Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 283 of 292
Found at i:81586137 original size:16 final size:17
Alignment explanation
Indices: 81586105--81586137 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
81586095 AACATAGCAA
*
81586105 ATAATATGTTATTATTG
1 ATAATATGTTATCATTG
81586122 ATAATAT-TTATCATTG
1 ATAATATGTTATCATTG
81586138 CAACATCGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (17 bp):
ATAATATGTTATCATTG
Found at i:81588266 original size:19 final size:20
Alignment explanation
Indices: 81588229--81588266 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
81588219 ATTGCTAAGT
*
81588229 TGTAAAATGAGTTGTAAATG
1 TGTAAAATGAGTTGAAAATG
81588249 TGTAAAAT-AGTTGAAAAT
1 TGTAAAATGAGTTGAAAAT
81588267 ATGAGTTGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (20 bp):
TGTAAAATGAGTTGAAAATG
Found at i:81588878 original size:46 final size:46
Alignment explanation
Indices: 81588822--81588997 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
81588812 TGGTTGAGCA
*
81588822 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
** * * *
81588868 TTTGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
81588913 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81588961 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81588998 GCCGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81588978 original size:93 final size:93
Alignment explanation
Indices: 81588819--81588989 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
81588809 GGATGGTTGA
* ***
81588819 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
*
81588884 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* *
81588912 GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
81588977 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
81588990 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:81594210 original size:21 final size:21
Alignment explanation
Indices: 81594184--81594224 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81594174 ATCTGCTCAA
* *
81594184 ACTCTACCTGTTTTGGAGTAC
1 ACTCTACCTGCTGTGGAGTAC
81594205 ACTCTACCTGCTGTGGAGTA
1 ACTCTACCTGCTGTGGAGTA
81594225 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (21 bp):
ACTCTACCTGCTGTGGAGTAC
Found at i:81598361 original size:142 final size:142
Alignment explanation
Indices: 81598179--81598462 Score: 568
Period size: 142 Copynumber: 2.0 Consensus size: 142
81598169 ACCCTAAAAT
81598179 TTTTAATAGGTTAAAATATACTTAATGTCCTTGTACTTTTTGCATATTTGAAATTTAGCCCATTT
1 TTTTAATAGGTTAAAATATACTTAATGTCCTTGTACTTTTTGCATATTTGAAATTTAGCCCATTT
81598244 TACTTTTTAGATTAAAAAGTGTAAGTGTAATTGTTGAACCAATTAAAATTCTTCTATTAAATTCA
66 TACTTTTTAGATTAAAAAGTGTAAGTGTAATTGTTGAACCAATTAAAATTCTTCTATTAAATTCA
81598309 AATTCATTACAA
131 AATTCATTACAA
81598321 TTTTAATAGGTTAAAATATACTTAATGTCCTTGTACTTTTTGCATATTTGAAATTTAGCCCATTT
1 TTTTAATAGGTTAAAATATACTTAATGTCCTTGTACTTTTTGCATATTTGAAATTTAGCCCATTT
81598386 TACTTTTTAGATTAAAAAGTGTAAGTGTAATTGTTGAACCAATTAAAATTCTTCTATTAAATTCA
66 TACTTTTTAGATTAAAAAGTGTAAGTGTAATTGTTGAACCAATTAAAATTCTTCTATTAAATTCA
81598451 AATTCATTACAA
131 AATTCATTACAA
81598463 AGTCTTTTTT
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 142 1.00
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (142 bp):
TTTTAATAGGTTAAAATATACTTAATGTCCTTGTACTTTTTGCATATTTGAAATTTAGCCCATTT
TACTTTTTAGATTAAAAAGTGTAAGTGTAATTGTTGAACCAATTAAAATTCTTCTATTAAATTCA
AATTCATTACAA
Found at i:81604657 original size:131 final size:130
Alignment explanation
Indices: 81604373--81604854 Score: 355
Period size: 131 Copynumber: 3.7 Consensus size: 130
81604363 TAGAAAATAC
* * * * * * * *
81604373 GAGTGAAATTCTGAAGGGATCTTCGATTGTTTTGAGCGAATGA-AAAAGCGCAACCCAGCACGAT
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAAA-CACAACCCAACACGAT
* ** * * * * * * *
81604437 AGGGCTCGATT-CTGAAATCGCCAAACATCGAACATCGCCTTCGTTTTGAACGGTTTTTAATAA-
65 AGGGCACGATTCCACAAATTGCCAAACACCGCATATCACCTTCG-TTT-AAAGGATTTTAA-AAG
81604500 ACAT
127 ACAT
* *** * * * * *
81604504 GAATGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAAACACAACCCAGCATGATA
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAAACACAACCCAACACGATA
* * * *
81604569 GGGCATGATTCC-CAAATTGTCAAACACCG-AGTATTACCTTCGTTTTAAAGGATTTCTAGAAGA
66 GGGCACGATTCCACAAATTGCCAAACACCGCA-TATCACCTTCG-TTTAAAGGATTT-TAAAAGA
*
81604632 CCT
128 CAT
* * * *** *
81604635 GAGTGAAATTTTGAAGGGATATTTGATTATTTTAAACAAGCGAGAAATTGCAACCCAACACGTTA
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAAACACAACCCAACACGATA
* * * * * * *
81604700 GGGCACGATTCCACGAATTGCCAAATATCGCATATCGCCTTCGTTTAAGGGATTTTAAAATATAT
66 GGGCACGATTCCACAAATTGCCAAACACCGCATATCACCTTCGTTTAAAGGATTTTAAAAGACAT
* * * *** *
81604765 GAGTGAAATTTTGAAGTGATATTCGATTATTTTGAGC-AACTGCGAAATTGCAACCCAACACGTT
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAAC-GAGAAAACACAACCCAACACGAT
* *
81604829 AGGGCACGATTCCGCGAATTGCCAAA
65 AGGGCACGATTCCACAAATTGCCAAA
81604855 TATCAAATCT
Statistics
Matches: 284, Mismatches: 59, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
129 2 0.01
130 96 0.34
131 158 0.56
132 27 0.10
133 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (130 bp):
GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAAACACAACCCAACACGATA
GGGCACGATTCCACAAATTGCCAAACACCGCATATCACCTTCGTTTAAAGGATTTTAAAAGACAT
Found at i:81604872 original size:130 final size:130
Alignment explanation
Indices: 81604634--81604875 Score: 378
Period size: 130 Copynumber: 1.9 Consensus size: 130
81604624 CTAGAAGACC
*
81604634 TGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAACAAGCGAGAAATTGCAACCCAACACGTT
1 TGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAACAAGCGAGAAATTGCAACCCAACACGTT
**
81604699 AGGGCACGATTCCACGAATTGCCAAATATCGCATATCGCCTTCGTTTAAGGGATTTTAAAATATA
66 AGGGCACGATTCCACGAATTGCCAAATATCAAATATCGCCTTCGTTTAAGGGATTTTAAAATATA
* * * *
81604764 TGAGTGAAATTTTGAAGTGATATTCGATTATTTTGAGCAA-CTGCGAAATTGCAACCCAACACGT
1 TGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAACAAGC-GAGAAATTGCAACCCAACACGT
* * *
81604828 TAGGGCACGATTCCGCGAATTGCCAAATATCAAATCTCGTCTTCGTTT
65 TAGGGCACGATTCCACGAATTGCCAAATATCAAATATCGCCTTCGTTT
81604876 TAAAGAATTT
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
129 1 0.01
130 100 0.99
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (130 bp):
TGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAACAAGCGAGAAATTGCAACCCAACACGTT
AGGGCACGATTCCACGAATTGCCAAATATCAAATATCGCCTTCGTTTAAGGGATTTTAAAATATA
Found at i:81605417 original size:16 final size:16
Alignment explanation
Indices: 81605396--81605431 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
81605386 AAGTTAACAG
81605396 AATATATGATA-ATAAA
1 AATATATGATACA-AAA
81605412 AATATATGATACAAAA
1 AATATATGATACAAAA
81605428 AATA
1 AATA
81605432 CATAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 18 0.95
17 1 0.05
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (16 bp):
AATATATGATACAAAA
Found at i:81605427 original size:14 final size:15
Alignment explanation
Indices: 81605390--81605445 Score: 53
Period size: 14 Copynumber: 3.8 Consensus size: 15
81605380 ATTTAAAAGT
*
81605390 TAACAGAATATATGA
1 TAACAAAATATATGA
*
81605405 TAATAAAAATATATGA
1 TAA-CAAAATATATGA
* *
81605421 T-ACAAAAAATA-CA
1 TAACAAAATATATGA
81605434 TAACAAAATATA
1 TAACAAAATATA
81605446 ATGCCCCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
13 2 0.06
14 16 0.48
15 4 0.12
16 11 0.33
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (15 bp):
TAACAAAATATATGA
Found at i:81607673 original size:44 final size:44
Alignment explanation
Indices: 81607610--81608502 Score: 1180
Period size: 44 Copynumber: 20.2 Consensus size: 44
81607600 CGGGAACACC
* * *
81607610 AATCTGTTATTTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81607654 AATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81607698 AATCTGCTATCTTCGATTTGCCCTCTGACAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81607742 AATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACACCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81607786 AGTCTGCTATATTCGATCTGCTCCCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* ** * * *
81607830 AATCTGTTATCTTCGATCTGCTCCAAATCTGTTATCTTC-GATCTG-CTCCA
1 AATCTGCTATCTTCGATCTGCT-C---TCTGCCA-ATACAGA---GACGCCA
* *
81607880 AATCTGCTATCTTCGATTTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
81607924 AATCTGCTATCCTT-AATCTGCTCTCCGCCAATACAGAGATGTCA
1 AATCTGCTAT-CTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81607968 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
81608012 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81608056 AATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81608100 AATCTGCTATCTTCGATCTGCTCTCCGCTAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81608144 AATCTGCTATCTTCGATTTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81608188 AATCTGCTATCTTCGATCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81608232 AATCTGCTATCTTTGATTTGCTCTCTGCCAATACAGAGACGCTA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
81608276 AATCTGCTATCTTCAATCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81608320 AATCTGCTATCTTTGATTTGCTCTCTGCCAATACAGAGACGTCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81608364 AATCTGCTATCTTCGATCTGCCCCCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * * *
81608408 AATCTGTTATCTTCGATCTCCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
81608452 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
81608496 AATCTGC
1 AATCTGC
81608503 AGGATTTGCC
Statistics
Matches: 745, Mismatches: 92, Indels: 24
0.87 0.11 0.03
Matches are distributed among these distances:
43 4 0.01
44 695 0.93
45 6 0.01
46 6 0.01
48 6 0.01
49 3 0.00
50 24 0.03
51 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.29
Consensus pattern (44 bp):
AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
Found at i:81607861 original size:25 final size:25
Alignment explanation
Indices: 81607827--81607902 Score: 134
Period size: 25 Copynumber: 3.0 Consensus size: 25
81607817 TACAGAGACG
81607827 CCAAATCTGTTATCTTCGATCTGCT
1 CCAAATCTGTTATCTTCGATCTGCT
81607852 CCAAATCTGTTATCTTCGATCTGCT
1 CCAAATCTGTTATCTTCGATCTGCT
* *
81607877 CCAAATCTGCTATCTTCGATTTGCT
1 CCAAATCTGTTATCTTCGATCTGCT
81607902 C
1 C
81607903 TCCGCCAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.20, C:0.29, G:0.12, T:0.39
Consensus pattern (25 bp):
CCAAATCTGTTATCTTCGATCTGCT
Found at i:81620324 original size:131 final size:129
Alignment explanation
Indices: 81620008--81620489 Score: 362
Period size: 131 Copynumber: 3.7 Consensus size: 129
81619998 TAGAAAATAC
* * * * * * * ** * *
81620008 GAGTGAAATTCTGAAGGGATCTTCGATTGTTTTGAGCGAATGAAAAAGCGCAACCCAGCACGATA
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTA
* * * * * * * * * *
81620073 GGGCTCGATT-CTGAAATCGCCAAACATCGAACATCGCCTTCGTTTTGAACGGTTTTTAATAA-A
66 GGGCACGATTCCCG-AATTGCCAAACACCGCATATCACCTTCG-TTT-AAAGGATTTCAA-AAGA
81620136 CAT
127 CAT
* *** * * * *** * * *
81620139 GAATGAAAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAAACACAACCCAGCATGATA
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTA
* * * * *
81620204 GGGCATGATTCCCGAATTGTCAAACACCG-AGTATTACCTTCGTTTTAAATGATTTCTAGAAGAC
66 GGGCACGATTCCCGAATTGCCAAACACCGCA-TATCACCTTCG-TTTAAAGGATTTC-AAAAGAC
*
81620268 CT
128 AT
* *
81620270 GAGTGAAATTTTGAAGGGATATTTGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTA
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTA
* * * * * * *
81620335 GGGCACAATTTCACGAATTGCCAAATATCGCATATCGCCTTCGTTTAAGGGATTTCAAAAGATAT
66 GGGCACGA-TTCCCGAATTGCCAAACACCGCATATCACCTTCGTTTAAAGGATTTCAAAAGACAT
** *
81620400 GAGTGAAATTTTGAAATGATATTCGATTATTTTGAGC-AACTGCA-AAATTGCAACCCAACACGT
1 GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAAC-G-AGAAATTGCAACCCAACACGT
81620463 TAGGGCACGATTCCGCGAATTGCCAAA
64 TAGGGCACGATTCC-CGAATTGCCAAA
81620490 TATCAAATCT
Statistics
Matches: 279, Mismatches: 63, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
129 6 0.02
130 88 0.32
131 156 0.56
132 28 0.10
133 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (129 bp):
GAGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACACGTTA
GGGCACGATTCCCGAATTGCCAAACACCGCATATCACCTTCGTTTAAAGGATTTCAAAAGACAT
Found at i:81620507 original size:130 final size:130
Alignment explanation
Indices: 81620151--81620510 Score: 348
Period size: 130 Copynumber: 2.8 Consensus size: 130
81620141 ATGAAAACCT
* * *** * * * **
81620151 AAAGGAATATTCGATTGTTTTGAACAAACGAGAAAACACAACCCAGCATGATAGGGCATGATTCC
1 AAAGG-ATATTCGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACAATTCC
* * * * * ** ** * **
81620216 -CGAATTGTCAAACACCGAGTATTACCTTCGTTTTAAATGATTTCTAGAAGACCTGAGTGAAATT
65 ACGAATTGCCAAATATCAAATATCGCCTTCG-TTTAAGGGATTTC-AAAAGATATGAGTGAAATT
81620280 TTG
128 TTG
* * *
81620283 AAGGGATATTTGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACAATTTCA
1 AAAGGATATTCGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACAATTCCA
**
81620348 CGAATTGCCAAATATCGCATATCGCCTTCGTTTAAGGGATTTCAAAAGATATGAGTGAAATTTTG
66 CGAATTGCCAAATATCAAATATCGCCTTCGTTTAAGGGATTTCAAAAGATATGAGTGAAATTTTG
* * * *
81620413 AAATGATATTCGATTATTTTGAGC-AACTGCA-AAATTGCAACCCAACACGTTAGGGCACGATTC
1 AAAGGATATTCGATTATTTTAAACAAAC-G-AGAAATTGCAACCCAACACGTTAGGGCACAATTC
* * *
81620476 CGCGAATTGCCAAATATCAAATCTCGTCTTCGTTT
64 CACGAATTGCCAAATATCAAATATCGCCTTCGTTT
81620511 TAAAGAATTT
Statistics
Matches: 188, Mismatches: 37, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
129 3 0.02
130 99 0.53
131 59 0.31
132 27 0.14
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (130 bp):
AAAGGATATTCGATTATTTTAAACAAACGAGAAATTGCAACCCAACACGTTAGGGCACAATTCCA
CGAATTGCCAAATATCAAATATCGCCTTCGTTTAAGGGATTTCAAAAGATATGAGTGAAATTTTG
Found at i:81621052 original size:16 final size:16
Alignment explanation
Indices: 81621031--81621066 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
81621021 AAGTTAACAG
81621031 AATATATGATA-ATAAA
1 AATATATGATACA-AAA
81621047 AATATATGATACAAAA
1 AATATATGATACAAAA
81621063 AATA
1 AATA
81621067 CATAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 18 0.95
17 1 0.05
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (16 bp):
AATATATGATACAAAA
Found at i:81621062 original size:14 final size:15
Alignment explanation
Indices: 81621025--81621080 Score: 53
Period size: 14 Copynumber: 3.8 Consensus size: 15
81621015 ATTTAAAAGT
*
81621025 TAACAGAATATATGA
1 TAACAAAATATATGA
*
81621040 TAATAAAAATATATGA
1 TAA-CAAAATATATGA
* *
81621056 T-ACAAAAAATA-CA
1 TAACAAAATATATGA
81621069 TAACAAAATATA
1 TAACAAAATATA
81621081 ATGCCCCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
13 2 0.06
14 16 0.48
15 4 0.12
16 11 0.33
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (15 bp):
TAACAAAATATATGA
Found at i:81623307 original size:44 final size:44
Alignment explanation
Indices: 81623244--81624080 Score: 1077
Period size: 44 Copynumber: 18.9 Consensus size: 44
81623234 CGGGAACACC
* * *
81623244 AATCTGTTATTTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81623288 AATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81623332 AATCTGCTATCTTCGATTTGCCCTCTGACAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81623376 AATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACACCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81623420 AGTCTGCTATATTCGATCTGCTCCCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* ** * * *
81623464 AATCTGTTATCTTCGATCTGCTCCAAATCTGTTATCTTC-GATCTG-CTCCA
1 AATCTGCTATCTTCGATCTGCT-C---TCTGCCA-ATACAGA---GACGCCA
* *
81623514 AATCTGCTATCTTCGATTTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
81623558 AATCTGCTATCCTT-AATCTGCTCTCCGCCAATACAGAGATGTCA
1 AATCTGCTAT-CTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81623602 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
*
81623646 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* **
81623690 AATCTGCTATCTTCGATCTGCCCTCTAACAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81623734 AATCTGCTATCTTCGATCTGCTCTCCGCTAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81623778 AATCTGCTATCTTCGATTTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81623822 AATCTGCTATCTTCGATCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81623866 AATCTGCTATCTTTGATTTGCTCTCTGCCAATACAGAGACGCTA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
81623910 AATCTGCTATCTTCAATCTGCTCTCTGTCAACACAGAGATGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * *
81623954 AATCTGCTATCTTTGATTTGCTCTCTGCCAATACAGAGACGTCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* *
81623998 AATCTGCTATCTTCGATCTGCCCCCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
* * * *
81624042 AATCTGTTATCTTCGATCTCCTCTCTGTCAACACAGAGA
1 AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGA
81624081 TTGCCTTCGT
Statistics
Matches: 694, Mismatches: 87, Indels: 24
0.86 0.11 0.03
Matches are distributed among these distances:
43 4 0.01
44 644 0.93
45 6 0.01
46 6 0.01
48 6 0.01
49 3 0.00
50 24 0.03
51 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (44 bp):
AATCTGCTATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCA
Found at i:81623495 original size:25 final size:25
Alignment explanation
Indices: 81623461--81623536 Score: 134
Period size: 25 Copynumber: 3.0 Consensus size: 25
81623451 TACAGAGACG
81623461 CCAAATCTGTTATCTTCGATCTGCT
1 CCAAATCTGTTATCTTCGATCTGCT
81623486 CCAAATCTGTTATCTTCGATCTGCT
1 CCAAATCTGTTATCTTCGATCTGCT
* *
81623511 CCAAATCTGCTATCTTCGATTTGCT
1 CCAAATCTGTTATCTTCGATCTGCT
81623536 C
1 C
81623537 TCCGCCAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.20, C:0.29, G:0.12, T:0.39
Consensus pattern (25 bp):
CCAAATCTGTTATCTTCGATCTGCT
Found at i:81625008 original size:29 final size:28
Alignment explanation
Indices: 81624950--81625010 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
81624940 TTTAAACACA
*
81624950 AAACCATAAACCCAAAATAATAAACATT
1 AAACCATAAACCCAAAACAATAAACATT
* * * *
81624978 AAACCATAAAACCCTAAACCATAGACTTT
1 AAACCAT-AAACCCAAAACAATAAACATT
81625007 AAAC
1 AAAC
81625011 ATTAAATTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.56, C:0.25, G:0.02, T:0.18
Consensus pattern (28 bp):
AAACCATAAACCCAAAACAATAAACATT
Found at i:81625097 original size:41 final size:41
Alignment explanation
Indices: 81625050--81625154 Score: 149
Period size: 41 Copynumber: 2.6 Consensus size: 41
81625040 AAAATGATTT
* *
81625050 TTTTGCGGCATTTTTTTCATAAACG-CTGCTAATGATTGACC
1 TTTTGCGGCGTTTTTATCATAAACGTC-GCTAATGATTGACC
* * *
81625091 TTTTGCGGCGTATTTCTCATAAACGTCGCTAATGCTTGACC
1 TTTTGCGGCGTTTTTATCATAAACGTCGCTAATGATTGACC
81625132 TTTTGCGGCGTTTTTATCATAAA
1 TTTTGCGGCGTTTTTATCATAAA
81625155 TTCTGCTATA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 56 0.98
42 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.41
Consensus pattern (41 bp):
TTTTGCGGCGTTTTTATCATAAACGTCGCTAATGATTGACC
Found at i:81626139 original size:16 final size:18
Alignment explanation
Indices: 81626108--81626142 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
81626098 AAAAAAATTA
81626108 TATATAATAAATGAATAT
1 TATATAATAAATGAATAT
81626126 TATAT-ATAAA-GAATAT
1 TATATAATAAATGAATAT
81626142 T
1 T
81626143 TTTAATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 5 0.29
18 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (18 bp):
TATATAATAAATGAATAT
Found at i:81626413 original size:14 final size:13
Alignment explanation
Indices: 81626383--81626409 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81626373 GGCCTGCCCG
81626383 TATTAATTTTTTA
1 TATTAATTTTTTA
81626396 TATTAATTTTTTA
1 TATTAATTTTTTA
81626409 T
1 T
81626410 TATTTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TATTAATTTTTTA
Found at i:81626573 original size:30 final size:30
Alignment explanation
Indices: 81626539--81626601 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
81626529 ACTTAACAAG
81626539 CAAATG-ATTCTAAAATAATAAAAAAATTAA
1 CAAATGCATT-TAAAATAATAAAAAAATTAA
*
81626569 CAAATGCCTTTAAAATAATAAAAAAATTAA
1 CAAATGCATTTAAAATAATAAAAAAATTAA
81626599 CAA
1 CAA
81626602 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCATTTAAAATAATAAAAAAATTAA
Found at i:81631673 original size:36 final size:36
Alignment explanation
Indices: 81631626--81631698 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
81631616 ATGCTCTCTA
*
81631626 TCATTTGGTCTGGCTGGCACATTGACTTGCTTACTT
1 TCATTGGGTCTGGCTGGCACATTGACTTGCTTACTT
81631662 TCATTGGGTCTGGCTGGCACATTGACTTGCTTACTT
1 TCATTGGGTCTGGCTGGCACATTGACTTGCTTACTT
81631698 T
1 T
81631699 AAAGCCCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.14, C:0.22, G:0.23, T:0.41
Consensus pattern (36 bp):
TCATTGGGTCTGGCTGGCACATTGACTTGCTTACTT
Found at i:81637635 original size:16 final size:16
Alignment explanation
Indices: 81637614--81637644 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
81637604 AAGACTGTAA
81637614 TTTGACTTTAATGTGT
1 TTTGACTTTAATGTGT
81637630 TTTGACTTTAATGTG
1 TTTGACTTTAATGTG
81637645 CTCCTGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.55
Consensus pattern (16 bp):
TTTGACTTTAATGTGT
Found at i:81642029 original size:21 final size:21
Alignment explanation
Indices: 81642003--81642087 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 21
81641993 TGATCAGTAT
*
81642003 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
81642024 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* *
81642045 ACGACACACGAGGTGCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
81642067 TACGACACATAAAGTGCCTAA
1 -ACGACACACAAAGTGCCTAA
81642088 TTGGTAAAGC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 34 0.65
22 3 0.06
23 15 0.29
ACGTcount: A:0.39, C:0.26, G:0.21, T:0.14
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:81642053 original size:23 final size:22
Alignment explanation
Indices: 81642001--81642075 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
81641991 CCTGATCAGT
** *
81642001 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
81642022 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
81642043 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTG-A
81642066 ATACGACACA
1 ATACGACACA
81642076 TAAAGTGCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 36 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.27, G:0.21, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:81642486 original size:15 final size:15
Alignment explanation
Indices: 81642458--81642515 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
81642448 TCATATATAT
*
81642458 TATATAATTTAATCAA
1 TATA-AATTCAATCAA
81642474 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
81642489 AATAATTTCAATCAA
1 TATAAATTCAATCAA
81642504 TATAAATTCAAT
1 TATAAATTCAAT
81642516 AAAACAGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:81642504 original size:30 final size:28
Alignment explanation
Indices: 81642461--81642519 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
81642451 TATATATTAT
81642461 ATAATTTAATCAATATAAATTCAATCAAA
1 ATAATTTAATCAATATAAATTCAAT-AAA
81642490 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAATTT-AATCAATATAAATTCAATAAA
81642519 A
1 A
81642520 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 18 0.62
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAATTTAATCAATATAAATTCAATAAA
Found at i:81642704 original size:2 final size:2
Alignment explanation
Indices: 81642694--81642735 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
81642684 ACACACACAC
* *
81642694 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81642735 A
1 A
81642736 ATTCAATTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:81651424 original size:12 final size:12
Alignment explanation
Indices: 81651407--81651432 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81651397 AAAATAGGGC
81651407 TTTAGCGGCGTT
1 TTTAGCGGCGTT
81651419 TTTAGCGGCGTT
1 TTTAGCGGCGTT
81651431 TT
1 TT
81651433 ATCAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:81651508 original size:40 final size:40
Alignment explanation
Indices: 81651456--81651558 Score: 125
Period size: 40 Copynumber: 2.5 Consensus size: 40
81651446 TCAAAAATTG
* *
81651456 TAAAACACAGAGCAATAGTGGCGTCTTACGAAAAACGTCGT
1 TAAAA-ACAGAGCAATAGTGGCGTCTTACGAAAAACGCCGC
* * * *
81651497 TAAAAATAGAGCAATAGTGGCATTTTACTAAAAACGCCGC
1 TAAAAACAGAGCAATAGTGGCGTCTTACGAAAAACGCCGC
* *
81651537 TAAAAACAGAGCACTAGCGGCG
1 TAAAAACAGAGCAATAGTGGCG
81651559 CTTTTGGCAT
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
40 47 0.90
41 5 0.10
ACGTcount: A:0.41, C:0.19, G:0.21, T:0.18
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGTGGCGTCTTACGAAAAACGCCGC
Found at i:81651622 original size:41 final size:41
Alignment explanation
Indices: 81651565--81651682 Score: 175
Period size: 41 Copynumber: 2.9 Consensus size: 41
81651555 GGCGCTTTTG
81651565 GCATTAGCGGCGCTTTTGGTAAAACGCCGCAAAAGA-CCTGA
1 GCATTAGCGGCGCTTTTGGTAAAACGCCGCAAAAGACCCT-A
** *
81651606 GCATTAGCGGCGCTTTTGGTAAAACGTTGCTAAAGACCCTA
1 GCATTAGCGGCGCTTTTGGTAAAACGCCGCAAAAGACCCTA
*
81651647 GCATTAGCGGCGCTTTTAGTAAAACGCCGCTAAAAG
1 GCATTAGCGGCGCTTTTGGTAAAACGCCGC-AAAAG
81651683 TCATATAACC
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
41 61 0.90
42 7 0.10
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (41 bp):
GCATTAGCGGCGCTTTTGGTAAAACGCCGCAAAAGACCCTA
Found at i:81652163 original size:35 final size:34
Alignment explanation
Indices: 81652104--81652189 Score: 93
Period size: 35 Copynumber: 2.5 Consensus size: 34
81652094 GTAATATATA
* *
81652104 TAGGGTTTATGATTTGGAGTTTAGGGTTTGGGG-T
1 TAGGGTTTATGATTT-AAGTTTAGGCTTTGGGGAT
*
81652138 GTAGGGTTTATGATTTAATTGTTAGGCTTTGGGGAT
1 -TAGGGTTTATGATTTAAGT-TTAGGCTTTGGGGAT
* *
81652174 TATGGTTTAGGATTTA
1 TAGGGTTTATGATTTA
81652190 GGGTTTAAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
34 2 0.05
35 41 0.93
36 1 0.02
ACGTcount: A:0.19, C:0.01, G:0.35, T:0.45
Consensus pattern (34 bp):
TAGGGTTTATGATTTAAGTTTAGGCTTTGGGGAT
Found at i:81652183 original size:21 final size:21
Alignment explanation
Indices: 81652159--81652202 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
81652149 GATTTAATTG
* * *
81652159 TTAGGCTTTGGGGATTATGGT
1 TTAGGATTTAGGGATTAAGGT
*
81652180 TTAGGATTTAGGGTTTAAGGT
1 TTAGGATTTAGGGATTAAGGT
81652201 TT
1 TT
81652203 TAAGTGTTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.18, C:0.02, G:0.34, T:0.45
Consensus pattern (21 bp):
TTAGGATTTAGGGATTAAGGT
Found at i:81652764 original size:87 final size:86
Alignment explanation
Indices: 81652619--81652783 Score: 285
Period size: 87 Copynumber: 1.9 Consensus size: 86
81652609 CTGGCGTTTA
81652619 TTTAAAAAACGCCGCAAAAAACATAGCAGTTAACGAAAACGGCATCGTTTTAATTGGATATTTAG
1 TTTAAAAAACGCCGCAAAAAACATAGCAGTTAACGAAAACGGCATCGTTTTAATTGGATATTTAG
*
81652684 GAGAGTAGCGGCGGCGGCGTT
66 GAGAGTACCGGCGGCGGCGTT
* *
81652705 TTTAAAAAACGCCGCAAAAAACATAGCAGTTTAACGAAAACGGCGTCGTTTTAATTGGATTTTTA
1 TTTAAAAAACGCCGCAAAAAACATAGCAG-TTAACGAAAACGGCATCGTTTTAATTGGATATTTA
*
81652770 GGGGAGTACCGGCG
65 GGAGAGTACCGGCG
81652784 TTTTTAAAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
86 29 0.39
87 45 0.61
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (86 bp):
TTTAAAAAACGCCGCAAAAAACATAGCAGTTAACGAAAACGGCATCGTTTTAATTGGATATTTAG
GAGAGTACCGGCGGCGGCGTT
Found at i:81654118 original size:13 final size:14
Alignment explanation
Indices: 81654100--81654128 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
81654090 TTATAAATAT
81654100 TTATAATA-TTTAA
1 TTATAATATTTTAA
81654113 TTATAATATTTTAA
1 TTATAATATTTTAA
81654127 TT
1 TT
81654129 CGTCGTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATAATATTTTAA
Found at i:81654530 original size:21 final size:21
Alignment explanation
Indices: 81654504--81654551 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
81654494 TCAACTTAGA
*
81654504 GCGGAGGCAGCAGCGCGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
81654525 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
81654546 GCGGAG
1 GCGGAG
81654552 CAGAACAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.58, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:81656323 original size:21 final size:21
Alignment explanation
Indices: 81656293--81656335 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
81656283 TATGTGGTTA
* *
81656293 TATTTTATTTTATGTAGATAT
1 TATTTAATTTTATATAGATAT
*
81656314 TATTTAATTTTATATATATAT
1 TATTTAATTTTATATAGATAT
81656335 T
1 T
81656336 GCAAGGTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (21 bp):
TATTTAATTTTATATAGATAT
Found at i:81657972 original size:19 final size:18
Alignment explanation
Indices: 81657924--81657972 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
81657914 CTAAACAATT
81657924 TAATAATATAAA-TAATA
1 TAATAATATAAATTAATA
*
81657941 TAA-AATGTGAAATTTAATA
1 TAATAATAT-AAA-TTAATA
81657960 TAATAATATAAAT
1 TAATAATATAAAT
81657973 AGTAGATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
16 4 0.15
17 6 0.23
18 1 0.04
19 11 0.42
20 4 0.15
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (18 bp):
TAATAATATAAATTAATA
Found at i:81658458 original size:9 final size:9
Alignment explanation
Indices: 81658444--81658480 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
81658434 TATAGTTTAA
81658444 TATTCGAAT
1 TATTCGAAT
81658453 TATTCGAAT
1 TATTCGAAT
*
81658462 TATTCGAGT
1 TATTCGAAT
81658471 TATTCGAAT
1 TATTCGAAT
81658480 T
1 T
81658481 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:81664710 original size:25 final size:22
Alignment explanation
Indices: 81664662--81664712 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
81664652 CCATTAAGAA
* *
81664662 AATTATAAAAATATTTATTTAT
1 AATTAAAAAAATATTTATTAAT
81664684 AATTAAAAAAATTATATTATTCAAT
1 AATTAAAAAAA-TAT-TTATT-AAT
81664709 AATT
1 AATT
81664713 TTTTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.42
23 3 0.12
24 5 0.21
25 6 0.25
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
AATTAAAAAAATATTTATTAAT
Found at i:81666076 original size:29 final size:29
Alignment explanation
Indices: 81666002--81666104 Score: 81
Period size: 28 Copynumber: 3.6 Consensus size: 29
81665992 TTTAATTATT
* *
81666002 TTTTTAAATTTTAAAAAT-ATTTTATACT
1 TTTTTAATTTTTAAAAATAATTTTATACA
**
81666030 TTTTATACATTTTT---AATAATTTTATTGA
1 TTTT-TA-ATTTTTAAAAATAATTTTATACA
*
81666058 TTTTTAATTTTTAAAAATAATTTCTATA-T
1 TTTTTAATTTTTAAAAATAATTT-TATACA
81666087 TTCTTTGAATTTTTAAAA
1 TT-TTT-AATTTTTAAAA
81666105 TTAAAAAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
26 6 0.10
27 5 0.08
28 15 0.25
29 12 0.20
30 11 0.18
31 11 0.18
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (29 bp):
TTTTTAATTTTTAAAAATAATTTTATACA
Found at i:81666245 original size:29 final size:28
Alignment explanation
Indices: 81666203--81666257 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
81666193 GTGATTTGAC
*
81666203 AAAAAAATATAAATTCAAAGGTTAAAAATA
1 AAAAAAATATAAATACAAA--TTAAAAATA
81666233 AAAAAAAT-TAAATACAAATTAAAAA
1 AAAAAAATATAAATACAAATTAAAAA
81666258 ATTCTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 7 0.29
29 9 0.38
30 8 0.33
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.22
Consensus pattern (28 bp):
AAAAAAATATAAATACAAATTAAAAATA
Found at i:81668283 original size:31 final size:30
Alignment explanation
Indices: 81668240--81668298 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 30
81668230 CAAATTTGAG
81668240 GTTTAGTTTCTATATTTTTAT-TTTTAAGA
1 GTTTAGTTTCTATATTTTTATATTTTAAGA
*
81668269 GTTTAGTTCCTCTATTTTTTTATATTTTAA
1 GTTTAGTT--TCTATATTTTTATATTTTAA
81668299 AATTTAAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 8 0.31
31 12 0.46
32 6 0.23
ACGTcount: A:0.22, C:0.07, G:0.08, T:0.63
Consensus pattern (30 bp):
GTTTAGTTTCTATATTTTTATATTTTAAGA
Found at i:81670580 original size:10 final size:11
Alignment explanation
Indices: 81670560--81670585 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
81670550 GAAGGTAATC
81670560 TTTCTTTTTTT
1 TTTCTTTTTTT
81670571 TTTCTTTTTTT
1 TTTCTTTTTTT
81670582 TTTC
1 TTTC
81670586 CTGGATGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:81671480 original size:26 final size:26
Alignment explanation
Indices: 81671444--81671495 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
81671434 TCGAGAACTT
81671444 GAATTCTCGAATCTGTTATTTATGCA
1 GAATTCTCGAATCTGTTATTTATGCA
81671470 GAATTCTCGAATCTGTTATTTATGCA
1 GAATTCTCGAATCTGTTATTTATGCA
81671496 TACTTTTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (26 bp):
GAATTCTCGAATCTGTTATTTATGCA
Found at i:81672485 original size:15 final size:15
Alignment explanation
Indices: 81672467--81672501 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
81672457 ACGGGGTCCA
81672467 TCTCCTAGGGTTGCC
1 TCTCCTAGGGTTGCC
*
81672482 TCTCCTAGGGTTGCT
1 TCTCCTAGGGTTGCC
81672497 TCTCC
1 TCTCC
81672502 AAGAGCTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.34, G:0.23, T:0.37
Consensus pattern (15 bp):
TCTCCTAGGGTTGCC
Found at i:81672511 original size:15 final size:15
Alignment explanation
Indices: 81672493--81672550 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
81672483 CTCCTAGGGT
81672493 TGCTTCTCCAAGAGC
1 TGCTTCTCCAAGAGC
*
81672508 TGCTTCCCCTCCACGAGC
1 TGCTT---CTCCAAGAGC
* * *
81672526 TGCATCCCCTAGAGC
1 TGCTTCTCCAAGAGC
81672541 TGCTTCTCCA
1 TGCTTCTCCA
81672551 CCTCCACCTC
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
15 19 0.59
18 13 0.41
ACGTcount: A:0.16, C:0.41, G:0.17, T:0.26
Consensus pattern (15 bp):
TGCTTCTCCAAGAGC
Found at i:81672525 original size:18 final size:17
Alignment explanation
Indices: 81672498--81672546 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
81672488 AGGGTTGCTT
81672498 CTCCAAGAGCTGCTTCCC
1 CTCC-AGAGCTGCTTCCC
*
81672516 CTCCACGAGCTGCATCCC
1 CTCCA-GAGCTGCTTCCC
81672534 CT--AGAGCTGCTTC
1 CTCCAGAGCTGCTTC
81672547 TCCACCTCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 9 0.32
16 1 0.04
17 1 0.04
18 17 0.61
ACGTcount: A:0.16, C:0.43, G:0.18, T:0.22
Consensus pattern (17 bp):
CTCCAGAGCTGCTTCCC
Found at i:81672591 original size:15 final size:15
Alignment explanation
Indices: 81672571--81672617 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
81672561 CACCCCACCC
81672571 CCTCGAGCTGCTTCT
1 CCTCGAGCTGCTTCT
*
81672586 CCTCGAGTTGCTTCT
1 CCTCGAGCTGCTTCT
** *
81672601 CCAAGAGGTGCTTCT
1 CCTCGAGCTGCTTCT
81672616 CC
1 CC
81672618 AAAACCTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.11, C:0.36, G:0.21, T:0.32
Consensus pattern (15 bp):
CCTCGAGCTGCTTCT
Found at i:81676118 original size:24 final size:24
Alignment explanation
Indices: 81676091--81676136 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
81676081 TATTATGTTT
*
81676091 TTTTTTAATTATTTCATA-ATTACA
1 TTTTATAA-TATTTCATACATTACA
*
81676115 TTTTATAATATTTGATACATTA
1 TTTTATAATATTTCATACATTA
81676137 ATAATATATC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTTATAATATTTCATACATTACA
Found at i:81684655 original size:26 final size:26
Alignment explanation
Indices: 81684626--81684678 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
81684616 TAAAAAGGTG
81684626 TACTGATTAATAGAAATTCAGTTCTT
1 TACTGATTAATAGAAATTCAGTTCTT
81684652 TACTGATTAATAGAAATTCAGTTCTT
1 TACTGATTAATAGAAATTCAGTTCTT
81684678 T
1 T
81684679 CTCCATTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (26 bp):
TACTGATTAATAGAAATTCAGTTCTT
Found at i:81686342 original size:17 final size:19
Alignment explanation
Indices: 81686301--81686343 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
81686291 ATTATATATT
*
81686301 ATATATTAATTTTGATTTA
1 ATATATAAATTTTGATTTA
81686320 ATATATAAATTTTGATTTA
1 ATATATAAATTTTGATTTA
81686339 ATATA
1 ATATA
81686344 GTTGATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
ATATATAAATTTTGATTTA
Found at i:81686414 original size:25 final size:27
Alignment explanation
Indices: 81686385--81686436 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
81686375 ATATATTAAT
*
81686385 TTATTT-T-TATATTAGATAAATATAA
1 TTATTTATATATAATAGATAAATATAA
*
81686410 TTATTTATATATAATATATAAATATAA
1 TTATTTATATATAATAGATAAATATAA
81686437 AATAATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 6 0.26
26 1 0.04
27 16 0.70
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (27 bp):
TTATTTATATATAATAGATAAATATAA
Found at i:81686531 original size:28 final size:29
Alignment explanation
Indices: 81686484--81686540 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
81686474 AAAATTTGAT
*
81686484 CAAATTAAAATTTCATGTATAAAATTATA
1 CAAATCAAAATTTCATGTATAAAATTATA
* **
81686513 CAAATCAAAGTTT-ATGTATTCAATTATA
1 CAAATCAAAATTTCATGTATAAAATTATA
81686541 TATTAAACTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.39
Consensus pattern (29 bp):
CAAATCAAAATTTCATGTATAAAATTATA
Found at i:81686811 original size:2 final size:2
Alignment explanation
Indices: 81686804--81686841 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
81686794 TTTGAAGTTG
81686804 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81686842 TAAATTGAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81689672 original size:40 final size:37
Alignment explanation
Indices: 81689606--81689698 Score: 100
Period size: 40 Copynumber: 2.5 Consensus size: 37
81689596 TATGGCAAAG
*
81689606 TGTGAAATGTAGGTAT--TGTATCATCCATCCTGAGT
1 TGTGAAATGTAGGTATGGTGTATCATCCATACTGAGT
*
81689641 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGT-GTATC--ATCCATACTGAGT
** *
81689681 TAAGAAACGTAGGTATGG
1 TGTGAAATGTAGGTATGG
81689699 CATTTCCCAT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
35 16 0.33
37 1 0.02
38 4 0.08
40 27 0.56
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (37 bp):
TGTGAAATGTAGGTATGGTGTATCATCCATACTGAGT
Found at i:81693097 original size:18 final size:20
Alignment explanation
Indices: 81693055--81693091 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81693045 ATATTTTATG
*
81693055 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
81693074 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
81693092 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:81695302 original size:46 final size:46
Alignment explanation
Indices: 81695250--81695661 Score: 581
Period size: 46 Copynumber: 9.0 Consensus size: 46
81695240 AGTGTGCTCT
81695250 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
81695296 CTGATATGAAATGTGTAAGAACATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
81695342 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
81695388 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
81695434 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
81695480 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
81695526 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** *
81695572 GTGACATGAAATGAATAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * * *
81695618 ATGACAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
81695662 TCATGTCAAA
Statistics
Matches: 336, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 336 1.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:81698250 original size:57 final size:57
Alignment explanation
Indices: 81698159--81698459 Score: 453
Period size: 57 Copynumber: 5.2 Consensus size: 57
81698149 GATCTCATTT
* * *
81698159 CACACACTTAGTGCCCCAACAA-TAGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACT-GATCTCGCACACACAGTGCTCGGTTACGGAACTCG
81698218 CACACACAGTGCCTCAACAACTGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACTGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* *
81698275 CACACACAGTGCCTCAACAACCGATCTCGCACATACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACTGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* *
81698332 CGCACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACTGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* * *
81698389 CACACATAATGCCTCAACAA-TCGATCTCGCACACACAGTGCTCGGTTATGGAACTCG
1 CACACACAGTGCCTCAACAACT-GATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
81698446 CACACACAATGCCT
1 CACACACAGTGCCT
81698460 ATGTTCACTT
Statistics
Matches: 227, Mismatches: 13, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
57 219 0.96
58 1 0.00
59 7 0.03
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.19
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACTGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:81698255 original size:29 final size:29
Alignment explanation
Indices: 81698208--81698429 Score: 200
Period size: 29 Copynumber: 7.8 Consensus size: 29
81698198 GTGCTTGGTT
*
81698208 ACGGAACTCGCACACACAGTGCCTCAACA
1 ACGGATCTCGCACACACAGTGCCTCAACA
* ****
81698237 ACTGATCTCGCACACACAGTG-CTCGGTT
1 ACGGATCTCGCACACACAGTGCCTCAACA
*
81698265 ACGGAACTCGCACACACAGTGCCTCAACA
1 ACGGATCTCGCACACACAGTGCCTCAACA
* * ****
81698294 ACCGATCTCGCACATACAGTG-CTCGGTT
1 ACGGATCTCGCACACACAGTGCCTCAACA
* *
81698322 ACGGAACTCGCGCACACAGTGCCTCAACA
1 ACGGATCTCGCACACACAGTGCCTCAACA
* ****
81698351 ACCGATCTCGCACACACAGTG-CTCGGTT
1 ACGGATCTCGCACACACAGTGCCTCAACA
* * *
81698379 ACGGAACTCGCACACATAATGCCTCAACA
1 ACGGATCTCGCACACACAGTGCCTCAACA
81698408 ATC-GATCTCGCACACACAGTGC
1 A-CGGATCTCGCACACACAGTGC
81698430 TCGGTTATGG
Statistics
Matches: 144, Mismatches: 45, Indels: 8
0.73 0.23 0.04
Matches are distributed among these distances:
28 62 0.43
29 81 0.56
30 1 0.01
ACGTcount: A:0.29, C:0.36, G:0.19, T:0.17
Consensus pattern (29 bp):
ACGGATCTCGCACACACAGTGCCTCAACA
Found at i:81701558 original size:12 final size:13
Alignment explanation
Indices: 81701541--81701573 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81701531 AATTTTTAGA
81701541 TATTTAAAT-TTT
1 TATTTAAATATTT
81701553 TATTTAAATATTT
1 TATTTAAATATTT
*
81701566 TATATAAA
1 TATTTAAA
81701574 AATAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TATTTAAATATTT
Found at i:81706107 original size:26 final size:26
Alignment explanation
Indices: 81706078--81706185 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
81706068 TGGTACAAAT
81706078 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
81706104 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81706130 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81706156 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
81706182 TGAT
1 TGAT
81706186 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 75 0.97
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:81707847 original size:27 final size:26
Alignment explanation
Indices: 81707807--81707946 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 26
81707797 AGGAAGCGTC
*
81707807 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
81707834 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
81707861 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
81707888 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
81707915 CTGG-GGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
81707941 CTGGTG
1 CTGGTG
81707947 ACTTCGTCAC
Statistics
Matches: 100, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
25 6 0.06
26 21 0.21
27 71 0.71
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:81707889 original size:54 final size:53
Alignment explanation
Indices: 81707807--81707946 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
81707797 AGGAAGCGTC
81707807 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
81707861 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
81707915 CTGG-GGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
81707947 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
52 7 0.09
53 18 0.22
54 57 0.70
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:81709202 original size:26 final size:25
Alignment explanation
Indices: 81709154--81709215 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 25
81709144 ATGATAATTA
*
81709154 AATTAAATTAATAGTTATATAATGT
1 AATTAAATTAAAAGTTATATAATGT
*
81709179 GATTAAATTAAAATGTTATATAATGT
1 AATTAAATTAAAA-GTTATATAATGT
81709205 AATTAAATTAA
1 AATTAAATTAA
81709216 GTTAATAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 11 0.33
26 22 0.67
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (25 bp):
AATTAAATTAAAAGTTATATAATGT
Found at i:81709314 original size:25 final size:25
Alignment explanation
Indices: 81709282--81709332 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
81709272 TACATTCTTT
*
81709282 TATATGATATATATATAT-ATATATA
1 TATATGATAAATAT-TATGATATATA
*
81709307 TATATGATAAATGTTATGATATATA
1 TATATGATAAATATTATGATATATA
81709332 T
1 T
81709333 GATTGTTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 3 0.13
25 20 0.87
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (25 bp):
TATATGATAAATATTATGATATATA
Found at i:81709330 original size:2 final size:2
Alignment explanation
Indices: 81709282--81709311 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
81709272 TACATTCTTT
81709282 TA TA TGA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T
81709312 GATAAATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81725057 original size:75 final size:75
Alignment explanation
Indices: 81724939--81725109 Score: 228
Period size: 75 Copynumber: 2.4 Consensus size: 75
81724929 CATGGCAAAG
** *
81724939 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTACC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTACC
*
81724999 CATACTGAGC
66 CATACCGAGC
*
81725009 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTACC
*
81725074 CATACCGAGT
66 CATACCGAGC
**
81725084 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
81725110 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 4 0.05
75 62 0.70
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTACC
CATACCGAGC
Found at i:81725107 original size:35 final size:35
Alignment explanation
Indices: 81724943--81725107 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
81724933 GCAAAGTGTG
* **
81724943 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGAA
* * **
81724978 AAATGTAGGTATGGTATTACCCATACTGAGCTGTG
1 AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
81725013 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTTGAA
* *
81725052 GAAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 -AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
81725088 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
81725108 AATGAGGAAA
Statistics
Matches: 112, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
35 79 0.71
36 3 0.03
39 2 0.02
40 28 0.25
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.33
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
Found at i:81741075 original size:33 final size:33
Alignment explanation
Indices: 81741037--81741100 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
81741027 CTGAGTGGGA
*
81741037 GTGTTTGGTTGCTGGACATGAGCTGGAATGTGG
1 GTGTTTGGTTGCTGGACAGGAGCTGGAATGTGG
*
81741070 GTGTTTTGTTGCTGGACAGGAGCTGGAATGT
1 GTGTTTGGTTGCTGGACAGGAGCTGGAATGT
81741101 CAAGAAGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.16, C:0.09, G:0.41, T:0.34
Consensus pattern (33 bp):
GTGTTTGGTTGCTGGACAGGAGCTGGAATGTGG
Found at i:81747510 original size:20 final size:21
Alignment explanation
Indices: 81747471--81747511 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
81747461 CTTAAATAAG
81747471 ATAAAAACTTATTTAGAAACT
1 ATAAAAACTTATTTAGAAACT
* *
81747492 ATAAAAATTTGTTTA-AAACT
1 ATAAAAACTTATTTAGAAACT
81747512 TATTAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (21 bp):
ATAAAAACTTATTTAGAAACT
Found at i:81747626 original size:20 final size:20
Alignment explanation
Indices: 81747590--81747631 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
81747580 GTGAGTATTA
*
81747590 TTTTATTATTTTCTTATAAT
1 TTTTAATATTTTCTTATAAT
81747610 TTTTAATATATTT-TTATAAT
1 TTTTAATAT-TTTCTTATAAT
81747630 TT
1 TT
81747632 CTTATAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTAATATTTTCTTATAAT
Found at i:81747633 original size:30 final size:30
Alignment explanation
Indices: 81747590--81747705 Score: 85
Period size: 30 Copynumber: 3.8 Consensus size: 30
81747580 GTGAGTATTA
*
81747590 TTTTATTATTTTCTTATAATTTTTAATATAT
1 TTTTA-TAATTTCTTATAATTTTTAATATAT
* **
81747621 TTTTATAATTTCTTATAAATCATAATGAT-T
1 TTTTATAATTTCTTATAATTTTTAAT-ATAT
* * * *
81747651 ATCTATAATTTTTTATAATACTTTTAAAATA-
1 TTTTATAATTTCTTATAAT--TTTTAATATAT
*
81747682 TTTAATAATTATCTT-TAATTTTTA
1 TTTTATAATT-TCTTATAATTTTTA
81747706 TAATTCTTAA
Statistics
Matches: 65, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
29 5 0.08
30 33 0.51
31 20 0.31
32 7 0.11
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (30 bp):
TTTTATAATTTCTTATAATTTTTAATATAT
Found at i:81747636 original size:10 final size:9
Alignment explanation
Indices: 81747603--81747730 Score: 51
Period size: 10 Copynumber: 13.0 Consensus size: 9
81747593 TATTATTTTC
81747603 TTATAATTT
1 TTATAATTT
81747612 TTAATATATTT
1 TT-ATA-ATTT
81747623 TTATAATTT
1 TTATAATTT
**
81747632 CTTATAAATCA
1 -TTAT-AATTT
* *
81747643 TAATGATTAT
1 TTATAATT-T
*
81747653 CTATAATTTT
1 TTATAA-TTT
81747663 TTATAATACTT
1 TTATAAT--TT
*
81747674 TTAAAATATT
1 TTATAAT-TT
*
81747684 TAATAATTAT
1 TTATAATT-T
81747694 CTT-TAATTT
1 -TTATAATTT
81747703 TTATAATTCT
1 TTATAATT-T
* **
81747713 TAATTTTTT
1 TTATAATTT
81747722 TTATAATTT
1 TTATAATTT
81747731 CGTATACCTT
Statistics
Matches: 86, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
8 2 0.02
9 23 0.27
10 41 0.48
11 20 0.23
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.59
Consensus pattern (9 bp):
TTATAATTT
Found at i:81747665 original size:40 final size:38
Alignment explanation
Indices: 81747619--81747715 Score: 101
Period size: 40 Copynumber: 2.5 Consensus size: 38
81747609 TTTTTAATAT
*
81747619 ATTTTTATAATTTCTTATAAATCA-TAATGATTATCTATA
1 ATTTTTATAATTTCTTA-AAAT-ATTAATAATTATCTATA
*
81747658 ATTTTTTATAATACTT-TTAAAATATTTAATAATTATCTTTA
1 A-TTTTTATAAT--TTCTTAAAATA-TTAATAATTATCTATA
81747699 ATTTTTATAA-TTCTTAA
1 ATTTTTATAATTTCTTAA
81747716 TTTTTTTTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
37 2 0.04
38 4 0.08
39 2 0.04
40 23 0.46
41 17 0.34
42 2 0.04
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (38 bp):
ATTTTTATAATTTCTTAAAATATTAATAATTATCTATA
Found at i:81770201 original size:29 final size:29
Alignment explanation
Indices: 81770159--81770219 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
81770149 AAAAATTTTG
*
81770159 TTCCACATTATATTTCCAAATATATAATC
1 TTCCACATTATATTCCCAAATATATAATC
81770188 TTCCACATTATATTCCCAAATATATAATC
1 TTCCACATTATATTCCCAAATATATAATC
81770217 TTC
1 TTC
81770220 ACAACTTGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (29 bp):
TTCCACATTATATTCCCAAATATATAATC
Found at i:81770384 original size:23 final size:25
Alignment explanation
Indices: 81770335--81770384 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 25
81770325 TTTGACTTTT
* *
81770335 TCAAGAAAATTTTTACTTTATTTTTA
1 TCAAGAAAATTTTTA-TTTAATATTA
81770361 TCAAG-AAATTTTT-TTTAATATTA
1 TCAAGAAAATTTTTATTTAATATTA
81770384 T
1 T
81770385 AAAAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 9 0.41
25 8 0.36
26 5 0.23
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (25 bp):
TCAAGAAAATTTTTATTTAATATTA
Found at i:81771261 original size:21 final size:21
Alignment explanation
Indices: 81771228--81771269 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
81771218 AATATATTAT
81771228 AAAATATAATATATAAATAAA
1 AAAATATAATATATAAATAAA
81771249 AAAAT-TAATTATATAAATAAA
1 AAAATATAA-TATATAAATAAA
81771270 TGTGACAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAATATAATATATAAATAAA
Found at i:81780252 original size:30 final size:29
Alignment explanation
Indices: 81780205--81780265 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 29
81780195 ACTTATTTTA
81780205 TTGTTAATTTTTTATTATTTTA-AAGACAT
1 TTGTTAATTTTTTATTATTTTAGAA-ACAT
81780234 TTGTTAATTTTGTTATTATTTTAGAAACAT
1 TTGTTAATTTT-TTATTATTTTAGAAACAT
81780264 TT
1 TT
81780266 ATTTGTTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 11 0.37
30 17 0.57
31 2 0.07
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (29 bp):
TTGTTAATTTTTTATTATTTTAGAAACAT
Found at i:81782183 original size:22 final size:22
Alignment explanation
Indices: 81782168--81782212 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
81782158 TAACAACATC
81782168 ACTTCTTTCGTATAACATAAAA
1 ACTTCTTTCGTATAACATAAAA
81782190 ACTTCTTTCGTATAACATAAAA
1 ACTTCTTTCGTATAACATAAAA
81782212 A
1 A
81782213 TTAAGGTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (22 bp):
ACTTCTTTCGTATAACATAAAA
Found at i:81784941 original size:8 final size:8
Alignment explanation
Indices: 81784930--81784954 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
81784920 TTTAATAAGA
81784930 TATTTTAT
1 TATTTTAT
81784938 TATTTTAT
1 TATTTTAT
81784946 TATTTTAT
1 TATTTTAT
81784954 T
1 T
81784955 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:81794449 original size:39 final size:39
Alignment explanation
Indices: 81794342--81794476 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
81794332 GACCTCGAGT
* * * *
81794342 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAT-TATTACTTCGGCTAG-TC
** ** * *
81794383 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
*
81794421 CGATGAGACACTGGGTGTCAATTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAATTATTACTTCG-GCTAGTC
*
81794460 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
81794477 CCATATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
Found at i:81797832 original size:70 final size:76
Alignment explanation
Indices: 81797677--81797848 Score: 187
Period size: 79 Copynumber: 2.3 Consensus size: 76
81797667 TTTCCTATCA
* * * *
81797677 AATTCAAATCACTAATTACTTTTCAATCAATATACATTTCAAATACTCACATATTTTCTTCACTC
1 AATTCAAATCACT-TTTAGTTTCCAATCAATATACATTTCAAATACTCACATA---TATTCACTC
81797742 AATTCAATTTGATTC
62 AATTCAATTTGATTC
*
81797757 AATTCAAATCACTTTTAGTTTCCAATCAATATAC-TTTCAAATATTCACATA-ATTCA-T-AATT
1 AATTCAAATCACTTTTAGTTTCCAATCAATATACATTTCAAATACTCACATATATTCACTCAATT
81797818 CAA-TT-ACTT-
66 CAATTTGA-TTC
*
81797827 AATTCAAATCAATTTTAAGTTT
1 AATTCAAATCACTTTT-AGTTT
81797849 AAGCGACATG
Statistics
Matches: 84, Mismatches: 6, Indels: 13
0.82 0.06 0.13
Matches are distributed among these distances:
70 16 0.19
71 9 0.11
72 7 0.08
73 1 0.01
74 4 0.05
78 16 0.19
79 18 0.21
80 13 0.15
ACGTcount: A:0.38, C:0.19, G:0.02, T:0.42
Consensus pattern (76 bp):
AATTCAAATCACTTTTAGTTTCCAATCAATATACATTTCAAATACTCACATATATTCACTCAATT
CAATTTGATTC
Found at i:81797839 original size:80 final size:80
Alignment explanation
Indices: 81797677--81797840 Score: 181
Period size: 80 Copynumber: 2.0 Consensus size: 80
81797667 TTTCCTATCA
* * * *
81797677 AATTCAAATCACTAATTACTTTTCAATCAATATACATTTCAAATACTCACATATTTTCTTCACTC
1 AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAATACTCACATATATTCATAACTC
** *
81797742 AATTCAATTTGATTC
66 AATTCAATTCAAATC
* * * *
81797757 AATTCAAATCACT-TTTAGTTTCCAATCAATATAC-TTTCAAATATTCACATA-ATTCATAATTC
1 AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAATACTCACATATATTCATAACTC
81797819 AATTACTTAATTCAAATC
66 AATT-C--AATTCAAATC
81797837 AATT
1 AATT
81797841 TTAAGTTTAA
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
77 11 0.16
78 17 0.24
79 18 0.26
80 24 0.34
ACGTcount: A:0.38, C:0.20, G:0.01, T:0.41
Consensus pattern (80 bp):
AATTCAAATCACTAATTACTTTCCAATCAATATACATTTCAAATACTCACATATATTCATAACTC
AATTCAATTCAAATC
Found at i:81802719 original size:7 final size:7
Alignment explanation
Indices: 81802707--81802731 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
81802697 AGCTGAAGCC
81802707 GCCAGCA
1 GCCAGCA
81802714 GCCAGCA
1 GCCAGCA
81802721 GCCAGCA
1 GCCAGCA
81802728 GCCA
1 GCCA
81802732 AGGCTGAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.44, G:0.28, T:0.00
Consensus pattern (7 bp):
GCCAGCA
Found at i:81809682 original size:58 final size:59
Alignment explanation
Indices: 81809568--81809741 Score: 185
Period size: 58 Copynumber: 2.9 Consensus size: 59
81809558 ACATTTGGTG
* * * * *
81809568 CTTGAACTTGTCATTTTTTTTCTTAATTTGATA-TTTAAATTCTTTTTTGTCTAATTTGATA
1 CTTGAACTTGAC-TATTTTTTCTTAATTTGGTACTTT-AATT-TTTTTTGTCCAATTTGACA
* * *
81809629 TTTGACCTTGAC-ATTTTTTCTTAATTTGGTACTTTAATTTTTTTAGTCCAATTTGACA
1 CTTGAACTTGACTATTTTTTCTTAATTTGGTACTTTAATTTTTTTTGTCCAATTTGACA
* * *
81809687 CTTGAACTTGACTCTTTTTTC-TAATTTGGTAC-CTAATCTTTTTTTGTTCAATTTG
1 CTTGAACTTGACTATTTTTTCTTAATTTGGTACTTTAAT-TTTTTTTGTCCAATTTG
81809742 GCACCTAAAC
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
57 4 0.04
58 52 0.54
59 28 0.29
60 3 0.03
61 9 0.09
ACGTcount: A:0.21, C:0.13, G:0.10, T:0.56
Consensus pattern (59 bp):
CTTGAACTTGACTATTTTTTCTTAATTTGGTACTTTAATTTTTTTTGTCCAATTTGACA
Found at i:81815322 original size:25 final size:23
Alignment explanation
Indices: 81815284--81815330 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
81815274 AGTTCTAATT
81815284 CTAAAAATTAATAATAAATTTATCC
1 CTAAAAATTAAT-A-AAATTTATCC
* *
81815309 CTAAATATTTATAAAATTTATC
1 CTAAAAATTAATAAAATTTATC
81815331 AATTCAATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (23 bp):
CTAAAAATTAATAAAATTTATCC
Found at i:81816218 original size:2 final size:2
Alignment explanation
Indices: 81816207--81816236 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
81816197 GGCATGGAAT
81816207 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81816237 TCAAAGGGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81816872 original size:17 final size:18
Alignment explanation
Indices: 81816850--81816889 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
81816840 AAAAGATCAT
*
81816850 AAAAATCTAAAAC-TTAA
1 AAAAATCTAAAACACTAA
81816867 AAAAATCTAAAACACTAA
1 AAAAATCTAAAACACTAA
81816885 AAAAA
1 AAAAA
81816890 GTCCATAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAAATCTAAAACACTAA
Found at i:81819216 original size:2 final size:2
Alignment explanation
Indices: 81819211--81819236 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
81819201 TTTTTGTGTG
81819211 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
81819237 AGTTTTCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81820097 original size:12 final size:12
Alignment explanation
Indices: 81820080--81820106 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
81820070 ATTTTAAGGA
81820080 ATTATTAAATAT
1 ATTATTAAATAT
81820092 ATTATTAAATAT
1 ATTATTAAATAT
81820104 ATT
1 ATT
81820107 TGTCCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTATTAAATAT
Found at i:81820221 original size:20 final size:20
Alignment explanation
Indices: 81820162--81820214 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
81820152 TCCAAGCACG
*
81820162 GTTTTTAATAATTTTAA-ACA
1 GTTTTTATTAATTTTAATA-A
*
81820182 TTTTTTATTAATTTTAATAA
1 GTTTTTATTAATTTTAATAA
81820202 GTTTTTA-TAATTT
1 GTTTTTATTAATTT
81820215 ATTATAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 6 0.21
20 22 0.76
21 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (20 bp):
GTTTTTATTAATTTTAATAA
Found at i:81820222 original size:29 final size:29
Alignment explanation
Indices: 81820164--81820223 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
81820154 CAAGCACGGT
*
81820164 TTTTAATAATTTTAAACATTTTTTATTAA
1 TTTTAATAATTTTAAACATTTATTATTAA
*
81820193 TTTTAATAAGTTTTTATA-ATTTATTA-TAA
1 TTTTAATAA--TTTTAAACATTTATTATTAA
81820222 TT
1 TT
81820224 ATTTTTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 14 0.52
30 7 0.26
31 6 0.22
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (29 bp):
TTTTAATAATTTTAAACATTTATTATTAA
Found at i:81832565 original size:41 final size:42
Alignment explanation
Indices: 81832508--81832595 Score: 169
Period size: 41 Copynumber: 2.1 Consensus size: 42
81832498 AAAGTATACC
81832508 ATTTTCGTAATTAATCTGGCTGACAACCCATTTTGGTGTA-A
1 ATTTTCGTAATTAATCTGGCTGACAACCCATTTTGGTGTATA
81832549 ATTTTCGTAATTAATCTGGCTGACAACCCATTTTGGTGTATA
1 ATTTTCGTAATTAATCTGGCTGACAACCCATTTTGGTGTATA
81832591 ATTTT
1 ATTTT
81832596 TTTTTATAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 40 0.87
42 6 0.13
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (42 bp):
ATTTTCGTAATTAATCTGGCTGACAACCCATTTTGGTGTATA
Found at i:81838907 original size:27 final size:25
Alignment explanation
Indices: 81838849--81838908 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 25
81838839 TAAAAAACTA
*
81838849 TAAAAAAATGTGGATAAAATAAAAC
1 TAAAACAATGTGGATAAAATAAAAC
*
81838874 TACAACAATGTGGACTAAAATTAAAAAC
1 TAAAACAATGTGGA-TAAAA-T-AAAAC
81838902 -AAAACAA
1 TAAAACAA
81838909 AAAATATGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 12 0.41
26 5 0.17
27 7 0.24
28 5 0.17
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.18
Consensus pattern (25 bp):
TAAAACAATGTGGATAAAATAAAAC
Found at i:81839360 original size:24 final size:27
Alignment explanation
Indices: 81839333--81839382 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 27
81839323 CTCAATTAAA
81839333 ATTTT-ATTTTAATATA-AT-ATTTAC
1 ATTTTAATTTTAATATATATAATTTAC
*
81839357 ATTTTAATTTTATTATATATAATTTA
1 ATTTTAATTTTAATATATATAATTTA
81839383 TTAAATCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 5 0.23
25 10 0.45
26 2 0.09
27 5 0.23
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (27 bp):
ATTTTAATTTTAATATATATAATTTAC
Found at i:81840910 original size:15 final size:16
Alignment explanation
Indices: 81840878--81840911 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
81840868 AAAATATGAT
*
81840878 TTTATTATTTTAATAA
1 TTTATAATTTTAATAA
81840894 TTTATAATTTT-ATAA
1 TTTATAATTTTAATAA
81840909 TTT
1 TTT
81840912 TTGGATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATAATTTTAATAA
Found at i:81842528 original size:21 final size:21
Alignment explanation
Indices: 81842489--81842537 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
81842479 TTATTTAAAA
81842489 ATTATAAAAATATAAATTATAT
1 ATTA-AAAAATATAAATTATAT
81842511 ATTAAAATAATA-AAATTATAT
1 ATTAAAA-AATATAAATTATAT
*
81842532 TTTAAA
1 ATTAAA
81842538 TCTCCTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
ATTAAAAAATATAAATTATAT
Found at i:81853467 original size:6 final size:7
Alignment explanation
Indices: 81853447--81853476 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
81853437 TTCAATTGTA
81853447 TTATTTT
1 TTATTTT
81853454 TTATTTT
1 TTATTTT
81853461 TTATTTT
1 TTATTTT
81853468 TTATTTT
1 TTATTTT
81853475 TT
1 TT
81853477 GTCTTACAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTATTTT
Found at i:81857551 original size:31 final size:31
Alignment explanation
Indices: 81857503--81857563 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
81857493 AATGATTATT
81857503 GAACTATTTGAAAGTTTTTATTGAAGTCACA
1 GAACTATTTGAAAGTTTTTATTGAAGTCACA
* *
81857534 GAACTGTTT-AAATGTTTTTATTTAAGTCAC
1 GAACTATTTGAAA-GTTTTTATTGAAGTCAC
81857564 TAGGATGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (31 bp):
GAACTATTTGAAAGTTTTTATTGAAGTCACA
Found at i:81859166 original size:53 final size:58
Alignment explanation
Indices: 81859062--81859171 Score: 158
Period size: 58 Copynumber: 1.9 Consensus size: 58
81859052 AATAGTTTTG
81859062 ATATCAAGTCGTGTGAATTATTAATTAGATGATATTTTTTTAATAAAAATAATAATTCTA
1 ATATCAAGTC-TGTGAATTATTAATTAGA-GATATTTTTTTAATAAAAATAATAATTCTA
*
81859122 ATATCAAGT-TGTGAATTATTAATT-G-GAT-TTTTTTTAA-CAAAATAATAATT
1 ATATCAAGTCTGTGAATTATTAATTAGAGATATTTTTTTAATAAAAATAATAATT
81859172 ATTTTTTCGT
Statistics
Matches: 49, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
53 12 0.24
54 9 0.18
55 3 0.06
57 1 0.02
58 15 0.31
60 9 0.18
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.45
Consensus pattern (58 bp):
ATATCAAGTCTGTGAATTATTAATTAGAGATATTTTTTTAATAAAAATAATAATTCTA
Found at i:81860243 original size:18 final size:21
Alignment explanation
Indices: 81860217--81860257 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 21
81860207 TTCCTTTTAT
*
81860217 ATTTATACATAAT-TT-TTTC
1 ATTTATACAAAATATTATTTC
81860236 ATTT-TACAAAATATTATTTC
1 ATTTATACAAAATATTATTTC
81860256 AT
1 AT
81860258 CTCATAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 7 0.37
19 6 0.32
20 6 0.32
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTTATACAAAATATTATTTC
Found at i:81868241 original size:24 final size:24
Alignment explanation
Indices: 81868208--81868291 Score: 91
Period size: 24 Copynumber: 3.5 Consensus size: 24
81868198 AGAAAGAATG
*
81868208 TATGTATATGTATATGTATATGTA
1 TATGTGTATGTATATGTATATGTA
*
81868232 TATGTGTATGTATATGTGTATGTA
1 TATGTGTATGTATATGTATATGTA
* *
81868256 TATTTGTA--TATATATATATGGTTA
1 TATGTGTATGTATATGTATAT-G-TA
*
81868280 TATGTGTGTGTA
1 TATGTGTATGTA
81868292 AGAAACTCCA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
22 9 0.18
23 1 0.02
24 37 0.76
26 2 0.04
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (24 bp):
TATGTGTATGTATATGTATATGTA
Found at i:81868274 original size:6 final size:6
Alignment explanation
Indices: 81868208--81868272 Score: 85
Period size: 6 Copynumber: 10.5 Consensus size: 6
81868198 AGAAAGAATG
* *
81868208 TATGTA TATGTA TATGTA TATGTA TATGTG TATGTA TATGTG TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
*
81868256 TATTTGTA TATATA TAT
1 TA--TGTA TATGTA TAT
81868273 ATGGTTATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
6 46 0.88
8 6 0.12
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (6 bp):
TATGTA
Found at i:81881456 original size:16 final size:17
Alignment explanation
Indices: 81881437--81881474 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
81881427 CTCAGTAACA
*
81881437 TTTTAT-TTAATAATAT
1 TTTTATCTTAAAAATAT
81881453 TTTTATCTTAAAAATAT
1 TTTTATCTTAAAAATAT
81881470 TTTTA
1 TTTTA
81881475 AAAAACAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTATCTTAAAAATAT
Found at i:81882540 original size:29 final size:29
Alignment explanation
Indices: 81882497--81882554 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
81882487 TATTTTCTAG
*
81882497 TAGGAATAGCATTTTGATATGATAGTAAA
1 TAGGAATAGCATTTTGATATGATAATAAA
*
81882526 TAGGAATAGCGTTTTGATATGATAATAAA
1 TAGGAATAGCATTTTGATATGATAATAAA
81882555 AATGAGTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.34
Consensus pattern (29 bp):
TAGGAATAGCATTTTGATATGATAATAAA
Found at i:81884546 original size:21 final size:22
Alignment explanation
Indices: 81884502--81884563 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 22
81884492 GCGTTCATAC
***
81884502 TATTTGTATATTTAAAATTTAA
1 TATTTGTATATTTAAAAAAAAA
81884524 TATTTGTAT-TTTAAAAAAAAA
1 TATTTGTATATTTAAAAAAAAA
* * *
81884545 TATTTTTAAAATTAAAAAA
1 TATTTGTATATTTAAAAAA
81884564 TCAGATTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 16 0.48
22 17 0.52
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (22 bp):
TATTTGTATATTTAAAAAAAAA
Found at i:81885475 original size:3 final size:3
Alignment explanation
Indices: 81885435--81885463 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
81885425 TTTTATTATA
81885435 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
81885464 ATATAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:81889425 original size:14 final size:15
Alignment explanation
Indices: 81889401--81889435 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
81889391 CGCTTTTGAA
81889401 AATTATTTATTTTAT
1 AATTATTTATTTTAT
81889416 AATT-TTTATTTTAT
1 AATTATTTATTTTAT
*
81889430 TATTAT
1 AATTAT
81889436 AACATTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
AATTATTTATTTTAT
Found at i:81889426 original size:18 final size:19
Alignment explanation
Indices: 81889403--81889453 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
81889393 CTTTTGAAAA
*
81889403 TTATTTATTTTATAA-TTT
1 TTATTTATTTTATAACATT
81889421 TTATTTTATTATTATAACATT
1 TTA-TTTATT-TTATAACATT
81889442 TTATATTATTTT
1 TTAT-TTATTTT
81889454 TGGATAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.11
19 6 0.21
20 9 0.32
21 10 0.36
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (19 bp):
TTATTTATTTTATAACATT
Found at i:81890263 original size:18 final size:18
Alignment explanation
Indices: 81890240--81890277 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
81890230 CATATGAATG
81890240 CTATATGTATTGGTTGGT
1 CTATATGTATTGGTTGGT
81890258 CTATATGTATTGGTTGGT
1 CTATATGTATTGGTTGGT
81890276 CT
1 CT
81890278 TGTCTTGCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.08, G:0.26, T:0.50
Consensus pattern (18 bp):
CTATATGTATTGGTTGGT
Found at i:81906702 original size:2 final size:2
Alignment explanation
Indices: 81906695--81906755 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
81906685 AGCAATGAAT
81906695 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
81906737 AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC A
81906756 TAATAGATAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:81915324 original size:14 final size:14
Alignment explanation
Indices: 81915305--81915332 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81915295 GCTAGCTGGC
81915305 AGAACATGGGATGT
1 AGAACATGGGATGT
81915319 AGAACATGGGATGT
1 AGAACATGGGATGT
81915333 TGATAGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.36, T:0.21
Consensus pattern (14 bp):
AGAACATGGGATGT
Found at i:81945240 original size:17 final size:18
Alignment explanation
Indices: 81945220--81945256 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
81945210 TTTATGATTA
*
81945220 ATTTATAATTATTT-ATG
1 ATTTATAAATATTTAATG
81945237 ATTTATAAATATTTAATG
1 ATTTATAAATATTTAATG
81945255 AT
1 AT
81945257 GTAAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
ATTTATAAATATTTAATG
Found at i:81945545 original size:30 final size:30
Alignment explanation
Indices: 81945481--81945546 Score: 75
Period size: 29 Copynumber: 2.2 Consensus size: 30
81945471 GTCTAATGTG
*
81945481 CAATATTATATATAAATTTTAATGTTATAT
1 CAATTTTATATATAAATTTTAATGTTATAT
*
81945511 -AATTTTATATATGAAATTTTGAT-TTA-ATT
1 CAATTTTATATAT-AAATTTTAATGTTATA-T
81945540 CAATTTT
1 CAATTTT
81945547 CATAAATCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 1 0.03
29 15 0.48
30 15 0.48
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (30 bp):
CAATTTTATATATAAATTTTAATGTTATAT
Found at i:81945767 original size:23 final size:23
Alignment explanation
Indices: 81945722--81945774 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
81945712 AATTTATACA
*
81945722 TTAAATCAAAACTCGTATATAAT
1 TTAAATCAAAACTCATATATAAT
* *
81945745 TTAAATCAAAACTCATTTGTAAT
1 TTAAATCAAAACTCATATATAAT
81945768 TTCAAAT
1 TT-AAAT
81945775 TTTAAACCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.45, C:0.13, G:0.04, T:0.38
Consensus pattern (23 bp):
TTAAATCAAAACTCATATATAAT
Found at i:81950415 original size:31 final size:31
Alignment explanation
Indices: 81950377--81950435 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
81950367 AATAGGGGCC
**
81950377 AATGTGAACCTAATTGTTAAATTCATGAACT
1 AATGTGAACCTAATTACTAAATTCATGAACT
*
81950408 AATGTGAACCTACTTACTAAATTCATGA
1 AATGTGAACCTAATTACTAAATTCATGA
81950436 GTAAAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (31 bp):
AATGTGAACCTAATTACTAAATTCATGAACT
Found at i:81954814 original size:2 final size:2
Alignment explanation
Indices: 81954807--81954831 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
81954797 TTATAGTTTT
81954807 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
81954832 GAAATTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.