80343393 CTTCGGGA-ATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCC-GATTTAGTAAC-TCGCACAAATGC
*
80343434 CTTCGGGACTTAGCCCG
1 CTTCGGGACATAGCCCG
80343451 GATACCATTC
Statistics
Matches: 156, Mismatches: 16, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
39 2 0.01
40 127 0.81
41 25 0.16
42 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CTTCGGGACATAGCCCGATTTAGTAACTCGCACAAATGC
Found at i:80343345 original size:80 final size:80
Alignment explanation
Indices: 80343233--80343453 Score: 280
Period size: 80 Copynumber: 2.8 Consensus size: 80
80343223 GCTCGATTGT
* * * * * * *
80343233 CTTCGGGACATAGCCCGATTATAGTAATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
80343298 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* * * *
80343313 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGT
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
80343378 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* * * * * *
80343393 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGTTTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGAT
80343454 ACCATTCGAA
Statistics
Matches: 120, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 92 0.77
81 28 0.23
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
AACTCGCACAAATGC
Found at i:80351033 original size:46 final size:46
Alignment explanation
Indices: 80350851--80351033 Score: 167
Period size: 46 Copynumber: 3.9 Consensus size: 46
80350841 TTACTTGTGT
* * * *
80350851 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GACGA
* * *
80350897 GAGCCAGTGTAAGACCATGTCTGGGACATGGAATCAGC-ATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGACGA
* ** * * *
80350945 GTGTTAGTGTAAGACATGTCTGAGACATGCTTTGGCCT-CGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACG-A
80350992 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA
80351034 TGTGTAGTGT
Statistics
Matches: 108, Mismatches: 21, Indels: 16
0.74 0.14 0.11
Matches are distributed among these distances:
45 2 0.02
46 55 0.51
47 30 0.28
48 20 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGA
Found at i:80352931 original size:55 final size:54
Alignment explanation
Indices: 80352745--80352994 Score: 232
Period size: 55 Copynumber: 4.7 Consensus size: 54
80352735 ACATGGGTAC
* * * *
80352745 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-TT---TT-TA-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAA
* * *
80352794 CTTACCATTTCCATGTCTCGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAA
* * *
80352847 CTCACCAATGCCATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AA
* * * *
80352902 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATA-TTCTTGCCTTAGA-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCT-TTGCCTTATAGAA
* *
80352955 CCTTACCAATAGCCATGCCTTGGCATGGTCTTACATGGTA
1 -CTTACCAAT-GCCATGTCTTGACATGGTCTTACATGGTA
80352995 TCCTGAAACC
Statistics
Matches: 168, Mismatches: 22, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
49 38 0.23
52 4 0.02
53 46 0.27
54 10 0.06
55 70 0.42
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAA
Found at i:80356054 original size:25 final size:25
Alignment explanation
Indices: 80356020--80356069 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
80356010 TAAAGCATAC
80356020 TTGGAATGGTAAAAAAATTCTCATT
1 TTGGAATGGTAAAAAAATTCTCATT
80356045 TTGGAATGGTAAAAAAATTCTCATT
1 TTGGAATGGTAAAAAAATTCTCATT
80356070 CATAATCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (25 bp):
TTGGAATGGTAAAAAAATTCTCATT
Found at i:80357305 original size:14 final size:15
Alignment explanation
Indices: 80357267--80357315 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
80357257 ATGATTAATG
*
80357267 TTTAGTTAATTAAGA
1 TTTAATTAATTAAGA
*
80357282 TTTAATTAATTAA-T
1 TTTAATTAATTAAGA
*
80357296 TTTGATTAATTAAGA
1 TTTAATTAATTAAGA
80357311 TTTAA
1 TTTAA
80357316 ACTAAGTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (15 bp):
TTTAATTAATTAAGA
Found at i:80361696 original size:40 final size:40
Alignment explanation
Indices: 80361612--80361710 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
80361602 CTTAGTATCA
* *
80361612 CACACTTAGTGCCACATATAGCCAAAGCTATTCCAATTCG
1 CACACTAAGTGCCACATATAGCCAAAGCTATTCCAATACG
* * * * *
80361652 CACACTAAGTGCTATATATAGCCGAAGCTATCTCGAA-ACT
1 CACACTAAGTGCCACATATAGCCAAAGCTAT-TCCAATACG
80361692 CACACTAAGTGCCAACATA
1 CACACTAAGTGCC-ACATA
80361711 GTTGATTTGT
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
40 40 0.83
41 8 0.17
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.23
Consensus pattern (40 bp):
CACACTAAGTGCCACATATAGCCAAAGCTATTCCAATACG
Found at i:80373566 original size:48 final size:48
Alignment explanation
Indices: 80373299--80373567 Score: 387
Period size: 48 Copynumber: 5.6 Consensus size: 48
80373289 TAAAATACCA
* * * ** *
80373299 ATGCCATGTCCCCGACATGGTCTTACATGAATC-CACATATCATTTCTG
1 ATGCCATGTCCCAGACATGGTCTTACA-CAAGCACACATATCATCGCCG
***
80373347 ATGCCATGTCCCAGACATGGTCTTACATTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCG
* * *
80373395 ATGCCATGTCCCAGACATGGTCTTACACTAGCACAAATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCG
*
80373443 ATGCCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCG
*
80373491 ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCTCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCG
*
80373539 ATGCCATGTCCCAGACATGGTTTTACACA
1 ATGCCATGTCCCAGACATGGTCTTACACA
80373568 GGCGCATTTA
Statistics
Matches: 201, Mismatches: 19, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
47 1 0.00
48 200 1.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCG
Found at i:80376742 original size:24 final size:23
Alignment explanation
Indices: 80376715--80376760 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 23
80376705 ACCCAAATGT
80376715 CGAAAT-TTTCGAATGAAATTTTCA
1 CGAAATATTTCG--TGAAATTTTCA
80376739 CGAAATGATTTCGTGAAATTTT
1 CGAAAT-ATTTCGTGAAATTTT
80376761 AAACCATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
24 15 0.75
26 5 0.25
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (23 bp):
CGAAATATTTCGTGAAATTTTCA
Found at i:80382456 original size:80 final size:80
Alignment explanation
Indices: 80382372--80382520 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80382362 TATGGTAACC
* * * *
80382372 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80382436 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80382452 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80382517 CCGG
66 CCGG
80382521 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80382462 original size:40 final size:38
Alignment explanation
Indices: 80382413--80382520 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80382403 ATCACGATTT
*
80382413 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80382453 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80382493 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80382521 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80384395 original size:12 final size:13
Alignment explanation
Indices: 80384378--80384415 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
80384368 ATCCTAGAAT
80384378 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
80384390 ATTAAGAACACATA
1 ATTAAGAACA-AGA
80384404 ATTAAGAACAAG
1 ATTAAGAACAAG
80384416 TTAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:80386819 original size:11 final size:10
Alignment explanation
Indices: 80386801--80386834 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
80386791 ATAGAACCTA
80386801 AAATTAAAAT
1 AAATTAAAAT
80386811 AATATTAAAAT
1 AA-ATTAAAAT
*
80386822 AAAATAAAAT
1 AAATTAAAAT
80386832 AAA
1 AAA
80386835 AAGTACTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (10 bp):
AAATTAAAAT
Found at i:80394153 original size:39 final size:40
Alignment explanation
Indices: 80394041--80394167 Score: 195
Period size: 40 Copynumber: 3.2 Consensus size: 40
80394031 TACTCGTTCA
* *
80394041 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACC
*
80394081 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
*
80394121 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
80394160 AATGCCTT
1 AATGCCTT
80394168 TGGATCTCAG
Statistics
Matches: 81, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 33 0.41
40 46 0.57
41 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
Found at i:80394183 original size:79 final size:80
Alignment explanation
Indices: 80394041--80394189 Score: 187
Period size: 79 Copynumber: 1.9 Consensus size: 80
80394031 TACTCGTTCA
* *
80394041 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTCAACCCGGAT
*
80394106 TTAGTAACTCGCACC
66 ATAGTAACTCGCACC
* * * **
80394121 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACCAATGCCTT-TGGATCTCAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTCAACCCGG
80394183 ATATAGT
64 ATATAGT
80394190 CACTTAGCAC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 4 0.07
79 43 0.73
80 12 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTCAACCCGGAT
ATAGTAACTCGCACC
Found at i:80394207 original size:79 final size:80
Alignment explanation
Indices: 80394039--80394207 Score: 175
Period size: 79 Copynumber: 2.1 Consensus size: 80
80394029 GCTACTCGTT
* *
80394039 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTCAACCCGG
* *
80394104 ATTTAGTAACTCGCAC
65 ATATAGTAACTAGCAC
* * * * **
80394120 CAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACCAATGCCTT-TGGATCTCAGTCCG
1 CAAAGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTCAACCCG
*
80394182 GATATAGTCACTTAGCA-
64 GATATAGTAAC-TAGCAC
80394199 CAAAGCCTT
1 CAAAGCCTT
80394208 TGGGGGCTTA
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
78 4 0.05
79 53 0.73
80 13 0.18
81 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTCAACCCGGA
TATAGTAACTAGCAC
Found at i:80396031 original size:40 final size:40
Alignment explanation
Indices: 80395975--80396214 Score: 291
Period size: 40 Copynumber: 6.1 Consensus size: 40
80395965 CGGAATTTAA
** *
80395975 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80396015 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80396055 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80396093 CCGAAT-TAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80396130 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
80396170 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80396210 CCGGA
1 CCGGA
80396215 CATCATTCGA
Statistics
Matches: 177, Mismatches: 14, Indels: 18
0.85 0.07 0.09
Matches are distributed among these distances:
37 35 0.20
38 25 0.14
39 22 0.12
40 83 0.47
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80404035 original size:39 final size:40
Alignment explanation
Indices: 80403950--80404073 Score: 125
Period size: 39 Copynumber: 3.2 Consensus size: 40
80403940 GCTACTCGTT
* *
80403950 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGACCGGTTATAGTAACTCGCA
*
80403990 CAAATGCCTTCGGGACTTA-ACTGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGACCGG-TTATAGTAACTCGCA
* * * *
80404029 CCAATG-CTTCGGG-CTTAGCCCAG-AATTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGACCGGTTA-TAGTAACTCGCA
80404066 CAAATGCC
1 CAAATGCC
80404074 NTCAAACGCA
Statistics
Matches: 70, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
37 16 0.23
38 14 0.20
39 20 0.29
40 20 0.29
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGACCGGTTATAGTAACTCGCA
Found at i:80404072 original size:37 final size:38
Alignment explanation
Indices: 80403978--80404072 Score: 113
Period size: 37 Copynumber: 2.5 Consensus size: 38
80403968 AGCCCGGTTA
** *
80403978 TAGTAACTCGCACAAATGCCTTCGGGACTTAACTGGATT
1 TAGTAACTCGCACAAATG-CTTCGGGACTTAACCAGAAT
* *
80404017 TAGTAACTCGCACCAATGCTTCGGG-CTTAGCCCAGAAT
1 TAGTAACTCGCACAAATGCTTCGGGACTTA-ACCAGAAT
80404055 TAGT-ACTCGCACAAATGC
1 TAGTAACTCGCACAAATGC
80404073 CNTCAAACGC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
37 17 0.35
38 15 0.31
39 17 0.35
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (38 bp):
TAGTAACTCGCACAAATGCTTCGGGACTTAACCAGAAT
Found at i:80410924 original size:73 final size:71
Alignment explanation
Indices: 80410755--80410934 Score: 227
Period size: 71 Copynumber: 2.5 Consensus size: 71
80410745 AATTTTTATT
* * ** * *
80410755 TTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCAATT
1 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAATGAGGTAATCTCAATT
*
80410820 TTTGTG
66 TCTGTG
* **
80410826 TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACAATGAGGTAATCTCAAT
1 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACAATGAGGTAATCTCAAT
80410891 TTCTGT-
65 TTCTGTG
*
80410897 TTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TT-TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
80410935 ACCTTTTAAT
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
71 39 0.42
72 26 0.28
73 27 0.29
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (71 bp):
TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACAATGAGGTAATCTCAATT
TCTGTG
Done.