Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 281 of 292
Found at i:81012109 original size:47 final size:46
Alignment explanation
Indices: 81012055--81012231 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 46
81012045 TGGTTGAGCA
81012055 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG
* *
81012102 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* * *
81012147 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
81012195 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81012232 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.05
45 1 0.01
46 35 0.32
47 58 0.52
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:81015423 original size:35 final size:35
Alignment explanation
Indices: 81015379--81015545 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
81015369 TCCTCATTGA
** *
81015379 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
81015414 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
81015454 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
81015489 AGTACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
81015524 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
81015546 CTTTGCCATG
Statistics
Matches: 115, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
35 85 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:81015462 original size:75 final size:73
Alignment explanation
Indices: 81015374--81015545 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
81015364 GGTTTTCCTC
** * * **
81015374 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
81015438 TCAGTATGG
65 TCAGTATGG
* *
81015447 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAGTACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
81015512 CTCAGTATGG
64 CTCAGTATGG
81015522 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
81015546 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:81017457 original size:46 final size:45
Alignment explanation
Indices: 81017355--81017521 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 45
81017345 GAGATTTGTG
* * * * *
81017355 TGCCAGTGTAAGACCATGTATGAGACATGGCATCGGCATTGAGACGA
1 TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGA
* *
81017402 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
1 -TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
* *
81017448 TAGCCAGTGTCAGACATGTCTGGGACATGCGTCGG-CTACGAGATG-
1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGA
*
81017493 TGCTAGTGTAAGACATGTCTGGGACATGC
1 TGCCAGTGTAAGACATGTCTGGGACATGC
81017522 GTCAGCACGG
Statistics
Matches: 104, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
44 26 0.25
45 3 0.03
46 52 0.50
47 12 0.12
48 11 0.11
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (45 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
Found at i:81017516 original size:44 final size:44
Alignment explanation
Indices: 81017404--81017564 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 44
81017394 TGAGACGAGG
*
81017404 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAT
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCGG-CTACGAGATG-T
* *
81017449 AGCCAGTGTCAGACATGTCTGGGACATGCGTCGGCTACGAGATGT
1 -GCTAGTGTAAGACATGTCTGGGACATGCGTCGGCTACGAGATGT
* *
81017494 GCTAGTGTAAGACATGTCTGGGACATGCGTCAGC-ACGGTTACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCGTCGGCTAC-G--AGATGT
*
81017540 G-TCAGTGTAAGACCTGTCTGGGACA
1 GCT-AGTGTAAGACATGTCTGGGACA
81017565 CGGCATCGAC
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
43 2 0.02
44 32 0.31
45 4 0.04
46 64 0.63
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCGTCGGCTACGAGATGT
Found at i:81020362 original size:20 final size:18
Alignment explanation
Indices: 81020337--81020373 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
81020327 ATTGCTAAGT
81020337 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
81020357 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
81020374 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:81020982 original size:47 final size:46
Alignment explanation
Indices: 81020928--81021104 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 46
81020918 TGGTTGAGCA
81020928 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG
* *
81020975 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* * *
81021020 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
81021068 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81021105 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.05
45 1 0.01
46 35 0.32
47 58 0.52
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:81024426 original size:126 final size:126
Alignment explanation
Indices: 81024201--81024433 Score: 387
Period size: 126 Copynumber: 1.8 Consensus size: 126
81024191 TTATAGCCTC
* * * *
81024201 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCAACGTGGGAGTTTTTTTCAAAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGCCAACGTGGGAGCTTTTTTCAAAAATTTTACAG
81024266 ACAGTGCATTCTGCTTGAAGCGTTTTCAACACTATTTGTTCATAATCGTCTATTCAGAATT
66 ACAGTGCATTCTGCTTGAAGCGTTTTCAACACTATTTGTTCATAATCGTCTATTCAGAATT
* *
81024327 ATTTTTCTATGAACTACTGTAGCAAAAGAGCGCCCACGTGGGAGCTTTTTTCAAAAATTTTACAG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGCCAACGTGGGAGCTTTTTTCAAAAATTTTACAG
*
81024392 ACAGTGCA-TCATGCTTGAAGCGTTTTCGACACTATTTGTTCA
66 ACAGTGCATTC-TGCTTGAAGCGTTTTCAACACTATTTGTTCA
81024434 AAAACGTCAA
Statistics
Matches: 99, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
125 2 0.02
126 97 0.98
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGCCAACGTGGGAGCTTTTTTCAAAAATTTTACAG
ACAGTGCATTCTGCTTGAAGCGTTTTCAACACTATTTGTTCATAATCGTCTATTCAGAATT
Found at i:81025035 original size:20 final size:20
Alignment explanation
Indices: 81024990--81025047 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
81024980 TTAAACGATT
*
81024990 ATTT-ATCAATTAACCCTAA
1 ATTTAATCAATTAATCCTAA
81025009 A-TTAATCAATTAATCCTAA
1 ATTTAATCAATTAATCCTAA
81025028 ATTTAATCAATTAATCCTAA
1 ATTTAATCAATTAATCCTAA
81025048 TACCCTAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
18 2 0.06
19 16 0.44
20 18 0.50
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTTAATCAATTAATCCTAA
Found at i:81025167 original size:23 final size:23
Alignment explanation
Indices: 81025141--81025190 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
81025131 CCTTAAATTC
*
81025141 TAAACCCTAAAAAATCCTAACCT
1 TAAACCCTAAAAAACCCTAACCT
* * *
81025164 TAAATCTTAAAAAACCCTAACTT
1 TAAACCCTAAAAAACCCTAACCT
81025187 TAAA
1 TAAA
81025191 TTAATTAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (23 bp):
TAAACCCTAAAAAACCCTAACCT
Found at i:81025191 original size:23 final size:23
Alignment explanation
Indices: 81025148--81025191 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
81025138 TTCTAAACCC
*
81025148 TAAAAAATCCTAACCTTAAATCT
1 TAAAAAACCCTAACCTTAAATCT
*
81025171 TAAAAAACCCTAACTTTAAAT
1 TAAAAAACCCTAACCTTAAAT
81025192 TAATTAAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (23 bp):
TAAAAAACCCTAACCTTAAATCT
Found at i:81025518 original size:6 final size:6
Alignment explanation
Indices: 81025504--81025534 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
81025494 TACATTTGCC
*
81025504 CGTTGG CGTTTG CGTTTG CGTTTG CGTTTG C
1 CGTTTG CGTTTG CGTTTG CGTTTG CGTTTG C
81025535 AATATAAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.19, G:0.35, T:0.45
Consensus pattern (6 bp):
CGTTTG
Found at i:81036800 original size:11 final size:11
Alignment explanation
Indices: 81036780--81036810 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
81036770 TATATATTTT
*
81036780 AAAATTATATA
1 AAAATAATATA
81036791 AAAATAATATA
1 AAAATAATATA
81036802 AAAATAATA
1 AAAATAATA
81036811 CAGACAGGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAATAATATA
Found at i:81037730 original size:15 final size:16
Alignment explanation
Indices: 81037710--81037747 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
81037700 TTTATTTGCA
*
81037710 AATA-ATTTTTCTAAG
1 AATATATTTTTATAAG
81037725 AATAATATTTTTATAAG
1 AAT-ATATTTTTATAAG
81037742 AATATA
1 AATATA
81037748 CAATAAGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 3 0.15
16 4 0.20
17 13 0.65
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (16 bp):
AATATATTTTTATAAG
Found at i:81038882 original size:15 final size:15
Alignment explanation
Indices: 81038862--81038890 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
81038852 GATATAAATA
81038862 AAATTTATTATTTTT
1 AAATTTATTATTTTT
81038877 AAATTTATTATTTT
1 AAATTTATTATTTT
81038891 GAATAGTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
AAATTTATTATTTTT
Found at i:81039151 original size:20 final size:21
Alignment explanation
Indices: 81039110--81039154 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
81039100 TATTAGTATG
*
81039110 ATAAAAATAATTTCTAAACAA
1 ATAAAAATAATTTCAAAACAA
81039131 ATAAAAATAA-TT-AAAATCAA
1 ATAAAAATAATTTCAAAA-CAA
81039151 ATAA
1 ATAA
81039155 TCATATGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (21 bp):
ATAAAAATAATTTCAAAACAA
Found at i:81040358 original size:18 final size:18
Alignment explanation
Indices: 81040335--81040371 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
81040325 AGAACCAATT
*
81040335 TGTATAATAATATGAAAA
1 TGTATAAAAATATGAAAA
*
81040353 TGTATAAAAATATTAAAA
1 TGTATAAAAATATGAAAA
81040371 T
1 T
81040372 AAAATTCTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (18 bp):
TGTATAAAAATATGAAAA
Found at i:81059718 original size:11 final size:11
Alignment explanation
Indices: 81059688--81059719 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
81059678 TTTATGTTAT
81059688 AATTTGATGAA
1 AATTTGATGAA
81059699 AATTT-ATGAA
1 AATTTGATGAA
81059709 AATTTGATGAA
1 AATTTGATGAA
81059720 TGCACGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.38
Consensus pattern (11 bp):
AATTTGATGAA
Found at i:81060006 original size:38 final size:38
Alignment explanation
Indices: 81059963--81060039 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
81059953 TTCAGTTACA
* * *
81059963 TATTTATGATCCATGGGTGGAGATGTACATTTACATGC
1 TATTTATGACCCATAGGTGGACATGTACATTTACATGC
81060001 TATTTATGACCCATAGGTGGACATGTACATTTACATGC
1 TATTTATGACCCATAGGTGGACATGTACATTTACATGC
81060039 T
1 T
81060040 TGCGTCGGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (38 bp):
TATTTATGACCCATAGGTGGACATGTACATTTACATGC
Found at i:81063854 original size:20 final size:18
Alignment explanation
Indices: 81063829--81063865 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
81063819 ATTGCTAAGT
81063829 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
81063849 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
81063866 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:81064475 original size:46 final size:46
Alignment explanation
Indices: 81064425--81064595 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
81064415 TGAGCATCCA
*
81064425 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
81064471 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* * *
81064518 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
81064564 AGCTCGTTGAGTTGAGTCCG-GTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81064596 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 12, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 15 0.14
46 47 0.45
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:81068173 original size:35 final size:35
Alignment explanation
Indices: 81068146--81068311 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
81068136 CATGGCAAAG
*
81068146 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
81068181 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
81068216 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
81068256 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
81068291 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
81068312 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:81068265 original size:75 final size:75
Alignment explanation
Indices: 81068146--81068316 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
81068136 CATGGCAAAG
** *
81068146 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
81068205 CCATACTGAGC
65 CCATACCGAGC
81068216 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
81068281 CATACCGAGT
66 CATACCGAGC
**
81068291 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
81068317 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:81077093 original size:29 final size:29
Alignment explanation
Indices: 81077051--81077108 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
81077041 TAAATAAATT
81077051 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTGGAACTACATAGATCTATGGAA
81077080 CTTTTTTGGAACTACATAGATCTATGGAA
1 CTTTTTTGGAACTACATAGATCTATGGAA
81077109 TCGGTTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (29 bp):
CTTTTTTGGAACTACATAGATCTATGGAA
Found at i:81078286 original size:14 final size:14
Alignment explanation
Indices: 81078267--81078294 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81078257 TATTTACCTT
81078267 CGATCAATATTATC
1 CGATCAATATTATC
81078281 CGATCAATATTATC
1 CGATCAATATTATC
81078295 TTTATCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
CGATCAATATTATC
Found at i:81078862 original size:23 final size:23
Alignment explanation
Indices: 81078836--81078881 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
81078826 GGGATATTAG
81078836 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
81078859 ATATTGACTAGTTATATACGAAC
1 ATATTGACTAGTTATATACGAAC
81078882 TCAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (23 bp):
ATATTGACTAGTTATATACGAAC
Found at i:81083555 original size:14 final size:15
Alignment explanation
Indices: 81083536--81083575 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
81083526 GAAGATGGAT
81083536 AAATAAA-AAAAAAG
1 AAATAAATAAAAAAG
*
81083550 AAATAAATAAAATAG
1 AAATAAATAAAAAAG
81083565 AATATAAATAA
1 AA-ATAAATAA
81083576 GATAAAGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.30
15 8 0.35
16 8 0.35
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (15 bp):
AAATAAATAAAAAAG
Found at i:81084255 original size:11 final size:11
Alignment explanation
Indices: 81084239--81084263 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81084229 GCGATTATTG
81084239 TATTTATTGTA
1 TATTTATTGTA
81084250 TATTTATTGTA
1 TATTTATTGTA
81084261 TAT
1 TAT
81084264 AAATATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TATTTATTGTA
Found at i:81084886 original size:21 final size:21
Alignment explanation
Indices: 81084847--81084886 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
81084837 TTTATTTAAA
*
81084847 AATATAAATGATATAGAATAT
1 AATATAAATGAAATAGAATAT
*
81084868 AATATAAATGAAATGGAAT
1 AATATAAATGAAATAGAAT
81084887 TACTGATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (21 bp):
AATATAAATGAAATAGAATAT
Found at i:81085030 original size:14 final size:14
Alignment explanation
Indices: 81085011--81085039 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81085001 TAGATAAATA
81085011 ATAATCTATATAAC
1 ATAATCTATATAAC
81085025 ATAATCTATATAAC
1 ATAATCTATATAAC
81085039 A
1 A
81085040 AAGTAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:81086750 original size:19 final size:19
Alignment explanation
Indices: 81086726--81086765 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
81086716 ATTTTTTTTT
* *
81086726 ATTAGAATCGAAAAGTTTA
1 ATTAGAATAGAAAAGTATA
81086745 ATTAGAATAGAAAAGTATA
1 ATTAGAATAGAAAAGTATA
81086764 AT
1 AT
81086766 AAAAGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30
Consensus pattern (19 bp):
ATTAGAATAGAAAAGTATA
Found at i:81088285 original size:16 final size:16
Alignment explanation
Indices: 81088264--81088296 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
81088254 TCTTATTCCT
*
81088264 TTGCTACTATAGAATA
1 TTGCTACTATAAAATA
81088280 TTGCTACTATAAAATA
1 TTGCTACTATAAAATA
81088296 T
1 T
81088297 AGAATACCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (16 bp):
TTGCTACTATAAAATA
Found at i:81094000 original size:14 final size:14
Alignment explanation
Indices: 81093981--81094009 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81093971 ACAGATGGAT
81093981 TCGTATAATTCTTA
1 TCGTATAATTCTTA
81093995 TCGTATAATTCTTA
1 TCGTATAATTCTTA
81094009 T
1 T
81094010 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:81098242 original size:20 final size:21
Alignment explanation
Indices: 81098176--81098244 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
81098166 TCACTTCGTT
81098176 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
81098197 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
81098218 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
81098239 -CTTTTT
1 TCTTTTT
81098245 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:81100643 original size:18 final size:18
Alignment explanation
Indices: 81100610--81100703 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
81100600 AAGGTTTTCT
81100610 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
81100625 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
*
81100643 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
* *
81100661 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
*
81100679 TATTGATGATAGTGACGC
1 TATTGATGATAGTGACGA
81100697 TATTGAT
1 TATTGAT
81100704 CGTGACCTTG
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:81108970 original size:14 final size:14
Alignment explanation
Indices: 81108951--81108978 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81108941 TATATTAGTA
81108951 TTTTCTATTCTATT
1 TTTTCTATTCTATT
81108965 TTTTCTATTCTATT
1 TTTTCTATTCTATT
81108979 AGTATTAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTCTATTCTATT
Found at i:81108986 original size:6 final size:6
Alignment explanation
Indices: 81108975--81109053 Score: 66
Period size: 5 Copynumber: 14.2 Consensus size: 6
81108965 TTTTCTATTC
* *
81108975 TATTAG TATTAGAG TATTAG -ATTAG TATT-C TATT-C TATTAG TATTAG
1 TATTAG TATT--AG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
81109022 -ATTAG TATTAG --TTAG -ATTAG -ATTAG TATTAG T
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG T
81109054 TAGTGATCCC
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
4 4 0.06
5 28 0.44
6 26 0.41
8 6 0.09
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (6 bp):
TATTAG
Found at i:81109001 original size:11 final size:11
Alignment explanation
Indices: 81108976--81109057 Score: 50
Period size: 11 Copynumber: 7.5 Consensus size: 11
81108966 TTTCTATTCT
81108976 ATTAGTATTAG
1 ATTAGTATTAG
81108987 ---AGTATTAG
1 ATTAGTATTAG
**
81108995 ATTAGTATTCT
1 ATTAGTATTAG
*
81109006 ATT-CTATTAG
1 ATTAGTATTAG
81109016 TATTAG-ATTAG
1 -ATTAGTATTAG
81109027 TATTAGTTAGATTAG
1 -ATTAG-T--ATTAG
81109042 ATTAGTATTAG
1 ATTAGTATTAG
81109053 -TTAGT
1 ATTAGT
81109058 GATCCCGGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 19
0.69 0.07 0.23
Matches are distributed among these distances:
8 8 0.14
10 9 0.16
11 28 0.50
13 1 0.02
14 5 0.09
15 5 0.09
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:81109042 original size:20 final size:21
Alignment explanation
Indices: 81109012--81109057 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
81109002 TTCTATTCTA
81109012 TTAGTATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
81109033 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAG
81109053 TTAGT
1 TTAGT
81109058 GATCCCGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAG
Found at i:81119298 original size:29 final size:27
Alignment explanation
Indices: 81119246--81119305 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 27
81119236 AAGTTAAAAT
81119246 TTTTTAAGAGGTAAAAATTAAATTATAAA
1 TTTTTAAGAGGTAAAAATTAAATT-T-AA
* *
81119275 TTTTTATA-AGGTAAAAGTTTAATTTAA
1 TTTTTA-AGAGGTAAAAATTAAATTTAA
81119302 TTTT
1 TTTT
81119306 ATATTAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 6 0.21
28 1 0.04
29 20 0.71
30 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (27 bp):
TTTTTAAGAGGTAAAAATTAAATTTAA
Found at i:81119314 original size:16 final size:15
Alignment explanation
Indices: 81119293--81119333 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
81119283 AGGTAAAAGT
81119293 TTAATTTAATTTTATA
1 TTAATTTAATTTT-TA
81119309 TTAATTTATATTTTTA
1 TTAATTTA-ATTTTTA
*
81119325 TTATTTTAA
1 TTAATTTAA
81119334 AGTAATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 1 0.04
16 17 0.74
17 5 0.22
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTAATTTAATTTTTA
Found at i:81123924 original size:20 final size:20
Alignment explanation
Indices: 81123901--81123942 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
81123891 TTCTTTTGAA
81123901 AAATGATTAT-TTTATAAAAT
1 AAATGATTATGTTTA-AAAAT
* *
81123921 AAATTATTTTGTTTAAAAAT
1 AAATGATTATGTTTAAAAAT
81123941 AA
1 AA
81123943 TTGAATATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
AAATGATTATGTTTAAAAAT
Found at i:81129586 original size:33 final size:33
Alignment explanation
Indices: 81129535--81129614 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
81129525 TCCCATTGTG
* *
81129535 CCGGAACCGACACCATCTGCCGAGGTGCCTGATT
1 CCGGCACC-ACACCATCTGCAGAGGTGCCTGATT
81129569 CCGGCACCACACCATCTGCAGAGGTGCCTGATT
1 CCGGCACCACACCATCTGCAGAGGTGCCTGATT
81129602 CCGGCACCACACC
1 CCGGCACCACACC
81129615 GGCTCTAACT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
33 37 0.84
34 7 0.16
ACGTcount: A:0.21, C:0.40, G:0.24, T:0.15
Consensus pattern (33 bp):
CCGGCACCACACCATCTGCAGAGGTGCCTGATT
Found at i:81130198 original size:62 final size:64
Alignment explanation
Indices: 81130101--81130227 Score: 177
Period size: 62 Copynumber: 2.0 Consensus size: 64
81130091 TGTTTTTTTA
* * * * * *
81130101 TGATAGTATCTGAAAATATTGTAGGGTTAAGTTTGTTG-GC-TTTTTTAGAATTAGGATTAAAT
1 TGATAGAATCTGAAAATATTGTAAGGTTAAATTTGTTGAACTTTTTTTAGAATTAAGACTAAAT
*
81130163 TGATAGAATCTGTAAATATTGTAAGGTTAAATTTGTTGAACTTTTTTTAGAATTAAGACTAAAT
1 TGATAGAATCTGAAAATATTGTAAGGTTAAATTTGTTGAACTTTTTTTAGAATTAAGACTAAAT
81130227 T
1 T
81130228 TATAAAATTT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
62 34 0.61
63 1 0.02
64 21 0.38
ACGTcount: A:0.34, C:0.04, G:0.19, T:0.43
Consensus pattern (64 bp):
TGATAGAATCTGAAAATATTGTAAGGTTAAATTTGTTGAACTTTTTTTAGAATTAAGACTAAAT
Found at i:81130247 original size:64 final size:62
Alignment explanation
Indices: 81130114--81130249 Score: 164
Period size: 64 Copynumber: 2.2 Consensus size: 62
81130104 TAGTATCTGA
* * * * * * *
81130114 AAATATTGTAGGGTTAAGTTTGTTGGCTTTTTTAGAATTAGGATTAAATTGATAGAATCTGT
1 AAATATTGTAAGGTTAAATTTGTTGACTTTTTTAGAATTAAGACTAAATTGATAAAATCTAT
* *
81130176 AAATATTGTAAGGTTAAATTTGTTGAACTTTTTTTAGAATTAAGACTAAATTTATAAAATTTAT
1 AAATATTGTAAGGTTAAATTTGTTG-AC-TTTTTTAGAATTAAGACTAAATTGATAAAATCTAT
*
81130240 AATTATTGTA
1 AAATATTGTA
81130250 GAACTAAATT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
62 23 0.37
63 1 0.02
64 38 0.61
ACGTcount: A:0.36, C:0.03, G:0.16, T:0.45
Consensus pattern (62 bp):
AAATATTGTAAGGTTAAATTTGTTGACTTTTTTAGAATTAAGACTAAATTGATAAAATCTAT
Found at i:81130258 original size:64 final size:64
Alignment explanation
Indices: 81130141--81130263 Score: 149
Period size: 64 Copynumber: 1.9 Consensus size: 64
81130131 GTTTGTTGGC
* * * * **
81130141 TTTTTTAGAATTAGGATTAAATTGATAGAATCTGTAAATATTGTAAGGTTAAATTTGTTGAACT
1 TTTTTTAGAATTAAGACTAAATTGATAAAATCTATAAATATTGTAAGACTAAATTTGTTGAACT
* * *
81130205 TTTTTTAGAATTAAGACTAAATTTATAAAATTTATAATTATTGT-AGAACTAAATTTGTT
1 TTTTTTAGAATTAAGACTAAATTGATAAAATCTATAAATATTGTAAG-ACTAAATTTGTT
81130264 ATTATGTAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
63 2 0.04
64 47 0.96
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.46
Consensus pattern (64 bp):
TTTTTTAGAATTAAGACTAAATTGATAAAATCTATAAATATTGTAAGACTAAATTTGTTGAACT
Found at i:81136459 original size:3 final size:3
Alignment explanation
Indices: 81136451--81136487 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
81136441 TTCAAAGCAA
81136451 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
81136488 TACTTGAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:81136574 original size:19 final size:20
Alignment explanation
Indices: 81136548--81136596 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
81136538 TTTTAGAAAA
*
81136548 TTTT-TAAAATTTTA-ACTT
1 TTTTATAAAATTTTATAATT
81136566 TTTTATAAAAATTTTATAATT
1 TTTTAT-AAAATTTTATAATT
81136587 TTTTA-AAAAT
1 TTTTATAAAAT
81136597 ATAAAATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 4 0.15
19 6 0.22
20 9 0.33
21 8 0.30
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTATAAAATTTTATAATT
Found at i:81136578 original size:20 final size:20
Alignment explanation
Indices: 81136553--81136595 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
81136543 GAAAATTTTT
*
81136553 AAAATTTTA-ACTTTTTTATA
1 AAAATTTTATAATTTTTTA-A
81136573 AAAATTTTATAATTTTTTAA
1 AAAATTTTATAATTTTTTAA
81136593 AAA
1 AAA
81136596 TATAAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
AAAATTTTATAATTTTTTAA
Found at i:81136617 original size:18 final size:19
Alignment explanation
Indices: 81136596--81136633 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
81136586 TTTTTAAAAA
81136596 TATAAA-ATTTGAATTATT
1 TATAAATATTTGAATTATT
81136614 TATAAATATTTGAATTATT
1 TATAAATATTTGAATTATT
81136633 T
1 T
81136634 TGTAGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
TATAAATATTTGAATTATT
Found at i:81142226 original size:18 final size:18
Alignment explanation
Indices: 81142205--81142239 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
81142195 TAAAAATATA
81142205 TTTTAT-ATTAATATTTAT
1 TTTTATAATTAA-ATTTAT
81142223 TTTTATAATTAAATTTA
1 TTTTATAATTAAATTTA
81142240 AACGAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTATAATTAAATTTAT
Found at i:81143992 original size:31 final size:30
Alignment explanation
Indices: 81143944--81144010 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
81143934 GATATTTAAT
*
81143944 AATAAATTTAAAATATAATATATAATA-AAA
1 AATATATTTAAAATATAATA-ATAATATAAA
* *
81143974 AATATATTTATAAGTATAATAATTATATAAA
1 AATATATTTA-AAATATAATAATAATATAAA
81144005 AATATA
1 AATATA
81144011 AAATATATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 14 0.44
31 18 0.56
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (30 bp):
AATATATTTAAAATATAATAATAATATAAA
Found at i:81144535 original size:17 final size:17
Alignment explanation
Indices: 81144482--81144579 Score: 88
Period size: 17 Copynumber: 5.5 Consensus size: 17
81144472 AATTATATCT
81144482 TCTAAGATTGTATATCATA
1 TCTAAGATTG--TATCATA
* **
81144501 TCTAATATTACAATCATA
1 TCTAAGATT-GTATCATA
81144519 TCTAAGATTGTATCATA
1 TCTAAGATTGTATCATA
* * *
81144536 TCTAAAATTGCAATTATA
1 TCTAAGATTG-TATCATA
* *
81144554 TTTAATATTGTATCATA
1 TCTAAGATTGTATCATA
81144571 TCTAAGATT
1 TCTAAGATT
81144580 ACATATCATT
Statistics
Matches: 62, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
17 27 0.44
18 27 0.44
19 8 0.13
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (17 bp):
TCTAAGATTGTATCATA
Found at i:81144540 original size:35 final size:35
Alignment explanation
Indices: 81144482--81144588 Score: 133
Period size: 35 Copynumber: 3.0 Consensus size: 35
81144472 AATTATATCT
*
81144482 TCTAAGATTGTATATCATATCTAATATTACAATCATA
1 TCTAAGATTG--TATCATATCTAAAATTACAATCATA
* *
81144519 TCTAAGATTGTATCATATCTAAAATTGCAATTATA
1 TCTAAGATTGTATCATATCTAAAATTACAATCATA
* * *
81144554 TTTAATATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAAATTACA-ATCAT
81144589 TTGAGTCAAG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
35 47 0.77
36 4 0.07
37 10 0.16
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.42
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAAATTACAATCATA
Found at i:81145294 original size:9 final size:9
Alignment explanation
Indices: 81145280--81145313 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
81145270 TCTCCTTTCA
81145280 TCTTCTTGT
1 TCTTCTTGT
81145289 TCTTCTTGT
1 TCTTCTTGT
81145298 TCTTCTTGT
1 TCTTCTTGT
81145307 TCTTCTT
1 TCTTCTT
81145314 CCTCTCGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.09, T:0.68
Consensus pattern (9 bp):
TCTTCTTGT
Found at i:81150911 original size:6 final size:6
Alignment explanation
Indices: 81150867--81150907 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
81150857 TCCTTTCCTC
*
81150867 TTCTTG TTCTTG TTCTTG TTCTTG TTCTTG TTCTTC TTCTT
1 TTCTTG TTCTTG TTCTTG TTCTTG TTCTTG TTCTTG TTCTT
81150908 CTTCATATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.20, G:0.12, T:0.68
Consensus pattern (6 bp):
TTCTTG
Found at i:81157520 original size:31 final size:29
Alignment explanation
Indices: 81157451--81157524 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
81157441 ACAAGATAAT
**
81157451 AACAAAAGTGACTAAAACGTAACATTTCA
1 AACAAAAGTGACTAAAACGTAACATGGCA
* * *
81157480 AACATAAGTGACTAAAATGTAACCTGAGGCA
1 AACAAAAGTGACTAAAACGTAACAT--GGCA
81157511 AACAAAAGTGACTA
1 AACAAAAGTGACTA
81157525 TTTTTGTAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 22 0.59
31 15 0.41
ACGTcount: A:0.50, C:0.16, G:0.15, T:0.19
Consensus pattern (29 bp):
AACAAAAGTGACTAAAACGTAACATGGCA
Found at i:81157647 original size:27 final size:27
Alignment explanation
Indices: 81157609--81157663 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
81157599 CAAAGTAACG
81157609 TATATTTATTTGGTATTTAAAATATTT
1 TATATTTATTTGGTATTTAAAATATTT
81157636 TATATTTATTTGGTATTTAAAATATTT
1 TATATTTATTTGGTATTTAAAATATTT
81157663 T
1 T
81157664 TTAACTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (27 bp):
TATATTTATTTGGTATTTAAAATATTT
Found at i:81157681 original size:28 final size:27
Alignment explanation
Indices: 81157622--81157684 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
81157612 ATTTATTTGG
* * **
81157622 TATTTAAAATATTTTATATTTATTTGG
1 TATTTAAAATATTTTATACTTAATTAA
*
81157649 TATTTAAAATATTTTTTAACTTAATTAA
1 TATTTAAAATATTTTAT-ACTTAATTAA
81157677 TATTTAAA
1 TATTTAAA
81157685 CTTGTAAATC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 16 0.53
28 14 0.47
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.56
Consensus pattern (27 bp):
TATTTAAAATATTTTATACTTAATTAA
Found at i:81158316 original size:16 final size:15
Alignment explanation
Indices: 81158298--81158327 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81158288 AAAATGATTT
81158298 TTTTTAAAAATTTAA
1 TTTTTAAAAATTTAA
*
81158313 TTTTTGAAAATTTAA
1 TTTTTAAAAATTTAA
81158328 AGTTAAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
TTTTTAAAAATTTAA
Found at i:81160008 original size:3 final size:3
Alignment explanation
Indices: 81160002--81160051 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
81159992 GTACGTTATT
*
81160002 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
81160050 AT
1 AT
81160052 TCTGTTAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:81165332 original size:18 final size:18
Alignment explanation
Indices: 81165309--81165360 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
81165299 ACCCCATCTG
* *
81165309 GAGTAATCACTAGGTCTA
1 GAGTAATCACTAGGCCGA
* *
81165327 GAGTAATCGCTAGGCCGG
1 GAGTAATCACTAGGCCGA
*
81165345 GAGTAATCACTGGGCC
1 GAGTAATCACTAGGCC
81165361 TATTACCCCA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (18 bp):
GAGTAATCACTAGGCCGA
Found at i:81173121 original size:21 final size:21
Alignment explanation
Indices: 81173098--81173138 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
81173088 GAAATATATA
81173098 TTTATATAATTAAAATTTTAAT
1 TTTATA-AATTAAAATTTTAAT
* *
81173120 TTTCTAAATTAAATTTTTA
1 TTTATAAATTAAAATTTTA
81173139 TGAATTTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTATAAATTAAAATTTTAAT
Found at i:81173680 original size:2 final size:2
Alignment explanation
Indices: 81173673--81173713 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
81173663 ACTAGTCCTT
81173673 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81173714 TAATTACTAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:81180479 original size:21 final size:21
Alignment explanation
Indices: 81180435--81180481 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
81180425 GGTTACCGTT
*** *
81180435 CGAGAATCATGGACTGTGATG
1 CGAGAATCATGGACCACGAGG
81180456 CGAGAATCATGGACCACGAGG
1 CGAGAATCATGGACCACGAGG
81180477 CGAGA
1 CGAGA
81180482 CTAAACATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.19, G:0.34, T:0.15
Consensus pattern (21 bp):
CGAGAATCATGGACCACGAGG
Found at i:81188667 original size:19 final size:19
Alignment explanation
Indices: 81188643--81188702 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 19
81188633 CCGGTTTAAA
81188643 TTATTGTATAAATTAATAT
1 TTATTGTATAAATTAATAT
* * *
81188662 TTATTGAAT-AGTTAAAAT
1 TTATTGTATAAATTAATAT
* *
81188680 TTTTTGTATAAAATAAATAT
1 TTATTGTAT-AAATTAATAT
81188700 TTA
1 TTA
81188703 GACTTTTTTT
Statistics
Matches: 30, Mismatches: 9, Indels: 3
0.71 0.21 0.07
Matches are distributed among these distances:
18 14 0.47
19 8 0.27
20 8 0.27
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (19 bp):
TTATTGTATAAATTAATAT
Found at i:81194232 original size:17 final size:17
Alignment explanation
Indices: 81194207--81194247 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
81194197 ATAAAGGAAA
*
81194207 CCAACACAATCCAAAAT
1 CCAAAACAATCCAAAAT
81194224 CCAAAACAATCCAAAAT
1 CCAAAACAATCCAAAAT
81194241 CCAAAAC
1 CCAAAAC
81194248 GCAATTAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.56, C:0.34, G:0.00, T:0.10
Consensus pattern (17 bp):
CCAAAACAATCCAAAAT
Found at i:81196395 original size:5 final size:5
Alignment explanation
Indices: 81196385--81196420 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
81196375 AAAACATGGC
* *
81196385 CTAAA CTAAA CTAAA CTAAA CTAAT CTAAA CAAAA C
1 CTAAA CTAAA CTAAA CTAAA CTAAA CTAAA CTAAA C
81196421 AATCTAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.58, C:0.22, G:0.00, T:0.19
Consensus pattern (5 bp):
CTAAA
Found at i:81196426 original size:14 final size:15
Alignment explanation
Indices: 81196387--81196427 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
81196377 AACATGGCCT
* *
81196387 AAACTAAACTAAACT
1 AAACTAATCTAAACA
81196402 AAACTAATCTAAACA
1 AAACTAATCTAAACA
81196417 AAAC-AATCTAA
1 AAACTAATCTAA
81196428 TTTAGATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.61, C:0.20, G:0.00, T:0.20
Consensus pattern (15 bp):
AAACTAATCTAAACA
Found at i:81197960 original size:16 final size:18
Alignment explanation
Indices: 81197939--81197971 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81197929 ATGATAATAA
81197939 AATTTT-AC-TATTTTTT
1 AATTTTCACATATTTTTT
81197955 AATTTTCACATATTTTT
1 AATTTTCACATATTTTT
81197972 ATTTTTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (18 bp):
AATTTTCACATATTTTTT
Found at i:81211338 original size:55 final size:55
Alignment explanation
Indices: 81211254--81211364 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
81211244 CCCTAAATAG
81211254 AACCATATCGAACCTCTAGTGGCCATCCGATTAGGTGTTCTATTTCTCATTTCTT
1 AACCATATCGAACCTCTAGTGGCCATCCGATTAGGTGTTCTATTTCTCATTTCTT
*
81211309 AACCATATCGAACCTCTAGTGGTCATCCGATTAGGTGTTCTATTTCTCATTTCTT
1 AACCATATCGAACCTCTAGTGGCCATCCGATTAGGTGTTCTATTTCTCATTTCTT
81211364 A
1 A
81211365 CTTTGAATTC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (55 bp):
AACCATATCGAACCTCTAGTGGCCATCCGATTAGGTGTTCTATTTCTCATTTCTT
Found at i:81220166 original size:32 final size:32
Alignment explanation
Indices: 81220130--81220197 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
81220120 TACTCGTGTA
81220130 AAATGATTTCTTATGTAACTTTATATTAATTG
1 AAATGATTTCTTATGTAACTTTATATTAATTG
81220162 AAATGATTTCTTATGTAACTTTATATTAATTG
1 AAATGATTTCTTATGTAACTTTATATTAATTG
81220194 AAAT
1 AAAT
81220198 ATGTTACTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.49
Consensus pattern (32 bp):
AAATGATTTCTTATGTAACTTTATATTAATTG
Found at i:81220217 original size:32 final size:32
Alignment explanation
Indices: 81220130--81220217 Score: 90
Period size: 32 Copynumber: 2.8 Consensus size: 32
81220120 TACTCGTGTA
** *
81220130 AAATGATTTCTTATGTAACTTTATATTAATTG
1 AAATGATTTCTTATACAAATTTATATTAATTG
** *
81220162 AAATGATTTCTTATGTAACTTTATATTAATTG
1 AAATGATTTCTTATACAAATTTATATTAATTG
81220194 AAAT-ATGTTACTTA-ACAAATTTAT
1 AAATGAT-TT-CTTATACAAATTTAT
81220218 CACTAATTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
31 2 0.04
32 45 0.88
33 4 0.08
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.48
Consensus pattern (32 bp):
AAATGATTTCTTATACAAATTTATATTAATTG
Found at i:81223718 original size:28 final size:27
Alignment explanation
Indices: 81223678--81223811 Score: 103
Period size: 28 Copynumber: 4.8 Consensus size: 27
81223668 CTGCACAATC
*
81223678 GATGTCTT-GCACACTAAGTGCTATACCA
1 GATGT-TTCGCACACTAAGTGCCAT-CCA
*
81223706 GATGTTTCGCACACTAAGTGCCATCCTT
1 GATGTTTCGCACACTAAGTGCCATCC-A
* ** * *
81223734 TATACTTCGCACACTAAGTGCCATTTCG
1 GATGTTTCGCACACTAAGTGCCA-TCCA
81223762 GATGTCTT-GCACACTAAGTGCCATCCTCA
1 GATGT-TTCGCACACTAAGTGCCAT-C-CA
**
81223791 -ATACTTCGCACACTAAGTGCC
1 GATGTTTCGCACACTAAGTGCC
81223812 GTTCGTTTGG
Statistics
Matches: 85, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
27 7 0.08
28 73 0.86
29 5 0.06
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (27 bp):
GATGTTTCGCACACTAAGTGCCATCCA
Found at i:81223774 original size:56 final size:56
Alignment explanation
Indices: 81223686--81223811 Score: 182
Period size: 56 Copynumber: 2.2 Consensus size: 56
81223676 TCGATGTCTT
* **
81223686 GCACACTAAGTGCTATACCAGATGTTTCGCACACTAAGTGCCATCCTTTATACTTC
1 GCACACTAAGTGCCATACCAGATGTTTCGCACACTAAGTGCCATCCTCAATACTTC
** *
81223742 GCACACTAAGTGCCATTTCGGATGTCTT-GCACACTAAGTGCCATCCTCAATACTTC
1 GCACACTAAGTGCCATACCAGATGT-TTCGCACACTAAGTGCCATCCTCAATACTTC
81223798 GCACACTAAGTGCC
1 GCACACTAAGTGCC
81223812 GTTCGTTTGG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
56 61 0.97
57 2 0.03
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (56 bp):
GCACACTAAGTGCCATACCAGATGTTTCGCACACTAAGTGCCATCCTCAATACTTC
Found at i:81224253 original size:68 final size:63
Alignment explanation
Indices: 81224106--81224253 Score: 165
Period size: 63 Copynumber: 2.3 Consensus size: 63
81224096 ATATAGTTCG
** * *
81224106 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCGATGTGACCTAGCCAGTTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACAAATAGTACCACCCATGCGACCTAGCCAGTTTATCTCGTA
* *
81224169 GCTCTCTTGT-CTACATGGTGTACAAATAGTATCACCCATGCGACCTAGCTACA-TTATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACAAATAGTACCACCCATGCGACCTAGC--CAGTT-T-A--TC
81224232 TCGTA
59 TCGTA
81224237 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
81224254 ATGTGCACTC
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
62 1 0.01
63 41 0.58
64 2 0.03
65 3 0.04
66 1 0.01
68 22 0.31
69 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACAAATAGTACCACCCATGCGACCTAGCCAGTTTATCTCGTA
Found at i:81225908 original size:68 final size:67
Alignment explanation
Indices: 81225743--81225917 Score: 173
Period size: 68 Copynumber: 2.6 Consensus size: 67
81225733 TAGTACCACT
* * * *
81225743 CATGCGACCTAGC--CA-ATGTGTCTCGTAGCTCTCTTGTCTACATGGTGTCTTCACTTGGAATC
1 CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTCATCAC-TCGAATC
81225805 ACA
65 ACA
* * *
81225808 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGCGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGTG-T-CATCACTCGA
81225870 ATCACA
62 ATCACA
*
81225876 CATGTGACCTAGCTACTATATAGTATCTCGTAGCTCTCTTGT
1 CATGCGACCTAGCTAC-ATATA-TATCTCGTAGCTCTCTTGT
81225918 ACACATGATG
Statistics
Matches: 92, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
65 13 0.14
67 2 0.02
68 41 0.45
69 5 0.05
70 28 0.30
71 3 0.03
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (67 bp):
CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTCATCACTCGAATCA
CA
Found at i:81238014 original size:37 final size:37
Alignment explanation
Indices: 81237972--81238045 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
81237962 AAACTTGTAT
81237972 GTATTCAAGTTCAATCTCAAATTCGACTTGATAATTA
1 GTATTCAAGTTCAATCTCAAATTCGACTTGATAATTA
81238009 GTATTCAAGTTCAATCTCAAATTCGACTTGATAATTA
1 GTATTCAAGTTCAATCTCAAATTCGACTTGATAATTA
81238046 AACTTAAGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (37 bp):
GTATTCAAGTTCAATCTCAAATTCGACTTGATAATTA
Found at i:81242144 original size:17 final size:18
Alignment explanation
Indices: 81242114--81242154 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
81242104 TATATTTGTT
81242114 TTTTAATTAAAAA-TAA-A
1 TTTT-ATTAAAAATTAATA
81242131 TTTTATTAATAAATTAATA
1 TTTTATTAA-AAATTAATA
81242150 TTTTA
1 TTTTA
81242155 ATCACTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 5 0.24
17 7 0.33
18 3 0.14
19 6 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTATTAAAAATTAATA
Found at i:81243759 original size:23 final size:23
Alignment explanation
Indices: 81243728--81243780 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
81243718 TGTGACACTT
*
81243728 TAATATTATACTATCTTATTACC
1 TAATTTTATACTATCTTATTACC
81243751 TAATTTTATACTATCTTATTACC
1 TAATTTTATACTATCTTATTACC
81243774 TAATTTT
1 TAATTTT
81243781 TTAATTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (23 bp):
TAATTTTATACTATCTTATTACC
Found at i:81245909 original size:18 final size:19
Alignment explanation
Indices: 81245876--81245911 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
81245866 ATGTTAAGTC
*
81245876 CTAAACAAAAGCAAAGAAT
1 CTAAACAAAAGAAAAGAAT
81245895 CTAAA-AAAAGAAAAGAA
1 CTAAACAAAAGAAAAGAA
81245912 AGCTGATGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.69, C:0.11, G:0.11, T:0.08
Consensus pattern (19 bp):
CTAAACAAAAGAAAAGAAT
Found at i:81251483 original size:21 final size:22
Alignment explanation
Indices: 81251459--81251504 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
81251449 AATTAGATAG
81251459 ATAAATAAT-AA-AAATTCTTAC
1 ATAAATAATAAATAAATT-TTAC
*
81251480 ATAAATGATAAATAAATTTTAC
1 ATAAATAATAAATAAATTTTAC
81251502 ATA
1 ATA
81251505 TATTTCTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 9 0.41
23 5 0.23
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.35
Consensus pattern (22 bp):
ATAAATAATAAATAAATTTTAC
Found at i:81256259 original size:17 final size:17
Alignment explanation
Indices: 81256239--81256274 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
81256229 AACCTAACCC
*
81256239 AAAAAAAA-ACAAAGAA
1 AAAAAAAAGAAAAAGAA
81256255 AAAAAAAAGAAAAAGAA
1 AAAAAAAAGAAAAAGAA
81256272 AAA
1 AAA
81256275 CCTACCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAGAA
Found at i:81256273 original size:11 final size:11
Alignment explanation
Indices: 81256241--81256274 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
81256231 CCTAACCCAA
81256241 AAAAAAACAAAG
1 AAAAAAA-AAAG
81256253 AAAAAAAAAAG
1 AAAAAAAAAAG
81256264 AAAAAGAAAAA
1 AAAAA-AAAAA
81256275 CCTACCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:81256286 original size:13 final size:15
Alignment explanation
Indices: 81256270--81256302 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
81256260 AAAGAAAAAG
81256270 AAAAACCT-A-CCAA
1 AAAAACCTAACCCAA
81256283 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
81256298 AAAAA
1 AAAAA
81256303 AAAGAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 1 0.06
15 9 0.50
ACGTcount: A:0.67, C:0.27, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:81256312 original size:28 final size:28
Alignment explanation
Indices: 81256281--81256347 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
81256271 AAAACCTACC
81256281 AAAAAAACCTAACCCAAAAAAAAAAGAA
1 AAAAAAACCTAACCCAAAAAAAAAAGAA
** * * *
81256309 AAAAAAGA-AAAACCTAACAAAAAAAGAT
1 AAAAAA-ACCTAACCCAAAAAAAAAAGAA
81256337 AAAAAAACCTA
1 AAAAAAACCTA
81256348 GCCACCTAAC
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
27 1 0.03
28 28 0.93
29 1 0.03
ACGTcount: A:0.75, C:0.15, G:0.04, T:0.06
Consensus pattern (28 bp):
AAAAAAACCTAACCCAAAAAAAAAAGAA
Found at i:81258898 original size:12 final size:12
Alignment explanation
Indices: 81258878--81258913 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
81258868 ATTCATTTAA
81258878 CATTCATGCATT
1 CATTCATGCATT
*
81258890 CATTTATGCATT
1 CATTCATGCATT
*
81258902 CATTCATTCATT
1 CATTCATGCATT
81258914 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:81266477 original size:35 final size:35
Alignment explanation
Indices: 81266450--81266615 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
81266440 CATGGCAAAG
*
81266450 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
81266485 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
81266520 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
81266560 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
81266595 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
81266616 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:81266569 original size:75 final size:75
Alignment explanation
Indices: 81266450--81266620 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
81266440 CATGGCAAAG
** *
81266450 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
81266509 CCATACTGAGC
65 CCATACCGAGC
81266520 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
81266585 CATACCGAGT
66 CATACCGAGC
**
81266595 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
81266621 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:81273936 original size:35 final size:34
Alignment explanation
Indices: 81273909--81273998 Score: 162
Period size: 34 Copynumber: 2.6 Consensus size: 34
81273899 CATGGCAAAG
*
81273909 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTAT-ATCCATACTGAGC
81273944 TGTGAAATGTAGGTATGGTATATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATATCCATACTGAGC
81273978 TGTGAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
81273999 TATCAAATCC
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
34 33 0.61
35 21 0.39
ACGTcount: A:0.29, C:0.09, G:0.28, T:0.34
Consensus pattern (34 bp):
TGTGAAATGTAGGTATGGTATATCCATACTGAGC
Found at i:81274009 original size:40 final size:35
Alignment explanation
Indices: 81273909--81274069 Score: 182
Period size: 35 Copynumber: 4.5 Consensus size: 35
81273899 CATGGCAAAG
81273909 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
*
81273944 TGTGAAATGTAGGTATGGTAT-ATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
81273978 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** * * *
81274018 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGT
**
81274053 TGAAAAATGTAGGTATG
1 TGTGAAATGTAGGTATG
81274070 TATTTCAATG
Statistics
Matches: 110, Mismatches: 9, Indels: 14
0.83 0.07 0.11
Matches are distributed among these distances:
34 31 0.28
35 46 0.42
37 5 0.05
40 28 0.25
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:81274031 original size:74 final size:75
Alignment explanation
Indices: 81273909--81274077 Score: 210
Period size: 74 Copynumber: 2.4 Consensus size: 75
81273899 CATGGCAAAG
** *
81273909 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATAT-C
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATATCC
*
81273968 CATACTGAGC
66 CATACCGAGC
*
81273978 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATATCC
*
81274043 CATACCGAGT
66 CATACCGAGC
**
81274053 TGAAAAATGTAGGTAT-GTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
81274078 TGAGGAAAAC
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
69 18 0.21
72 4 0.05
73 4 0.05
74 37 0.43
75 23 0.27
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATATCC
CATACCGAGC
Found at i:81278838 original size:24 final size:24
Alignment explanation
Indices: 81278806--81278851 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
81278796 CCCTGGACAT
81278806 ATAGAAATTATTTTAAAATGCTCG
1 ATAGAAATTATTTTAAAATGCTCG
81278830 ATAGAAATTATTTTAAAATGCT
1 ATAGAAATTATTTTAAAATGCT
81278852 GGCGACTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (24 bp):
ATAGAAATTATTTTAAAATGCTCG
Found at i:81279692 original size:24 final size:24
Alignment explanation
Indices: 81279634--81279680 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
81279624 AATTTTCAAT
*
81279634 TTGAGTTTTAAATATTAATGGGTA
1 TTGAATTTTAAATATTAATGGGTA
*
81279658 TTGAATTTTAAATTTTAATGGGT
1 TTGAATTTTAAATATTAATGGGT
81279681 TTGGACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (24 bp):
TTGAATTTTAAATATTAATGGGTA
Found at i:81283506 original size:47 final size:47
Alignment explanation
Indices: 81283397--81283507 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 47
81283387 CCGGGATAAG
* * *
81283397 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * * *
81283444 CACAAAGTACTTCATCGGAACAAATCTGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
81283491 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
81283508 ACTCAATGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 1 0.02
47 50 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:81284911 original size:31 final size:31
Alignment explanation
Indices: 81284876--81284939 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
81284866 ATGTATAAAA
81284876 TTACACATTAGGTCAAAGTTCATGCATGATT
1 TTACACATTAGGTCAAAGTTCATGCATGATT
81284907 TTACACATTAGGTCAAAGTTCATGCATGATT
1 TTACACATTAGGTCAAAGTTCATGCATGATT
81284938 TT
1 TT
81284940 GAGATTTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.38
Consensus pattern (31 bp):
TTACACATTAGGTCAAAGTTCATGCATGATT
Found at i:81286588 original size:22 final size:22
Alignment explanation
Indices: 81286563--81286604 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
81286553 AATAATAGAC
81286563 ATTTATGTCAAGACTGAAATAT
1 ATTTATGTCAAGACTGAAATAT
* *
81286585 ATTTATGTCAGGATTGAAAT
1 ATTTATGTCAAGACTGAAAT
81286605 TTTAAAATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (22 bp):
ATTTATGTCAAGACTGAAATAT
Found at i:81286860 original size:3 final size:3
Alignment explanation
Indices: 81286848--81286894 Score: 85
Period size: 3 Copynumber: 15.3 Consensus size: 3
81286838 TAGAATCATG
81286848 ATA ATAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
81286894 A
1 A
81286895 CAACGAAACA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:81295028 original size:17 final size:17
Alignment explanation
Indices: 81295006--81295040 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81294996 TACCAGAAAG
81295006 AACATGGAGAGCAAGAA
1 AACATGGAGAGCAAGAA
81295023 AACATGGAGAGCAAGAA
1 AACATGGAGAGCAAGAA
81295040 A
1 A
81295041 CTAGTGCCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.29, T:0.06
Consensus pattern (17 bp):
AACATGGAGAGCAAGAA
Found at i:81302124 original size:22 final size:22
Alignment explanation
Indices: 81302099--81302141 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
81302089 GTTAAAATAT
*
81302099 AATTTTATAT-TTATTAATTTTA
1 AATTTTAAATATT-TTAATTTTA
81302121 AATTTTAAATATTTTAATTTT
1 AATTTTAAATATTTTAATTTT
81302142 TTTTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
AATTTTAAATATTTTAATTTTA
Found at i:81312900 original size:69 final size:69
Alignment explanation
Indices: 81312821--81312954 Score: 180
Period size: 69 Copynumber: 1.9 Consensus size: 69
81312811 GGGTGAAGAG
* * *
81312821 GATGGAGGAGGTGGGGACTTGTAATAGTAGGGTGGTGGTGGAGAGTGGA-CTGGTGGTGGTGGAG
1 GATGGAGGAGGTGGAGACTTGTAATAGTAGGGTGGTGGTGGAGA-TGGAGATGGAGGTGGTGGAG
81312885 AAGGT
65 AAGGT
* * * * *
81312890 GATGGGGGAGGTGGAGATTTGTAGTAGTATGGTGGTGGTGGTGATGGAGATGGAGGTGGTGGAGA
1 GATGGAGGAGGTGGAGACTTGTAATAGTAGGGTGGTGGTGGAGATGGAGATGGAGGTGGTGGAGA
81312955 TTTGTAGTAG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
68 4 0.07
69 52 0.93
ACGTcount: A:0.20, C:0.01, G:0.54, T:0.25
Consensus pattern (69 bp):
GATGGAGGAGGTGGAGACTTGTAATAGTAGGGTGGTGGTGGAGATGGAGATGGAGGTGGTGGAGA
AGGT
Found at i:81312923 original size:48 final size:48
Alignment explanation
Indices: 81312871--81313800 Score: 578
Period size: 48 Copynumber: 19.2 Consensus size: 48
81312861 GAGAGTGGAC
* * *
81312871 TGGTGGTGGTGGAGAAGGTGATGGGGGAGGTGGAGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * *
81312919 TGGTGGTGGTGGTGATGGAGATGGAGGTGGTGGAGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * *
81312967 GGGAGGAGGAGGAGATGGTGATGGGGGAGGAGGAGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * *** * * *
81313015 TGGTAGTGGTGGCGATGGACTTGGAGGAGGTGGGGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * *
81313063 TGGTGGCGGTGGTGATGGTGATGGTGGAGGAGGGGAGTTGTAGTGGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * *** * * * *
81313111 AGCTGGTGCTGGA-ACCTTCACTGGAGGTGGTGGTGATTTGTAATAGTA
1 TGGTGGTGGTGGAGATGGTGA-TGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * *
81313159 TGGTGGTGGAGGGGAAT--AGACTGGTGGTGGTGGGGACTTGTAATAGTA
1 TGGTGGTGGTGGAG-ATGGTGA-TGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * *
81313207 TGGTGGTGGGGGAGATGGAGAAGGAGGAGGTGGTGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * *
81313255 TGGTGGTGGAGGAGAAT-G-AATTGGTGGTGGTGGAGATTTGTAATAGTA
1 TGGTGGTGGTGGAG-ATGGTGA-TGGTGGTGGTGGAGATTTGTAGTAGTA
81313303 TGGTGGTGGTGGAGA--GTGGACTGGTGGTGGTGGAGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGT-GA-TGGTGGTGGTGGAGATTTGTAGTAGTA
* *
81313351 TGGTGGTGGTGGAGA--GTGGACTGGTGGTGGTGGGGACTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGT-GA-TGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * * *
81313399 AGGTGGAGGTGGAGATGGCGACGGTGGAGGAGGGGATTTGTAATAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * *
81313447 TGAAGGTGGTGGTAATGGAGATGGAGATGGAGGTGGTGGGGATTTGTAGTAGTA
1 T---GGTGGTGG---TGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * ** * * * * * * *
81313501 AGGAGGAGGAAGAGATGATGATGGTGGAGGAGGGGAGTTGTAATGGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * *
81313549 -GGT--TGGTGCAG-GGGCCTTCACTGGAGGTGGTGGTGATTGGTAGTAGTA
1 TGGTGGTGGTGGAGATGG---TGA-TGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * *
81313597 TGGCGGTGGAGGAGATGGTGAAGGAGGTGGAGGTGATTTGTAGTAGTA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * * *
81313645 TGGTGGAGGTGGTGAAGGAGAAGGTGGTGGTGGAGACTTGTAATAATA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
* * * * * * * *
81313693 TGGTGGAGGTGGTGAAGGAGAAGGTGGTGGTGGAGACTTGTAATAATA
1 TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
*
81313741 TGGTTGG-GGTGGAGA--GTGGACTGGTGGGGGTGGAGATTTGTAGTAGTA
1 TGG-TGGTGGTGGAGATGGT-GA-TGGTGGTGGTGGAGATTTGTAGTAGTA
*
81313789 TGGTGGAGGTGG
1 TGGTGGTGGTGG
81313801 TGGTGACTTG
Statistics
Matches: 697, Mismatches: 156, Indels: 58
0.77 0.17 0.06
Matches are distributed among these distances:
44 1 0.00
45 4 0.01
46 2 0.00
47 16 0.02
48 604 0.87
49 14 0.02
50 2 0.00
51 19 0.03
52 2 0.00
54 33 0.05
ACGTcount: A:0.21, C:0.03, G:0.49, T:0.27
Consensus pattern (48 bp):
TGGTGGTGGTGGAGATGGTGATGGTGGTGGTGGAGATTTGTAGTAGTA
Found at i:81313327 original size:21 final size:21
Alignment explanation
Indices: 81313303--81313383 Score: 92
Period size: 21 Copynumber: 3.6 Consensus size: 21
81313293 TGTAATAGTA
81313303 TGGTGGTGGTGGAGAGTGGAC
1 TGGTGGTGGTGGAGAGTGGAC
81313324 TGGTGGTGGTGGAGATTTGTAGTAGTA-
1 TGGTGGTGGTGGAGA---GT-G--G-AC
81313351 TGGTGGTGGTGGAGAGTGGAC
1 TGGTGGTGGTGGAGAGTGGAC
81313372 TGGTGGTGGTGG
1 TGGTGGTGGTGG
81313384 GGACTTGTAG
Statistics
Matches: 52, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
20 1 0.02
21 28 0.54
23 1 0.02
24 4 0.08
25 1 0.02
27 16 0.31
28 1 0.02
ACGTcount: A:0.14, C:0.02, G:0.54, T:0.30
Consensus pattern (21 bp):
TGGTGGTGGTGGAGAGTGGAC
Found at i:81313836 original size:36 final size:36
Alignment explanation
Indices: 81313796--81313941 Score: 144
Period size: 36 Copynumber: 4.2 Consensus size: 36
81313786 GTATGGTGGA
*
81313796 GGTGGTGGTGACTTGTAAACATAGGTAGGGCTTGGT
1 GGTGGTGGTGACTTGTAAACATAAGTAGGGCTTGGT
* *
81313832 GGTGGTGGTGACTTATAAACATAAGTGGGGCTTGGT
1 GGTGGTGGTGACTTGTAAACATAAGTAGGGCTTGGT
* * * * *
81313868 GGTGGCGGGGAC-T-TATA-AT-AGTATGG--TGGA
1 GGTGGTGGTGACTTGTAAACATAAGTAGGGCTTGGT
* *
81313898 GGAGGTGGTGACTTGTAAACATAAGTA-GGCGATGGT
1 GGTGGTGGTGACTTGTAAACATAAGTAGGGC-TTGGT
81313934 GGTGGTGG
1 GGTGGTGG
81313942 AGAGGTATAA
Statistics
Matches: 88, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
30 12 0.14
31 1 0.01
32 8 0.09
33 6 0.07
34 7 0.08
35 1 0.01
36 53 0.60
ACGTcount: A:0.22, C:0.08, G:0.42, T:0.28
Consensus pattern (36 bp):
GGTGGTGGTGACTTGTAAACATAAGTAGGGCTTGGT
Found at i:81314673 original size:19 final size:18
Alignment explanation
Indices: 81314634--81314669 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
81314624 TAACCTTATT
81314634 TTTTTTTCTTTAAATTTA
1 TTTTTTTCTTTAAATTTA
*
81314652 TTTTTTTCTTTTAATTTA
1 TTTTTTTCTTTAAATTTA
81314670 ATTTATTTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTTTTCTTTAAATTTA
Found at i:81315255 original size:24 final size:27
Alignment explanation
Indices: 81315198--81315259 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
81315188 TGGAGATGGT
*
81315198 GATGGTGGTGGGGGAGACTTGTAATAG
1 GATGGTGGTGGGGGAGACTTGCAATAG
* *
81315225 TATGGTGGTGGGGGAGACTT-CACT-G
1 GATGGTGGTGGGGGAGACTTGCAATAG
81315250 GA-GGTGGTGG
1 GATGGTGGTGG
81315260 CGACTTGTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 8 0.26
25 2 0.06
26 2 0.06
27 19 0.61
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (27 bp):
GATGGTGGTGGGGGAGACTTGCAATAG
Found at i:81315265 original size:96 final size:96
Alignment explanation
Indices: 81315156--81315904 Score: 566
Period size: 96 Copynumber: 7.8 Consensus size: 96
81315146 TGGTGAAGGT
* *
81315156 GGTGGTGGAGACTTGTAGTAGTAAGGAGGTGGTGGAGATGGTGATGGTGGTGGGGGAGACTTGTA
1 GGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTGGAGATGGAGATGGTGGTGGGGGAGACTTGTA
* * * **
81315221 ATAGTATGGTGGTGGGGGAGACT-TCACTGGA
66 GTAGTATGGAGGAGGGGGAGA-TGGGACTGGA
* * * * * * *
81315252 GGTGGTGGCGACTTGTAGTAGTAAGGTGGTGGTGGAGATGGTGAGGGTGGTGGTGGAGATTTGTA
1 GGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTGGAGATGGAGATGGTGGTGGGGGAGACTTGTA
* * * * *
81315317 GTAGTAAGTAGGTGGTGGAGATGGTGA-TGGT
66 GTAGTATGGAGGAGGGGGAGATGG-GACTGGA
* * * * * * * * * *
81315348 GGTGGTGGAGACTTATAATAGTAAGGTGGGGGTGGTGAAGGAGAAGGTGGAGGAGGAGACTTATA
1 GGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTGGAGATGGAGATGGTGGTGGGGGAGACTTGTA
* * **
81315413 GTAGTATGGTGGTGGGGGAGACT-TCACTGGA
66 GTAGTATGGAGGAGGGGGAGA-TGGGACTGGA
* * * * * * * *
81315444 GGTGGTGGGGACTTGTAGTAGTAAGGTGGTGGTGGGGAAGGAGATAGAGGTGGCGGG-GATTTGT
1 GGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTGGAGATGGAGATGGTGGTGG-GGGAGACTTGT
* * * *
81315508 AGTAGTAAGGAGGAGGTGGTGATGGGGAC-GGT
65 AGTAGTATGGAGGAGGGGGAGAT-GGGACTGGA
* * * * *
81315540 GGTGGTGGAGACTTGTAGTAATATGGAGGAAGTGGAGATGGAGATGGAGGAGGTGGG-GACTTGT
1 GGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTGGAGATGGAGATGGTGGTGG-GGGAGACTTGT
*
81315604 AGTAGTATGGAGGAGGTGGG-GAAGGAGA-TGGA
65 AGTAGTATGGAGGAGG-GGGAGATGG-GACTGGA
* * * * * * * * * *
81315636 GGTGGTGGGGATTTGTAGTAATAAGGAGGAGGTGGTGACGGGGACGGAGGTGGTGGAGACTTATA
1 GGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTGGAGATGGAGATGGTGGTGGGGGAGACTTGTA
*
81315701 GTAATATGGAGGAGGTGGG-GATAGGGAC-GGA
66 GTAGTATGGAGGAGG-GGGAGAT-GGGACTGGA
* * * * * *
81315732 GGTGGTGGAGACTTGTAGTAGTACGGGGGAGGTGGTGATGGGGATAGTGGTGGTGGAGACTTGTA
1 GGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTGGAGATGGAGATGGTGGTGGGGGAGACTTGTA
* * * * *
81315797 GTAGTATAGAGGAGGTGGTGACGGGGA-TGGT
66 GTAGTATGGAGGAGGGGGAGA-TGGGACTGGA
* * * * * * * * * *
81315828 GGTGGAGGAGACTTATAATAGTATGGAGGAGGAGGTGATGGAGACGGTGGTGGTGGAGATTTATA
1 GGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTGGAGATGGAGATGGTGGTGGGGGAGACTTGTA
*
81315893 GTGGTATGGAGG
66 GTAGTATGGAGG
81315905 GTTCAGTACT
Statistics
Matches: 528, Mismatches: 109, Indels: 32
0.79 0.16 0.05
Matches are distributed among these distances:
95 9 0.02
96 509 0.96
97 10 0.02
ACGTcount: A:0.23, C:0.04, G:0.49, T:0.24
Consensus pattern (96 bp):
GGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTGGAGATGGAGATGGTGGTGGGGGAGACTTGTA
GTAGTATGGAGGAGGGGGAGATGGGACTGGA
Found at i:81315338 original size:27 final size:26
Alignment explanation
Indices: 81315252--81315338 Score: 85
Period size: 27 Copynumber: 3.5 Consensus size: 26
81315242 CTTCACTGGA
* *
81315252 GGTGGTGGCGACTTGTAGTAGTAAGGT
1 GGTGGTGGAGATTTGTAGTAGTAA-GT
* *
81315279 GGTGGTGGAGA-TGGT-G-AG--GGT
1 GGTGGTGGAGATTTGTAGTAGTAAGT
81315300 GGTGGTGGAGATTTGTAGTAGTAAGT
1 GGTGGTGGAGATTTGTAGTAGTAAGT
81315326 AGGTGGTGGAGAT
1 -GGTGGTGGAGAT
81315339 GGTGATGGTG
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
21 13 0.27
22 3 0.06
23 1 0.02
24 4 0.08
25 1 0.02
26 5 0.10
27 22 0.45
ACGTcount: A:0.20, C:0.02, G:0.49, T:0.29
Consensus pattern (26 bp):
GGTGGTGGAGATTTGTAGTAGTAAGT
Found at i:81315409 original size:144 final size:144
Alignment explanation
Indices: 81315111--81315904 Score: 731
Period size: 144 Copynumber: 5.5 Consensus size: 144
81315101 ATGCGGAGGA
* * * *
81315111 GGTGGCGGAGACTTATAGTAGTA---AGGTGGTGGAGATGGTGAAGGTGGTGGTGGAGACTTGTA
1 GGTGGTGGAGACTTATAGTAGTATGGAGGAGGTGGAGATGGTGACGGAGGTGGTGGAGACTTGTA
* * * * * * *
81315173 GTAGTAAGGAGGTGGTGGAGATGGTGATGGTGGTGGGGGAGACTTGTAATAGTATGGTGGTGGGG
66 GTAGTAAGGAGGTGGTGGAGATGGAGATGGTGGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTG
* *** *
81315238 GAGAC-TTCACTGGA
131 GTGACGGGGAC-GGT
* * * * * * * *
81315252 GGTGGTGGCGACTTGTAGTAGTAAGGTGGTGGTGGAGATGGTGAGGGTGGTGGTGGAGATTTGTA
1 GGTGGTGGAGACTTATAGTAGTATGGAGGAGGTGGAGATGGTGACGGAGGTGGTGGAGACTTGTA
* * * * * *
81315317 GTAGTAAGTAGGTGGTGGAGATGGTGATGGTGGTGGTGGAGACTTATAATAGTAAGGTGGGGGTG
66 GTAGTAAGGAGGTGGTGGAGATGGAGATGGTGGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTG
* * *
81315382 GTGAAGGAGAAGGT
131 GTGACGGGGACGGT
* * * * * * *
81315396 GGAGGAGGAGACTTATAGTAGTATGGTGGTGGGGGAGACT--TCACTGGAGGTGGTGGGGACTTG
1 GGTGGTGGAGACTTATAGTAGTATGGAGGAGGTGGAGA-TGGTGAC-GGAGGTGGTGGAGACTTG
* * * * * * * *
81315459 TAGTAGTAAGGTGGTGGTGGGGAAGGAGATAGAGGTGGCGGGGATTTGTAGTAGTAAGGAGGAGG
64 TAGTAGTAAGGAGGTGGTGGAGATGGAGATGGTGGTGGTGGAGACTTGTAGTAGTAAGGAGGAGG
*
81315524 TGGTGATGGGGACGGT
129 TGGTGACGGGGACGGT
* * * * * * *
81315540 GGTGGTGGAGACTTGTAGTAATATGGAGGAAGTGGAGATGGAGATGGAGGAGGTGGGGACTTGTA
1 GGTGGTGGAGACTTATAGTAGTATGGAGGAGGTGGAGATGGTGACGGAGGTGGTGGAGACTTGTA
* * * * * * * *
81315605 GTAGTATGGAGGAGGTGGGGAAGGAGATGGAGGTGGTGGGGATTTGTAGTAATAAGGAGGAGGTG
66 GTAGTAAGGAGGTGGTGGAGATGGAGATGGTGGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTG
*
81315670 GTGACGGGGACGGA
131 GTGACGGGGACGGT
* *
81315684 GGTGGTGGAGACTTATAGTAATATGGAGGAGGTGGGGATAGG-GACGGAGGTGGTGGAGACTTGT
1 GGTGGTGGAGACTTATAGTAGTATGGAGGAGGTGGAGAT-GGTGACGGAGGTGGTGGAGACTTGT
* * * * * *
81315748 AGTAGTACGGGGGAGGTGGTGATGGGGATAGTGGTGGTGGAGACTTGTAGTAGTATA-GAGGAGG
65 AGTAGTAAGGAGGTGGTGGAGATGGAGATGGTGGTGGTGGAGACTTGTAGTAGTA-AGGAGGAGG
*
81315812 TGGTGACGGGGATGGT
129 TGGTGACGGGGACGGT
* * * * * * * *
81315828 GGTGGAGGAGACTTATAATAGTATGGAGGAGGAGGTGATGGAGACGGTGGTGGTGGAGATTTATA
1 GGTGGTGGAGACTTATAGTAGTATGGAGGAGGTGGAGATGGTGACGGAGGTGGTGGAGACTTGTA
* *
81315893 GTGGTATGGAGG
66 GTAGTAAGGAGG
81315905 GTTCAGTACT
Statistics
Matches: 546, Mismatches: 96, Indels: 19
0.83 0.15 0.03
Matches are distributed among these distances:
141 20 0.04
143 5 0.01
144 515 0.94
145 6 0.01
ACGTcount: A:0.23, C:0.04, G:0.49, T:0.24
Consensus pattern (144 bp):
GGTGGTGGAGACTTATAGTAGTATGGAGGAGGTGGAGATGGTGACGGAGGTGGTGGAGACTTGTA
GTAGTAAGGAGGTGGTGGAGATGGAGATGGTGGTGGTGGAGACTTGTAGTAGTAAGGAGGAGGTG
GTGACGGGGACGGT
Found at i:81315623 original size:27 final size:26
Alignment explanation
Indices: 81315543--81315670 Score: 87
Period size: 27 Copynumber: 5.2 Consensus size: 26
81315533 GGACGGTGGT
* *
81315543 GGTGGAGACTTGTAGTAATATGGAGGA
1 GGTGGGGA-TTGTAGTAGTATGGAGGA
* *
81315570 AGTGGAGA-TG--G-AG-ATGGAGGA
1 GGTGGGGATTGTAGTAGTATGGAGGA
81315591 GGTGGGGACTTGTAGTAGTATGGAGGA
1 GGTGGGGA-TTGTAGTAGTATGGAGGA
* *
81315618 GGTGGGGA----AGGAG-ATGGAGGT
1 GGTGGGGATTGTAGTAGTATGGAGGA
* *
81315639 GGTGGGGATTTGTAGTAATAAGGAGGA
1 GGTGGGGA-TTGTAGTAGTATGGAGGA
81315666 GGTGG
1 GGTGG
81315671 TGACGGGGAC
Statistics
Matches: 79, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
21 29 0.37
22 5 0.06
23 3 0.04
25 3 0.04
26 5 0.06
27 34 0.43
ACGTcount: A:0.27, C:0.02, G:0.50, T:0.22
Consensus pattern (26 bp):
GGTGGGGATTGTAGTAGTATGGAGGA
Found at i:81315635 original size:21 final size:21
Alignment explanation
Indices: 81315562--81315646 Score: 71
Period size: 21 Copynumber: 3.8 Consensus size: 21
81315552 TTGTAGTAAT
* * *
81315562 ATGGAGGAAGTGGAGATGGAG
1 ATGGAGGAGGTGGGGAAGGAG
*
81315583 ATGGAGGAGGTGGGGACTTGTAGTAG
1 ATGGAGGAGGTGGGGA-----AGGAG
81315609 TATGGAGGAGGTGGGGAAGGAG
1 -ATGGAGGAGGTGGGGAAGGAG
*
81315631 ATGGAGGTGGTGGGGA
1 ATGGAGGAGGTGGGGA
81315647 TTTGTAGTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
21 29 0.56
22 4 0.08
26 3 0.06
27 16 0.31
ACGTcount: A:0.26, C:0.01, G:0.55, T:0.18
Consensus pattern (21 bp):
ATGGAGGAGGTGGGGAAGGAG
Found at i:81315757 original size:27 final size:26
Alignment explanation
Indices: 81315679--81315766 Score: 60
Period size: 27 Copynumber: 3.5 Consensus size: 26
81315669 GGTGACGGGG
* *
81315679 ACGGAGGTGGTGGAGACTTATAGTAAT
1 ACGGAGGAGGTGGAGACTT-TAGTAGT
* * *
81315706 ATGGAGGAGGTGGGGA---TAG--GG
1 ACGGAGGAGGTGGAGACTTTAGTAGT
*
81315727 ACGGAGGTGGTGGAGACTTGTAGTAGT
1 ACGGAGGAGGTGGAGACTT-TAGTAGT
*
81315754 ACGGGGGAGGTGG
1 ACGGAGGAGGTGG
81315767 TGATGGGGAT
Statistics
Matches: 44, Mismatches: 11, Indels: 12
0.66 0.16 0.18
Matches are distributed among these distances:
21 13 0.30
23 3 0.07
25 3 0.07
27 25 0.57
ACGTcount: A:0.24, C:0.06, G:0.50, T:0.20
Consensus pattern (26 bp):
ACGGAGGAGGTGGAGACTTTAGTAGT
Found at i:81315811 original size:48 final size:48
Alignment explanation
Indices: 81315111--81315904 Score: 502
Period size: 48 Copynumber: 16.6 Consensus size: 48
81315101 ATGCGGAGGA
* * * *
81315111 GGTGGCGGAGACTTATAGTAG--TA-AGGTGGTGGAGATGGTGAAGGT
1 GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGAGATGGTGATGGT
*
81315156 GGTGGTGGAGACTTGTAGTAGTA-AGGAGGTGGTGGAGATGGTGATGGT
1 GGTGGTGGAGACTTGTAGTAGTATA-GAGGAGGTGGAGATGGTGATGGT
* * * * * * * *
81315204 GGTGGGGGAGACTTGTAATAGTATGGTGGTGGGGGAGACT--TCACTGGA
1 GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGAGA-TGGTGA-TGGT
* * * *
81315252 GGTGGTGGCGACTTGTAGTAGTA-AGGTGGTGGTGGAGATGGTGAGGGT
1 GGTGGTGGAGACTTGTAGTAGTATA-GAGGAGGTGGAGATGGTGATGGT
* *
81315300 GGTGGTGGAGATTTGTAGTAGTA-AGTAGGTGGTGGAGATGGTGATGGT
1 GGTGGTGGAGACTTGTAGTAGTATAG-AGGAGGTGGAGATGGTGATGGT
* * * * * * * *
81315348 GGTGGTGGAGACTTATAATAGTA-AGGTGGGGGTGGTGAAGGAGAAGGT
1 GGTGGTGGAGACTTGTAGTAGTATA-GAGGAGGTGGAGATGGTGATGGT
* * * * * * * * *
81315396 GGAGGAGGAGACTTATAGTAGTATGGTGGTGGGGGAGACT--TCACTGGA
1 GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGAGA-TGGTGA-TGGT
* * * * * * * *
81315444 GGTGGTGGGGACTTGTAGTAGTA-AGGTGGTGGTGGGGAAGGAGATAGA
1 GGTGGTGGAGACTTGTAGTAGTATA-GAGGAGGTGGAGATGGTGATGGT
* * * * * *
81315492 GGTGGCGGGGATTTGTAGTAGTA-AGGAGGAGGTGGTGATGGGGACGGT
1 GGTGGTGGAGACTTGTAGTAGTATA-GAGGAGGTGGAGATGGTGATGGT
* * * * *
81315540 GGTGGTGGAGACTTGTAGTAATATGGAGGAAGTGGAGATGGAGATGGA
1 GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGAGATGGTGATGGT
* * * * * * *
81315588 GGAGGTGGGGACTTGTAGTAGTATGGAGGAGGTGGGGAAGGAGATGGA
1 GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGAGATGGTGATGGT
* * * * * * * *
81315636 GGTGGTGGGGATTTGTAGTAATA-AGGAGGAGGTGGTGACGGGGACGGA
1 GGTGGTGGAGACTTGTAGTAGTATA-GAGGAGGTGGAGATGGTGATGGT
* * * * * *
81315684 GGTGGTGGAGACTTATAGTAATATGGAGGAGGTGGGGATAGG-GACGGA
1 GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGAGAT-GGTGATGGT
** * * * *
81315732 GGTGGTGGAGACTTGTAGTAGTACGGGGGAGGTGGTGATGGGGATAGT
1 GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGAGATGGTGATGGT
* * *
81315780 GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGTGACGGGGATGGT
1 GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGAGATGGTGATGGT
* * * * * * * *
81315828 GGTGGAGGAGACTTATAATAGTATGGAGGAGGAGGTGATGGAGACGGT
1 GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGAGATGGTGATGGT
* * * *
81315876 GGTGGTGGAGATTTATAGTGGTATGGAGG
1 GGTGGTGGAGACTTGTAGTAGTATAGAGG
81315905 GTTCAGTACT
Statistics
Matches: 607, Mismatches: 119, Indels: 43
0.79 0.15 0.06
Matches are distributed among these distances:
45 19 0.03
46 1 0.00
47 7 0.01
48 573 0.94
49 7 0.01
ACGTcount: A:0.23, C:0.04, G:0.49, T:0.24
Consensus pattern (48 bp):
GGTGGTGGAGACTTGTAGTAGTATAGAGGAGGTGGAGATGGTGATGGT
Found at i:81316024 original size:48 final size:48
Alignment explanation
Indices: 81315927--81316062 Score: 139
Period size: 48 Copynumber: 2.8 Consensus size: 48
81315917 ATGTTTCGAT
* * * *
81315927 GGAGGTGGTGGTGACTTATACACATAAGGTGGTGGTGGAGAAGGCGAA
1 GGAGATGGTGGAGACTTATACACATAAGGTGGTGGGGGAGAAGGAGAA
* * *
81315975 GGAGATGGTGGAGATTTATACACGTATGGTGGTGGGGGAGATA-GAGAA
1 GGAGATGGTGGAGACTTATACACATAAGGTGGTGGGGGAGA-AGGAGAA
* * * * * *
81316023 GGTGGTGGAGGTGACTTATACTCATAAGGTGGTGGAGGAG
1 GGAGATGGTGGAGACTTATACACATAAGGTGGTGGGGGAG
81316063 GTGAAGAGTA
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
48 70 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.07, G:0.44, T:0.23
Consensus pattern (48 bp):
GGAGATGGTGGAGACTTATACACATAAGGTGGTGGGGGAGAAGGAGAA
Found at i:81317920 original size:14 final size:15
Alignment explanation
Indices: 81317897--81317926 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
81317887 ACAATTTCTA
81317897 TATTTAAATTTAAAT
1 TATTTAAATTTAAAT
81317912 TATTT-AATTTAAAT
1 TATTTAAATTTAAAT
81317926 T
1 T
81317927 GGGGTTGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTTAAATTTAAAT
Found at i:81318580 original size:15 final size:15
Alignment explanation
Indices: 81318562--81318609 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
81318552 ACAAGTTATT
81318562 TTTTTATTATTAATG
1 TTTTTATTATTAATG
81318577 TTTTTATTATT-A--
1 TTTTTATTATTAATG
*
81318589 -TTATATTATTAATG
1 TTTTTATTATTAATG
81318603 TTTTTAT
1 TTTTTAT
81318610 AGCATACTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
11 9 0.33
12 1 0.04
14 1 0.04
15 16 0.59
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (15 bp):
TTTTTATTATTAATG
Found at i:81318595 original size:26 final size:26
Alignment explanation
Indices: 81318557--81318609 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
81318547 TACCCACAAG
* *
81318557 TTATTTTTTTATTATTAATGTTTTTA
1 TTATTATTATATTATTAATGTTTTTA
81318583 TTATTATTATATTATTAATGTTTTTA
1 TTATTATTATATTATTAATGTTTTTA
81318609 T
1 T
81318610 AGCATACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (26 bp):
TTATTATTATATTATTAATGTTTTTA
Found at i:81320870 original size:39 final size:38
Alignment explanation
Indices: 81320816--81320893 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 38
81320806 GTGTTAACAA
* * *
81320816 ATGGAAAATATAGAAAAACTAAATTAAAAGAA-ATAGAAG
1 ATGGAAAACAAAGAAAAA--AAATTAAAAGAACATAAAAG
*
81320855 ATGGAAAACAAAGAAAAAAAGTTAAAAGAACATAAAAG
1 ATGGAAAACAAAGAAAAAAAATTAAAAGAACATAAAAG
81320893 A
1 A
81320894 AAAGAATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
37 11 0.32
38 7 0.21
39 16 0.47
ACGTcount: A:0.67, C:0.04, G:0.15, T:0.14
Consensus pattern (38 bp):
ATGGAAAACAAAGAAAAAAAATTAAAAGAACATAAAAG
Found at i:81322236 original size:14 final size:15
Alignment explanation
Indices: 81322211--81322239 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81322201 TTAGGAAACG
81322211 TACATAAAAAATATA
1 TACATAAAAAATATA
81322226 TACAT-AAAAATATA
1 TACATAAAAAATATA
81322240 CAACAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (15 bp):
TACATAAAAAATATA
Found at i:81322269 original size:24 final size:24
Alignment explanation
Indices: 81322247--81322320 Score: 71
Period size: 28 Copynumber: 3.0 Consensus size: 24
81322237 ATACAACAAT
81322247 AATATAAATA-ATA-ATATGTACA
1 AATATAAATATATATATATGTACA
* *
81322269 AATATATATATATATATATGTATA
1 AATATAAATATATATATATGTACA
*
81322293 TATATATACATATATATACATATGTACA
1 -A-ATATA-A-ATATATATATATGTACA
81322321 TAAAATATAC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
22 9 0.22
23 3 0.07
24 8 0.20
25 1 0.02
26 5 0.12
28 15 0.37
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.39
Consensus pattern (24 bp):
AATATAAATATATATATATGTACA
Done.