Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 282 of 292
Found at i:81322277 original size:2 final size:2
Alignment explanation
Indices: 81322270--81322315 Score: 65
Period size: 2 Copynumber: 23.0 Consensus size: 2
81322260 ATATGTACAA
* * *
81322270 AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AC AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81322312 AT AT
1 AT AT
81322316 GTACATAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:81322515 original size:24 final size:25
Alignment explanation
Indices: 81322443--81322516 Score: 64
Period size: 24 Copynumber: 3.0 Consensus size: 25
81322433 AGTATTTAAG
* *
81322443 AATATATACATAATAAATACATAAGA
1 AATATATACATAAT-AATATATAAAA
***
81322469 AATATATA-ACTAATGGCAT-TAAAA
1 AATATATACA-TAATAATATATAAAA
81322493 AATATATACATAAT-ATATATAAAA
1 AATATATACATAATAATATATAAAA
81322517 TACCTAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
23 2 0.05
24 21 0.55
25 3 0.08
26 12 0.32
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (25 bp):
AATATATACATAATAATATATAAAA
Found at i:81323891 original size:30 final size:30
Alignment explanation
Indices: 81323855--81323916 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
81323845 TTTTGAAAAA
81323855 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
81323885 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
81323915 CA
1 CA
81323917 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:81324033 original size:14 final size:14
Alignment explanation
Indices: 81324010--81324044 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
81324000 TGAGTTGATT
81324010 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
81324023 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
81324037 TTTGAAAA
1 TTTGAAAA
81324045 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:81324345 original size:72 final size:73
Alignment explanation
Indices: 81324062--81324594 Score: 397
Period size: 72 Copynumber: 6.8 Consensus size: 73
81324052 ACATGTAACC
* * * *
81324062 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
81324127 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
81324140 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
81324205 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
81324218 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
81324283 ACGTGTCT
66 GCGTGTCT
* ** * * *
81324291 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
81324355 GCGTGTCC
66 GCGTGTCT
*
81324363 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTTTGAAATGCAGAAATTGAA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--------TTTTTTGAAA-ACAGAAATTG--
** ** *
81324428 AAATGGAAATTGAAAATACCTCGACGTGTGAT
55 --A---AAA-T--ACCT-CAGC---GTGT-CT
* * *
81324460 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAAATTACCT
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCT
81324525 CAGCGTGTC-
64 CAGCGTGTCT
* *
81324534 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAAAAATTGAAAA
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
81324595 ACGGAAATTG
Statistics
Matches: 366, Mismatches: 56, Indels: 69
0.75 0.11 0.14
Matches are distributed among these distances:
72 65 0.18
73 29 0.08
74 43 0.12
75 32 0.09
76 14 0.04
77 41 0.11
78 5 0.01
79 51 0.14
80 2 0.01
81 8 0.02
82 10 0.03
83 2 0.01
86 2 0.01
89 2 0.01
90 10 0.03
91 9 0.02
92 2 0.01
93 2 0.01
96 4 0.01
97 1 0.00
98 32 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:81324547 original size:172 final size:168
Alignment explanation
Indices: 81324259--81324737 Score: 711
Period size: 165 Copynumber: 2.9 Consensus size: 168
81324249 TGATTTTTTG
* * * ** * *
81324259 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
81324322 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
81324386 ATATGAGTTGATTTTTTTTTTTTTTGAAATGCAGAAATTGA
131 ATATGAGTTGA---TTTTTTTTTTTGAAAGGCAAAAATTGA
*
81324427 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
81324492 TGACTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
81324557 AATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 AATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * *
81324592 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
81324657 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
81324722 AATATGAGTTGATTTT
130 AATATGAGTTGATTTT
81324738 GAAAAAGTAG
Statistics
Matches: 284, Mismatches: 19, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
165 157 0.55
168 27 0.10
169 1 0.00
170 30 0.11
172 69 0.24
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (168 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:81324556 original size:74 final size:75
Alignment explanation
Indices: 81324433--81324594 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 75
81324423 TTGAAAAATG
*
81324433 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
81324498 TTTTGACAACA
65 TTTTGACAACA
* * *
81324509 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
81324572 TTTTGA-AAGGCA
65 TTTTGACAA--CA
*
81324584 AAAATTGAAAA
1 GAAATTGAAAA
81324595 ACGGAAATTG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
73 2 0.03
74 42 0.55
75 12 0.16
76 21 0.27
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAACA
Found at i:81324723 original size:74 final size:75
Alignment explanation
Indices: 81324598--81324737 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 75
81324588 TTGAAAAACG
* *
81324598 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
81324663 TTTTGACAACA
65 TTTTGACAACA
* * *
81324674 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
81324738 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:81324936 original size:72 final size:71
Alignment explanation
Indices: 81324802--81324967 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
81324792 TGAACAACGT
* * * *
81324802 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
81324867 GAGTTG
66 GAGTTG
*
81324873 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
81324938 TGAGTTG
65 TGAGTTG
**
81324945 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
81324968 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:81325110 original size:71 final size:71
Alignment explanation
Indices: 81324967--81325230 Score: 347
Period size: 70 Copynumber: 3.7 Consensus size: 71
81324957 AAAAATTAAA
* * * * * *
81324967 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGTGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
81325030 GCCCCG
66 GCCCCG
* *
81325036 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
81325101 GTCTTG
66 GCCCCG
* * *
81325107 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
81325170 TGCCCCG
65 TGCCCCG
*
81325177 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
81325231 GGCTTAACTC
Statistics
Matches: 166, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 57 0.34
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:81325188 original size:70 final size:69
Alignment explanation
Indices: 81324967--81325230 Score: 330
Period size: 71 Copynumber: 3.7 Consensus size: 69
81324957 AAAAATTAAA
* ** * * * *
81324967 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGTGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
81325032 CCCG
66 CCCG
* * *
81325036 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
81325101 GTCTTG
64 GCCCCG
* *
81325107 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
81325172 CCCCG
65 CCCCG
*
81325177 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
81325231 GGCTTAACTC
Statistics
Matches: 166, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 59 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:81325213 original size:263 final size:257
Alignment explanation
Indices: 81324805--81325397 Score: 1033
Period size: 257 Copynumber: 2.3 Consensus size: 257
81324795 ACAACGTAAA
* * * * * *
81324805 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
81324870 TTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
66 TTG--ATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCA
81324935 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
129 ATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAAT
*
81325000 TTAAAACATAAACTAAAAATACCTCAGTGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
194 TT-----A-AAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
81325065 TGATT
253 TGATT
81325070 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
81325135 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
81325200 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
81325265 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
81325327 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
81325392 TTGATT
66 TTGATT
81325398 TTCCTTGAAA
Statistics
Matches: 319, Mismatches: 9, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
257 129 0.40
258 1 0.00
263 127 0.40
265 62 0.19
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (257 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:81330415 original size:12 final size:12
Alignment explanation
Indices: 81330395--81330430 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
81330385 TGGGATATGC
*
81330395 AATGTATGAATG
1 AATGCATGAATG
81330407 AATGCATGAATG
1 AATGCATGAATG
81330419 AATGCATGAATG
1 AATGCATGAATG
81330431 TCAAATGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:81332206 original size:12 final size:14
Alignment explanation
Indices: 81332177--81332204 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81332167 TTAGGAAACG
81332177 TACATAAAAATATA
1 TACATAAAAATATA
81332191 TACATAAAAATATA
1 TACATAAAAATATA
81332205 CAACAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (14 bp):
TACATAAAAATATA
Found at i:81332240 original size:2 final size:2
Alignment explanation
Indices: 81332235--81332274 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
81332225 ATATGTACAA
*
81332235 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81332275 GTACATAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:81332279 original size:8 final size:8
Alignment explanation
Indices: 81332239--81332281 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
81332229 GTACAAATAT
*
81332239 ATATATAT
1 ATATATAC
*
81332247 ATATATAT
1 ATATATAC
*
81332255 ATATATAT
1 ATATATAC
81332263 ATATATAC
1 ATATATAC
*
81332271 ATATGTAC
1 ATATATAC
81332279 ATA
1 ATA
81332282 AAATATACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (8 bp):
ATATATAC
Found at i:81332472 original size:24 final size:24
Alignment explanation
Indices: 81332378--81332473 Score: 70
Period size: 24 Copynumber: 4.0 Consensus size: 24
81332368 AAATATATAT
* * * *
81332378 ATATATATATAATAGTATTTAAGA
1 ATATATACATAATAATATTAAAAA
* *
81332402 ATATATACATAATAATACATAAGAA
1 ATATATACATAATAATA-TTAAAAA
***
81332427 ATATATA-ACTAATGGCATTAAAAA
1 ATATATACA-TAATAATATTAAAAA
81332451 ATATATACATAAT-ATATATAAAA
1 ATATATACATAATAATAT-TAAAA
81332474 TACCTAAAAA
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
23 2 0.04
24 37 0.67
25 16 0.29
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (24 bp):
ATATATACATAATAATATTAAAAA
Found at i:81332949 original size:13 final size:12
Alignment explanation
Indices: 81332933--81332988 Score: 51
Period size: 13 Copynumber: 4.6 Consensus size: 12
81332923 GGTGGCTAGG
*
81332933 TTTTTTTATCTT
1 TTTTTTTTTCTT
***
81332945 TTTTTGTTAGGTT
1 TTTTT-TTTTCTT
81332958 TTTCTTTTTTCTT
1 TTT-TTTTTTCTT
81332971 TTTTTTTTT-TT
1 TTTTTTTTTCTT
81332982 TTTTTTT
1 TTTTTTT
81332989 GGGTTAGGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
11 9 0.24
12 11 0.30
13 15 0.41
14 2 0.05
ACGTcount: A:0.04, C:0.05, G:0.05, T:0.86
Consensus pattern (12 bp):
TTTTTTTTTCTT
Found at i:81333955 original size:25 final size:26
Alignment explanation
Indices: 81333910--81333958 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
81333900 CTTAATAATA
*
81333910 ACTTAAAATCTATATATTTTTATTAC
1 ACTTAAAATCTATATAATTTTATTAC
81333936 ACTTAAATATC-AT-TAATTTTATT
1 ACTTAAA-ATCTATATAATTTTATT
81333959 TTGTTACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 9 0.43
26 9 0.43
27 3 0.14
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (26 bp):
ACTTAAAATCTATATAATTTTATTAC
Found at i:81337165 original size:18 final size:18
Alignment explanation
Indices: 81337133--81337167 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
81337123 TTTATATACC
81337133 AAATTACATATTAAATTA
1 AAATTACATATTAAATTA
81337151 AAATT-CATATATAAATT
1 AAATTACATAT-TAAATT
81337168 TAGAATGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATTACATATTAAATTA
Found at i:81339792 original size:20 final size:20
Alignment explanation
Indices: 81339767--81339804 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81339757 GAATATCTAT
*
81339767 CTTTATCAATTATATTAAGA
1 CTTTATCAACTATATTAAGA
*
81339787 CTTTATTAACTATATTAA
1 CTTTATCAACTATATTAA
81339805 ATTGAGTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (20 bp):
CTTTATCAACTATATTAAGA
Found at i:81347131 original size:11 final size:11
Alignment explanation
Indices: 81347103--81347142 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
81347093 ACTTCATTAA
81347103 TTTTT-TTTC-
1 TTTTTCTTTCT
*
81347112 TTTTACTTTCT
1 TTTTTCTTTCT
81347123 TTTTTCTTTCT
1 TTTTTCTTTCT
81347134 TTTTTCTTT
1 TTTTTCTTT
81347143 TTCCACGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
9 4 0.15
10 4 0.15
11 19 0.70
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTCTTTCT
Found at i:81347145 original size:17 final size:18
Alignment explanation
Indices: 81347105--81347144 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
81347095 TTCATTAATT
81347105 TTTTTTCTTT-TACTTTC
1 TTTTTTCTTTCTACTTTC
**
81347122 TTTTTTCTTTCTTTTTTC
1 TTTTTTCTTTCTACTTTC
81347140 TTTTT
1 TTTTT
81347145 CCACGTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTCTTTCTACTTTC
Found at i:81367142 original size:218 final size:218
Alignment explanation
Indices: 81366836--81367277 Score: 742
Period size: 218 Copynumber: 2.0 Consensus size: 218
81366826 TACTAGTGTA
*
81366836 TTTCTTTTGGAGTTTTGAGGAAAAATCATTTACCAAATAAGTCAACAAAACTACTCATACTACAG
1 TTTCTTTTGGAGTTTCGAGGAAAAATCATTTACCAAATAAGTCAACAAAACTACTCATACTACAG
81366901 TGTTTTTATGTCAACTACAACTAGTTTCACGTGACCTGTTTTTATAAGATTTGTCCTACTCATAT
66 TGTTTTTATGTCAACTACAACTAGTTTCACGTGACCTGTTTTTATAAGATTTGTCCTACTCATAT
* * *
81366966 GCCATCTTTGGCTTACTTTCTATACATTGCAGTTGGAGATTCCAAAACAGTTACTTAATCCAAAT
131 GCCAGCTTTGGCTTACTATCTATACATTGCAGTTGGAGATTCCAAAACAATTACTTAATCCAAAT
81367031 TTGTTCAATGCTTGGATGATACT
196 TTGTTCAATGCTTGGATGATACT
* *
81367054 TTTCTTTTGGAGTTTCGAGGAAAAATCATTTACCAAATATA-TCGACAAAATTACTCATACTACA
1 TTTCTTTTGGAGTTTCGAGGAAAAATCATTTACCAAATA-AGTCAACAAAACTACTCATACTACA
* ** **
81367118 GTGTTTTTATGTCAACTGCAACTAGTTTCTTGTGACCTGTTTTTATAAGATTTGTTGTACTCATA
65 GTGTTTTTATGTCAACTACAACTAGTTTCACGTGACCTGTTTTTATAAGATTTGTCCTACTCATA
* *
81367183 TGCCAGCTTTGGCTTACTATCTATACTTTGCAGTTGGAGATTCCAAAACAATTACTTGATCCAAA
130 TGCCAGCTTTGGCTTACTATCTATACATTGCAGTTGGAGATTCCAAAACAATTACTTAATCCAAA
*
81367248 TTTGTTCAATGCTTGGATGATGCT
195 TTTGTTCAATGCTTGGATGATACT
81367272 TTTCTT
1 TTTCTT
81367278 AAATGTTTTG
Statistics
Matches: 209, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
218 208 1.00
219 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (218 bp):
TTTCTTTTGGAGTTTCGAGGAAAAATCATTTACCAAATAAGTCAACAAAACTACTCATACTACAG
TGTTTTTATGTCAACTACAACTAGTTTCACGTGACCTGTTTTTATAAGATTTGTCCTACTCATAT
GCCAGCTTTGGCTTACTATCTATACATTGCAGTTGGAGATTCCAAAACAATTACTTAATCCAAAT
TTGTTCAATGCTTGGATGATACT
Found at i:81387555 original size:29 final size:27
Alignment explanation
Indices: 81387522--81387603 Score: 83
Period size: 30 Copynumber: 2.8 Consensus size: 27
81387512 ATAAATCCCA
81387522 AATTTATACATAAATTTTGATTAATAT
1 AATTTATACATAAATTTTGATTAATAT
* * *
81387549 GCAATTTGATACATGAATTTTAATTTGATAT
1 --AATTT-ATACATAAATTTTGA-TTAATAT
81387580 AATTGTATACATAAAATTTTGATT
1 AATT-TATACAT-AAATTTTGATT
81387604 GTGGTTCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
29 17 0.39
30 21 0.48
31 6 0.14
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.46
Consensus pattern (27 bp):
AATTTATACATAAATTTTGATTAATAT
Found at i:81387706 original size:19 final size:21
Alignment explanation
Indices: 81387682--81387720 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
81387672 CAATTTATTT
81387682 TTATAT-TGGATA-AATATAA
1 TTATATGTGGATACAATATAA
*
81387701 TTATATGTGTATACAATATA
1 TTATATGTGGATACAATATA
81387721 CAAACATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 5 0.29
21 6 0.35
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.44
Consensus pattern (21 bp):
TTATATGTGGATACAATATAA
Found at i:81391116 original size:29 final size:27
Alignment explanation
Indices: 81391063--81391123 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 27
81391053 AAAAACATTC
* *
81391063 TTAAATTAATATTAATATATTTTATAA
1 TTAAATTAATAATAAGATATTTTATAA
*
81391090 TTAAATTAAATAAATAAGATATTTTATCA
1 TTAAATT-AAT-AATAAGATATTTTATAA
81391119 TTAAA
1 TTAAA
81391124 AGTAGTGTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 7 0.24
28 3 0.10
29 19 0.66
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (27 bp):
TTAAATTAATAATAAGATATTTTATAA
Found at i:81394587 original size:14 final size:14
Alignment explanation
Indices: 81394570--81394605 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
81394560 AATAAATTAA
81394570 ATTTTTTAAAAATT
1 ATTTTTTAAAAATT
*
81394584 ATTTATTAAAAATT
1 ATTTTTTAAAAATT
*
81394598 AATTTTTA
1 ATTTTTTA
81394606 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTTTTTAAAAATT
Found at i:81396779 original size:28 final size:27
Alignment explanation
Indices: 81396714--81396790 Score: 75
Period size: 28 Copynumber: 2.8 Consensus size: 27
81396704 ATTATATAAA
* *
81396714 AAATAATTTTTATTTATTTTTAATCAT
1 AAATACTTTTTATTTAATTTTAATCAT
**
81396741 ATTTACTTTTTTATTTCCAATTTTAAT-AT
1 AAATAC-TTTTTATTT--AATTTTAATCAT
*
81396770 AAATACTTTTTATTTTATTTT
1 AAATACTTTTTATTTAATTTT
81396791 CAATTTTTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
26 5 0.12
27 3 0.08
28 18 0.45
29 6 0.15
30 8 0.20
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (27 bp):
AAATACTTTTTATTTAATTTTAATCAT
Found at i:81396899 original size:17 final size:18
Alignment explanation
Indices: 81396866--81396904 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
81396856 TGTTTTTTGT
*
81396866 TTATATGTTTTTGATTTA
1 TTATATGTTTTTAATTTA
*
81396884 TTATAT-TTTTTAATTTT
1 TTATATGTTTTTAATTTA
81396901 TTAT
1 TTAT
81396905 TTAATGAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (18 bp):
TTATATGTTTTTAATTTA
Found at i:81400133 original size:12 final size:12
Alignment explanation
Indices: 81400116--81400143 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
81400106 GAGTCTTTGG
81400116 AAGATTGGGGAA
1 AAGATTGGGGAA
81400128 AAGATTGGGGAA
1 AAGATTGGGGAA
81400140 AAGA
1 AAGA
81400144 AATGTTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.39, T:0.14
Consensus pattern (12 bp):
AAGATTGGGGAA
Found at i:81406229 original size:14 final size:14
Alignment explanation
Indices: 81406212--81406240 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81406202 ACTTTGACAA
81406212 AGTGTAAAATAAGT
1 AGTGTAAAATAAGT
81406226 AGTGTAAAATAAGT
1 AGTGTAAAATAAGT
81406240 A
1 A
81406241 AATGTAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.28
Consensus pattern (14 bp):
AGTGTAAAATAAGT
Found at i:81406250 original size:14 final size:14
Alignment explanation
Indices: 81406214--81406248 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
81406204 TTTGACAAAG
*
81406214 TGTAAAATAAGTAG
1 TGTAAAATAAGTAA
81406228 TGTAAAATAAGTAAA
1 TGTAAAATAAGT-AA
81406243 TGTAAA
1 TGTAAA
81406249 TAGAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (14 bp):
TGTAAAATAAGTAA
Found at i:81409190 original size:19 final size:18
Alignment explanation
Indices: 81409168--81409207 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
81409158 TATTCTAAAC
*
81409168 ATATATTTTTAGTATTTTT
1 ATATATTTTTAAT-TTTTT
81409187 ATATATTTTTAATTTTTT
1 ATATATTTTTAATTTTTT
81409205 ATA
1 ATA
81409208 ACAAATCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
ATATATTTTTAATTTTTT
Found at i:81409203 original size:8 final size:10
Alignment explanation
Indices: 81409168--81409207 Score: 50
Period size: 9 Copynumber: 4.3 Consensus size: 10
81409158 TATTCTAAAC
81409168 ATATATTTTT
1 ATATATTTTT
*
81409178 A-GTATTTTT
1 ATATATTTTT
81409187 ATATATTTTT
1 ATATATTTTT
81409197 A-AT-TTTTT
1 ATATATTTTT
81409205 ATA
1 ATA
81409208 ACAAATCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
8 6 0.23
9 11 0.42
10 9 0.35
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (10 bp):
ATATATTTTT
Found at i:81409254 original size:29 final size:29
Alignment explanation
Indices: 81409199--81409255 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
81409189 ATATTTTTAA
* ** *
81409199 TTTTTTATAACAAATCATTTTTTTAAAAT
1 TTTTTTAAAACAAATCAAATTTATAAAAT
81409228 TTTTTTAAAACAAATCAAATTTATAAAA
1 TTTTTTAAAACAAATCAAATTTATAAAA
81409256 AAATATTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.47
Consensus pattern (29 bp):
TTTTTTAAAACAAATCAAATTTATAAAAT
Found at i:81414984 original size:2 final size:2
Alignment explanation
Indices: 81414957--81415012 Score: 84
Period size: 2 Copynumber: 30.0 Consensus size: 2
81414947 ATGTTTTAAT
81414957 TA TA T- TA TA T- TA TA T- TA TA T- TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81414995 TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
81415013 AACTAAAGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
1 4 0.08
2 46 0.92
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:81416877 original size:18 final size:18
Alignment explanation
Indices: 81416856--81417046 Score: 158
Period size: 18 Copynumber: 10.6 Consensus size: 18
81416846 TAACTAATTA
81416856 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
81416874 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
*
81416892 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
81416910 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
81416928 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
81416946 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
81416964 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* * *
81416982 TTATTGAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
*
81417001 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
*
81417018 TTACTGAATAGTTGACTG
1 TTACTGAATAATTGACTG
*
81417036 TTACTGGATAA
1 TTACTGAATAA
81417047 CCGATCAATT
Statistics
Matches: 140, Mismatches: 23, Indels: 20
0.77 0.13 0.11
Matches are distributed among these distances:
17 20 0.14
18 103 0.74
19 17 0.12
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:81416981 original size:72 final size:72
Alignment explanation
Indices: 81416844--81417046 Score: 191
Period size: 72 Copynumber: 2.8 Consensus size: 72
81416834 AAAGGTATAA
* * * * * * *
81416844 AATAACTAATTATTACTGAATAATTGA-CTGTTACCGGATAATTGACTGTTACTGGATATTAGAC
1 AATAACTAATTATTACTGAATAATTGATC-ATTACTGAATAACTGACTGTCACTGAATAATAGAC
81416908 TGTTACTG
65 TGTTACTG
*
81416916 AATAACTGAA-TATTACTGAATAATTGATCATTACTGAATAACTGATTGTCACTGAATGAAT-GA
1 AATAACT-AATTATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAAT-AATAGA
*
81416979 CTGTTATTG
64 CTGTTACTG
* * ** * *
81416988 AATAACTTAATTGTTACTGAAT-ATCTGAT-TTTACTGAATAGTTGACTGTTACTGGATAA
1 AATAAC-TAATTATTACTGAATAAT-TGATCATTACTGAATAACTGACTGTCACTGAATAA
81417047 CCGATCAATT
Statistics
Matches: 109, Mismatches: 16, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
71 2 0.02
72 87 0.80
73 20 0.18
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (72 bp):
AATAACTAATTATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAATAATAGACT
GTTACTG
Found at i:81417047 original size:54 final size:53
Alignment explanation
Indices: 81416856--81417046 Score: 179
Period size: 54 Copynumber: 3.5 Consensus size: 53
81416846 TAACTAATTA
* * * * *
81416856 TTACTGAATAATTGACTGTTACCGGATAATTGACTGTTACTGGATAT-TAGACTG
1 TTACTGAATAATTGACTGTTACTGAATAATTGATTGTTACTGAATATCT-GA-TT
* * * ** *
81416910 TTACTGAATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATT
1 TTACTGAATAATTGACTGTTACTGAATAATTGATTGTTACTGAATATCTGATT
* * *
81416963 GTCACTGAATGAA-TGACTGTTATTGAATAACTTAATTGTTACTGAATATCTGATT
1 -TTACTGAAT-AATTGACTGTTACTGAATAA-TTGATTGTTACTGAATATCTGATT
* *
81417018 TTACTGAATAGTTGACTGTTACTGGATAA
1 TTACTGAATAATTGACTGTTACTGAATAA
81417047 CCGATCAATT
Statistics
Matches: 109, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
53 2 0.02
54 84 0.77
55 23 0.21
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.38
Consensus pattern (53 bp):
TTACTGAATAATTGACTGTTACTGAATAATTGATTGTTACTGAATATCTGATT
Found at i:81417124 original size:36 final size:36
Alignment explanation
Indices: 81416856--81417139 Score: 164
Period size: 36 Copynumber: 7.7 Consensus size: 36
81416846 TAACTAATTA
* * * *
81416856 TTACTGAATAATTGACTGTTACCGGATAATTGACTG
1 TTACTGAATAATTGATTGTTACTGAATAACTGACTG
* * * *
81416892 TTACTGGAT-ATTAGACTGTTACTGAATAACTGAATA
1 TTACTGAATAATT-GATTGTTACTGAATAACTGACTG
** *
81416928 TTACTGAATAATTGATCATTACTGAATAACTGATTG
1 TTACTGAATAATTGATTGTTACTGAATAACTGACTG
* * * * *
81416964 TCACTGAATGAA-TGACTGTTATTGAATAACTTAATTG
1 TTACTGAAT-AATTGATTGTTACTGAATAAC-TGACTG
**
81417001 TTACTGAAT-ATCTGATT-TTACTGAATAGTTGACTG
1 TTACTGAATAAT-TGATTGTTACTGAATAACTGACTG
* ** ** *
81417036 TTACTGGATAACCGATCAATTGATCGAAACTGAATAACTGGTTA
1 TTACT-G---A---AT-AATTGATTGTTACTGAATAACTGACTG
* * *
81417080 TTATTGAATATTTGATTGTTACCGAATAACTGACTG
1 TTACTGAATAATTGATTGTTACTGAATAACTGACTG
* *
81417116 TTACTGAATAAATAATTGTT-CTGA
1 TTACTGAATAATTGATTGTTACTGA
81417140 GAGTTAATGA
Statistics
Matches: 185, Mismatches: 47, Indels: 33
0.70 0.18 0.12
Matches are distributed among these distances:
35 16 0.09
36 119 0.64
37 24 0.13
39 1 0.01
40 1 0.01
42 2 0.01
43 5 0.03
44 17 0.09
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.38
Consensus pattern (36 bp):
TTACTGAATAATTGATTGTTACTGAATAACTGACTG
Found at i:81419201 original size:5 final size:5
Alignment explanation
Indices: 81419191--81419238 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
81419181 TTACTTATTT
81419191 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
81419239 ACAATAATAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:81419368 original size:21 final size:22
Alignment explanation
Indices: 81419329--81419381 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
81419319 CATACAATTG
*
81419329 TTAAAATAATATTATAATATCA
1 TTAAAATAATATTACAATATCA
*
81419351 TTAATATAA-ATTACAATAT-A
1 TTAAAATAATATTACAATATCA
*
81419371 ATAAAATAATA
1 TTAAAATAATA
81419382 ATATAGTCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 8 0.31
21 10 0.38
22 8 0.31
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAAAATAATATTACAATATCA
Found at i:81429900 original size:31 final size:30
Alignment explanation
Indices: 81429856--81429919 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
81429846 ATTATGAAAT
* *
81429856 AAATGTTAAAATTTATTTAAGTATAAATTA
1 AAATATTAAAATTTATTTAAATATAAATTA
*
81429886 AAATATTAATAATTTATTTAAATGTAAATTA
1 AAATATTAA-AATTTATTTAAATATAAATTA
81429917 AAA
1 AAA
81429920 GGTAAGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 8 0.27
31 22 0.73
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (30 bp):
AAATATTAAAATTTATTTAAATATAAATTA
Found at i:81434457 original size:39 final size:39
Alignment explanation
Indices: 81434403--81434481 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
81434393 TAATCAAAAT
81434403 TATATACAACTGATGAAAGACTTTAATGTTATTAATAGC
1 TATATACAACTGATGAAAGACTTTAATGTTATTAATAGC
81434442 TATATACAACTGATGAAAGACTTTAATGTTATTAATAGC
1 TATATACAACTGATGAAAGACTTTAATGTTATTAATAGC
81434481 T
1 T
81434482 TACTTTTAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.37
Consensus pattern (39 bp):
TATATACAACTGATGAAAGACTTTAATGTTATTAATAGC
Found at i:81450424 original size:26 final size:26
Alignment explanation
Indices: 81450402--81450456 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
81450392 TTTTTATGTG
81450402 TTAAAATATA-TATATTAAATTATTA
1 TTAAAATATAGTATATTAAATTATTA
* * *
81450427 TTATATTATAGTATATTATATTATATA
1 TTAAAATATAGTATATTAAATTAT-TA
81450454 TTA
1 TTA
81450457 TATTATATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.32
26 12 0.48
27 5 0.20
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
TTAAAATATAGTATATTAAATTATTA
Found at i:81450433 original size:5 final size:5
Alignment explanation
Indices: 81450407--81450464 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
81450397 ATGTGTTAAA
* *
81450407 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
81450456 ATATT ATAT
1 ATATT ATAT
81450465 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 31 0.69
6 10 0.22
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:81450443 original size:10 final size:9
Alignment explanation
Indices: 81450408--81450465 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
81450398 TGTGTTAAAA
81450408 TATATATAT
1 TATATATAT
*
81450417 TAAAT-TAT
1 TATATATAT
81450425 TAT-TATAT
1 TATATATAT
81450433 TATAGTATAT
1 TATA-TATAT
81450443 TATAT-TA-
1 TATATATAT
81450450 TATATTATAT
1 TATA-TATAT
81450460 TATATA
1 TATATA
81450466 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.34
9 9 0.22
10 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:81450455 original size:12 final size:12
Alignment explanation
Indices: 81450410--81450465 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
81450400 TGTTAAAATA
*
81450410 TATATATTAAAT
1 TATATATTATAT
81450422 TAT-TATTATATT
1 TATATATTATA-T
81450434 ATAGTATATTATAT
1 -TA-TATATTATAT
81450448 TATATATTATAT
1 TATATATTATAT
81450460 TATATA
1 TATATA
81450466 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:81450839 original size:18 final size:19
Alignment explanation
Indices: 81450818--81450856 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
81450808 ATATATAGAT
81450818 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
81450836 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
81450855 AT
1 AT
81450857 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:81451207 original size:39 final size:39
Alignment explanation
Indices: 81451097--81451231 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
81451087 GACCTCGAGT
* * * *
81451097 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
81451138 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
81451176 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
81451215 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
81451232 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:81451375 original size:18 final size:19
Alignment explanation
Indices: 81451354--81451394 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
81451344 AATGAAATGA
81451354 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
81451372 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
81451391 GAAA
1 GAAA
81451395 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:81455852 original size:5 final size:5
Alignment explanation
Indices: 81455826--81455883 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
81455816 ATGTGTTAAA
* *
81455826 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
81455875 ATATT ATAT
1 ATATT ATAT
81455884 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 31 0.69
6 10 0.22
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:81455862 original size:10 final size:9
Alignment explanation
Indices: 81455827--81455884 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
81455817 TGTGTTAAAA
81455827 TATATATAT
1 TATATATAT
*
81455836 TAAAT-TAT
1 TATATATAT
81455844 TAT-TATAT
1 TATATATAT
81455852 TATAGTATAT
1 TATA-TATAT
81455862 TATAT-TA-
1 TATATATAT
81455869 TATATTATAT
1 TATA-TATAT
81455879 TATATA
1 TATATA
81455885 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.34
9 9 0.22
10 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:81455874 original size:12 final size:12
Alignment explanation
Indices: 81455829--81455884 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
81455819 TGTTAAAATA
*
81455829 TATATATTAAAT
1 TATATATTATAT
81455841 TAT-TATTATATT
1 TATATATTATA-T
81455853 ATAGTATATTATAT
1 -TA-TATATTATAT
81455867 TATATATTATAT
1 TATATATTATAT
81455879 TATATA
1 TATATA
81455885 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:81456270 original size:18 final size:19
Alignment explanation
Indices: 81456237--81456275 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
81456227 ATATATAGAT
81456237 ATATATATTGGATA-TTGA
1 ATATATATTGGATATTTGA
81456255 ATATATATT-GATTATTTGA
1 ATATATATTGGA-TATTTGA
81456274 AT
1 AT
81456276 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.11
18 11 0.58
19 6 0.32
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (19 bp):
ATATATATTGGATATTTGA
Found at i:81456626 original size:39 final size:39
Alignment explanation
Indices: 81456516--81456650 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
81456506 GACCTCGAGT
* * * *
81456516 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
81456557 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
81456595 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
81456634 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
81456651 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:81456794 original size:18 final size:19
Alignment explanation
Indices: 81456773--81456813 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
81456763 AATGAAATGA
81456773 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
81456791 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
81456810 GAAA
1 GAAA
81456814 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:81461436 original size:5 final size:5
Alignment explanation
Indices: 81461426--81461457 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
81461416 CAATTTGTGA
81461426 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
81461458 GAGCACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:81461451 original size:9 final size:9
Alignment explanation
Indices: 81461427--81461457 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
81461417 AATTTGTGAA
81461427 AAATAAAAT
1 AAATAAAAT
81461436 AAAATAAAAT
1 -AAATAAAAT
81461446 AAATAAAAT
1 AAATAAAAT
81461455 AAA
1 AAA
81461458 GAGCACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:81463178 original size:42 final size:42
Alignment explanation
Indices: 81463131--81463217 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
81463121 GCTAAATCTC
*
81463131 AAATTTTATTAAATCACAATAACTAACACTATATTTAAACCT
1 AAATTTTATTAAATCACAATAACTAACACCATATTTAAACCT
81463173 AAATTTTATTAAATCACAATAACTAACACCATATTTAAACCT
1 AAATTTTATTAAATCACAATAACTAACACCATATTTAAACCT
81463215 AAA
1 AAA
81463218 AAGTTATTCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.33
Consensus pattern (42 bp):
AAATTTTATTAAATCACAATAACTAACACCATATTTAAACCT
Found at i:81463633 original size:9 final size:9
Alignment explanation
Indices: 81463619--81463652 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
81463609 ATATGCCAAA
81463619 CACAATATT
1 CACAATATT
81463628 CACAATATT
1 CACAATATT
81463637 CACAATATT
1 CACAATATT
81463646 CACAATA
1 CACAATA
81463653 ATAACAAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (9 bp):
CACAATATT
Found at i:81463659 original size:18 final size:18
Alignment explanation
Indices: 81463620--81463659 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
81463610 TATGCCAAAC
* *
81463620 ACAATATTCACAATATTC
1 ACAATATTCACAATAATA
81463638 ACAATATTCACAATAATA
1 ACAATATTCACAATAATA
81463656 ACAA
1 ACAA
81463660 GATTTCTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.28
Consensus pattern (18 bp):
ACAATATTCACAATAATA
Found at i:81464247 original size:13 final size:13
Alignment explanation
Indices: 81464229--81464263 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
81464219 TAGTTTTTTC
*
81464229 AATTAAAATTATA
1 AATTAAAATAATA
81464242 AATTAAAATAATA
1 AATTAAAATAATA
81464255 ATATTAAAA
1 A-ATTAAAA
81464264 ACTATCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 13 0.65
14 7 0.35
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
AATTAAAATAATA
Found at i:81468907 original size:58 final size:57
Alignment explanation
Indices: 81468778--81468908 Score: 208
Period size: 57 Copynumber: 2.3 Consensus size: 57
81468768 AACTACACTA
81468778 GTTTCAAGTTAAAACATAATCTCATAGTGATCTCCGCCACACATCTTTATAGAAACG
1 GTTTCAAGTTAAAACATAATCTCATAGTGATCTCCGCCACACATCTTTATAGAAACG
* * * * *
81468835 GTCTCGAGTTAAAACATAGTCTCATAGTGATCTCTGCCACCACATCTTTATCGAAACG
1 GTTTCAAGTTAAAACATAATCTCATAGTGATCTCCGCCA-CACATCTTTATAGAAACG
81468893 GTTTCAAGTTAAAACA
1 GTTTCAAGTTAAAACA
81468909 CATCTTTATC
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
57 35 0.53
58 31 0.47
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (57 bp):
GTTTCAAGTTAAAACATAATCTCATAGTGATCTCCGCCACACATCTTTATAGAAACG
Found at i:81468916 original size:32 final size:32
Alignment explanation
Indices: 81468875--81469004 Score: 251
Period size: 32 Copynumber: 4.1 Consensus size: 32
81468865 TCTCTGCCAC
*
81468875 CACATCTTTATCGAAACGGTTTCAAGTTAAAA
1 CACATCTTTATCGAAACGGTTTCAATTTAAAA
81468907 CACATCTTTATCGAAACGGTTTCAATTTAAAA
1 CACATCTTTATCGAAACGGTTTCAATTTAAAA
81468939 CACATCTTTATCGAAACGGTTTCAATTTAAAA
1 CACATCTTTATCGAAACGGTTTCAATTTAAAA
81468971 CACATCTTTATCGAAACGGTTTCAATTTAAAA
1 CACATCTTTATCGAAACGGTTTCAATTTAAAA
81469003 CA
1 CA
81469005 TAATCTCATA
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 97 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (32 bp):
CACATCTTTATCGAAACGGTTTCAATTTAAAA
Found at i:81469064 original size:90 final size:90
Alignment explanation
Indices: 81468939--81469152 Score: 374
Period size: 90 Copynumber: 2.4 Consensus size: 90
81468929 CAATTTAAAA
* * *
81468939 CACATCTTTATCGAAACGGTTTCAATTTAAAACACATCTTTATCGAAACGGTTTCAATTTAAAAC
1 CACATCTTTATCGAAACAGTTTCAAGTTAAAACACATCTTTATCAAAACGGTTTCAATTTAAAAC
81469004 ATAATCTCATAGTGATCTCCGCCAC
66 ATAATCTCATAGTGATCTCCGCCAC
*
81469029 CACATCTTTATTGAAACAGTTTCAAGTTAAAACACATCTTTATCAAAACGGTTTCAATTTAAAAC
1 CACATCTTTATCGAAACAGTTTCAAGTTAAAACACATCTTTATCAAAACGGTTTCAATTTAAAAC
*
81469094 ATAGTCTCATAGTGATCTCCGCCAC
66 ATAATCTCATAGTGATCTCCGCCAC
*
81469119 CACATCTTTATCGAAACTGTTTCAAGTTAAAACA
1 CACATCTTTATCGAAACAGTTTCAAGTTAAAACA
81469153 TGGTCTCATA
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 117 1.00
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (90 bp):
CACATCTTTATCGAAACAGTTTCAAGTTAAAACACATCTTTATCAAAACGGTTTCAATTTAAAAC
ATAATCTCATAGTGATCTCCGCCAC
Found at i:81469070 original size:32 final size:32
Alignment explanation
Indices: 81469029--81469094 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
81469019 TCTCCGCCAC
**
81469029 CACATCTTTATTGAAACAGTTTCAAGTTAAAA
1 CACATCTTTATCAAAACAGTTTCAAGTTAAAA
* *
81469061 CACATCTTTATCAAAACGGTTTCAATTTAAAA
1 CACATCTTTATCAAAACAGTTTCAAGTTAAAA
81469093 CA
1 CA
81469095 TAGTCTCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (32 bp):
CACATCTTTATCAAAACAGTTTCAAGTTAAAA
Found at i:81469151 original size:58 final size:58
Alignment explanation
Indices: 81469061--81469479 Score: 541
Period size: 58 Copynumber: 7.4 Consensus size: 58
81469051 CAAGTTAAAA
*
81469061 CACATCTTTATCAAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
* * * *
81469119 CACATCTTTATCGAAACTGTTTCAAGTTAAAACATGGTCTCATAGTGATATCCGCCAC
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
*
81469177 CACATCTTTATTGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
* ** * * * * * ** *
81469235 CGCATCTTTAAAGAAACAGTTCCAAGTTAAAACATGGTTTCA-A-T--T-T---AAAA
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
* *
81469285 CACATCTTTATCGAAACAGTTTCAATTTAAAACATAGTCTCA-AGTGATCTCCACCAC
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
*
81469342 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCACAGTGATCTCCGCCAC
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
* * * *
81469400 CACATCTTTATCGAAACGGTTTCAGTTTAAAATATAGTCTCATTGTGATCTCTGCCAC
1 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
* *
81469458 CACATCTTTATCAAAATGGTTT
1 CACATCTTTATCGAAACGGTTT
81469480 TGACCAGACG
Statistics
Matches: 313, Mismatches: 40, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
50 37 0.12
51 1 0.00
53 2 0.01
54 2 0.01
56 1 0.00
57 43 0.14
58 227 0.73
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.32
Consensus pattern (58 bp):
CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCAC
Found at i:81469439 original size:223 final size:224
Alignment explanation
Indices: 81469047--81469467 Score: 700
Period size: 223 Copynumber: 1.9 Consensus size: 224
81469037 TATTGAAACA
*
81469047 GTTTCAAGTTAAAACACATCTTTATCAAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCT
1 GTTTCAAGTTAAAACACATCTTTATCAAAACAGTTTCAATTTAAAACATAGTCTCATAGTGATCT
* * * *
81469112 CCGCCACCACATCTTTATCGAAACTGTTTCAAGTTAAAACATGGTCTCATAGTGATATCCGCCAC
66 CCACCACCACATCTTTATCGAAACGGTTTCAAGTTAAAACATAGTCTCACAGTGATATCCGCCAC
* *
81469177 CACATCTTTATTGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCACCGCATCT
131 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCACCACATCT
81469242 TTAAAGAAACAGTTCCAAGTTAAAACATG
196 TTAAAGAAACAGTTCCAAGTTAAAACATG
* *
81469271 GTTTCAATTTAAAACACATCTTTATCGAAACAGTTTCAATTTAAAACATAGTCTCA-AGTGATCT
1 GTTTCAAGTTAAAACACATCTTTATCAAAACAGTTTCAATTTAAAACATAGTCTCATAGTGATCT
* *
81469335 CCACCACCACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCACAGTGATCTCCGCCAC
66 CCACCACCACATCTTTATCGAAACGGTTTCAAGTTAAAACATAGTCTCACAGTGATATCCGCCAC
* * * *
81469400 CACATCTTTATCGAAACGGTTTCAGTTTAAAATATAGTCTCATTGTGATCTCTGCCACCACATCT
131 CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCACCACATCT
81469465 TTA
196 TTA
81469468 TCAAAATGGT
Statistics
Matches: 182, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
223 129 0.71
224 53 0.29
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.32
Consensus pattern (224 bp):
GTTTCAAGTTAAAACACATCTTTATCAAAACAGTTTCAATTTAAAACATAGTCTCATAGTGATCT
CCACCACCACATCTTTATCGAAACGGTTTCAAGTTAAAACATAGTCTCACAGTGATATCCGCCAC
CACATCTTTATCGAAACGGTTTCAATTTAAAACATAGTCTCATAGTGATCTCCGCCACCACATCT
TTAAAGAAACAGTTCCAAGTTAAAACATG
Found at i:81473531 original size:15 final size:17
Alignment explanation
Indices: 81473511--81473549 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
81473501 GAATAGATAT
81473511 AAATATTA-A-TTAAAA
1 AAATATTATATTTAAAA
*
81473526 AAATATTATATTTGAAA
1 AAATATTATATTTAAAA
81473543 AAATATT
1 AAATATT
81473550 CCTAATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 1 0.05
17 12 0.57
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
AAATATTATATTTAAAA
Found at i:81479738 original size:17 final size:17
Alignment explanation
Indices: 81479699--81479738 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
81479689 AATAAATAAA
81479699 ATTTAATTTTTAAAAAT
1 ATTTAATTTTTAAAAAT
*
81479716 AGTTAATTTTTAAAAAT
1 ATTTAATTTTTAAAAAT
*
81479733 TTTTAA
1 ATTTAA
81479739 AAATATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
ATTTAATTTTTAAAAAT
Found at i:81479740 original size:9 final size:10
Alignment explanation
Indices: 81479720--81479753 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
81479710 AAAAATAGTT
81479720 AATTTTTAAA
1 AATTTTTAAA
81479730 AATTTTTAAAA
1 AATTTTT-AAA
81479741 ATATTTTTAAA
1 A-ATTTTTAAA
81479752 AA
1 AA
81479754 ACTCATGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 8 0.36
11 8 0.36
12 6 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
AATTTTTAAA
Found at i:81479748 original size:12 final size:11
Alignment explanation
Indices: 81479720--81479754 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 11
81479710 AAAAATAGTT
81479720 AATTTTT-AAA
1 AATTTTTAAAA
81479730 AATTTTTAAAA
1 AATTTTTAAAA
81479741 ATATTTTTAAAA
1 A-ATTTTTAAAA
81479753 AA
1 AA
81479755 CTCATGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.30
11 5 0.22
12 11 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTTTTAAAA
Found at i:81482460 original size:31 final size:31
Alignment explanation
Indices: 81482416--81482499 Score: 91
Period size: 31 Copynumber: 2.7 Consensus size: 31
81482406 TATGAAAATA
* * *
81482416 ATGTGTACAATTGA-CTCAAAATTAAAGTTTT
1 ATGTGTATAATTGAGC-CAAAATCAAAGTTTC
*
81482447 ATGTGTATGATTGAGCCAAAATCAAAGTTTC
1 ATGTGTATAATTGAGCCAAAATCAAAGTTTC
* *
81482478 ATGTGTATAGTTGTG-CAAAATC
1 ATGTGTATAATTGAGCCAAAATC
81482500 GCAACACGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
30 7 0.16
31 37 0.82
32 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (31 bp):
ATGTGTATAATTGAGCCAAAATCAAAGTTTC
Found at i:81487789 original size:41 final size:41
Alignment explanation
Indices: 81487732--81487852 Score: 233
Period size: 41 Copynumber: 2.9 Consensus size: 41
81487722 TCGCATTGCC
81487732 CGTTTTGGCCTTGGTTATATAATTTTACTATAATACGTTCT
1 CGTTTTGGCCTTGGTTATATAATTTTACTATAATACGTTCT
81487773 CGTTTTGGCCTTGGTTATATAATTTTACTATAATACGTTCT
1 CGTTTTGGCCTTGGTTATATAATTTTACTATAATACGTTCT
81487814 CGTTTTGGCCTTGGTTATATAATTTTTACTATAATACGT
1 CGTTTTGGCCTTGGTTATATAA-TTTTACTATAATACGT
81487853 ATCCGAGGGC
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
41 63 0.80
42 16 0.20
ACGTcount: A:0.22, C:0.14, G:0.15, T:0.49
Consensus pattern (41 bp):
CGTTTTGGCCTTGGTTATATAATTTTACTATAATACGTTCT
Found at i:81487992 original size:21 final size:22
Alignment explanation
Indices: 81487968--81488011 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
81487958 TCTACTTGAA
*
81487968 ATTTGTTTAATTAAAAT-AAAT
1 ATTTGATTAATTAAAATGAAAT
* *
81487989 ATTTGATTCATTAGAATGAAAT
1 ATTTGATTAATTAAAATGAAAT
81488011 A
1 A
81488012 CAAAAATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.43
Consensus pattern (22 bp):
ATTTGATTAATTAAAATGAAAT
Found at i:81488480 original size:21 final size:23
Alignment explanation
Indices: 81488446--81488491 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
81488436 TATTTTAAAA
81488446 ATATTTATATTAA-TTTCAATTTT
1 ATATTTATATTAATTTTC-ATTTT
81488469 ATATTTA-A-TAATTTTCATTTT
1 ATATTTATATTAATTTTCATTTT
81488490 AT
1 AT
81488492 TAAAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 10 0.45
22 5 0.23
23 7 0.32
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (23 bp):
ATATTTATATTAATTTTCATTTT
Found at i:81495700 original size:269 final size:270
Alignment explanation
Indices: 81495203--81495733 Score: 800
Period size: 269 Copynumber: 2.0 Consensus size: 270
81495193 TTATATATAT
* * *
81495203 AATATTTAATCCAGTCTCTAGATATAAATTTCATACATTATCGATCAATAATAATATATATCATC
1 AATATTTAATCCAGTCTCTAGATATAAATTCCATACATTATCAATCAATAATAATATATATCACC
* *
81495268 ATTAGATAAAATAAAAAATAATTTATAAGTATTAATAATATTATTTAAATTTAATTAAATAATAA
66 ATTAGATAAAATAAAAAATAATTTATAAATATTAATAATATTATTTAAATCTAATTAAATAATAA
* * * * *
81495333 TTAATTATAAATAAATGTTAAAAATTTGAAATTTAAATTTTAAAACCTTAGATTTAGGATCTGAA
131 TTAATTATAAATAAATGATAAAAATTTAAAATTTAAATTTTAAAACCTTAAATTTAGAATCTAAA
* *
81495398 ATATGAGAGTTATGAATGTTTAAATAAAATTATTAA-ATTTTTT-TATAGAAAAGAGAAGAAAAA
196 ATATGAGAATTATCAATGTTTAAATAAAATTATTAATATTTTTTATATAGAAAAGAGAAGAAAAA
81495461 AAATTGTTCA
261 AAATTGTTCA
* * * * *
81495471 AATATTTGATTCAG-CTCTGGATATAAATTCCATACATTATTAATTAATAATAATATATATATCA
1 AATATTTAATCCAGTCTCTAGATATAAATTCCATACATTATCAATCAATAAT-A-ATATATATCA
* *
81495535 CCATTAGATAAAATAAAAAATAGTTTATAAATATTAATAATATTATTTAAATCTAATTAAATGAT
64 CCATTAGATAAAATAAAAAATAATTTATAAATATTAATAATATTATTTAAATCTAATTAAATAAT
* *
81495600 AATTAATTATAAATAAATGATAAAATTTTAAAATTTAAATTTTAAATCCTTAAATTTAGAAT-TC
129 AATTAATTATAAATAAATGATAAAAATTTAAAATTTAAATTTTAAAACCTTAAATTTAGAATCT-
* *
81495664 AAAATTTGAGAATTATCAATGTTTAAATAAAATTATTAATTTTTTTTATATAGAAAAGAGAAGAA
193 AAAATATGAGAATTATCAATGTTTAAATAAAATTATTAATATTTTTTATATAGAAAAGAGAAGAA
81495729 AAAAA
258 AAAAA
81495734 CCATTAGGCA
Statistics
Matches: 235, Mismatches: 23, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
267 32 0.14
268 14 0.06
269 161 0.69
270 6 0.03
271 22 0.09
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (270 bp):
AATATTTAATCCAGTCTCTAGATATAAATTCCATACATTATCAATCAATAATAATATATATCACC
ATTAGATAAAATAAAAAATAATTTATAAATATTAATAATATTATTTAAATCTAATTAAATAATAA
TTAATTATAAATAAATGATAAAAATTTAAAATTTAAATTTTAAAACCTTAAATTTAGAATCTAAA
ATATGAGAATTATCAATGTTTAAATAAAATTATTAATATTTTTTATATAGAAAAGAGAAGAAAAA
AAATTGTTCA
Found at i:81496191 original size:28 final size:28
Alignment explanation
Indices: 81496150--81496210 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
81496140 TGGCCGGCCT
* *
81496150 TATATCATTTAGGCGGCAGAACAGACCA
1 TATATCATTCAGGCAGCAGAACAGACCA
* * *
81496178 TATATCATTCAGGCAGTAGATCCGACCA
1 TATATCATTCAGGCAGCAGAACAGACCA
81496206 TATAT
1 TATAT
81496211 AAAAGCTAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (28 bp):
TATATCATTCAGGCAGCAGAACAGACCA
Found at i:81499009 original size:93 final size:93
Alignment explanation
Indices: 81498895--81499065 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
81498885 ACCCATAAGT
** *
81498895 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
81498960 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * *
81498988 GAACTCGGACTCAACTTAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
81499053 CGAGTTCGGATGC
66 CGAGCTCGGATGC
81499066 TTAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:81499081 original size:46 final size:47
Alignment explanation
Indices: 81498887--81499062 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 47
81498877 TGTAACCCAC
*
81498887 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
* *
81498933 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-G-C-A-TTCGCAT
* * * * *
81498983 -C-TCA-CGAACTCGGACTCAACTTAACGAGTTC-GAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
*
81499026 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
81499063 TGCTTAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.58
47 25 0.23
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCATTCGCAT
Found at i:81502557 original size:25 final size:25
Alignment explanation
Indices: 81502529--81502579 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
81502519 ATATAAAGAG
81502529 AAAACATGTGAAATAAATCAACAAT
1 AAAACATGTGAAATAAATCAACAAT
81502554 AAAACATGTGAAATAAATCAACAAT
1 AAAACATGTGAAATAAATCAACAAT
81502579 A
1 A
81502580 TAGAGTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.61, C:0.12, G:0.08, T:0.20
Consensus pattern (25 bp):
AAAACATGTGAAATAAATCAACAAT
Found at i:81514905 original size:23 final size:24
Alignment explanation
Indices: 81514847--81514908 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 24
81514837 ATATTATTTT
81514847 TATATAAAA-ATAA-AT-TTAAAAA
1 TATATAAAATA-AATATATTAAAAA
*
81514869 TATAATAAATTAAATATATTAAAAA
1 TAT-ATAAAATAAATATATTAAAAA
81514894 TAT-TAAAATAAATAT
1 TATATAAAATAAATAT
81514909 TTCTCAACTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
22 3 0.09
23 18 0.53
24 3 0.09
25 10 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (24 bp):
TATATAAAATAAATATATTAAAAA
Found at i:81515046 original size:21 final size:18
Alignment explanation
Indices: 81515007--81515053 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
81514997 CTAATAATAA
*
81515007 AATTAACAATAAAATAAT
1 AATTAACAATAAAAAAAT
81515025 AATTATACAATATAACAAAAT
1 AATTA-ACAATA-AA-AAAAT
81515046 AA-TAACAA
1 AATTAACAA
81515054 AATCATAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.20
19 10 0.40
20 4 0.16
21 6 0.24
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (18 bp):
AATTAACAATAAAAAAAT
Found at i:81517765 original size:26 final size:27
Alignment explanation
Indices: 81517736--81517797 Score: 63
Period size: 32 Copynumber: 2.1 Consensus size: 27
81517726 CTGGGTTGGG
*
81517736 AAGGGA-ATGTATTATCTTTCTATTTA
1 AAGGGAGATATATTATCTTTCTATTTA
81517762 AAGGTTAAGGAGATATATTATCTTTCTATTTA
1 AA-G----GGAGATATATTATCTTTCTATTTA
81517794 AAGG
1 AAGG
81517798 TTAAGGAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 11
0.71 0.02 0.27
Matches are distributed among these distances:
26 2 0.07
27 2 0.07
31 4 0.14
32 21 0.72
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.42
Consensus pattern (27 bp):
AAGGGAGATATATTATCTTTCTATTTA
Found at i:81517786 original size:32 final size:32
Alignment explanation
Indices: 81517745--81517811 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
81517735 GAAGGGAATG
81517745 TATTATCTTTCTATTTAAAGGTTAAGGAGATA
1 TATTATCTTTCTATTTAAAGGTTAAGGAGATA
81517777 TATTATCTTTCTATTTAAAGGTTAAGGAGATA
1 TATTATCTTTCTATTTAAAGGTTAAGGAGATA
81517809 TAT
1 TAT
81517812 AATAAGAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.45
Consensus pattern (32 bp):
TATTATCTTTCTATTTAAAGGTTAAGGAGATA
Found at i:81519446 original size:29 final size:29
Alignment explanation
Indices: 81519391--81519447 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
81519381 CCTCATCAAA
* * *
81519391 TTAATTAATTTATTATTAAATAGATTAAT
1 TTAATTAATATATTATTAAAAAAATTAAT
81519420 TTAATTAATATATTATTAAAAAAATTAA
1 TTAATTAATATATTATTAAAAAAATTAA
81519448 ATACAGCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
TTAATTAATATATTATTAAAAAAATTAAT
Found at i:81521265 original size:2 final size:2
Alignment explanation
Indices: 81521258--81521291 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
81521248 CGAGGGCTTT
81521258 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81521292 TTGGTGGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:81521953 original size:22 final size:22
Alignment explanation
Indices: 81521926--81521977 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
81521916 TTAGTTGTTG
81521926 AGTTATTTAATGCAATTTTTGT
1 AGTTATTTAATGCAATTTTTGT
81521948 AGTTATTTAATGCAATTTTTGT
1 AGTTATTTAATGCAATTTTTGT
*
81521970 AGTGATTT
1 AGTTATTT
81521978 GTGATTGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.27, C:0.04, G:0.15, T:0.54
Consensus pattern (22 bp):
AGTTATTTAATGCAATTTTTGT
Found at i:81527014 original size:45 final size:45
Alignment explanation
Indices: 81526936--81527030 Score: 111
Period size: 45 Copynumber: 2.1 Consensus size: 45
81526926 TTGTTGATGA
* * * * * *
81526936 ATTTCGTTAAATTAAATTTTATAATATTGTAAATTAGTTCGAGCT
1 ATTTTGTTAAATCAAATTTTATAATAATATAAATTAATTCAAGCT
*
81526981 GTTTTGTTAAATCAAA-TTTATAATAAATATAAATTAATTCAAGCT
1 ATTTTGTTAAATCAAATTTTATAAT-AATATAAATTAATTCAAGCT
81527026 ATTTT
1 ATTTT
81527031 AAGATAATTG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 8 0.20
45 33 0.80
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.46
Consensus pattern (45 bp):
ATTTTGTTAAATCAAATTTTATAATAATATAAATTAATTCAAGCT
Found at i:81528529 original size:31 final size:30
Alignment explanation
Indices: 81528486--81528559 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 30
81528476 TCTTTAAATG
81528486 TATAAATTGAATCAAAATCAAAATTTTATA
1 TATAAATTGAATCAAAATCAAAATTTTATA
* ** * *
81528516 TATACATTGGAATCGCAATCAAAGTTTTATT
1 TATAAATT-GAATCAAAATCAAAATTTTATA
*
81528547 TATATATTTGAAT
1 TATA-AATTGAAT
81528560 TATGATCAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
30 7 0.20
31 26 0.74
32 2 0.06
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (30 bp):
TATAAATTGAATCAAAATCAAAATTTTATA
Found at i:81528618 original size:27 final size:30
Alignment explanation
Indices: 81528564--81528618 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
81528554 TTGAATTATG
* *
81528564 ATCAAAGTTTCATGTGTATAATTGCACAAA
1 ATCAAAGTTTCATGTATATAAATGCACAAA
81528594 ATCAAAGTTT-ATGTAT-TAAAT-CACA
1 ATCAAAGTTTCATGTATATAAATGCACA
81528619 CATTAAATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 4 0.17
28 4 0.17
29 5 0.22
30 10 0.43
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.35
Consensus pattern (30 bp):
ATCAAAGTTTCATGTATATAAATGCACAAA
Found at i:81529104 original size:28 final size:28
Alignment explanation
Indices: 81529059--81529115 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
81529049 ACCTAATAAT
* * * *
81529059 AGAGGTTTTGATGTAAAATTATATTTTA
1 AGAGGGTTTGACGAAAAATTACATTTTA
81529087 AGAGGGTTTGACGAAAAATTACATTTTA
1 AGAGGGTTTGACGAAAAATTACATTTTA
81529115 A
1 A
81529116 AAATTCAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39
Consensus pattern (28 bp):
AGAGGGTTTGACGAAAAATTACATTTTA
Found at i:81536490 original size:8 final size:8
Alignment explanation
Indices: 81536477--81536511 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
81536467 GAAACCAATT
81536477 TTTATATA
1 TTTATATA
81536485 TTTATATA
1 TTTATATA
81536493 TTTATATA
1 TTTATATA
*
81536501 TTAATA-A
1 TTTATATA
81536508 TTTA
1 TTTA
81536512 AATGTATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 4 0.16
8 21 0.84
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
TTTATATA
Found at i:81536566 original size:36 final size:36
Alignment explanation
Indices: 81536525--81536596 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
81536515 GTATAGAATG
81536525 ATTCATTTGGTGTTTTAATTTTATAAAAAAATTGTT
1 ATTCATTTGGTGTTTTAATTTTATAAAAAAATTGTT
81536561 ATTCATTTGGTGTTTTAATTTTATAAAAAAATTGTT
1 ATTCATTTGGTGTTTTAATTTTATAAAAAAATTGTT
81536597 TTTTATTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.03, G:0.11, T:0.53
Consensus pattern (36 bp):
ATTCATTTGGTGTTTTAATTTTATAAAAAAATTGTT
Found at i:81540561 original size:20 final size:21
Alignment explanation
Indices: 81540522--81540562 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
81540512 TTATTAGGTA
81540522 TAATAAGATAAAATAAAATTT
1 TAATAAGATAAAATAAAATTT
81540543 TAATAA-ATATAAA-AAAATTT
1 TAATAAGATA-AAATAAAATTT
81540563 ATGTTGTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
TAATAAGATAAAATAAAATTT
Found at i:81541222 original size:43 final size:43
Alignment explanation
Indices: 81541051--81541220 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 43
81541041 AAACGCTGCA
* * *
81541051 AAAAACGCCGCTAAAGACCATGACTTTTAGCGGTGTTCTTTTTTCC
1 AAAAACGCCACTAAAGACCATGACCTTTAGCGGCG--C-TTTTTCC
* *
81541097 --AAATGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTTCC
* * * * *
81541138 ACAAACGCCACTAAAGACCATGATCTTTAGCGTCGCATTTTCT
1 AAAAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTTCC
* * *
81541181 AAAAACGCCACTATATATCA-GACCTTTAGCGGCGCTTTTT
1 AAAAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTT
81541221 TCACAAATGC
Statistics
Matches: 104, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
41 6 0.06
42 18 0.17
43 51 0.49
44 29 0.28
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (43 bp):
AAAAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTTCC
Found at i:81556470 original size:92 final size:92
Alignment explanation
Indices: 81556314--81556482 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
81556304 GCCCATAAGT
*
81556314 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
81556379 -AGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
81556405 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
81556470 CGAGTTCGGATGC
65 CGAGCTCGGATGC
81556483 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 27 0.37
92 36 0.49
93 10 0.14
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:81556479 original size:46 final size:45
Alignment explanation
Indices: 81556306--81556478 Score: 208
Period size: 46 Copynumber: 3.8 Consensus size: 45
81556296 TGTAACCCGC
*
81556306 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
81556351 CCATAAGTGAACTCGGACTCAACTCAAC-AGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
81556396 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
81556443 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
81556479 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 7 0.06
45 33 0.31
46 48 0.44
47 11 0.10
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:81556498 original size:46 final size:46
Alignment explanation
Indices: 81556311--81556498 Score: 135
Period size: 46 Copynumber: 4.1 Consensus size: 46
81556301 CCCGCCCATA
* * *
81556311 AGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCC-T
81556355 AAGTGAACTCGGACTCAACTCAAC-AGCTCGGATGC-CTAGTTA-CATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACCATC-CT
* * * * * *
81556404 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCTCAACCATCCT
*
81556448 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
81556494 AGTGA
1 AGTGA
81556499 CATGTCACTT
Statistics
Matches: 114, Mismatches: 12, Indels: 33
0.72 0.08 0.21
Matches are distributed among these distances:
44 17 0.15
45 24 0.21
46 53 0.46
47 9 0.08
49 9 0.08
50 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACCATCCT
Found at i:81561405 original size:93 final size:93
Alignment explanation
Indices: 81561293--81561463 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
81561283 GCCCATAAGT
* *
81561293 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81561358 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
81561386 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
81561451 CGAGTTCGGATGC
66 CGAGCTCGGATGC
81561464 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:81561460 original size:46 final size:46
Alignment explanation
Indices: 81561285--81561460 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
81561275 TGTAACCCGC
* *
81561285 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
81561331 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
81561377 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
81561424 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
81561461 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:81565187 original size:6 final size:7
Alignment explanation
Indices: 81565132--81565188 Score: 69
Period size: 7 Copynumber: 8.0 Consensus size: 7
81565122 ATATGGACTA
*
81565132 AAATATT
1 AAATTTT
*
81565139 AAATATT
1 AAATTTT
81565146 AAATATTT
1 AAAT-TTT
*
81565154 AAGTTTT
1 AAATTTT
81565161 AAATTTT
1 AAATTTT
81565168 AAATTTT
1 AAATTTT
*
81565175 AAAATTT
1 AAATTTT
81565182 AAATTTT
1 AAATTTT
81565189 TAAAATTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
7 39 0.89
8 5 0.11
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (7 bp):
AAATTTT
Found at i:81565189 original size:15 final size:14
Alignment explanation
Indices: 81565130--81565196 Score: 80
Period size: 15 Copynumber: 4.6 Consensus size: 14
81565120 AAATATGGAC
*
81565130 TAAAATATTAAATAT
1 TAAAAT-TTAAATTT
*
81565145 TAAATATTTAAGTTT
1 TAAA-ATTTAAATTT
*
81565160 TAAATTTTAAATTT
1 TAAAATTTAAATTT
81565174 TAAAATTTAAATTTT
1 TAAAATTTAAA-TTT
81565189 TAAAATTT
1 TAAAATTT
81565197 TTTGAAGATT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
14 18 0.40
15 25 0.56
16 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (14 bp):
TAAAATTTAAATTT
Found at i:81565223 original size:8 final size:8
Alignment explanation
Indices: 81565144--81565223 Score: 60
Period size: 7 Copynumber: 9.9 Consensus size: 8
81565134 ATATTAAATA
*
81565144 TTAAATAT
1 TTAAATTT
*
81565152 TT-AAGTT
1 TTAAATTT
81565159 TTAAA-TT
1 TTAAATTT
81565166 TTAAA-TT
1 TTAAATTT
*
81565173 TTAAA-AT
1 TTAAATTT
81565180 TTAAATTT
1 TTAAATTT
81565188 TTAAAATTTT
1 TT-AAA-TTT
81565198 TTGAAGATTT
1 TT-AA-ATTT
81565208 TTATAATTT
1 TTA-AATTT
81565217 TTAAATT
1 TTAAATT
81565224 ATCATATAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
7 25 0.41
8 11 0.18
9 11 0.18
10 13 0.21
11 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (8 bp):
TTAAATTT
Found at i:81566125 original size:17 final size:18
Alignment explanation
Indices: 81566099--81566133 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
81566089 GGGGTTATAG
*
81566099 TTTAGTGTTTA-GGGTTT
1 TTTAGGGTTTATGGGTTT
81566116 TTTAGGGTTTATGGGTTT
1 TTTAGGGTTTATGGGTTT
81566134 AGTATTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.11, C:0.00, G:0.31, T:0.57
Consensus pattern (18 bp):
TTTAGGGTTTATGGGTTT
Found at i:81568925 original size:46 final size:46
Alignment explanation
Indices: 81568858--81569156 Score: 373
Period size: 46 Copynumber: 6.7 Consensus size: 46
81568848 GCAACCTGTA
*
81568858 TGTAAGACCATGGTTGAAAGATACCACGGCAACCTGATATGAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
81568904 TGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---TG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
*
81568942 TGTAAGACCATGGTTGAAAGATACCACGGCAACCTGATATGAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
* *
81568988 TGTAAGACCATGGTTGAAAGATACCATGGCAACTTGATATGAGATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
* * * *
81569034 TGTAAGAGCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
** * * *
81569080 AATAAGACTATGGTTGAAAGATACCATGGCAACATGACA-GAAAATG
1 TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATG
* * * *
81569126 AGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTAAGACCATGGTTGAAAGATACCATGGCA
81569157 TCACGTCAAA
Statistics
Matches: 223, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
38 35 0.16
41 2 0.01
43 2 0.01
45 1 0.00
46 183 0.82
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
TGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATG
Found at i:81568948 original size:84 final size:84
Alignment explanation
Indices: 81568807--81569112 Score: 450
Period size: 84 Copynumber: 3.5 Consensus size: 84
81568797 AGTGTGCTCT
*
81568807 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTATGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
81568872 TGAAAGATACCACGGCAAC
66 TGAAAGATACCACGGCAAC
81568891 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
81568956 TGAAAGATACCACGGCAAC
66 TGAAAGATACCACGGCAAC
*
81568975 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC-----CT--G-TGTGTAAG
* *
81569040 AGCATGGTTGAAAGATACCATGGCAAC
58 ACCATGGTTGAAAGATACCACGGCAAC
* * * ** *
81569067 GTGACATGAAAAGAATAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
81569113 ATGACAGAAA
Statistics
Matches: 204, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
84 129 0.63
89 1 0.00
91 1 0.00
92 73 0.36
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCACGGCAAC
Found at i:81569462 original size:23 final size:25
Alignment explanation
Indices: 81569417--81569463 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
81569407 AATAAATATA
*
81569417 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
81569442 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
81569464 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:81569979 original size:41 final size:41
Alignment explanation
Indices: 81569930--81570023 Score: 161
Period size: 41 Copynumber: 2.3 Consensus size: 41
81569920 ACCAGAGCAC
81569930 TAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGTTTT
1 TAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGTTTT
* * *
81569971 TAGTGGCGTTTTACTGAAAGCGCTGCTAATGCTTTGGTTTT
1 TAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGTTTT
81570012 TAGCGGCGTTTT
1 TAGCGGCGTTTT
81570024 TGGTAAAACG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.16, C:0.18, G:0.28, T:0.38
Consensus pattern (41 bp):
TAGCGGCGTTTTACTGAAAGCGCCGCTAATGCTCTGGTTTT
Found at i:81570451 original size:2 final size:2
Alignment explanation
Indices: 81570444--81570484 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
81570434 TTATAAGTGT
81570444 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81570485 TAAGAAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:81572797 original size:13 final size:13
Alignment explanation
Indices: 81572781--81572805 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81572771 AAACTTTTTC
81572781 ATAAATAAATTTA
1 ATAAATAAATTTA
81572794 ATAAATAAATTT
1 ATAAATAAATTT
81572806 TCAAGTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAAATAAATTTA
Found at i:81576213 original size:13 final size:13
Alignment explanation
Indices: 81576195--81576221 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81576185 TGGAACGTTA
81576195 ATTTAAATGGTTG
1 ATTTAAATGGTTG
81576208 ATTTAAATGGTTG
1 ATTTAAATGGTTG
81576221 A
1 A
81576222 ATTTTATCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (13 bp):
ATTTAAATGGTTG
Found at i:81576374 original size:29 final size:30
Alignment explanation
Indices: 81576314--81576407 Score: 86
Period size: 30 Copynumber: 3.2 Consensus size: 30
81576304 CAATTTTTTA
* *
81576314 AAAAATTCTTAACAATAATTCTAAAAAATT
1 AAAAATTCTTAAAAATAATTATAAAAAATT
***
81576344 AAAAATTCTTAAAAATAA-TATAACTTATT
1 AAAAATTCTTAAAAATAATTATAAAAAATT
* * *
81576373 AAAAATTATGTTAAAAT-ATTTTAAAAAA-T
1 AAAAATTCT-TAAAAATAATTATAAAAAATT
81576402 AAAAAT
1 AAAAAT
81576408 ATAAATAAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
29 23 0.45
30 28 0.55
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.35
Consensus pattern (30 bp):
AAAAATTCTTAAAAATAATTATAAAAAATT
Found at i:81578708 original size:75 final size:74
Alignment explanation
Indices: 81578621--81578791 Score: 208
Period size: 75 Copynumber: 2.4 Consensus size: 74
81578611 GTTTTCCTCA
* ** * * ***
81578621 TTGAAATACCATACCTTCATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTTTTAACT
1 TTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAACT
81578685 CAGTATGGAT
65 CAGTATGGAT
*
81578695 TTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAACT
1 TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
81578760 CAGTATGGA-
65 CAGTATGGAT
81578769 -TG--ATACCATACCTACATTTCACA
1 TTGAAATACCATACCTACATTTCACA
81578792 CTTTTCCATG
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 7 0.08
75 56 0.65
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (74 bp):
TTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACTC
AGTATGGAT
Found at i:81578788 original size:35 final size:35
Alignment explanation
Indices: 81578625--81578791 Score: 183
Period size: 35 Copynumber: 4.6 Consensus size: 35
81578615 TCCTCATTGA
* ** *
81578625 AATACCATACCTTCATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* ***
81578660 AATGCCATACCTACATTTTTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
81578700 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
81578735 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
81578770 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
81578792 CTTTTCCATG
Statistics
Matches: 116, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
35 87 0.75
39 3 0.03
40 26 0.22
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:81580633 original size:2 final size:2
Alignment explanation
Indices: 81580626--81580669 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
81580616 AGTGCCAAAA
81580626 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81580668 AT
1 AT
81580670 CATTTAGACC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81584055 original size:9 final size:9
Alignment explanation
Indices: 81584043--81584095 Score: 54
Period size: 10 Copynumber: 5.7 Consensus size: 9
81584033 TTTTAGCATT
81584043 TTTTTAATA
1 TTTTTAATA
81584052 TTTTTAATA
1 TTTTTAATA
*
81584061 TATTTTGATAA
1 T-TTTTAAT-A
*
81584072 TTTTTATTTA
1 TTTTTA-ATA
81584082 TTTTTAA-A
1 TTTTTAATA
81584090 TTTTTA
1 TTTTTA
81584096 GAGCTATTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
8 7 0.19
9 10 0.27
10 17 0.46
11 3 0.08
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (9 bp):
TTTTTAATA
Found at i:81585297 original size:27 final size:27
Alignment explanation
Indices: 81585263--81585317 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
81585253 TATTTAAGTT
81585263 TAACTATATATTATATAAATATTAACA
1 TAACTATATATTATATAAATATTAACA
81585290 TAACTATATATTATATAAATATTAACA
1 TAACTATATATTATATAAATATTAACA
81585317 T
1 T
81585318 TACAAGGCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (27 bp):
TAACTATATATTATATAAATATTAACA
Done.