Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 279 of 292
Found at i:80411078 original size:123 final size:126
Alignment explanation
Indices: 80410838--80411185 Score: 427
Period size: 123 Copynumber: 2.8 Consensus size: 126
80410828 TTAATTTCAA
** * * *
80410838 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACAATGAGGTAATCTCAATTTCTGTTTGTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCAATCTCAATTTATATTTGT-A
*
80410903 AGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
65 AGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
* * * * *
80410965 CTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGCATTTTTAATTTATATTT-T-A
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCAATCTCAATTTATATTTGTAA
**
80411028 -AATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTTCTACTTTTTCAAAATCAG
66 GAATCAACTCATATTGCGAGAGGTGAGTTGAA-CCTTTTAATTTCTACTTTTTCAAAATCAG
* * * * *
80411088 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTAATTTCAATTTCT-GTTGTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCAATCTCAATTTATATTTGT--
* * *
80411152 AAAAAATCAACTCGTATTGCGAGAGGCGAGTTGA
64 -AAGAATCAACTCATATTGCGAGAGGTGAGTTGA
80411186 GCCTCAGGTC
Statistics
Matches: 188, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
122 4 0.02
123 105 0.56
124 1 0.01
126 1 0.01
127 52 0.28
128 24 0.13
129 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (126 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGCAATCTCAATTTATATTTGTAA
GAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
Found at i:80411304 original size:91 final size:90
Alignment explanation
Indices: 80411134--80411530 Score: 246
Period size: 91 Copynumber: 4.6 Consensus size: 90
80411124 GCCGAGGTAA
*
80411134 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
* *
80411199 CGCCGAGGTATTTTCAATTTCCGTT
66 CGCCGAGCTATTTTCAATTTCCGTC
** * *
80411224 TTTCAATTTCTGCCTT-TCAAAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
1 TTTCAATTTCTG--TTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TC
** * * *
80411287 ACGTGCTGAGCTGTTTTCAATTTCTGTC
63 ACACGCCGAGCTATTTTCAATTTCCGTC
** * * *
80411315 TTTCAA------AAG--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
* * * **
80411372 CACTGAGGTA-TTT---TTT-C-AA
66 CGCCGAGCTATTTTCAATTTCCGTC
** * * * *
80411391 TTT--ATATT-T-TT-CAAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCAC
1 TTTCAAT-TTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCAC
* * * ** * *
80411451 ATGTCGAGGTATTTTCAAAATCTGTT
65 ACGCCGAGCTATTTTCAATTTCCGTC
* * * *
80411477 TTTCAATTTCTATTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCT
80411531 TGGCTCACGT
Statistics
Matches: 237, Mismatches: 47, Indels: 48
0.71 0.14 0.14
Matches are distributed among these distances:
74 1 0.00
76 3 0.01
78 3 0.01
80 49 0.21
81 6 0.03
82 46 0.19
83 1 0.00
84 1 0.00
86 3 0.01
87 2 0.01
88 38 0.16
89 2 0.01
90 14 0.06
91 66 0.28
92 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (90 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
CGCCGAGCTATTTTCAATTTCCGTC
Found at i:80411552 original size:88 final size:89
Alignment explanation
Indices: 80411383--80411869 Score: 277
Period size: 88 Copynumber: 5.6 Consensus size: 89
80411373 ACTGAGGTAT
* * * * *
80411383 TTTTTCAATTTATATTTTTCAAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 TTTTTCAATTTCTA-TTTTC--AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCT
*
80411448 CACATGT-C-GAGGTATTTTCAAAATCTG
63 CAC--GTACTGAGCTATTTTCAAAATCTG
80411475 TTTTTCAATTTCTATTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCAC
1 TTTTTCAATTTCTATTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCAC
80411539 GTACTGAGCTATTTT--AAA----
66 GTACTGAGCTATTTTCAAAATCTG
* * * *
80411557 --TTTCTATTT-T-TTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAG-CTT--TTT
1 TTTTTCAATTTCTATTTTC-AAAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTC
** * * ** * * ** **
80411615 AATTTCTGCGAGA-GTT-GAGTTGAG
64 ACGTACTGAGCTATTTTCAAAATCTG
* **
80411639 TCTTTT-AATTTCTATTTTTC-AAAAATCAACTCATATTGCGAG-AGATGAGTTGAACCTCCAG-
1 T-TTTTCAATTTCTA-TTTTCAAAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCT-TGGC
* * *
80411700 TCACATA-TCGAGGTATTTTCAAAATCTA
62 TCACGTACT-GAGCTATTTTCAAAATCTG
* * * * *
80411728 CTTTTCAAGTT-AAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
1 TTTTTCAATTTCTATTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCAC
** **
80411792 GCGCTGAGCTATTTTCAATTTCTG
66 GTACTGAGCTATTTTCAAAATCTG
* * * * * * * * *
80411816 TTTTT-AATGTCTGTTTTTAGAGAGTCAATTCATATTGCGAAAAATGAGTTGAGC
1 TTTTTCAATTTCTATTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
80411870 TCAGGATCAC
Statistics
Matches: 299, Mismatches: 66, Indels: 64
0.70 0.15 0.15
Matches are distributed among these distances:
77 2 0.01
78 14 0.05
79 1 0.00
80 16 0.05
81 28 0.09
83 1 0.00
84 29 0.10
85 11 0.04
86 6 0.02
87 20 0.07
88 145 0.48
89 8 0.03
91 5 0.02
92 13 0.04
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38
Consensus pattern (89 bp):
TTTTTCAATTTCTATTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCAC
GTACTGAGCTATTTTCAAAATCTG
Found at i:80411574 original size:253 final size:246
Alignment explanation
Indices: 80411080--80411820 Score: 804
Period size: 253 Copynumber: 3.0 Consensus size: 246
80411070 CTACTTTTTC
* * * *
80411080 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CACGC-C-GAGGTA-ATTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-GATCACACACTGAGGTATTTTTCAAT
* * * * * *
80411141 TTCT-GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGA
65 TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGTCACATGTCGA
** * * **
80411205 GGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATTGACTCATATTGCGAGAGGT
129 GGTATTTTCAAAATCTGTTTTTCAATTTCT-ACTTTC-AAAAAATCAACTCATATTGCGAGAGGT
* * ****
80411270 GAGTTGAGCCTTGGCTCACGTGCTGAGCTGTTTTCAATTTCTGTCTTTCAAAAGAAA
192 GAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCT-TTTTTTTTCA-AAA
80411327 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTA-TTTTTCAAT
* * *
80411392 TTATATTTTTCAAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCG
65 TTCTATTTTTC-AAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGTCACATGTCG
* *
80411457 AGGTATTTTCAAAATCTGTTTTTCAATTTCTATTTTC-AAAAATCAACTCATATTGCGAGAAGTG
128 AGGTATTTTCAAAATCTGTTTTTCAATTTCTACTTTCAAAAAATCAACTCATATTGCGAGAGGTG
* *
80411521 AGTTGAGCCTTGGCTCACGTACTGAGCTATTTTAAATTTCTATTTTTTTTCAAAA
193 AGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCT-TTTTTTTTCAAAA
* * * * * *
80411576 AAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTTGAGT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT-A-T
*
80411640 CTTTT-AATTTCTATTTTTC--AAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCCA-GT
57 -TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAG-TGAGTTGAGCCT-CAGGT
* ** * * *
80411701 CACATATCGAGGTATTTTCAAAATCTACTTTTCAAGTT-AAGTTTCAAAAAATCAACTCATATTG
119 CACATGTCGAGGTATTTTCAAAATCTGTTTTTCAATTTCTACTTTCAAAAAATCAACTCATATTG
* *
80411765 CGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTT
184 CGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTTTTTTT
80411821 AATGTCTGTT
Statistics
Matches: 422, Mismatches: 53, Indels: 33
0.83 0.10 0.06
Matches are distributed among these distances:
246 2 0.00
247 40 0.09
248 1 0.00
249 42 0.10
250 68 0.16
251 13 0.03
252 21 0.05
253 208 0.49
254 3 0.01
255 5 0.01
256 15 0.04
257 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (246 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTCAATT
TCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGTCACATGTCGAGG
TATTTTCAAAATCTGTTTTTCAATTTCTACTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTTTTTTTTTCAAAA
Found at i:80411627 original size:30 final size:30
Alignment explanation
Indices: 80411591--80411651 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
80411581 CAACTCATAT
80411591 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
80411621 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
80411651 T
1 T
80411652 ATTTTTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.43
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:80417591 original size:15 final size:14
Alignment explanation
Indices: 80417549--80417598 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
80417539 ATAACTTTGA
*
80417549 ATGCAAATGATGTG
1 ATGCAAATGATGAG
80417563 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
80417578 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
80417592 ATGCAAA
1 ATGCAAA
80417599 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:80421446 original size:3 final size:3
Alignment explanation
Indices: 80421440--80421690 Score: 108
Period size: 3 Copynumber: 84.3 Consensus size: 3
80421430 AAAATACAAC
* * * *
80421440 AAT AAT AAT AGT AA- AAG ATAT AAT AA- CAT AAT AAT -AT AAT AGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
80421483 AAT AGT AAC AAT -AT GAC GAT AAT AGT AAA AAT AAT -AT ATT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * **
80421527 AAT AGT AAT AA- AAGT AGT GCT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
80421572 AAT AAT AAT AAT AAT AAT AAT AAT GAT GAT -CT ATT AAGT TAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
* * * * *
80421617 GAA- AAT AAT GAT AAT GAT GAT -AT ATT AGAT AAT AAT AGT AA- AAT
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
* *
80421661 AAT AAGT AAC AAT AAT AAAT TAT AAT AAT A
1 AAT AA-T AAT AAT AAT -AAT AAT AAT AAT A
80421691 GTGATGAGAA
Statistics
Matches: 186, Mismatches: 44, Indels: 36
0.70 0.17 0.14
Matches are distributed among these distances:
2 18 0.10
3 151 0.81
4 17 0.09
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:80421446 original size:22 final size:22
Alignment explanation
Indices: 80421395--80421455 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
80421385 ATAAGTAAAT
* *
80421395 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
80421416 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
80421438 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
80421456 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:80421709 original size:16 final size:16
Alignment explanation
Indices: 80421690--80421721 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80421680 TTATAATAAT
80421690 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
80421706 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
80421722 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:80421854 original size:16 final size:15
Alignment explanation
Indices: 80421825--80421867 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
80421815 TATACGTATG
*
80421825 AAAAATAATGATAGT
1 AAAAATAATAATAGT
80421840 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
80421856 AATAATAATAAT
1 AAAAATAATAAT
80421868 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:80421970 original size:3 final size:3
Alignment explanation
Indices: 80421962--80421994 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
80421952 ACACTACCAT
80421962 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
80421995 TAGAAATACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:80422096 original size:3 final size:3
Alignment explanation
Indices: 80422088--80422119 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
80422078 AAATATACAC
80422088 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
80422120 TTAAAATGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:80422643 original size:22 final size:23
Alignment explanation
Indices: 80422596--80422653 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
80422586 CAAAAAAAAG
* *
80422596 AAAAATCCCCTCTTGAATCTCAA
1 AAAAATCTCTTCTTGAATCTCAA
80422619 AAAAATCTCTTCTTGAATCTC-A
1 AAAAATCTCTTCTTGAATCTCAA
*
80422641 AAAAATTTCTTCT
1 AAAAATCTCTTCT
80422654 CTCCAAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 13 0.41
23 19 0.59
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.34
Consensus pattern (23 bp):
AAAAATCTCTTCTTGAATCTCAA
Found at i:80422864 original size:13 final size:13
Alignment explanation
Indices: 80422842--80422876 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
80422832 GAGATTAGGT
80422842 TTTTTCTTTTTTGA
1 TTTTT-TTTTTTGA
80422856 -TTTTTTTTTTGA
1 TTTTTTTTTTTGA
80422868 TTTTTTTTT
1 TTTTTTTTT
80422877 GGGTTGGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.86
Consensus pattern (13 bp):
TTTTTTTTTTTGA
Found at i:80422877 original size:11 final size:12
Alignment explanation
Indices: 80422843--80422876 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
80422833 AGATTAGGTT
80422843 TTTTCTTTTTTGA
1 TTTT-TTTTTTGA
80422856 TTTTTTTTTTGA
1 TTTTTTTTTTGA
80422868 TTTTTTTTT
1 TTTTTTTTT
80422877 GGGTTGGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTTGA
Found at i:80432555 original size:13 final size:14
Alignment explanation
Indices: 80432533--80432570 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
80432523 ATATTTGGAT
80432533 TAAATATTTAA-TAA
1 TAAAT-TTTAATTAA
*
80432547 TAAATTTTAATTGA
1 TAAATTTTAATTAA
80432561 TAAATTTTAA
1 TAAATTTTAA
80432571 ATTGTTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
TAAATTTTAATTAA
Found at i:80439026 original size:22 final size:21
Alignment explanation
Indices: 80438982--80439027 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
80438972 TGATTGTTAA
*
80438982 ATTTTAAAATGTTTTAATTAT
1 ATTTTAAAATGTTTAAATTAT
80439003 ATTTTAAAAT-TATTAATATTAT
1 ATTTTAAAATGT-TTAA-ATTAT
80439025 ATT
1 ATT
80439028 AATTTATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 1 0.05
21 13 0.59
22 8 0.36
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTTTAAAATGTTTAAATTAT
Found at i:80440368 original size:31 final size:31
Alignment explanation
Indices: 80440310--80440369 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
80440300 CTTAACAGCC
* * ** *
80440310 CAATGACTTAAATAATTTTTTTTAAATAGCT
1 CAATAACTTAAATAAATAGTTTAAAATAGCT
80440341 CAATAACTTAAATAAATAGTTTAAAATAG
1 CAATAACTTAAATAAATAGTTTAAAATAG
80440370 TTTAATGATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.47, C:0.08, G:0.07, T:0.38
Consensus pattern (31 bp):
CAATAACTTAAATAAATAGTTTAAAATAGCT
Found at i:80441995 original size:8 final size:8
Alignment explanation
Indices: 80441982--80442095 Score: 57
Period size: 8 Copynumber: 14.6 Consensus size: 8
80441972 ATGGTATAAT
80441982 TTATAAAA
1 TTATAAAA
80441990 TTATAAAA
1 TTATAAAA
*
80441998 TT-TAACTA
1 TTATAA-AA
80442006 TT-TAAAA
1 TTATAAAA
80442013 TTTATAAAGA
1 -TTATAAA-A
80442023 -TAT-AAA
1 TTATAAAA
*
80442029 CTATTAAAA
1 TTA-TAAAA
*
80442038 TAATAAAA
1 TTATAAAA
80442046 TTAT---A
1 TTATAAAA
80442051 TT-TAAAA
1 TTATAAAA
80442058 TTTATAAAA
1 -TTATAAAA
*
80442067 ATAT-AAA
1 TTATAAAA
*
80442074 CTATTAAAA
1 TTA-TAAAA
*
80442083 TAATAAAA
1 TTATAAAA
80442091 TTATA
1 TTATA
80442096 TTTTTATTAT
Statistics
Matches: 82, Mismatches: 10, Indels: 28
0.68 0.08 0.23
Matches are distributed among these distances:
4 1 0.01
5 3 0.04
6 1 0.01
7 14 0.17
8 45 0.55
9 17 0.21
10 1 0.01
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.39
Consensus pattern (8 bp):
TTATAAAA
Found at i:80442064 original size:45 final size:45
Alignment explanation
Indices: 80441985--80442098 Score: 183
Period size: 45 Copynumber: 2.5 Consensus size: 45
80441975 GTATAATTTA
* *
80441985 TAAAATTATAAAATTTAACTATTTAAAATTTATAAAGATATAAACTAT
1 TAAAATAATAAAA-TT-A-TATTTAAAATTTATAAAAATATAAACTAT
80442033 TAAAATAATAAAATTATATTTAAAATTTATAAAAATATAAACTAT
1 TAAAATAATAAAATTATATTTAAAATTTATAAAAATATAAACTAT
80442078 TAAAATAATAAAATTATATTT
1 TAAAATAATAAAATTATATTT
80442099 TTATTATAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
45 49 0.77
46 1 0.02
47 2 0.03
48 12 0.19
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (45 bp):
TAAAATAATAAAATTATATTTAAAATTTATAAAAATATAAACTAT
Found at i:80442529 original size:15 final size:16
Alignment explanation
Indices: 80442504--80442534 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
80442494 TAATAGTTAA
80442504 ATTTCAAATTTAATTT
1 ATTTCAAATTTAATTT
80442520 ATTT-AAATTTAATTT
1 ATTTCAAATTTAATTT
80442535 TCAATTATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTCAAATTTAATTT
Found at i:80446525 original size:19 final size:20
Alignment explanation
Indices: 80446501--80446539 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
80446491 TCTTATTTTT
80446501 TATTTGTTTTT-TGTTTTAA
1 TATTTGTTTTTATGTTTTAA
80446520 TATTTGTTTTTATGTTTTAA
1 TATTTGTTTTTATGTTTTAA
80446540 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (20 bp):
TATTTGTTTTTATGTTTTAA
Found at i:80446557 original size:25 final size:23
Alignment explanation
Indices: 80446501--80446565 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 23
80446491 TCTTATTTTT
*
80446501 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
*
80446520 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
80446543 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
80446566 GTTTTTTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 2 0.05
23 6 0.15
24 3 0.08
25 11 0.28
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:80448518 original size:44 final size:44
Alignment explanation
Indices: 80448469--80448556 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
80448459 GGGCTAAACC
*
80448469 AATAACTAATAATATTCTCGTTGTTTACCCATGTAAGTAACGAG
1 AATAACTAATAATATTCTCATTGTTTACCCATGTAAGTAACGAG
80448513 AATAACTAATAATATTCTCATTGTTTACCCATGTAAGTAACGAG
1 AATAACTAATAATATTCTCATTGTTTACCCATGTAAGTAACGAG
80448557 TTAATTGTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (44 bp):
AATAACTAATAATATTCTCATTGTTTACCCATGTAAGTAACGAG
Found at i:80455052 original size:31 final size:30
Alignment explanation
Indices: 80455017--80455082 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
80455007 GCACAAGTTT
*
80455017 TAAAATTTCA-AAATTCAAAAAGTATAGGGAC
1 TAAAA-TTCACAAATTC-AAAAGTATAAGGAC
* *
80455048 TAAAATTGACCAATTCAAAAGTATAAGGAC
1 TAAAATTCACAAATTCAAAAGTATAAGGAC
80455078 TAAAA
1 TAAAA
80455083 CTGATCAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 21 0.68
31 10 0.32
ACGTcount: A:0.53, C:0.11, G:0.12, T:0.24
Consensus pattern (30 bp):
TAAAATTCACAAATTCAAAAGTATAAGGAC
Found at i:80461621 original size:29 final size:31
Alignment explanation
Indices: 80461585--80461645 Score: 83
Period size: 29 Copynumber: 2.0 Consensus size: 31
80461575 TTTATACTTA
80461585 AAATTTTA-ATGATTTTTA-A-TTTTTAAAAT
1 AAATTTTATAT-ATTTTTAGAGTTTTTAAAAT
80461614 AAATTTTATATATTTTTAGAGTTTTTTAAAAT
1 AAATTTTATATATTTTTAGAG-TTTTTAAAAT
80461646 TTTAAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
29 15 0.54
30 3 0.11
32 10 0.36
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (31 bp):
AAATTTTATATATTTTTAGAGTTTTTAAAAT
Found at i:80462815 original size:26 final size:26
Alignment explanation
Indices: 80462781--80462840 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
80462771 TAAAACCCCT
80462781 ACCCAAACCTTAGCCCAACTACCCAAA
1 ACCC-AACCTTAGCCCAACTACCCAAA
*
80462808 ACCCAACCTTAGCCTAACTACCCAAA
1 ACCCAACCTTAGCCCAACTACCCAAA
80462834 ACCCAAC
1 ACCCAAC
80462841 ACTTGACCCA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 28 0.88
27 4 0.12
ACGTcount: A:0.40, C:0.45, G:0.03, T:0.12
Consensus pattern (26 bp):
ACCCAACCTTAGCCCAACTACCCAAA
Found at i:80464003 original size:3 final size:3
Alignment explanation
Indices: 80463995--80464073 Score: 149
Period size: 3 Copynumber: 26.0 Consensus size: 3
80463985 TCCATGTTTT
80463995 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
80464043 TTA TTA TTA TTA TTA TTA TTA TTA TGTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
80464074 GTTTACGTTT
Statistics
Matches: 75, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 72 0.96
4 3 0.04
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:80484741 original size:21 final size:21
Alignment explanation
Indices: 80484717--80484763 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
80484707 ATATAGTAAC
*
80484717 AACAATAATAATAATAATAAT
1 AACAATAATAATAATAAAAAT
* *
80484738 AACAATACTAATTATAAAAAT
1 AACAATAATAATAATAAAAAT
80484759 AACAA
1 AACAA
80484764 GGACATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (21 bp):
AACAATAATAATAATAAAAAT
Found at i:80485771 original size:1 final size:1
Alignment explanation
Indices: 80485765--80485789 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
80485755 TGTCTGTTTC
80485765 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
80485790 AACTTTGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:80486638 original size:21 final size:21
Alignment explanation
Indices: 80486593--80486651 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
80486583 AGAATTAATT
* *
80486593 TATAATTAATTTTTATAAAAAA
1 TATAATTAAATTAT-TAAAAAA
*
80486615 TATAATTAAATTATTAAAATA
1 TATAATTAAATTATTAAAAAA
*
80486636 TATTATTAAATTATTA
1 TATAATTAAATTATTA
80486652 GATTAAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TATAATTAAATTATTAAAAAA
Found at i:80486661 original size:21 final size:22
Alignment explanation
Indices: 80486595--80486666 Score: 69
Period size: 21 Copynumber: 3.3 Consensus size: 22
80486585 AATTAATTTA
*
80486595 TAATT-AATTTTTATAAA-AAAT
1 TAATTAAATTATTA-AAATAAAT
*
80486616 ATAATTAAATTATTAAAATATAT
1 -TAATTAAATTATTAAAATAAAT
* *
80486639 T-ATTAAATTATTAGATTAAAT
1 TAATTAAATTATTAAAATAAAT
80486660 TAATTAA
1 TAATTAA
80486667 TAAAACTGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
21 18 0.43
22 14 0.33
23 10 0.24
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (22 bp):
TAATTAAATTATTAAAATAAAT
Found at i:80490683 original size:16 final size:16
Alignment explanation
Indices: 80490662--80490693 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80490652 AAAAGAAAAG
*
80490662 ATATCTGATTAATGAA
1 ATATCTGATAAATGAA
80490678 ATATCTGATAAATGAA
1 ATATCTGATAAATGAA
80490694 TCGGTAACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.34
Consensus pattern (16 bp):
ATATCTGATAAATGAA
Found at i:80493772 original size:48 final size:48
Alignment explanation
Indices: 80493713--80493808 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
80493703 ATTGAGCTAC
*
80493713 GGCCTAAAGATACTGGTAGCTAGGTAGATTCTGGATTTGAGTTTGGTA
1 GGCCTAAAGATACTGGTAGCTAGGTAGATTCTGGATTGGAGTTTGGTA
80493761 GGCCTAAAGATACTGGTAGCTAGGTAGATTCTGGATTGGAGTTTGGTA
1 GGCCTAAAGATACTGGTAGCTAGGTAGATTCTGGATTGGAGTTTGGTA
80493809 AGCTCAGCCT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.25, C:0.10, G:0.32, T:0.32
Consensus pattern (48 bp):
GGCCTAAAGATACTGGTAGCTAGGTAGATTCTGGATTGGAGTTTGGTA
Found at i:80494731 original size:3 final size:3
Alignment explanation
Indices: 80494725--80494756 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
80494715 AAAAAAAAAG
80494725 AGA AGA AGA AGA AGA AGA A-A A-A AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
80494757 AAAAAGGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:80494751 original size:13 final size:13
Alignment explanation
Indices: 80494718--80494760 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
80494708 GAGTGAAAAA
80494718 AAAAAAG-AGAAG
1 AAAAAAGAAGAAG
*
80494730 -AAGAAGAAGAAG
1 AAAAAAGAAGAAG
80494742 AAAAAAGAAGAAG
1 AAAAAAGAAGAAG
80494755 AAAAAA
1 AAAAAA
80494761 AGGTTAGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 5 0.19
12 5 0.19
13 17 0.63
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAGAAG
Found at i:80494751 original size:16 final size:15
Alignment explanation
Indices: 80494730--80494761 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
80494720 AAAAGAGAAG
80494730 AAGAAGAAGAAGAAAA
1 AAGAAGAAGAA-AAAA
80494746 AAGAAGAAGAAAAAA
1 AAGAAGAAGAAAAAA
80494761 A
1 A
80494762 GGTTAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
AAGAAGAAGAAAAAA
Found at i:80495702 original size:22 final size:21
Alignment explanation
Indices: 80495654--80495704 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
80495644 ATTTTGTTTC
* * *
80495654 TAAAGTTTTGAAATAATTTAT
1 TAAATTTTTGAAATAATTAAA
80495675 TGAAATTTTTGAAATAAATTAAA
1 T-AAATTTTTGAAAT-AATTAAA
80495698 TAAATTT
1 TAAATTT
80495705 AATTTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 18 0.72
23 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (21 bp):
TAAATTTTTGAAATAATTAAA
Found at i:80497583 original size:99 final size:99
Alignment explanation
Indices: 80497412--80497590 Score: 254
Period size: 99 Copynumber: 1.8 Consensus size: 99
80497402 TATCTTCAGC
* * *
80497412 CCACCATCGTACTCCGCTCCTTCCGACTCGTATCCACCACAGTACTCTGCTCCTTCCAGCTCGTA
1 CCACCACCGTACTCCGCTCCTTCCGACTCGTATCCACCACAGTACTCTACTCCTCCCAGCTCGTA
80497477 TCCACCACCATACTCCGCTCCTTCTAGCTCGTAT
66 TCCACCACCATACTCCGCTCCTTCTAGCTCGTAT
* * * * *
80497511 CCACCACCGTACTCTGCTCCTTCC-AGCTCGTATCCATCGACA-TTCTCTACTCCTCCCGGCTTG
1 CCACCACCGTACTCCGCTCCTTCCGA-CTCGTATCCA-CCACAGTACTCTACTCCTCCCAGCTCG
80497574 TATCCACCACCATACTC
64 TATCCACCACCATACTC
80497591 TACTCCTCTA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
98 1 0.01
99 65 0.93
100 4 0.06
ACGTcount: A:0.17, C:0.45, G:0.11, T:0.27
Consensus pattern (99 bp):
CCACCACCGTACTCCGCTCCTTCCGACTCGTATCCACCACAGTACTCTACTCCTCCCAGCTCGTA
TCCACCACCATACTCCGCTCCTTCTAGCTCGTAT
Found at i:80497597 original size:99 final size:99
Alignment explanation
Indices: 80497412--80497610 Score: 251
Period size: 99 Copynumber: 2.0 Consensus size: 99
80497402 TATCTTCAGC
* * *
80497412 CCACCATCGTACTCCGCTCCTTCCGACTCGTATCCACCACAGTACTCTGCTCCTTCCAGCTCGTA
1 CCACCACCGTACTCCGCTCCTTCCGACTCGTATCCACCACAGTACTCTACTCCTCCCAGCTCGTA
*
80497477 TCCACCACCATACTCCGCTCCTTCTAG-CTCGTAT
66 TCCACCACCATACTCCACTCC-TCTAGACTCGTAT
* * * * *
80497511 CCACCACCGTACTCTGCTCCTTCC-AGCTCGTATCCATCGACA-TTCTCTACTCCTCCCGGCTTG
1 CCACCACCGTACTCCGCTCCTTCCGA-CTCGTATCCA-CCACAGTACTCTACTCCTCCCAGCTCG
* *
80497574 TATCCACCACCATACTCTACTCCTCTAGAGTCGTAT
64 TATCCACCACCATACTCCACTCCTCTAGACTCGTAT
80497610 C
1 C
80497611 TACCGTCGTT
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
98 6 0.07
99 76 0.88
100 4 0.05
ACGTcount: A:0.18, C:0.43, G:0.11, T:0.28
Consensus pattern (99 bp):
CCACCACCGTACTCCGCTCCTTCCGACTCGTATCCACCACAGTACTCTACTCCTCCCAGCTCGTA
TCCACCACCATACTCCACTCCTCTAGACTCGTAT
Found at i:80497610 original size:33 final size:33
Alignment explanation
Indices: 80497412--80497597 Score: 207
Period size: 33 Copynumber: 5.6 Consensus size: 33
80497402 TATCTTCAGC
* * *
80497412 CCACCATCGTACTCCGCTCCTTCC-GACTCGTAT
1 CCACCACCATACTCTGCTCCTTCCAG-CTCGTAT
80497445 CCACCA-CAGTACTCTGCTCCTTCCAGCTCGTAT
1 CCACCACCA-TACTCTGCTCCTTCCAGCTCGTAT
* *
80497478 CCACCACCATACTCCGCTCCTTCTAGCTCGTAT
1 CCACCACCATACTCTGCTCCTTCCAGCTCGTAT
*
80497511 CCACCACCGTACTCTGCTCCTTCCAGCTCGTAT
1 CCACCACCATACTCTGCTCCTTCCAGCTCGTAT
* * * * * *
80497544 CCATCGA-CATTCTCTACTCCTCCCGGCTTGTAT
1 CCA-CCACCATACTCTGCTCCTTCCAGCTCGTAT
*
80497577 CCACCACCATACTCTACTCCT
1 CCACCACCATACTCTGCTCCT
80497598 CTAGAGTCGT
Statistics
Matches: 132, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
32 3 0.02
33 124 0.94
34 5 0.04
ACGTcount: A:0.17, C:0.45, G:0.10, T:0.28
Consensus pattern (33 bp):
CCACCACCATACTCTGCTCCTTCCAGCTCGTAT
Found at i:80497806 original size:22 final size:23
Alignment explanation
Indices: 80497780--80497825 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
80497770 CAACCAAACC
80497780 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
80497802 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
80497825 A
1 A
80497826 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:80497831 original size:23 final size:23
Alignment explanation
Indices: 80497787--80497831 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
80497777 ACCAATTCAA
*
80497787 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
80497810 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
80497832 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:80502485 original size:67 final size:65
Alignment explanation
Indices: 80502401--80502591 Score: 265
Period size: 65 Copynumber: 2.8 Consensus size: 65
80502391 AGACACTGTA
80502401 GTAGCTAGGTCACATGTGTGATACGGATGTATCCCATGTAGACAAGAGAGCTACGTGAAAGATAA
1 GTAGCTAGGTCACATGTGTGATA-GGATGTA-CCCATGTAGACAAGAGAGCTACGTGAAAGATAA
80502466 AT
64 AT
*
80502468 GTAGCTAGGTCACATGTGTGATAGGATGTACCCATGTAGACAAGAGAGCTATGTGAAAGATAAAT
1 GTAGCTAGGTCACATGTGTGATAGGATGTACCCATGTAGACAAGAGAGCTACGTGAAAGATAAAT
* * * *
80502533 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCACATGTGTGA-T---AG-GATGTAC-CCATGTAGACAAGAGAGCTACG
80502592 AGACAAATCG
Statistics
Matches: 112, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
65 53 0.47
66 8 0.07
67 23 0.21
69 2 0.02
70 5 0.04
71 21 0.19
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.23
Consensus pattern (65 bp):
GTAGCTAGGTCACATGTGTGATAGGATGTACCCATGTAGACAAGAGAGCTACGTGAAAGATAAAT
Found at i:80509608 original size:65 final size:66
Alignment explanation
Indices: 80509480--80509670 Score: 276
Period size: 65 Copynumber: 2.8 Consensus size: 66
80509470 ACACTATGTA
80509480 GTAGCTAGGTCACATGTGTGATACGGATGTATCCCATGTAGACAAGAGAGCTACGTGAAAGATAA
1 GTAGCTAGGTCACATGTGTGATACGGATGTA-CCCATGTAGACAAGAGAGCTACGTGAAAGATAA
80509545 AT
65 AT
80509547 GTAGCTAGGTCACATGTGTGATACGGATGTA-CCATGTAGACAAGAGAGCTACGTGAAAGATAAA
1 GTAGCTAGGTCACATGTGTGATACGGATGTACCCATGTAGACAAGAGAGCTACGTGAAAGATAAA
80509611 T
66 T
* * * * *
80509612 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCACATGTGTGA-T--ACG-GATGTAC-CCATGTAGACAAGAGAGCTACG
80509671 AGACAAATCG
Statistics
Matches: 113, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
65 53 0.47
66 1 0.01
67 31 0.27
68 2 0.02
69 4 0.04
71 22 0.19
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (66 bp):
GTAGCTAGGTCACATGTGTGATACGGATGTACCCATGTAGACAAGAGAGCTACGTGAAAGATAAA
T
Found at i:80514243 original size:14 final size:14
Alignment explanation
Indices: 80514224--80514252 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
80514214 TGCTGAGGTC
80514224 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
80514238 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
80514252 T
1 T
80514253 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:80514442 original size:73 final size:73
Alignment explanation
Indices: 80514263--80514486 Score: 349
Period size: 73 Copynumber: 3.0 Consensus size: 73
80514253 CGTAAAAAAA
* *
80514263 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
80514328 CTGTTTTTC
65 CTGTTTTTC
*
80514337 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
*
80514402 TGTTTGTC
66 TGTTTTTC
* * * *
80514410 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
80514475 TCTGTTTTTC
64 TCTGTTTTTC
80514485 AA
1 AA
80514487 TTTCTGTTCG
Statistics
Matches: 138, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
73 55 0.40
74 53 0.38
75 30 0.22
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTC
Found at i:80514485 original size:14 final size:14
Alignment explanation
Indices: 80514466--80514494 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
80514456 TGCTGAGGTC
80514466 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
80514480 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
80514494 T
1 T
80514495 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:80514536 original size:166 final size:165
Alignment explanation
Indices: 80514337--80515477 Score: 684
Period size: 167 Copynumber: 6.9 Consensus size: 165
80514327 TCTGTTTTTC
* *
80514337 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-ATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
* * *
80514401 CTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
66 CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACACGCTGAGGTA
* *
80514466 TTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAA
129 ATTTCAATTTCTGTTTGTCAATTTCTGTTCGTAAAAA
* *
80514503 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
* * *
80514568 CTGTTTTTCAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
66 CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAAT
80514633 TTCAATTTC----TG-----TT-TG-TC-------
131 TTCAATTTCTGTTTGTCAATTTCTGTTCGTAAAAA
* * * *
80514650 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCT-TTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATATTTAAA
80514713 TTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
63 TTTCTG---------TT-TG-TC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
80514778 CAGG-ACACGCTGAGGTATTTTTAAATTTC----TG-----TT-T-TTC------A
112 C-GGCACACGCTGAGGTA-ATTTCAATTTCTGTTTGTCAATTTCTGTTCGTAAAAA
* * * * *
80514816 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGAGATGATGAGGTA-ATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
* * * *** ** * *
80514880 CTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCT-TTTA-ATTTCT-A-CT-T
66 CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACA-CGCTGAGGTAA
** * ** ** ***
80514940 TTTCAAAATCAGCTCATAT-TGCGAGAGGTGAGTT-G--AGCC
130 TTTCAATTTCTG-T--T-TGT-C-A-ATTTCTGTTCGTAAAAA
** ** * * * ** * * * *
80514979 TCAGGTCACGCTGAGGTATT-CTTA-ATTTTTGTTGTTTCAAAAATCAACTCATGTTGA-AAGAA
1 AAAAATCA-ACTCA--TATTGC-GAGA--GGTG-AG-TT----GAGC--CTCA-G--GACACG--
* * * *
80515041 GTGAGTTA-AGCCTTTTAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAG
47 CTGAGGTATA---TTTAAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * **
80515105 CCTAGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCT-TCAATTTCTGTTCGT--AAA
109 CCTCGG--CACACGCTGAGGTAATTTCAATTTCTGTT-TGTCAATTTCTGTTCGTAAAAA
*
80515162 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
* * *
80515227 CTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
66 CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACACGCTGAGGTA
* *
80515292 TTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAA
129 ATTTCAATTTCTGTTTGTCAATTTCTGTTCGTAAAAA
* *
80515329 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
* * * *
80515394 CTGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACGCTGAGGTAAT
66 CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAAT
80515459 TTCAATTTCTGTTTGTCAA
131 TTCAATTTCTGTTTGTCAA
80515478 AAATTAACTC
Statistics
Matches: 783, Mismatches: 104, Indels: 177
0.74 0.10 0.17
Matches are distributed among these distances:
143 8 0.01
145 1 0.00
146 4 0.01
147 39 0.05
148 45 0.06
149 12 0.02
151 1 0.00
153 2 0.00
154 4 0.01
155 4 0.01
156 2 0.00
157 2 0.00
158 2 0.00
159 2 0.00
160 2 0.00
161 1 0.00
163 4 0.01
164 76 0.10
165 171 0.22
166 93 0.12
167 178 0.23
168 3 0.00
169 4 0.01
170 1 0.00
171 4 0.01
173 4 0.01
175 4 0.01
176 1 0.00
177 4 0.01
178 3 0.00
179 9 0.01
180 5 0.01
181 2 0.00
182 58 0.07
183 6 0.01
184 1 0.00
185 7 0.01
186 2 0.00
187 2 0.00
188 10 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (165 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTAAATTT
CTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTAAT
TTCAATTTCTGTTTGTCAATTTCTGTTCGTAAAAA
Found at i:80514603 original size:240 final size:240
Alignment explanation
Indices: 80514169--80514921 Score: 1348
Period size: 240 Copynumber: 3.1 Consensus size: 240
80514159 CTTTTCAAGG
*
80514169 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGCTCACATGCTGAGGTCTTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTT
80514234 CTGTTTTTCAATTTCTGTTCGTAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 CTGTTTTTCAATTTCTGTTCGT--AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
80514299 TCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTG
129 TCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTG
80514364 AGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
194 AGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
*
80514411 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTT
*
80514476 CTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTC
66 CTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
80514541 AGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCTAGAGGTGAG
131 AGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
80514606 TTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
196 TTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
*
80514651 AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTT
*
80514716 CTGTTCTTCAATTTCTGTTCGT--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
66 CTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
80514779 AGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGA
131 AGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGA
* * * *
80514844 GTTGAGCCTCAGGAGATGATGAGGTAATTTCAATTTCTGTTTGTCA
195 GTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
* *
80514890 AGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGA
80514922 ACCTTTTAAT
Statistics
Matches: 495, Mismatches: 15, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
238 76 0.15
239 97 0.20
240 237 0.48
242 85 0.17
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (240 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATTT
CTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
AGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
TTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
Found at i:80514674 original size:73 final size:73
Alignment explanation
Indices: 80514503--80514720 Score: 319
Period size: 73 Copynumber: 2.9 Consensus size: 73
80514493 TTCGTAAAAA
* * *
80514503 AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
*
80514568 CTGTTTTTC
65 CTGTTTGTC
* *
80514577 AAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
80514642 TGTTTGTC
66 TGTTTGTC
* * * *
80514650 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
80514715 TCTGTT
64 TCTGTT
80514721 CTTCAATTTC
Statistics
Matches: 130, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
73 54 0.42
74 51 0.39
75 25 0.19
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:80514727 original size:14 final size:14
Alignment explanation
Indices: 80514708--80514735 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80514698 CTGAGGTCTT
80514708 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80514722 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80514736 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:80514877 original size:164 final size:162
Alignment explanation
Indices: 80514577--80514884 Score: 465
Period size: 164 Copynumber: 1.9 Consensus size: 162
80514567 TCTGTTTTTC
* * *
80514577 AAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTC
* * * **
80514642 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGG--CACATGATGAGGTAA
80514707 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
129 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
*
80514741 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTAAATTT
* *
80514806 CTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGG-AGATGATGAGGTA
65 CTGTTTGTC-AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTC-GGCACATGATGAGGTA
80514870 ATTTCAATTTCTGTT
128 ATTTCAATTTCTGTT
80514885 TGTCAAGAAT
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
164 76 0.58
165 16 0.12
166 36 0.28
167 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (162 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTC
TGTTTGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCACATGATGAGGTAATT
TCAATTTCTGTTCTTCAATTTCTGTTCGTAAA
Found at i:80514921 original size:73 final size:75
Alignment explanation
Indices: 80514725--80514921 Score: 272
Period size: 75 Copynumber: 2.6 Consensus size: 75
80514715 TCTGTTCTTC
* * *
80514725 AATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 AATTTCTGTTTGT-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATG
*
80514790 AGGTATTTTTA
65 AGGTATATTTA
* * * *
80514801 AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGAGATGATGA
1 AATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGA
*
80514866 GGTA-ATTTC
66 GGTATATTTA
* *
80514875 AATTTCTGTTTGTC-AAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
80514922 ACCTTTTAAT
Statistics
Matches: 108, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
73 30 0.28
74 16 0.15
75 51 0.47
76 11 0.10
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (75 bp):
AATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGA
GGTATATTTA
Found at i:80515083 original size:54 final size:55
Alignment explanation
Indices: 80515000--80515107 Score: 155
Period size: 54 Copynumber: 2.0 Consensus size: 55
80514990 TGAGGTATTC
* * *
80515000 TTAATTTTTGTTGTTTCAAAAATCAACTCATGTTGAAAGAAGTGAGTTAAGCCTT
1 TTAATTTCTGTTGTGTCAAAAATCAACTCATATTGAAAGAAGTGAGTTAAGCCTT
** *
80515055 TTAATTTCTGTT-TGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTAATTTCTGTTGTGTCAAAAATCAACTCATATTGAAAGAAGTGAGTTAAGCCT
80515108 AGGCTCACAT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
54 36 0.77
55 11 0.23
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (55 bp):
TTAATTTCTGTTGTGTCAAAAATCAACTCATATTGAAAGAAGTGAGTTAAGCCTT
Found at i:80515093 original size:128 final size:127
Alignment explanation
Indices: 80514796--80515141 Score: 403
Period size: 128 Copynumber: 2.7 Consensus size: 127
80514786 GCTGAGGTAT
* ** *
80514796 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGAGAT
1 TTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
* * ** * *
80514861 GATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACC
64 GCTGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGAAAGAAGTGAGTTGAACC
* *
80514925 TTTTAATTTCTACTTTTTC-AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACG
1 TTTTAATTTCT-GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACG
* * * *
80514989 CTGAGGT-ATTCTTAATTTTTGTTGTTTCAAAAATCAACTCATGTTGAAAGAAGTGAGTT-AAGC
65 CTGAGGTAATT-TCAATTTCTGTT-TGTCAAAAATCAACTCATATTGAAAGAAGTGAGTTGAA-C
80515052 C
127 C
* *
80515053 TTTTAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT-AGGCTCACA
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC-
**
80515117 TGCTGAGGTCTTTTCAATTTCTGTT
64 -GCTGAGGTAATTTCAATTTCTGTT
80515142 CTTCAATTTC
Statistics
Matches: 185, Mismatches: 23, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
126 3 0.02
127 66 0.36
128 86 0.46
129 10 0.05
130 18 0.10
131 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.36
Consensus pattern (127 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
TGAGGTAATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGAAAGAAGTGAGTTGAACC
Found at i:80515148 original size:14 final size:14
Alignment explanation
Indices: 80515129--80515156 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80515119 CTGAGGTCTT
80515129 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80515143 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80515157 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:80515251 original size:165 final size:166
Alignment explanation
Indices: 80515053--80515943 Score: 773
Period size: 167 Copynumber: 5.5 Consensus size: 166
80515043 GAGTTAAGCC
* *
80515053 TTTT-AATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTAGGCTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACA
*
80515117 TGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGT-AAAAAAAATCAACTCATATTGC
66 TGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAACCAACTCATATTGC
80515181 GAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
131 GAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
*
80515217 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACA
*
80515282 TGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAACCAACTCATATTG
66 TGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGT-AAAAAAAAACCAACTCATATTG
80515347 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
130 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
* *
80515384 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGG--GACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACA
* * * **
80515447 CGCTGAGG-----T-AA-------T-TTCAATTTCTGTTTGT---CAAAAATTAACTCATATTGC
66 TGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAACCAACTCATATTGC
* *
80515495 GAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCT
131 GAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAT
* ** ** * * ** * * *** **
80515533 TTTT-AATTTCTGCTTTTC---AAT-TTCTGTTTTTTC-A-ATTTATATTTTTCAAAAATCAACT
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGT-GA--GTT-AAGCCTCGGCT
* *** * *** ** * ** **** * *
80515591 CATATTGC-GAGATGTGAGTTGAGCCT-TG-GGTTCACATGTC-G-AGGTATTTTCAAAATCTAC
62 CACA-TGCTGAG--GTCTTTTCAATTTCTGTTCTTCA-ATTTCTGTTCGTA-AAAAAAAACCAAC
* * *
80515651 T--T-TTGCGATAGGTGAGTTAAGCCTCGGGACACGCTGAGGTA-
122 TCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
* * * * *
80515692 ATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACA
*
80515757 TGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTG
66 TGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGT-AAAAAAAAACCAACTCATATTG
*
80515822 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAT
130 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
* * * * *
80515859 TTTTAAATTTCTGTTTTTCAAAAATCAACTCACATTGCGAAAGGCGAGTTGAGCCTCGG--GACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACA
* **
80515922 CGCTGAGGTAATTTCAATTTCT
66 TGCTGAGGTCTTTTCAATTTCT
80515944 ATTTGTCAAA
Statistics
Matches: 578, Mismatches: 99, Indels: 99
0.74 0.13 0.13
Matches are distributed among these distances:
142 2 0.00
143 2 0.00
144 6 0.01
145 5 0.01
146 6 0.01
147 36 0.06
148 18 0.03
149 18 0.03
150 1 0.00
151 15 0.03
152 1 0.00
155 1 0.00
156 1 0.00
159 5 0.01
160 30 0.05
161 11 0.02
162 42 0.07
163 23 0.04
164 11 0.02
165 141 0.24
166 37 0.06
167 166 0.29
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (166 bp):
TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACA
TGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAACCAACTCATATTGC
GAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
Found at i:80515269 original size:74 final size:73
Alignment explanation
Indices: 80515162--80515312 Score: 232
Period size: 74 Copynumber: 2.0 Consensus size: 73
80515152 TGTTCGTAAA
*
80515162 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTATTTTTAAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCACACGCTGAGGT-CTTTTAAATT
80515226 TCTGTTTTTC
64 TCTGTTTTTC
* *
80515236 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CACACGCTGAGGTCTTTTAAATT
80515301 TCTGTTTTTC
64 TCTGTTTTTC
80515311 AA
1 AA
80515313 TTTCTGTTCG
Statistics
Matches: 71, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
73 2 0.03
74 38 0.54
75 20 0.28
76 11 0.15
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACACGCTGAGGTCTTTTAAATTTC
TGTTTTTC
Found at i:80515311 original size:14 final size:14
Alignment explanation
Indices: 80515292--80515320 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
80515282 TGCTGAGGTC
80515292 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
80515306 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
80515320 T
1 T
80515321 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:80515416 original size:167 final size:165
Alignment explanation
Indices: 80515053--80515477 Score: 712
Period size: 165 Copynumber: 2.6 Consensus size: 165
80515043 GAGTTAAGCC
* *
80515053 TTTT-AATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTAGGCTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACA
* *
80515117 TGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCG
66 TGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAACCAACTCATATTGCG
80515182 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
131 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
*
80515217 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACA
80515282 TGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAACCAACTCATATTG
66 TGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTTCGT--AAAAAAAACCAACTCATATTG
80515347 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
129 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
* *
80515384 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGG--GACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACA
* ** *
80515447 CGCTGAGGTAATTTCAATTTCTGTTTGTCAA
66 TGCTGAGGTCTTTTCAATTTCTGTTTTTCAA
80515478 AAATTAACTC
Statistics
Matches: 246, Mismatches: 12, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
164 4 0.02
165 128 0.52
167 114 0.46
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (165 bp):
TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGCTCACA
TGCTGAGGTCTTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAACCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
Found at i:80515430 original size:74 final size:72
Alignment explanation
Indices: 80515329--80515552 Score: 304
Period size: 74 Copynumber: 3.0 Consensus size: 72
80515319 TTCGTAAAAA
*
80515329 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTT-AATTT
80515394 CTGTTTTTC
64 CTGTTTTTC
* * * *
80515403 AAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTTAATTTC
*
80515468 TGTTTGTC
65 TGTTTTTC
* * *
80515476 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTTAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTTAATT
*
80515541 TCTGCTTTTC
63 TCTGTTTTTC
80515551 AA
1 AA
80515553 TTTCTGTTTT
Statistics
Matches: 131, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
72 2 0.02
73 48 0.37
74 53 0.40
75 28 0.21
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTTAATTTCT
GTTTTTC
Found at i:80515497 original size:240 final size:240
Alignment explanation
Indices: 80515162--80515974 Score: 1106
Period size: 240 Copynumber: 3.4 Consensus size: 240
80515152 TGTTCGTAAA
* * * * *
80515162 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACGCTGAGGTA-ATTTCAATTT
* *
80515227 CTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
65 CTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
*
80515292 TTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAACCAACTCATATTGCGAGAGGTGA
130 TTTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGA
80515357 GTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
195 GTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
80515403 AAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
80515468 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
* * ** *
80515533 TTTTAATTTCTGCTTTTCAATTTCTGTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTG
131 TTTCAATTTCTGTTTTTCAATTTCTG-TTCGT-AA---A-A-----AAAAAATCAACTCATATTG
* * * * *
80515598 CGAGATGTGAGTTGAGCCT----------TG-GG----TTCACATGTCGAGGTATTTTC
185 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTC--TGT-TTTTC
* *
80515642 -AAAATCTACT--T-TTGCGATAGGTGAGTTAAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
80515703 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
*
80515768 TTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
131 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
*
80515833 TTGAGCCTCAGGACACGCTGAGTTATTTTTAAATTTCTGTTTTTC
196 TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
* * *
80515878 AAAAATCAACTCACATTGCGAAAGGCGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
* * *
80515943 TATTTGTCAAAAATTAACTCATTTTACGAGAG
66 TGTTTGTCAAAAATTAACTCATATTGCGAGAG
80515975 TTTTACAGAG
Statistics
Matches: 499, Mismatches: 40, Indels: 67
0.82 0.07 0.11
Matches are distributed among these distances:
224 36 0.07
229 1 0.00
230 1 0.00
233 2 0.00
234 5 0.01
235 138 0.28
236 13 0.03
237 11 0.02
238 11 0.02
239 12 0.02
240 174 0.35
241 56 0.11
242 2 0.00
245 1 0.00
246 1 0.00
251 35 0.07
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (240 bp):
AAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
TGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCT
TTTCAATTTCTGTTTTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAG
TTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC
Found at i:80515502 original size:73 final size:74
Alignment explanation
Indices: 80515329--80515515 Score: 295
Period size: 73 Copynumber: 2.5 Consensus size: 74
80515319 TTCGTAAAAA
* * *
80515329 AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATATTTAAATTT
*
80515394 CTGTTTTTC
66 CTGTTTGTC
* * *
80515403 AAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACGCTGAGGTA-ATTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATATTTAAATTT
80515467 CTGTTTGTC
66 CTGTTTGTC
*
80515476 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
80515516 CTCACATGCT
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 53 0.51
74 50 0.49
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATATTTAAATTT
CTGTTTGTC
Found at i:80515554 original size:14 final size:15
Alignment explanation
Indices: 80515529--80515570 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
80515519 ACATGCTGAG
*
80515529 GTCTTTTTAATTTCT
1 GTCTTTTCAATTTCT
80515544 G-CTTTTCAATTTCT
1 GTCTTTTCAATTTCT
*
80515558 GTTTTTTCAATTT
1 GTCTTTTCAATTT
80515571 ATATTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (15 bp):
GTCTTTTCAATTTCT
Found at i:80515566 original size:15 final size:14
Alignment explanation
Indices: 80515532--80515581 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
80515522 TGCTGAGGTC
80515532 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
80515545 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
80515559 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTG
80515574 TTTTTCAA
1 TTTTTCAA
80515582 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:80515788 original size:14 final size:14
Alignment explanation
Indices: 80515769--80515796 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80515759 CTGAGGTCTT
80515769 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80515783 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
80515797 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:80515911 original size:74 final size:73
Alignment explanation
Indices: 80515804--80515963 Score: 221
Period size: 74 Copynumber: 2.2 Consensus size: 73
80515794 TTCGTAAAAA
* * * * *
80515804 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTATTTTTAAATTT
1 AAAAATCAACTCACATTGCGAAAGGCGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTAAATTT
* *
80515869 CTGTTTTTC
65 CTATTTGTC
* *
80515878 AAAAATCAACTCACATTGCGAAAGGCGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCACATTGCGAAAGGCGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTC
80515943 TATTTGTC
66 TATTTGTC
*
80515951 AAAAATTAACTCA
1 AAAAATCAACTCA
80515964 TTTTACGAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
73 27 0.36
74 49 0.64
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (73 bp):
AAAAATCAACTCACATTGCGAAAGGCGAGTTGAGCCTCAGGACACGCTGAGGTAATTTAAATTTC
TATTTGTC
Found at i:80516561 original size:30 final size:30
Alignment explanation
Indices: 80516525--80516669 Score: 168
Period size: 30 Copynumber: 4.8 Consensus size: 30
80516515 ACTTTTCTCA
* *
80516525 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTCTCCACCACCAAATCC
* * *
80516555 ACTAGCCACTCCTTTTCTACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAAATCC
80516585 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTCTCCACCACCAAATCC
** * *
80516615 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-CTCCACCACCAAATCC
*
80516645 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-CTCCACCACCA
80516670 CTTGTACCTA
Statistics
Matches: 100, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 3 0.03
30 97 0.97
ACGTcount: A:0.28, C:0.47, G:0.04, T:0.21
Consensus pattern (30 bp):
ACTAGCCACACCTTCTCCACCACCAAATCC
Found at i:80516931 original size:15 final size:15
Alignment explanation
Indices: 80516911--80516940 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
80516901 GATCAAAGCA
80516911 AAAGAGGTTTCTTTG
1 AAAGAGGTTTCTTTG
80516926 AAAGAGGTTTCTTTG
1 AAAGAGGTTTCTTTG
80516941 TCTATTCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (15 bp):
AAAGAGGTTTCTTTG
Found at i:80517306 original size:25 final size:25
Alignment explanation
Indices: 80517185--80517401 Score: 92
Period size: 22 Copynumber: 8.5 Consensus size: 25
80517175 TTGTTATTAT
*
80517185 TATATTTCTTAATATTATATTA--TA
1 TATATTT-TTAATACTATATTATGTA
* *
80517209 TATATTCTTT--TAATATATTA-G-G
1 TATATT-TTTAATACTATATTATGTA
* * *
80517231 TATATTTTAAATTCTATATTACGCATA
1 TATATTTTTAATACTATATTATG--TA
* *
80517258 TATATATATTTTATACTATTTTATGTA
1 TATAT-T-TTTAATACTATATTATGTA
* * *
80517285 TATATCTTTAATATTATATTATTTATATATA
1 TATAT-TTT--TA--ATACTATAT-TATGTA
** *
80517316 TATATTTTTACATGTTATCTTATGTA
1 TATATTTTTA-ATACTATATTATGTA
*
80517342 TATA-TCTT-A-ACTATATTATGTA
1 TATATTTTTAATACTATATTATGTA
* *
80517364 TGTATTTTTAACACTATATTATGTA
1 TATATTTTTAATACTATATTATGTA
*
80517389 CATATTTTTAATA
1 TATATTTTTAATA
80517402 TTATCACGTA
Statistics
Matches: 147, Mismatches: 28, Indels: 35
0.70 0.13 0.17
Matches are distributed among these distances:
21 2 0.01
22 28 0.19
23 12 0.08
24 10 0.07
25 27 0.18
26 11 0.07
27 20 0.14
28 4 0.03
29 12 0.08
30 11 0.07
31 10 0.07
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (25 bp):
TATATTTTTAATACTATATTATGTA
Found at i:80517308 original size:30 final size:28
Alignment explanation
Indices: 80517268--80517349 Score: 78
Period size: 30 Copynumber: 2.9 Consensus size: 28
80517258 TATATATATT
*
80517268 TTATACTATTTTATGTATATATCTTTAATA
1 TTATATTATTTTATGTATATATCTTT--TA
*
80517298 TTATATTATTTATATATATATAT-TTTTA
1 TTATATTATTT-TATGTATATATCTTTTA
* * *
80517326 -CATGTTATCTTATGTATATATCTT
1 TTATATTATTTTATGTATATATCTT
80517350 AACTATATTA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
26 10 0.23
27 9 0.20
28 2 0.05
30 13 0.30
31 10 0.23
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.59
Consensus pattern (28 bp):
TTATATTATTTTATGTATATATCTTTTA
Found at i:80517312 original size:14 final size:15
Alignment explanation
Indices: 80517255--80517322 Score: 61
Period size: 15 Copynumber: 4.5 Consensus size: 15
80517245 TATATTACGC
* *
80517255 ATATATATATATTTT
1 ATATATTTATATTAT
80517270 ATACTATTT-TATGTAT
1 ATA-TATTTATAT-TAT
*
80517286 ATATCTTTAATATTAT
1 ATATATTT-ATATTAT
80517302 AT-TATTTATA-TAT
1 ATATATTTATATTAT
80517315 ATATATTT
1 ATATATTT
80517323 TTACATGTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 5 0.11
14 8 0.18
15 14 0.32
16 14 0.32
17 3 0.07
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (15 bp):
ATATATTTATATTAT
Found at i:80517357 original size:54 final size:54
Alignment explanation
Indices: 80517196--80517360 Score: 132
Period size: 54 Copynumber: 3.1 Consensus size: 54
80517186 ATATTTCTTA
* * * * *
80517196 ATATTATATTATATATAT-TCTTTTA-A-TATATTAGGTATAT-T-TTAAATTCT
1 ATATTAT-TTATATATATATATTTTATACTATCTTATGTATATATCTTTAATACT
*** * *
80517246 ATATTACGCATATATATATATTTTATACTATTTTATGTATATATCTTTAATATT
1 ATATTATTTATATATATATATTTTATACTATCTTATGTATATATCTTTAATACT
80517300 ATATTATTTATATATATATATTTT-TACATGTTATCTTATGTATATATC-TT-A-ACT
1 ATATTATTTATATATATATATTTTATAC----TATCTTATGTATATATCTTTAATACT
80517354 ATATTAT
1 ATATTAT
80517361 GTATGTATTT
Statistics
Matches: 92, Mismatches: 14, Indels: 14
0.77 0.12 0.12
Matches are distributed among these distances:
49 8 0.09
50 12 0.13
51 1 0.01
52 12 0.13
53 4 0.04
54 36 0.39
55 1 0.01
56 2 0.02
57 16 0.17
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (54 bp):
ATATTATTTATATATATATATTTTATACTATCTTATGTATATATCTTTAATACT
Found at i:80517361 original size:22 final size:24
Alignment explanation
Indices: 80517335--80517393 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
80517325 ACATGTTATC
80517335 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
80517357 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
80517382 TTATGTACATAT
1 TTATGTATATAT
80517394 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:80517578 original size:16 final size:15
Alignment explanation
Indices: 80517554--80517601 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
80517544 TAATTATTAT
*
80517554 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
80517570 TATTTTAATATTTTA
1 TATTTTAATATTTTA
80517585 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
80517601 T
1 T
80517602 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:80517589 original size:7 final size:8
Alignment explanation
Indices: 80517554--80517605 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
80517544 TAATTATTAT
*
80517554 TATTCTAA
1 TATTTTAA
*
80517562 TATTTTGA
1 TATTTTAA
80517570 TATTTTAA
1 TATTTTAA
80517578 TATTTT-A
1 TATTTTAA
80517585 TATTTTATA
1 TATTTTA-A
*
80517594 TATTTTAT
1 TATTTTAA
80517602 TATT
1 TATT
80517606 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:80518999 original size:36 final size:37
Alignment explanation
Indices: 80518946--80519015 Score: 115
Period size: 36 Copynumber: 1.9 Consensus size: 37
80518936 GGCTAATTCA
80518946 TGATAAAATTTTATTGATATTTAAATGCTTAATTTCG
1 TGATAAAATTTTATTGATATTTAAATGCTTAATTTCG
* *
80518983 TGATAAAA-TTTGTTGATATTTAACTGCTTAATT
1 TGATAAAATTTTATTGATATTTAAATGCTTAATT
80519016 AGGCTATACT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 23 0.74
37 8 0.26
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (37 bp):
TGATAAAATTTTATTGATATTTAAATGCTTAATTTCG
Found at i:80522785 original size:9 final size:10
Alignment explanation
Indices: 80522765--80522790 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
80522755 TTACCTTTTT
80522765 AAAATTTAAA
1 AAAATTTAAA
80522775 AAAATTTAAA
1 AAAATTTAAA
80522785 AAAATT
1 AAAATT
80522791 ATTTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:80522794 original size:13 final size:13
Alignment explanation
Indices: 80522778--80522802 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80522768 ATTTAAAAAA
80522778 ATTTAAAAAAATT
1 ATTTAAAAAAATT
80522791 ATTTAAAAAAAT
1 ATTTAAAAAAAT
80522803 AAAGCTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATTTAAAAAAATT
Found at i:80524150 original size:5 final size:5
Alignment explanation
Indices: 80524142--80524180 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
80524132 ATTCGTTAAC
* * *
80524142 TCGAC TCGAT TTGAC TCGAT TCGAT TCGAT TCGAT TCGA
1 TCGAT TCGAT TCGAT TCGAT TCGAT TCGAT TCGAT TCGA
80524181 AAAAAATTCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (5 bp):
TCGAT
Found at i:80524822 original size:23 final size:23
Alignment explanation
Indices: 80524791--80524837 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
80524781 CCTAAAAAAA
* *
80524791 CCTTTGTCGTATCCCTTAACCAT
1 CCTTAGTCGCATCCCTTAACCAT
80524814 CCTTAGTCGCATCCCTTAACCAT
1 CCTTAGTCGCATCCCTTAACCAT
80524837 C
1 C
80524838 GTCGGTCGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.19, C:0.38, G:0.09, T:0.34
Consensus pattern (23 bp):
CCTTAGTCGCATCCCTTAACCAT
Found at i:80531181 original size:6 final size:6
Alignment explanation
Indices: 80531164--80531193 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
80531154 AAATAAATTT
80531164 ATTAATA ATTAAA ATTAAA ATTAAA ATTAA
1 ATTAA-A ATTAAA ATTAAA ATTAAA ATTAA
80531194 TTATTATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.78
7 5 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (6 bp):
ATTAAA
Found at i:80531185 original size:12 final size:13
Alignment explanation
Indices: 80531164--80531209 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
80531154 AAATAAATTT
80531164 ATTAATAATTAAA
1 ATTAATAATTAAA
80531177 ATTAA-AATTAAA
1 ATTAATAATTAAA
*
80531189 ATTAATTATTATAA
1 ATTAATAATTA-AA
80531203 A-TAATAA
1 ATTAATAA
80531210 ATTTTATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 12 0.41
13 14 0.48
14 3 0.10
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATTAATAATTAAA
Found at i:80536760 original size:13 final size:13
Alignment explanation
Indices: 80536738--80536788 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
80536728 TTTTTCATTG
*
80536738 CTTTTAAAAAGTA
1 CTTTTGAAAAGTA
80536751 CTTTTGAAAAGT-
1 CTTTTGAAAAGTA
* *
80536763 GTTGTGAAAAAGTA
1 CTTTTG-AAAAGTA
*
80536777 CTTTTGAGAAGT
1 CTTTTGAAAAGT
80536789 GTTTGATATT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
12 4 0.13
13 22 0.73
14 4 0.13
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:80537047 original size:8 final size:8
Alignment explanation
Indices: 80537034--80537076 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
80537024 TATATAAACT
80537034 ATATTTAA
1 ATATTTAA
80537042 ATATTTAA
1 ATATTTAA
80537050 ATATTT-A
1 ATATTTAA
80537057 A-ATTT-A
1 ATATTTAA
*
80537063 ATAATTAA
1 ATATTTAA
80537071 ATATTT
1 ATATTT
80537077 GTAATTAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 6 0.19
7 5 0.16
8 20 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (8 bp):
ATATTTAA
Found at i:80543098 original size:27 final size:28
Alignment explanation
Indices: 80543068--80543124 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
80543058 ATTATATATT
* *
80543068 TTAAACTTCTGAT-TTA-TTATTTTTAAA
1 TTAAACTTAT-ATATTATTTATTTTGAAA
80543095 TT-AACTTATATATTATTTATTTTGAAA
1 TTAAACTTATATATTATTTATTTTGAAA
80543122 TTA
1 TTA
80543125 TTTTATATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
25 2 0.08
26 9 0.36
27 14 0.56
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.56
Consensus pattern (28 bp):
TTAAACTTATATATTATTTATTTTGAAA
Found at i:80552158 original size:46 final size:46
Alignment explanation
Indices: 80552096--80552369 Score: 388
Period size: 46 Copynumber: 6.0 Consensus size: 46
80552086 TTTGACATGA
* * * * * * *
80552096 TGCCATAGTGTCTTTCAACTATAGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *** *
80552142 TACCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
80552188 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * *
80552234 TGTCATGGTATCTTTCAACCATGGTCTTTCATATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
80552280 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
80552326 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
80552370 AGAGCACACT
Statistics
Matches: 206, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.02
46 202 0.98
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:80557886 original size:44 final size:44
Alignment explanation
Indices: 80557836--80557922 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
80557826 AATCACCATG
**
80557836 GCGAATCTTGTCTCCCTAAAGTTA-AAATGGAGCAGATTGAAGTC
1 GCGAATCTCATCTCCCTAAAGTTACAAA-GGAGCAGATTGAAGTC
* * * *
80557880 GCGAATCTCATCTCCTTGAAGTTACAGAGGAGTAGATTGAAGT
1 GCGAATCTCATCTCCCTAAAGTTACAAAGGAGCAGATTGAAGT
80557923 TACAGATCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
44 34 0.94
45 2 0.06
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
GCGAATCTCATCTCCCTAAAGTTACAAAGGAGCAGATTGAAGTC
Found at i:80563016 original size:26 final size:24
Alignment explanation
Indices: 80562987--80563035 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
80562977 CCATTTATAA
*
80562987 AATATATTTAATGAATTTATCATTTT
1 AATATATTGAAT-AATTTAT-ATTTT
80563013 AATATATTGAATAATTTATATTT
1 AATATATTGAATAATTTATATTT
80563036 GCATAATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.18
25 7 0.32
26 11 0.50
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (24 bp):
AATATATTGAATAATTTATATTTT
Found at i:80565422 original size:24 final size:26
Alignment explanation
Indices: 80565394--80565452 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
80565384 ATTTAGATGT
*
80565394 TCATTTTTAAA-TTAAAAAAAATTGA
1 TCATTTTTAAACATAAAAAAAATTGA
* * *
80565419 -CATTCTTAAACATAAGAAAAATTTA
1 TCATTTTTAAACATAAAAAAAATTGA
80565444 TCATTTTTA
1 TCATTTTTA
80565453 TTTCATAAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
24 9 0.33
25 11 0.41
26 7 0.26
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.41
Consensus pattern (26 bp):
TCATTTTTAAACATAAAAAAAATTGA
Found at i:80566858 original size:10 final size:10
Alignment explanation
Indices: 80566822--80566863 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
80566812 TATTAAATAT
80566822 TAAAATTGATA
1 TAAAATT-ATA
**
80566833 TAAGCTTATA
1 TAAAATTATA
80566843 -AAAATTATA
1 TAAAATTATA
80566852 TAAAATTATA
1 TAAAATTATA
80566862 TA
1 TA
80566864 TTTTAATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
9 7 0.27
10 14 0.54
11 5 0.19
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (10 bp):
TAAAATTATA
Found at i:80566860 original size:19 final size:20
Alignment explanation
Indices: 80566823--80566861 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
80566813 ATTAAATATT
**
80566823 AAAATTGATATAAGCTTATA
1 AAAATTGATATAAAATTATA
80566843 AAAATT-ATATAAAATTATA
1 AAAATTGATATAAAATTATA
80566862 TATTTTAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (20 bp):
AAAATTGATATAAAATTATA
Found at i:80568703 original size:5 final size:5
Alignment explanation
Indices: 80568688--80568721 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
80568678 CTGCAGTCGA
80568688 CACGCC CACGC CACGC CACGC CACGC CACGC CAC
1 CACG-C CACGC CACGC CACGC CACGC CACGC CAC
80568722 AGCTCCGCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 24 0.86
6 4 0.14
ACGTcount: A:0.21, C:0.62, G:0.18, T:0.00
Consensus pattern (5 bp):
CACGC
Found at i:80570991 original size:22 final size:22
Alignment explanation
Indices: 80570966--80571034 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 22
80570956 AAGAATTTTC
80570966 AAGTTATCATTTAGATTTAATA
1 AAGTTATCATTTAGATTTAATA
* * * *
80570988 AAGTGAT--TTTCG-TTT-TTC
1 AAGTTATCATTTAGATTTAATA
*
80571006 AAGGTATCATTTAGATTTAATA
1 AAGTTATCATTTAGATTTAATA
80571028 AAGTTAT
1 AAGTTAT
80571035 TTTCATTTTC
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
18 6 0.18
19 3 0.09
20 8 0.24
21 3 0.09
22 13 0.39
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.46
Consensus pattern (22 bp):
AAGTTATCATTTAGATTTAATA
Found at i:80571016 original size:40 final size:40
Alignment explanation
Indices: 80570961--80571043 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
80570951 TTTAAAAGAA
* *
80570961 TTTTCAAGTTATCATTTAGATTTAATAAAGTGATTTTCGT
1 TTTTCAAGGTATCATTTAGATTTAATAAAGTGATTTTCAT
*
80571001 TTTTCAAGGTATCATTTAGATTTAATAAAGTTATTTTCAT
1 TTTTCAAGGTATCATTTAGATTTAATAAAGTGATTTTCAT
80571041 TTT
1 TTT
80571044 CTCTTTCTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (40 bp):
TTTTCAAGGTATCATTTAGATTTAATAAAGTGATTTTCAT
Found at i:80584527 original size:14 final size:14
Alignment explanation
Indices: 80584501--80584535 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
80584491 AATAATTTTT
80584501 AATT-ATTTAAAAA
1 AATTAATTTAAAAA
*
80584514 AATTAATTTTAAAA
1 AATTAATTTAAAAA
80584528 AATTAATT
1 AATTAATT
80584536 AATTATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTAATTTAAAAA
Found at i:80585412 original size:36 final size:36
Alignment explanation
Indices: 80585365--80585442 Score: 156
Period size: 36 Copynumber: 2.2 Consensus size: 36
80585355 GGAAGGTAGA
80585365 TTCTTTTCTTTATAGTAGAGAGCTCTTGATGGTTTT
1 TTCTTTTCTTTATAGTAGAGAGCTCTTGATGGTTTT
80585401 TTCTTTTCTTTATAGTAGAGAGCTCTTGATGGTTTT
1 TTCTTTTCTTTATAGTAGAGAGCTCTTGATGGTTTT
80585437 TTCTTT
1 TTCTTT
80585443 CATTCCTTGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.15, C:0.12, G:0.18, T:0.55
Consensus pattern (36 bp):
TTCTTTTCTTTATAGTAGAGAGCTCTTGATGGTTTT
Found at i:80589154 original size:3 final size:3
Alignment explanation
Indices: 80589146--80589177 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
80589136 CCAACTTTTC
*
80589146 TCA TCA TCA TCA TCA TCA TCA TCG TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
80589178 TTCTTCTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.28, C:0.34, G:0.03, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:80589853 original size:24 final size:24
Alignment explanation
Indices: 80589826--80589878 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
80589816 GATTTTGTTT
80589826 TCAATTATTGAGGTTAATCAGTAA
1 TCAATTATTGAGGTTAATCAGTAA
80589850 TCAATTATTGAGGTTAATCAGTAA
1 TCAATTATTGAGGTTAATCAGTAA
80589874 TCAAT
1 TCAAT
80589879 CTGTCCCGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (24 bp):
TCAATTATTGAGGTTAATCAGTAA
Found at i:80597769 original size:10 final size:10
Alignment explanation
Indices: 80597734--80597781 Score: 55
Period size: 10 Copynumber: 4.7 Consensus size: 10
80597724 ATTAGAAGAG
80597734 AGAAAAATAA
1 AGAAAAATAA
80597744 AGGAGAAAAT-A
1 A-GA-AAAATAA
80597755 AGAAAAATAA
1 AGAAAAATAA
80597765 AGAAATAA-AA
1 AGAAA-AATAA
80597775 AGAAAAA
1 AGAAAAA
80597782 AATTAAATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
9 7 0.21
10 16 0.47
11 6 0.18
12 5 0.15
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (10 bp):
AGAAAAATAA
Found at i:80597782 original size:21 final size:21
Alignment explanation
Indices: 80597734--80597781 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
80597724 ATTAGAAGAG
*
80597734 AGAAAAATAAAGGAGAAAATA
1 AGAAAAATAAAGGAGAAAAAA
80597755 AGAAAAATAAA-GA-AATAAAA
1 AGAAAAATAAAGGAGAA-AAAA
80597775 AGAAAAA
1 AGAAAAA
80597782 AATTAAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 12 0.48
21 11 0.44
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (21 bp):
AGAAAAATAAAGGAGAAAAAA
Found at i:80597980 original size:29 final size:29
Alignment explanation
Indices: 80597937--80598016 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 29
80597927 AAAATGATAA
*
80597937 CGTAAGTGACTAAAATATAATATTTCAAAT
1 CGTAAGTGACTAAAATATAACATTTC-AAT
* *
80597967 -GTAAGTGACCAAAAACATAACATTTCAAT
1 CGTAAGTGA-CTAAAATATAACATTTCAAT
* *
80597996 CATAAGTGACTAAAATGTAAC
1 CGTAAGTGACTAAAATATAAC
80598017 TTGAAGCAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
29 20 0.49
30 21 0.51
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (29 bp):
CGTAAGTGACTAAAATATAACATTTCAAT
Found at i:80616875 original size:27 final size:27
Alignment explanation
Indices: 80616836--80616938 Score: 82
Period size: 27 Copynumber: 3.6 Consensus size: 27
80616826 ATTAAATATG
* *
80616836 ATTATTTTTTTAAAATTATATTTAATA
1 ATTATTATATTAAAATTATATTTAATA
* *
80616863 ATTATTATATTAAAAGATGATTAATTAATTA
1 ATTATTATATT-AAA-ATTA-TATTTAA-TA
*
80616894 ATTAATTATTATT-AAATTATTTTTAATA
1 ATT-ATTA-TATTAAAATTATATTTAATA
* *
80616922 ATAATTCTATTAAAATT
1 ATTATTATATTAAAATT
80616939 TAATAACAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
26 4 0.07
27 17 0.28
28 7 0.12
29 8 0.13
30 9 0.15
31 7 0.12
32 4 0.07
33 4 0.07
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (27 bp):
ATTATTATATTAAAATTATATTTAATA
Found at i:80619319 original size:25 final size:25
Alignment explanation
Indices: 80619274--80619323 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
80619264 GGGCAGAGTG
80619274 GAAAAGTGAAAGAATAGAAAGAAAA
1 GAAAAGTGAAAGAATAGAAAGAAAA
80619299 GAAAAGTAGAAA-AAT-GAAAAGAAAA
1 GAAAAGT-GAAAGAATAG-AAAGAAAA
80619324 TTAATTCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 1 0.04
25 18 0.78
26 4 0.17
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.08
Consensus pattern (25 bp):
GAAAAGTGAAAGAATAGAAAGAAAA
Found at i:80619503 original size:7 final size:7
Alignment explanation
Indices: 80619491--80619515 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
80619481 ATATATATTT
80619491 TTTTAAA
1 TTTTAAA
80619498 TTTTAAA
1 TTTTAAA
80619505 TTTTAAA
1 TTTTAAA
80619512 TTTT
1 TTTT
80619516 TTCTCATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTAAA
Found at i:80624904 original size:20 final size:20
Alignment explanation
Indices: 80624879--80624922 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
80624869 AGAGTGCTTT
80624879 ATATTAAAT-ATCTATAAATA
1 ATATTAAATAAT-TATAAATA
* *
80624899 ATATTATATAATTTTAAATA
1 ATATTAAATAATTATAAATA
80624919 ATAT
1 ATAT
80624923 CCTATATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATTAAATAATTATAAATA
Found at i:80627423 original size:23 final size:24
Alignment explanation
Indices: 80627375--80627425 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
80627365 TTAAATAATT
* *
80627375 TTTTATATAAAAATAAATATGCAA
1 TTTTAAATAAAAACAAATATGCAA
80627399 TTTTAAATAAAAACATAATA-G-AA
1 TTTTAAATAAAAACA-AATATGCAA
80627422 TTTT
1 TTTT
80627426 GATGTCTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.25
24 14 0.58
25 4 0.17
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (24 bp):
TTTTAAATAAAAACAAATATGCAA
Found at i:80635746 original size:3 final size:3
Alignment explanation
Indices: 80635733--80635770 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
80635723 TTGTTAGAAT
* *
80635733 AGC ATC AGC AGC AGC AGC AGC AGC AGC AGG AGC AGC AG
1 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AG
80635771 GCCTAAACGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.34, C:0.29, G:0.34, T:0.03
Consensus pattern (3 bp):
AGC
Found at i:80636892 original size:32 final size:31
Alignment explanation
Indices: 80636857--80636919 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 31
80636847 TTCATGCACG
*
80636857 TGTGTGTGCGTG-TGTGCATATATATATTCA
1 TGTGTGCGCGTGCTGTGCATATATATATTCA
80636887 TGTGTGCGCGTGCTTGTGCATATATATATTCA
1 TGTGTGCGCGTGC-TGTGCATATATATATTCA
80636919 T
1 T
80636920 TTATGATTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 11 0.37
32 19 0.63
ACGTcount: A:0.19, C:0.13, G:0.25, T:0.43
Consensus pattern (31 bp):
TGTGTGCGCGTGCTGTGCATATATATATTCA
Found at i:80639732 original size:3 final size:3
Alignment explanation
Indices: 80639724--80639758 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
80639714 TTCCCTGTGG
80639724 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
80639759 GAGGACAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:80639777 original size:6 final size:6
Alignment explanation
Indices: 80639768--80639796 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
80639758 TGAGGACAAC
80639768 ATTAAA ATTAAA ATTAAA ATTAAA ATTAA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAA
80639797 TATAAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
ATTAAA
Found at i:80639804 original size:18 final size:18
Alignment explanation
Indices: 80639768--80639804 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
80639758 TGAGGACAAC
*
80639768 ATTAAAATTAAAATTAAA
1 ATTAAAATTAAAATAAAA
*
80639786 ATTAAAATTAATATAAAA
1 ATTAAAATTAAAATAAAA
80639804 A
1 A
80639805 AGGTATCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
ATTAAAATTAAAATAAAA
Found at i:80652805 original size:12 final size:12
Alignment explanation
Indices: 80652788--80652812 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80652778 TTCAAGGGGG
80652788 AATGTATTAGAA
1 AATGTATTAGAA
80652800 AATGTATTAGAA
1 AATGTATTAGAA
80652812 A
1 A
80652813 CAATGAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
AATGTATTAGAA
Found at i:80653657 original size:20 final size:20
Alignment explanation
Indices: 80653619--80653670 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
80653609 AGACACATGA
80653619 AAAAAAATACAATATAATACT
1 AAAAAAATA-AATATAATACT
80653640 AAAAAAAT-AATATGAATA-T
1 AAAAAAATAAATAT-AATACT
*
80653659 AATACAAATAAA
1 AA-AAAAATAAA
80653671 CCAATATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 8 0.30
20 9 0.33
21 10 0.37
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAAAATAAATATAATACT
Found at i:80653676 original size:25 final size:25
Alignment explanation
Indices: 80653629--80653677 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
80653619 AAAAAAATAC
*
80653629 AATATAATACTAAAAAAATAATATG
1 AATATAATACTAAAAAAACAATATG
*
80653654 AATATAATAC-AAATAAACCAATAT
1 AATATAATACTAAA-AAAACAATAT
80653678 TTTAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (25 bp):
AATATAATACTAAAAAAACAATATG
Found at i:80657726 original size:3 final size:3
Alignment explanation
Indices: 80657718--80657753 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
80657708 TAAAAACCAT
*
80657718 TCA TCA TCA TCA TCA TCA TCA TCA T-A TCA TTA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
80657754 GAGCAAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39
Consensus pattern (3 bp):
TCA
Found at i:80657893 original size:29 final size:31
Alignment explanation
Indices: 80657858--80657921 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
80657848 ATTTTCATCA
* *
80657858 TATTTAAAG-GATTAAATTA-AATTTT-TAT
1 TATTTTAAGAGATTAAAGTACAATTTTATAT
80657886 TATTTTAAGAGATTAAAGTACAATTTTACTAT
1 TATTTTAAGAGATTAAAGTACAATTTTA-TAT
80657918 TATT
1 TATT
80657922 AATTTAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 8 0.27
29 9 0.30
30 6 0.20
32 7 0.23
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.48
Consensus pattern (31 bp):
TATTTTAAGAGATTAAAGTACAATTTTATAT
Found at i:80659837 original size:53 final size:53
Alignment explanation
Indices: 80659756--80659906 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
80659746 CTTACACGGT
* *
80659756 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
80659811 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
80659864 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
80659907 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:80690672 original size:19 final size:18
Alignment explanation
Indices: 80690650--80690702 Score: 70
Period size: 19 Copynumber: 2.9 Consensus size: 18
80690640 AATTTTTTTT
*
80690650 AAAAAATCGTAAAAAATA
1 AAAAAATCATAAAAAATA
*
80690668 AAAAAATTATAAAAAATTA
1 AAAAAATCATAAAAAA-TA
*
80690687 TAAAAATCATAAAAAA
1 AAAAAATCATAAAAAA
80690703 AAATTAACGA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.21
Consensus pattern (18 bp):
AAAAAATCATAAAAAATA
Done.