Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr09 85040211 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 85040211 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Warning! 160 characters in sequence are not A, C, G, or T File 285 of 292 Found at i:82216189 original size:22 final size:21 Alignment explanation
Indices: 82216159--82216217 Score: 66 Period size: 22 Copynumber: 2.8 Consensus size: 21 82216149 TGTATGAATT * * 82216159 TTTTAATTTTATTTTTGATTAA 1 TTTTGATTTTATTTTT-ATAAA 82216181 TTTTGATTTTAATTTTTATAAA 1 TTTTGATTTT-ATTTTTATAAA * 82216203 TTTTGA-ATTATTTTT 1 TTTTGATTTTATTTTT 82216218 TGATGTGTAT Statistics Matches: 33, Mismatches: 3, Indels: 4 0.82 0.08 0.10 Matches are distributed among these distances: 20 6 0.18 21 2 0.06 22 19 0.58 23 6 0.18 ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68 Consensus pattern (21 bp): TTTTGATTTTATTTTTATAAA Found at i:82217822 original size:12 final size:12 Alignment explanation
Indices: 82217807--82217841 Score: 52 Period size: 12 Copynumber: 2.9 Consensus size: 12 82217797 ATGTTAATAC * 82217807 ATATGCATATAT 1 ATATACATATAT 82217819 ATATACATATAT 1 ATATACATATAT * 82217831 ATATATATATA 1 ATATACATATA 82217842 AAAGTTGGAA Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 12 21 1.00 ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43 Consensus pattern (12 bp): ATATACATATAT Found at i:82219908 original size:3 final size:3 Alignment explanation
Indices: 82219900--82219939 Score: 80 Period size: 3 Copynumber: 13.3 Consensus size: 3 82219890 GCCTTTCTTG 82219900 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A 1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A 82219940 AAATGATTTG Statistics Matches: 37, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 37 1.00 ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00 Consensus pattern (3 bp): AGA Found at i:82232637 original size:28 final size:28 Alignment explanation
Indices: 82232597--82232656 Score: 120 Period size: 28 Copynumber: 2.1 Consensus size: 28 82232587 AAAAATCTTA 82232597 TATTGGTCTTATACTAAGAGTTAGATTG 1 TATTGGTCTTATACTAAGAGTTAGATTG 82232625 TATTGGTCTTATACTAAGAGTTAGATTG 1 TATTGGTCTTATACTAAGAGTTAGATTG 82232653 TATT 1 TATT 82232657 TTGTCCTCTC Statistics Matches: 32, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 28 32 1.00 ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45 Consensus pattern (28 bp): TATTGGTCTTATACTAAGAGTTAGATTG Found at i:82233997 original size:9 final size:9 Alignment explanation
Indices: 82233976--82234013 Score: 60 Period size: 9 Copynumber: 4.3 Consensus size: 9 82233966 TCTTTATTAA 82233976 TTTAAAT-T 1 TTTAAATAT * 82233984 TTTAAAAAT 1 TTTAAATAT 82233993 TTTAAATAT 1 TTTAAATAT 82234002 TTTAAATAT 1 TTTAAATAT 82234011 TTT 1 TTT 82234014 TTTTTATTTT Statistics Matches: 27, Mismatches: 2, Indels: 1 0.90 0.07 0.03 Matches are distributed among these distances: 8 6 0.22 9 21 0.78 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (9 bp): TTTAAATAT Found at i:82234783 original size:25 final size:25 Alignment explanation
Indices: 82234744--82234791 Score: 62 Period size: 25 Copynumber: 1.9 Consensus size: 25 82234734 TTTAAAAAAT 82234744 TTATTTGTTAAAATA-AGTTTTTTAA 1 TTATTTGTTAAAATATA-TTTTTTAA * * 82234769 TTATTTTTTAGAATATATTTTTT 1 TTATTTGTTAAAATATATTTTTT 82234792 CATTTATAAG Statistics Matches: 20, Mismatches: 2, Indels: 2 0.83 0.08 0.08 Matches are distributed among these distances: 25 19 0.95 26 1 0.05 ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62 Consensus pattern (25 bp): TTATTTGTTAAAATATATTTTTTAA Found at i:82236198 original size:20 final size:20 Alignment explanation
Indices: 82236161--82236198 Score: 51 Period size: 20 Copynumber: 1.9 Consensus size: 20 82236151 TGATGGGGAG * 82236161 CAAGAATATCAAGTTGGATT 1 CAAGAATATCAAGCTGGATT 82236181 CAAGAA-ATCGAAGCTGGA 1 CAAGAATATC-AAGCTGGA 82236199 GGAGAGAGAA Statistics Matches: 16, Mismatches: 1, Indels: 2 0.84 0.05 0.11 Matches are distributed among these distances: 19 3 0.19 20 13 0.81 ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21 Consensus pattern (20 bp): CAAGAATATCAAGCTGGATT Found at i:82238214 original size:46 final size:46 Alignment explanation
Indices: 82238145--82238361 Score: 274 Period size: 46 Copynumber: 4.7 Consensus size: 46 82238135 TGGCAACCTG 82238145 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA 1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA * * 82238191 TGTGTAAGGCCATGGTTGGAAGATACCATGGCAACCTGATATGAGA 1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA * * * * 82238237 TGTGGAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA 1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA * ** * * * 82238283 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA 1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AGA * * * * 82238329 TGAGTAAGACCATAGTTGAAAGACACTATGGCA 1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA 82238362 TCACGTCAAA Statistics Matches: 152, Mismatches: 18, Indels: 2 0.88 0.10 0.01 Matches are distributed among these distances: 45 1 0.01 46 151 0.99 ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21 Consensus pattern (46 bp): TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA Found at i:82242925 original size:5 final size:5 Alignment explanation
Indices: 82242915--82242939 Score: 50 Period size: 5 Copynumber: 5.0 Consensus size: 5 82242905 TGGCTCATTT 82242915 CTGTC CTGTC CTGTC CTGTC CTGTC 1 CTGTC CTGTC CTGTC CTGTC CTGTC 82242940 AACCCCAATA Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 20 1.00 ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40 Consensus pattern (5 bp): CTGTC Found at i:82248976 original size:2 final size:2 Alignment explanation
Indices: 82248969--82248998 Score: 60 Period size: 2 Copynumber: 15.0 Consensus size: 2 82248959 CTCCAATGCC 82248969 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 82248999 TATGGGCTTA Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 28 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:82252324 original size:13 final size:14 Alignment explanation
Indices: 82252308--82252343 Score: 51 Period size: 13 Copynumber: 2.8 Consensus size: 14 82252298 CAATCTCATA 82252308 TCTCAATTTCAA-T 1 TCTCAATTTCAATT 82252321 TCTCAA-TTCAATT 1 TCTCAATTTCAATT 82252334 TCTC-ATTTCA 1 TCTCAATTTCA 82252344 TTCCAATAGC Statistics Matches: 21, Mismatches: 0, Indels: 4 0.84 0.00 0.16 Matches are distributed among these distances: 12 6 0.29 13 15 0.71 ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47 Consensus pattern (14 bp): TCTCAATTTCAATT Found at i:82252333 original size:18 final size:19 Alignment explanation
Indices: 82252295--82252335 Score: 59 Period size: 18 Copynumber: 2.2 Consensus size: 19 82252285 TGGTTCATGT 82252295 TTTCAATCTCATATCTCAA 1 TTTCAATCTCATATCTCAA 82252314 TTTCAATTCTCA-AT-TCAA 1 TTTCAA-TCTCATATCTCAA 82252332 TTTC 1 TTTC 82252336 TCATTTCATT Statistics Matches: 21, Mismatches: 0, Indels: 3 0.88 0.00 0.12 Matches are distributed among these distances: 18 8 0.38 19 8 0.38 20 5 0.24 ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46 Consensus pattern (19 bp): TTTCAATCTCATATCTCAA Found at i:82252459 original size:23 final size:23 Alignment explanation
Indices: 82252428--82252476 Score: 89 Period size: 23 Copynumber: 2.1 Consensus size: 23 82252418 TCTGATAGAT * 82252428 ACCATAATATCCAACCCAAACAC 1 ACCAGAATATCCAACCCAAACAC 82252451 ACCAGAATATCCAACCCAAACAC 1 ACCAGAATATCCAACCCAAACAC 82252474 ACC 1 ACC 82252477 CGGAATATTA Statistics Matches: 25, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 23 25 1.00 ACGTcount: A:0.47, C:0.41, G:0.02, T:0.10 Consensus pattern (23 bp): ACCAGAATATCCAACCCAAACAC Found at i:82252865 original size:14 final size:14 Alignment explanation
Indices: 82252843--82252890 Score: 60 Period size: 14 Copynumber: 3.4 Consensus size: 14 82252833 ATATATATAT * 82252843 TATATTTCAATCAA 1 TATAATTCAATCAA 82252857 TATAATTCAATCAA 1 TATAATTCAATCAA * * 82252871 AATGATTTCAATCAA 1 TAT-AATTCAATCAA 82252886 TATAA 1 TATAA 82252891 ATTTGATAAA Statistics Matches: 28, Mismatches: 5, Indels: 2 0.80 0.14 0.06 Matches are distributed among these distances: 14 16 0.57 15 12 0.43 ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38 Consensus pattern (14 bp): TATAATTCAATCAA Found at i:82253638 original size:25 final size:25 Alignment explanation
Indices: 82253605--82253655 Score: 59 Period size: 25 Copynumber: 2.0 Consensus size: 25 82253595 CTTCCCCTGC 82253605 TTTTCGTTTGCCTAT-TCTGTTTCTT 1 TTTTCGTTT-CCTATCTCTGTTTCTT * * * 82253630 TTTTTGTTTCCTTTCTCTTTTTCTT 1 TTTTCGTTTCCTATCTCTGTTTCTT 82253655 T 1 T 82253656 ATTTATTTAC Statistics Matches: 22, Mismatches: 3, Indels: 2 0.81 0.11 0.07 Matches are distributed among these distances: 24 4 0.18 25 18 0.82 ACGTcount: A:0.02, C:0.20, G:0.08, T:0.71 Consensus pattern (25 bp): TTTTCGTTTCCTATCTCTGTTTCTT Found at i:82254381 original size:13 final size:14 Alignment explanation
Indices: 82254363--82254391 Score: 51 Period size: 13 Copynumber: 2.1 Consensus size: 14 82254353 GATTAACTTC 82254363 ATAAATATTTT-TA 1 ATAAATATTTTCTA 82254376 ATAAATATTTTCTA 1 ATAAATATTTTCTA 82254390 AT 1 AT 82254392 CCATTTTTCA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 13 11 0.73 14 4 0.27 ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52 Consensus pattern (14 bp): ATAAATATTTTCTA Found at i:82260423 original size:30 final size:27 Alignment explanation
Indices: 82260369--82260423 Score: 74 Period size: 30 Copynumber: 1.9 Consensus size: 27 82260359 TAATTAAAAA * 82260369 AATTAAAGTTGGTGTAAAGTTTAATAG 1 AATTAAAGTTGGTGTAAAATTTAATAG 82260396 AATTCAAAGTTTGGTGATAAAATTTAAT 1 AATT-AAAG-TTGGTG-TAAAATTTAAT 82260424 TACATAAGAG Statistics Matches: 24, Mismatches: 1, Indels: 3 0.86 0.04 0.11 Matches are distributed among these distances: 27 4 0.17 28 4 0.17 29 6 0.25 30 10 0.42 ACGTcount: A:0.42, C:0.02, G:0.18, T:0.38 Consensus pattern (27 bp): AATTAAAGTTGGTGTAAAATTTAATAG Found at i:82260842 original size:27 final size:26 Alignment explanation
Indices: 82260787--82260845 Score: 86 Period size: 26 Copynumber: 2.3 Consensus size: 26 82260777 ATTATGAAGC 82260787 TTTTTTTATTAGAAAAACAGGTAAAT 1 TTTTTTTATTAGAAAAACAGGTAAAT 82260813 TTTTTTTATTAGATCAAAA-A-GTAAAT 1 TTTTTTTATTAGA--AAAACAGGTAAAT 82260839 TTTTTTT 1 TTTTTTT 82260846 TTTATTTTTA Statistics Matches: 31, Mismatches: 0, Indels: 4 0.89 0.00 0.11 Matches are distributed among these distances: 26 26 0.84 27 1 0.03 28 4 0.13 ACGTcount: A:0.37, C:0.03, G:0.08, T:0.51 Consensus pattern (26 bp): TTTTTTTATTAGAAAAACAGGTAAAT Found at i:82263654 original size:2 final size:2 Alignment explanation
Indices: 82263649--82263673 Score: 50 Period size: 2 Copynumber: 12.5 Consensus size: 2 82263639 AACTGATCTC 82263649 TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA T 82263674 TTGTGATGGT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 23 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:82267601 original size:34 final size:34 Alignment explanation
Indices: 82267562--82267627 Score: 123 Period size: 34 Copynumber: 1.9 Consensus size: 34 82267552 GCAAAGTAAT 82267562 ATTATTTAAAATAATGACTAATTAATATAATTTA 1 ATTATTTAAAATAATGACTAATTAATATAATTTA * 82267596 ATTATTTAAAATAATGACTGATTAATATAATT 1 ATTATTTAAAATAATGACTAATTAATATAATT 82267628 AACTCTAATA Statistics Matches: 31, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 34 31 1.00 ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44 Consensus pattern (34 bp): ATTATTTAAAATAATGACTAATTAATATAATTTA Found at i:82267854 original size:18 final size:18 Alignment explanation
Indices: 82267833--82267875 Score: 52 Period size: 18 Copynumber: 2.4 Consensus size: 18 82267823 TTTTAACTAA 82267833 TAATTATAATTTAAAT-TC 1 TAATTAT-ATTTAAATATC * * 82267851 TAATTATTTTTAAATATT 1 TAATTATATTTAAATATC 82267869 TAATTAT 1 TAATTAT 82267876 CATAGGTTCT Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 17 7 0.32 18 15 0.68 ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56 Consensus pattern (18 bp): TAATTATATTTAAATATC Found at i:82275190 original size:21 final size:20 Alignment explanation
Indices: 82275149--82275204 Score: 69 Period size: 20 Copynumber: 2.7 Consensus size: 20 82275139 CTCTCCTTTC 82275149 TTTAATTTTGATATT-TAGTCT 1 TTTAATTTTG-T-TTCTAGTCT 82275170 TTATAATTTTGTTTCTAGTCT 1 TT-TAATTTTGTTTCTAGTCT * 82275191 TTTAATTTTTTTTC 1 TTTAATTTTGTTTC 82275205 AAATTTTAAA Statistics Matches: 32, Mismatches: 1, Indels: 5 0.84 0.03 0.13 Matches are distributed among these distances: 20 13 0.41 21 11 0.34 22 8 0.25 ACGTcount: A:0.20, C:0.07, G:0.07, T:0.66 Consensus pattern (20 bp): TTTAATTTTGTTTCTAGTCT Found at i:82277034 original size:46 final size:44 Alignment explanation
Indices: 82276975--82277089 Score: 149 Period size: 44 Copynumber: 2.6 Consensus size: 44 82276965 ACAGGACAGA * * 82276975 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG 1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG * * 82277021 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG 1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG * ** 82277065 ACAGGAATAATTCATGTAAGTCCAT 1 ACAGGAATGAGCCATGTAAGTCCAT 82277090 GTCAAAGACA Statistics Matches: 61, Mismatches: 8, Indels: 2 0.86 0.11 0.03 Matches are distributed among these distances: 44 35 0.57 46 26 0.43 ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28 Consensus pattern (44 bp): ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG Found at i:82277070 original size:44 final size:45 Alignment explanation
Indices: 82276975--82277108 Score: 153 Period size: 46 Copynumber: 3.0 Consensus size: 45 82276965 ACAGGACAGA * * 82276975 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG 1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG * * 82277021 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG 1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG * ** * * * 82277065 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG 1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG 82277109 CAGGATATTG Statistics Matches: 74, Mismatches: 12, Indels: 4 0.82 0.13 0.04 Matches are distributed among these distances: 44 36 0.49 45 1 0.01 46 37 0.50 ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27 Consensus pattern (45 bp): ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG Found at i:82283261 original size:2 final size:2 Alignment explanation
Indices: 82283250--82283282 Score: 59 Period size: 2 Copynumber: 17.0 Consensus size: 2 82283240 AAGACTAATT 82283250 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 82283283 AACCACAAAT Statistics Matches: 30, Mismatches: 0, Indels: 2 0.94 0.00 0.06 Matches are distributed among these distances: 1 1 0.03 2 29 0.97 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): TA Found at i:82286566 original size:21 final size:23 Alignment explanation
Indices: 82286524--82286566 Score: 63 Period size: 21 Copynumber: 2.0 Consensus size: 23 82286514 TAAAAAATAT * 82286524 TTTTATCATATATTAATCTATAA 1 TTTTATCATATATTAATATATAA 82286547 TTTTATCAT-T-TTAATATATA 1 TTTTATCATATATTAATATATA 82286567 TATATTTTTT Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 21 9 0.47 22 1 0.05 23 9 0.47 ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56 Consensus pattern (23 bp): TTTTATCATATATTAATATATAA Found at i:82289172 original size:2 final size:2 Alignment explanation
Indices: 82289125--82289162 Score: 76 Period size: 2 Copynumber: 19.0 Consensus size: 2 82289115 TTCATTTCGG 82289125 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 82289163 AGAGATATAT Statistics Matches: 36, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 36 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): TA Found at i:82291001 original size:81 final size:81 Alignment explanation
Indices: 82290860--82291016 Score: 199 Period size: 81 Copynumber: 1.9 Consensus size: 81 82290850 TCTGAGAACC * * * * * * 82290860 CTCATATGGATACTACTCCTCCTCTTGATAACCCCCATGACATGGGTAGTTCACACATAGATATT 1 CTCATATGGATACTACCCCTCATCTTGAAAACCCCAATGACATGGGCAGTCCACACATAGATATT 82290925 CAACAAGATCTCAACT 66 CAACAAGATCTCAACT * * * * 82290941 CTCATATGGATACTCCCCCTCATAC-TGAAAACCCTAATGATATGGGCAGTCCACATATAGATAT 1 CTCATATGGATACTACCCCTCAT-CTTGAAAACCCCAATGACATGGGCAGTCCACACATAGATAT * 82291005 TCATCAAGATCT 65 TCAACAAGATCT 82291017 GTTTCCAGAG Statistics Matches: 64, Mismatches: 11, Indels: 2 0.83 0.14 0.03 Matches are distributed among these distances: 81 63 0.98 82 1 0.02 ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28 Consensus pattern (81 bp): CTCATATGGATACTACCCCTCATCTTGAAAACCCCAATGACATGGGCAGTCCACACATAGATATT CAACAAGATCTCAACT Found at i:82302305 original size:21 final size:22 Alignment explanation
Indices: 82302280--82302329 Score: 61 Period size: 21 Copynumber: 2.4 Consensus size: 22 82302270 TTCAAATACC 82302280 AAATTTTAATTATTT-ATATA-A 1 AAATTTTAA-TATTTCATATATA * 82302301 TAATTTT-ATATTTCATATATA 1 AAATTTTAATATTTCATATATA 82302322 AAATTTTA 1 AAATTTTA 82302330 TAAATAATAT Statistics Matches: 24, Mismatches: 2, Indels: 5 0.77 0.06 0.16 Matches are distributed among these distances: 19 5 0.21 20 6 0.25 21 13 0.54 ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54 Consensus pattern (22 bp): AAATTTTAATATTTCATATATA Found at i:82302339 original size:21 final size:22 Alignment explanation
Indices: 82302294--82302341 Score: 62 Period size: 21 Copynumber: 2.2 Consensus size: 22 82302284 TTTAATTATT ** * 82302294 TATATAATAATTTTATATTTCA 1 TATATAATAATTTTATAAATAA 82302316 TATATAA-AATTTTATAAATAA 1 TATATAATAATTTTATAAATAA 82302337 TATAT 1 TATAT 82302342 TTATATAATT Statistics Matches: 23, Mismatches: 3, Indels: 1 0.85 0.11 0.04 Matches are distributed among these distances: 21 16 0.70 22 7 0.30 ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50 Consensus pattern (22 bp): TATATAATAATTTTATAAATAA Found at i:82303568 original size:16 final size:16 Alignment explanation
Indices: 82303547--82303585 Score: 51 Period size: 16 Copynumber: 2.4 Consensus size: 16 82303537 AATTTTTTGG 82303547 ATCATTTTAAGTTTTA 1 ATCATTTTAAGTTTTA ** * 82303563 ATCATTTTGGGTTTTG 1 ATCATTTTAAGTTTTA 82303579 ATCATTT 1 ATCATTT 82303586 AGGTTGTTTT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 16 20 1.00 ACGTcount: A:0.23, C:0.08, G:0.13, T:0.56 Consensus pattern (16 bp): ATCATTTTAAGTTTTA Found at i:82304608 original size:11 final size:12 Alignment explanation
Indices: 82304583--82304609 Score: 54 Period size: 12 Copynumber: 2.2 Consensus size: 12 82304573 AATCCGTAAA 82304583 TTTTATAGAATT 1 TTTTATAGAATT 82304595 TTTTATAGAATT 1 TTTTATAGAATT 82304607 TTT 1 TTT 82304610 GGTTGGGCCA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 15 1.00 ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63 Consensus pattern (12 bp): TTTTATAGAATT Found at i:82305593 original size:40 final size:38 Alignment explanation
Indices: 82305510--82305676 Score: 163 Period size: 35 Copynumber: 4.6 Consensus size: 38 82305500 TCCTCATTGA * ** * 82305510 AATACCATACCTATATTTTTCAACTCGGTATGG--GA- 1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT * ** 82305545 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT 1 AATACCATACCTACATTTCACAACTCAGTATGGA--TGAT * * 82305585 GATACCATACCTACATTTCACAGCTCAGTAT--A-GAT 1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT 82305620 AATACCATACCTACATTTCACAACTCAGTATGGATG-- 1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT * 82305656 -ATACTATACCTACATTTCACA 1 AATACCATACCTACATTTCACA 82305677 CTTTGCCATG Statistics Matches: 111, Mismatches: 13, Indels: 16 0.79 0.09 0.11 Matches are distributed among these distances: 35 80 0.72 37 1 0.01 38 2 0.02 39 2 0.02 40 26 0.23 ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32 Consensus pattern (38 bp): AATACCATACCTACATTTCACAACTCAGTATGGATGAT Found at i:82305593 original size:75 final size:75 Alignment explanation
Indices: 82305511--82305676 Score: 191 Period size: 75 Copynumber: 2.3 Consensus size: 75 82305501 CCTCATTGAA * ** * * * ** 82305511 ATACCATACCTATATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAACTCAGTA 1 ATACCATACCTACATTTCACAACTCAGTAT-AGATAATACCATACCTACATTTCACAACTCAGTA 82305575 TGGATTTGATG 65 TGGATTTGATG * 82305586 ATACCATACCTACATTTCACAGCTCAGTATAGATAATACCATACCTACATTTCACAACTCAGTAT 1 ATACCATACCTACATTTCACAACTCAGTATAGATAATACCATACCTACATTTCACAACTCAGTAT 82305651 -G----GATG 66 GGATTTGATG * 82305656 ATACTATACCTACATTTCACA 1 ATACCATACCTACATTTCACA 82305677 CTTTGCCATG Statistics Matches: 80, Mismatches: 10, Indels: 7 0.82 0.10 0.07 Matches are distributed among these distances: 70 24 0.30 74 3 0.04 75 53 0.66 ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33 Consensus pattern (75 bp): ATACCATACCTACATTTCACAACTCAGTATAGATAATACCATACCTACATTTCACAACTCAGTAT GGATTTGATG Found at i:82307098 original size:17 final size:18 Alignment explanation
Indices: 82307055--82307106 Score: 70 Period size: 17 Copynumber: 2.9 Consensus size: 18 82307045 ATTTCCAATC * 82307055 ACTTATTTTACCATAAGCT 1 ACTTATTTTACCAT-AGCA * 82307074 ATTTATTTTACCAT-GCA 1 ACTTATTTTACCATAGCA 82307091 ACTTATTTTACCATAG 1 ACTTATTTTACCATAG 82307107 TTCATAAATT Statistics Matches: 29, Mismatches: 3, Indels: 3 0.83 0.09 0.09 Matches are distributed among these distances: 17 15 0.52 18 1 0.03 19 13 0.45 ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44 Consensus pattern (18 bp): ACTTATTTTACCATAGCA Found at i:82311498 original size:19 final size:20 Alignment explanation
Indices: 82311474--82311512 Score: 71 Period size: 20 Copynumber: 2.0 Consensus size: 20 82311464 AATCAACATT 82311474 AAAT-AAAGAAGTAAACTTC 1 AAATAAAAGAAGTAAACTTC 82311493 AAATAAAAGAAGTAAACTTC 1 AAATAAAAGAAGTAAACTTC 82311513 TATACTAATG Statistics Matches: 19, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 19 4 0.21 20 15 0.79 ACGTcount: A:0.59, C:0.10, G:0.10, T:0.21 Consensus pattern (20 bp): AAATAAAAGAAGTAAACTTC Found at i:82312762 original size:55 final size:55 Alignment explanation
Indices: 82312664--82312772 Score: 150 Period size: 55 Copynumber: 2.0 Consensus size: 55 82312654 TTATAGATTT * 82312664 GAATTGCGTTTCAATGAATCCTAATTCAAAAGCGCTTTGGAGTCTAAGTCTAATC 1 GAATTGCGTTTCAATGAATCCTAATTCAAAAGCGCTTTAGAGTCTAAGTCTAATC * ** 82312719 GAATTGGGTTTCAATGAATCCTAATTCAACAAG-G-TATTAGAGTCTGGGTCTAAT 1 GAATTGCGTTTCAATGAATCCTAATTCAA-AAGCGCT-TTAGAGTCTAAGTCTAAT 82312773 TACTCTTCTC Statistics Matches: 48, Mismatches: 4, Indels: 4 0.86 0.07 0.07 Matches are distributed among these distances: 54 1 0.02 55 44 0.92 56 3 0.06 ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33 Consensus pattern (55 bp): GAATTGCGTTTCAATGAATCCTAATTCAAAAGCGCTTTAGAGTCTAAGTCTAATC Found at i:82316123 original size:19 final size:19 Alignment explanation
Indices: 82316088--82316125 Score: 58 Period size: 19 Copynumber: 2.0 Consensus size: 19 82316078 AGCTATCAAG ** 82316088 ATTATATTATATTGCATTA 1 ATTATATTATAAAGCATTA 82316107 ATTATATTATAAAGCATTA 1 ATTATATTATAAAGCATTA 82316126 TATGGTATTA Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 19 17 1.00 ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47 Consensus pattern (19 bp): ATTATATTATAAAGCATTA Found at i:82322972 original size:6 final size:6 Alignment explanation
Indices: 82322961--82322997 Score: 74 Period size: 6 Copynumber: 6.2 Consensus size: 6 82322951 CTTCTTAGAA 82322961 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT G 1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT G 82322998 GTGAATTACG Statistics Matches: 31, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 31 1.00 ACGTcount: A:0.49, C:0.00, G:0.35, T:0.16 Consensus pattern (6 bp): GAAGAT Found at i:82324932 original size:30 final size:32 Alignment explanation
Indices: 82324880--82324940 Score: 90 Period size: 30 Copynumber: 2.0 Consensus size: 32 82324870 ATATTTTTAT * 82324880 TAATATTTATATATTTGTAATTAAATTTAAAA 1 TAATATTTATATATTTGAAATTAAATTTAAAA * 82324912 TAATTTTTAT-TATTT-AAATTAAATTTAAA 1 TAATATTTATATATTTGAAATTAAATTTAAA 82324941 CTAAACGAAA Statistics Matches: 27, Mismatches: 2, Indels: 2 0.87 0.06 0.06 Matches are distributed among these distances: 30 13 0.48 31 5 0.19 32 9 0.33 ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52 Consensus pattern (32 bp): TAATATTTATATATTTGAAATTAAATTTAAAA Found at i:82325155 original size:3 final size:3 Alignment explanation
Indices: 82325147--82325179 Score: 50 Period size: 3 Copynumber: 11.3 Consensus size: 3 82325137 ATAAAATGTC * 82325147 ATG ATG ATG ATG ATG ATG ATA ATG ATG AT- ATG A 1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A 82325180 GACATTTACT Statistics Matches: 27, Mismatches: 2, Indels: 2 0.87 0.06 0.06 Matches are distributed among these distances: 2 2 0.07 3 25 0.93 ACGTcount: A:0.39, C:0.00, G:0.27, T:0.33 Consensus pattern (3 bp): ATG Found at i:82326072 original size:17 final size:18 Alignment explanation
Indices: 82326052--82326097 Score: 51 Period size: 17 Copynumber: 2.6 Consensus size: 18 82326042 CAAATGCACA 82326052 TTTTTATAAAAT-TTAAT 1 TTTTTATAAAATATTAAT ** 82326069 TTTTTATTTAATATTAAT 1 TTTTTATAAAATATTAAT 82326087 TTATTT-TAAAA 1 TT-TTTATAAAA 82326098 GAAATTCAAT Statistics Matches: 23, Mismatches: 4, Indels: 3 0.77 0.13 0.10 Matches are distributed among these distances: 17 10 0.43 18 10 0.43 19 3 0.13 ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61 Consensus pattern (18 bp): TTTTTATAAAATATTAAT Found at i:82329655 original size:2 final size:2 Alignment explanation
Indices: 82329648--82329674 Score: 54 Period size: 2 Copynumber: 13.5 Consensus size: 2 82329638 ACCTATTAAC 82329648 TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA T 82329675 GTCCAAACAA Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 25 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:82331587 original size:18 final size:19 Alignment explanation
Indices: 82331545--82331583 Score: 64 Period size: 19 Copynumber: 2.2 Consensus size: 19 82331535 TCAAAATTTT 82331545 AAATAATAATTATTGTTGA 1 AAATAATAATTATTGTTGA 82331564 AAATAATAA-TATT-TTGA 1 AAATAATAATTATTGTTGA 82331581 AAA 1 AAA 82331584 ATAAAATCTT Statistics Matches: 20, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 17 7 0.35 18 4 0.20 19 9 0.45 ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38 Consensus pattern (19 bp): AAATAATAATTATTGTTGA Found at i:82340732 original size:16 final size:17 Alignment explanation
Indices: 82340711--82340744 Score: 61 Period size: 16 Copynumber: 2.1 Consensus size: 17 82340701 AATTAGAGAA 82340711 TTCTATTTAA-TTCTAT 1 TTCTATTTAATTTCTAT 82340727 TTCTATTTAATTTCTAT 1 TTCTATTTAATTTCTAT 82340744 T 1 T 82340745 AAATCCATTT Statistics Matches: 17, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 16 10 0.59 17 7 0.41 ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65 Consensus pattern (17 bp): TTCTATTTAATTTCTAT Found at i:82341374 original size:15 final size:15 Alignment explanation
Indices: 82341356--82341386 Score: 62 Period size: 15 Copynumber: 2.1 Consensus size: 15 82341346 ATAACTAAAG 82341356 AAAAAATAGATAGAT 1 AAAAAATAGATAGAT 82341371 AAAAAATAGATAGAT 1 AAAAAATAGATAGAT 82341386 A 1 A 82341387 GATGAGAGAT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19 Consensus pattern (15 bp): AAAAAATAGATAGAT Found at i:82347052 original size:26 final size:26 Alignment explanation
Indices: 82347023--82347111 Score: 82 Period size: 23 Copynumber: 3.7 Consensus size: 26 82347013 AAATTACAAG * 82347023 TTATTAGCAATTAATATTAATTTATA 1 TTATTAGTAATTAATATTAATTTATA * * ** 82347049 TTATTTGTTATTAATATTAA-GAATA 1 TTATTAGTAATTAATATTAATTTATA * 82347074 TTA--AGTAATTAATAAT-ATTTATA 1 TTATTAGTAATTAATATTAATTTATA 82347097 TTATTA-T-ATTAATAT 1 TTATTAGTAATTAATAT 82347112 ATTTCGATTT Statistics Matches: 49, Mismatches: 11, Indels: 9 0.71 0.16 0.13 Matches are distributed among these distances: 22 1 0.02 23 23 0.47 24 1 0.02 25 7 0.14 26 17 0.35 ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52 Consensus pattern (26 bp): TTATTAGTAATTAATATTAATTTATA Found at i:82347111 original size:20 final size:20 Alignment explanation
Indices: 82347086--82347253 Score: 60 Period size: 20 Copynumber: 8.7 Consensus size: 20 82347076 AAGTAATTAA 82347086 TAATATTTATATTATTATAT 1 TAATATTTATATTATTATAT 82347106 TAATA--TAT-TTCGATT-TA- 1 TAATATTTATATT--ATTATAT * 82347123 TAA-ATCTATATT-TCTATAT 1 TAATATTTATATTAT-TATAT * * 82347142 TATTTATTT-TATTATTCTAT 1 TA-ATATTTATATTATTATAT * 82347162 CTATTA-TTATATTA-TATAT 1 -TAATATTTATATTATTATAT * * 82347181 TTATAATTTATA-TATTATTT 1 TAAT-ATTTATATTATTATAT * 82347201 TTATATATTATATT-TTAT-T 1 TAATAT-TTATATTATTATAT * 82347220 T-CTATTTAGTTATTATT-TAGT 1 TAATATTTA--TATTATTATA-T * 82347241 TATTATTTATATT 1 TAATATTTATATT 82347254 TAGTATATTT Statistics Matches: 115, Mismatches: 9, Indels: 48 0.67 0.05 0.28 Matches are distributed among these distances: 16 2 0.02 17 9 0.08 18 15 0.13 19 25 0.22 20 49 0.43 21 9 0.08 22 6 0.05 ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62 Consensus pattern (20 bp): TAATATTTATATTATTATAT Found at i:82347157 original size:15 final size:15 Alignment explanation
Indices: 82347139--82347286 Score: 54 Period size: 17 Copynumber: 8.9 Consensus size: 15 82347129 TATATTTCTA 82347139 TATTATTTATTTTAT 1 TATTATTTATTTTAT * 82347154 TATTCTATCTATTATTATAT 1 TA-T-TA--T-TTATTTTAT 82347174 TATATATTTATAATTTAT 1 TAT-TATTTAT--TTTAT 82347192 ATATTATTT-TTATATAT 1 -TATTATTTATT-T-TAT 82347209 TA-TATTTTATTTCTATT 1 TATTA-TTTATTT-TA-T 82347226 TAGTTA-TTA-TTTAGT 1 TA-TTATTTATTTTA-T * 82347241 TATTATTTATATTTAG 1 TATTATTTAT-TTTAT 82347257 TA-TATTTATTATTATT 1 TATTATTTATT-TTA-T * * 82347273 TAATATTTAATTTA 1 TATTATTTATTTTA 82347287 AGTTAAATAG Statistics Matches: 104, Mismatches: 8, Indels: 41 0.68 0.05 0.27 Matches are distributed among these distances: 14 4 0.04 15 23 0.22 16 23 0.22 17 26 0.25 18 9 0.09 19 9 0.09 20 10 0.10 ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64 Consensus pattern (15 bp): TATTATTTATTTTAT Found at i:82347192 original size:13 final size:14 Alignment explanation
Indices: 82347119--82347218 Score: 86 Period size: 13 Copynumber: 7.4 Consensus size: 14 82347109 TATATTTCGA * 82347119 TTTATAAATCTATAT 1 TTTATATAT-TATAT 82347134 TTCTATATTATT-TAT 1 TT-TATA-TATTATAT * 82347149 TTTAT-TATTCTA- 1 TTTATATATTATAT * 82347161 TCTAT-TATTATAT 1 TTTATATATTATAT * * 82347174 TATATAT-TTATAA 1 TTTATATATTATAT 82347187 TTTATATATTAT-T 1 TTTATATATTATAT 82347200 TTTATATATTATAT 1 TTTATATATTATAT 82347214 TTTAT 1 TTTAT 82347219 TTCTATTTAG Statistics Matches: 71, Mismatches: 7, Indels: 15 0.76 0.08 0.16 Matches are distributed among these distances: 12 14 0.20 13 29 0.41 14 14 0.20 15 7 0.10 16 5 0.07 17 2 0.03 ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63 Consensus pattern (14 bp): TTTATATATTATAT Found at i:82347232 original size:28 final size:27 Alignment explanation
Indices: 82347201--82347281 Score: 80 Period size: 28 Copynumber: 3.0 Consensus size: 27 82347191 TATATTATTT * 82347201 TTATATATTATATTTTATTTCTATTTAG 1 TTAT-TATTATATTTTATTTATATTTAG 82347229 TTATTATT-TAGTTATTATTTATATTTAG 1 TTATTATTATA-TT-TTATTTATATTTAG 82347257 -TA-TATT-TATTATTATTTAATATTTA 1 TTATTATTATATT-TTATTT-ATATTTA 82347282 ATTTAAGTTA Statistics Matches: 49, Mismatches: 1, Indels: 8 0.84 0.02 0.14 Matches are distributed among these distances: 25 9 0.18 26 15 0.31 27 8 0.16 28 17 0.35 ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64 Consensus pattern (27 bp): TTATTATTATATTTTATTTATATTTAG Found at i:82347236 original size:11 final size:11 Alignment explanation
Indices: 82347222--82347249 Score: 56 Period size: 11 Copynumber: 2.5 Consensus size: 11 82347212 ATTTTATTTC 82347222 TATTTAGTTAT 1 TATTTAGTTAT 82347233 TATTTAGTTAT 1 TATTTAGTTAT 82347244 TATTTA 1 TATTTA 82347250 TATTTAGTAT Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 17 1.00 ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64 Consensus pattern (11 bp): TATTTAGTTAT Found at i:82347269 original size:7 final size:7 Alignment explanation
Indices: 82347139--82347281 Score: 69 Period size: 7 Copynumber: 21.3 Consensus size: 7 82347129 TATATTTCTA 82347139 TATTATT 1 TATTATT 82347146 TA-T-TT 1 TATTATT 82347151 TATTATT 1 TATTATT 82347158 CTATCTA-T 1 -TAT-TATT 82347166 TATTATAT 1 TATTAT-T 82347174 TATATATT 1 TAT-TATT * 82347182 TATAATT 1 TATTATT 82347189 TA-TA-- 1 TATTATT 82347193 TATTATT 1 TATTATT * 82347200 T-TTATA 1 TATTATT 82347206 TATTATAT 1 TATTAT-T 82347214 T-TTATT 1 TATTATT * 82347220 T-CTATT 1 TATTATT 82347226 TAGTTA-T 1 TA-TTATT * 82347233 TATTTAGT 1 TA-TTATT 82347241 TATTATT 1 TATTATT 82347248 TA-TATT 1 TATTATT * * 82347254 TAGTATA 1 TATTATT 82347261 T-TTA-T 1 TATTATT 82347266 TATTATT 1 TATTATT * 82347273 TAATATT 1 TATTATT 82347280 TA 1 TA 82347282 ATTTAAGTTA Statistics Matches: 106, Mismatches: 12, Indels: 36 0.69 0.08 0.23 Matches are distributed among these distances: 4 2 0.02 5 7 0.07 6 28 0.26 7 46 0.43 8 18 0.17 9 5 0.05 ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64 Consensus pattern (7 bp): TATTATT Found at i:82347286 original size:48 final size:47 Alignment explanation
Indices: 82347166--82347291 Score: 113 Period size: 47 Copynumber: 2.7 Consensus size: 47 82347156 TTCTATCTAT * 82347166 TATTATATTATATATTT-ATAATTTATATA-TTATTTTTATATATTATA 1 TATT-TATTATATATTTAAT-ATTTATTTAGTTATTTTTATATATTATA * * 82347213 T-TTTATT-TCTATTTAGT-TATTATTTAGTTATTATTTATAT-TTAGTA 1 TATTTATTATATATTTAATAT-TTATTTAGTTATT-TTTATATATTA-TA 82347259 TATTTATTAT-TATTTAATATTTAATTTAAGTTA 1 TATTTATTATATATTTAATATTT-ATTT-AGTTA 82347292 AATAGAAAAA Statistics Matches: 65, Mismatches: 4, Indels: 18 0.75 0.05 0.21 Matches are distributed among these distances: 43 1 0.02 44 12 0.18 45 13 0.20 46 12 0.18 47 16 0.25 48 6 0.09 49 5 0.08 ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63 Consensus pattern (47 bp): TATTTATTATATATTTAATATTTATTTAGTTATTTTTATATATTATA Found at i:82347312 original size:31 final size:33 Alignment explanation
Indices: 82347272--82347345 Score: 100 Period size: 31 Copynumber: 2.3 Consensus size: 33 82347262 TTATTATTAT * 82347272 TTAAT-ATTTAATTTAAGT-TAAATAGAA-AAA 1 TTAATAATTTAATTTAAGTATAAATAAAATAAA * 82347302 TTAATAATTTAATTTAAGTATAATTAAAATAAA 1 TTAATAATTTAATTTAAGTATAAATAAAATAAA * 82347335 TTATTAATTTA 1 TTAATAATTTA 82347346 TTTTCATTTT Statistics Matches: 38, Mismatches: 3, Indels: 3 0.86 0.07 0.07 Matches are distributed among these distances: 30 5 0.13 31 13 0.34 32 7 0.18 33 13 0.34 ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45 Consensus pattern (33 bp): TTAATAATTTAATTTAAGTATAAATAAAATAAA Found at i:82355150 original size:70 final size:69 Alignment explanation
Indices: 82355031--82355444 Score: 382 Period size: 70 Copynumber: 6.1 Consensus size: 69 82355021 GAGTTAAGCC * * 82355031 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC 1 TTTTCAATTTTTGTGTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGC 82355095 TGAGGTA 63 TGAGGTA * * * * * 82355102 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG 1 TTTTCAATTTTTGTGTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTG 82355167 AGGTA 65 AGGTA * * 82355172 TTTTTAATTTTTGT-TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCT 1 TTTTCAATTTTTGTGTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCT 82355236 GAGGTA 64 GAGGTA * * * ** * * * 82355242 TTTT-TA-GTTTATGTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT--------TTTA 1 TTTTCAATTTTTGTGTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGA 82355297 ---A 66 GGTA ** ** * 82355298 TTTT-TGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTG 1 TTTTCAATTTTTGTGTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTG 82355358 AGGTA 65 AGGTA * * 82355363 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC 1 TTTTCAATTTTTGTG-TTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGC 82355428 TGAGGTA 63 TGAGGTA 82355435 TTTTCAATTT 1 TTTTCAATTT 82355445 CTGTTTTCAA Statistics Matches: 277, Mismatches: 42, Indels: 47 0.76 0.11 0.13 Matches are distributed among these distances: 53 31 0.11 56 6 0.02 57 3 0.01 59 2 0.01 62 2 0.01 65 5 0.02 66 5 0.02 67 31 0.11 68 4 0.01 69 7 0.03 70 74 0.27 71 39 0.14 72 68 0.25 ACGTcount: A:0.25, C:0.14, G:0.22, T:0.38 Consensus pattern (69 bp): TTTTCAATTTTTGTGTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGA GGTA Found at i:82355337 original size:120 final size:124 Alignment explanation
Indices: 82355173--82355417 Score: 374 Period size: 120 Copynumber: 2.0 Consensus size: 124 82355163 GTTGAGGTAT 82355173 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCTG 1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG * * 82355237 AGGTATTTT-TA-GTTTATG-TTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC 66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC * * 82355292 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT 1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT * * * * 82355357 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC 65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC 82355417 T 1 T 82355418 CAGGTCACGC Statistics Matches: 112, Mismatches: 8, Indels: 6 0.89 0.06 0.05 Matches are distributed among these distances: 119 12 0.11 120 40 0.36 121 19 0.17 122 1 0.01 123 5 0.04 124 7 0.06 125 28 0.25 ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39 Consensus pattern (124 bp): TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC Found at i:82355366 original size:261 final size:256 Alignment explanation
Indices: 82354865--82355454 Score: 1038 Period size: 261 Copynumber: 2.3 Consensus size: 256 82354855 TTTCAAGGAA * 82354865 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT 1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT 82354930 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT 66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT 82354995 TTTAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTC 131 TTTAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTC 82355060 ATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT 196 ATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT 82355121 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT 1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT 82355186 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGG-CACGCTGAGGTATTTTTAGT 66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAG- 82355250 TTATGTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAT 130 ---T-TTT-AATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAT 82355315 CAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTT 190 CAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTT 82355380 TT 255 TT * * * * * * 82355382 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT 1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT 82355447 GTTTTCAA 64 GTTTTCAA 82355455 TTTACGTTGT Statistics Matches: 319, Mismatches: 7, Indels: 9 0.95 0.02 0.03 Matches are distributed among these distances: 255 19 0.06 256 108 0.34 259 1 0.00 260 3 0.01 261 125 0.39 263 63 0.20 ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37 Consensus pattern (256 bp): AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT TTTAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTC ATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT Found at i:82355413 original size:72 final size:71 Alignment explanation
Indices: 82355292--82355457 Score: 244 Period size: 72 Copynumber: 2.3 Consensus size: 71 82355282 GAGTTAAGCC ** * * 82355292 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC 1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC 82355356 TGAGGTA 65 TGAGGTA * 82355363 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC 1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC 82355428 TGAGGTA 65 TGAGGTA * * 82355435 TTTTCAATTTCTGTTTTCAATTT 1 TTTTCAATTTTTGTTTTTAATTT 82355458 ACGTTGTTCA Statistics Matches: 86, Mismatches: 7, Indels: 4 0.89 0.07 0.04 Matches are distributed among these distances: 71 12 0.14 72 70 0.81 73 4 0.05 ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42 Consensus pattern (71 bp): TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT GAGGTA Found at i:82355787 original size:74 final size:76 Alignment explanation
Indices: 82355681--82355825 Score: 224 Period size: 74 Copynumber: 1.9 Consensus size: 76 82355671 TTTTTGCCTT * 82355681 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT 1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT 82355743 CAATTTCTGTTG 65 CAATTTCTGTTG * * * 82355755 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC 1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC 82355820 AATTTC 66 AATTTC 82355826 ATTTTTCAAT Statistics Matches: 64, Mismatches: 4, Indels: 4 0.89 0.06 0.06 Matches are distributed among these distances: 74 42 0.66 76 21 0.33 77 1 0.02 ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28 Consensus pattern (76 bp): TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC AATTTCTGTTG Found at i:82355794 original size:165 final size:165 Alignment explanation
Indices: 82355522--82356155 Score: 702 Period size: 165 Copynumber: 3.9 Consensus size: 165 82355512 CTACTTTTTC 82355522 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG 1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG * * * * 82355587 TTGTCAAAAAAATCAACTGGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT 66 TTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTATT * * * 82355652 TTCAATTTCCGTTTTTCAATTTTTGCCTTTC-AAAA 131 TTCAATTT-CATTTTTCAATTTCTGCATTTCAAAAA 82355687 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG 1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG * * 82355752 TTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATT 66 TTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTATT 82355817 TTCAATTTCATTTTTCAATTTCTGCATTTCAAAAAAAAAA 131 TTCAATTTCATTTTTCAATTTCTGCATTTC-----AAAAA 82355857 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG 1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG * * * * ** * * 82355922 TTTTC--AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTATT 66 TTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTATT * 82355983 TTC-A----A----T---TTT-TG-TTTTC--AAA 131 TTCAATTTCATTTTTCAATTTCTGCATTTCAAAAA * * * * * * 82356002 AAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTCATGCGCTGAGCTATTTTCAATTT 1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA--CGCTGAGGTAATTTCAATTT * * * * * * 82356066 CTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC-ACTGAG 63 CTGT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTC-GAG * 82356130 GTATTTTTTCAATTTATATTTTTCAA 126 GTA--TTTTCAATTT-CATTTTTCAA 82356156 AAAAATCAAC Statistics Matches: 404, Mismatches: 35, Indels: 58 0.81 0.07 0.12 Matches are distributed among these distances: 144 2 0.00 145 38 0.09 147 21 0.05 148 4 0.01 150 34 0.08 152 14 0.03 153 2 0.00 154 8 0.02 155 1 0.00 157 1 0.00 160 1 0.00 161 1 0.00 164 20 0.05 165 133 0.33 166 17 0.04 168 34 0.08 170 73 0.18 ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33 Consensus pattern (165 bp): AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG TTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTATT TTCAATTTCATTTTTCAATTTCTGCATTTCAAAAA Found at i:82355877 original size:96 final size:94 Alignment explanation
Indices: 82355757--82355928 Score: 258 Period size: 96 Copynumber: 1.8 Consensus size: 94 82355747 TTCTGTTGTC * * * 82355757 AAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG-TCGAGGTATTTTCA 1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--CACACGCT-GAGGTAATTTCA 82355821 ATTTCAT-TTTTCAATTTCTGCATTTCAAAAAA 63 ATTTC-TGTTTTCAATTTCTGCATTTCAAAAAA * 82355853 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT 1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTAATTTCAATT 82355918 TCTGTTTTCAA 66 TCTGTTTTCAA 82355929 AATTCAACTC Statistics Matches: 70, Mismatches: 4, Indels: 6 0.88 0.05 0.08 Matches are distributed among these distances: 93 1 0.01 94 28 0.40 95 1 0.01 96 40 0.57 ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31 Consensus pattern (94 bp): AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACACGCTGAGGTAATTTCAATT TCTGTTTTCAATTTCTGCATTTCAAAAAA Found at i:82355943 original size:72 final size:73 Alignment explanation
Indices: 82355854--82356361 Score: 385 Period size: 72 Copynumber: 6.5 Consensus size: 73 82355844 TTCAAAAAAA * 82355854 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT 1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT 82355919 CTGTTTTC 66 CTGTTTTC * * ** * * 82355927 -AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT 1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT * 82355991 TTGTTTTC 66 CTGTTTTC * * * * * 82355999 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTCATGCGCTGAGCTATTTTCAA 1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA--CGCTGAGGTATTTTCAA * 82356063 TTTCTATCTTTC 63 TTTCTGT-TTTC * * * 82356075 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC 1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA--TTTTC * * 82356140 AATTTATATTTTTC 61 AATTTCT-GTTTTC * * * * 82356154 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA 1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTCA ** 82356218 AAATCTGTTTTTC 62 ATTTCTG-TTTTC * * * 82356231 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCACGTGCTG 1 --A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTG * 82356295 AGCTATTTTCAATTTCTGTTTTTTTTTTC 51 AGGTATTTTCAATTTCTG------TTTTC 82356324 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC 1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC 82356362 TTTTTAATTT Statistics Matches: 347, Mismatches: 52, Indels: 62 0.75 0.11 0.13 Matches are distributed among these distances: 72 65 0.19 73 33 0.10 75 20 0.06 76 4 0.01 77 57 0.16 78 4 0.01 79 64 0.18 80 1 0.00 82 5 0.01 83 29 0.08 86 2 0.01 87 2 0.01 88 52 0.15 89 1 0.00 92 2 0.01 93 6 0.02 ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35 Consensus pattern (73 bp): AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT CTGTTTTC Found at i:82356177 original size:79 final size:75 Alignment explanation
Indices: 82355853--82356361 Score: 388 Period size: 79 Copynumber: 6.5 Consensus size: 75 82355843 TTTCAAAAAA * * 82355853 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACACGCTGAGGTAATTTCAAT 1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACGCTGAGGTATTTTCAAT * 82355917 TTCTGTTTTC 66 TTCTTTTTTC * * ** * * 82355927 --AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCA-AGACACGTTGAGGTATTTTCAAT 1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACGCTGAGGTATTTTCAAT 82355989 TT-TTGTTTTC 66 TTCTT-TTTTC * * * * * * 82355999 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTCATGCGCTGAGCTATTTTCA 1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACA--CGCTGAGGTATTTTCA * 82356062 ATTTCTATCTTTC 64 ATTTCT-TTTTTC * * 82356075 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC 1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-CACACGCTGAGGTA--TTTTC * 82356140 AATTTATATTTTTC 63 AATTTCT-TTTTTC * * * ** * 82356154 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA 1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGACACACGCT-GAGGTATTTTCA ** 82356218 AAATCTGTTTTTC 64 ATTTCT-TTTTTC * * * * 82356231 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGGCTCACGTGCTG 1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACAC--GCTG * 82356295 AGCTATTTTCAATTTCTGTTTTTTTTTTC 53 AGGTATTTTCAATTTC------TTTTTTC 82356324 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC 1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC 82356362 TTTTTAATTT Statistics Matches: 346, Mismatches: 53, Indels: 63 0.75 0.11 0.14 Matches are distributed among these distances: 71 1 0.00 72 62 0.18 73 33 0.10 75 18 0.05 76 5 0.01 77 59 0.17 78 4 0.01 79 66 0.19 80 1 0.00 82 5 0.01 83 29 0.08 86 3 0.01 88 50 0.14 89 1 0.00 92 2 0.01 93 6 0.02 94 1 0.00 ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35 Consensus pattern (75 bp): AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACGCTGAGGTATTTTCAAT TTCTTTTTTC Found at i:82356231 original size:14 final size:13 Alignment explanation
Indices: 82356212--82356247 Score: 54 Period size: 14 Copynumber: 2.7 Consensus size: 13 82356202 TGTCGAGGTA 82356212 TTTTCAAAATCTG 1 TTTTCAAAATCTG * 82356225 TTTTTCAAATTCTG 1 -TTTTCAAAATCTG 82356239 TTTTCAAAA 1 TTTTCAAAA 82356248 ATCAACTCAT Statistics Matches: 20, Mismatches: 2, Indels: 1 0.87 0.09 0.04 Matches are distributed among these distances: 13 8 0.40 14 12 0.60 ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50 Consensus pattern (13 bp): TTTTCAAAATCTG Found at i:82356379 original size:30 final size:30 Alignment explanation
Indices: 82356343--82356404 Score: 99 Period size: 30 Copynumber: 2.1 Consensus size: 30 82356333 CAACTCATAT 82356343 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC 1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC * 82356373 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC 1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC 82356403 TG 1 TG 82356405 TTTTTCAAAA Statistics Matches: 30, Mismatches: 1, Indels: 2 0.91 0.03 0.06 Matches are distributed among these distances: 30 29 0.97 31 1 0.03 ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42 Consensus pattern (30 bp): TGCGAGAGGTGAGTTGAGTCTTTTAATTTC Found at i:82356505 original size:255 final size:249 Alignment explanation
Indices: 82355993--82356572 Score: 757 Period size: 255 Copynumber: 2.3 Consensus size: 249 82355983 TTCAATTTTT * * * 82355993 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT 1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT * 82356058 TTCAATTTC-----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA 66 TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA * * 82356118 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTG 131 TCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTG * ** * * * ** 82356183 AGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCT 195 AGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA * * 82356238 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT 1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT * * 82356302 TTCAATTTCTGTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTT 66 TTCAATTTCTGTTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTC * * * * * * * 82356367 A-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTG 128 AGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTG * 82356429 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA 186 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA 82356493 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT 1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT 82356557 TTCAATTTCTGTTTTT 66 TTCAATTTCTGTTTTT 82356573 AATGTCTGTT Statistics Matches: 291, Mismatches: 28, Indels: 22 0.85 0.08 0.06 Matches are distributed among these distances: 244 62 0.21 245 6 0.02 249 13 0.04 250 30 0.10 251 1 0.00 252 3 0.01 253 2 0.01 254 5 0.02 255 146 0.50 256 5 0.02 257 13 0.04 258 5 0.02 ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37 Consensus pattern (249 bp): GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA TCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGA GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA Found at i:82357260 original size:16 final size:17 Alignment explanation
Indices: 82357241--82357281 Score: 52 Period size: 14 Copynumber: 2.5 Consensus size: 17 82357231 AAAAAAAAGA 82357241 AAAAGAAAAACCT-A-CC 1 AAAA-AAAAACCTAACCC 82357257 -AAAAAAAACCTAACCC 1 AAAAAAAAACCTAACCC 82357273 AAAAAAAAA 1 AAAAAAAAA 82357282 AAAGAAAAAA Statistics Matches: 22, Mismatches: 0, Indels: 5 0.81 0.00 0.19 Matches are distributed among these distances: 14 8 0.36 15 4 0.18 16 2 0.09 17 8 0.36 ACGTcount: A:0.71, C:0.22, G:0.02, T:0.05 Consensus pattern (17 bp): AAAAAAAAACCTAACCC Found at i:82357263 original size:14 final size:16 Alignment explanation
Indices: 82357246--82357280 Score: 56 Period size: 16 Copynumber: 2.3 Consensus size: 16 82357236 AAAGAAAAAG 82357246 AAAAACCT-A-CCAAA 1 AAAAACCTAACCCAAA 82357260 AAAAACCTAACCCAAA 1 AAAAACCTAACCCAAA 82357276 AAAAA 1 AAAAA 82357281 AAAAGAAAAA Statistics Matches: 19, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 14 8 0.42 15 1 0.05 16 10 0.53 ACGTcount: A:0.69, C:0.26, G:0.00, T:0.06 Consensus pattern (16 bp): AAAAACCTAACCCAAA Found at i:82371434 original size:16 final size:18 Alignment explanation
Indices: 82371413--82371446 Score: 54 Period size: 17 Copynumber: 2.0 Consensus size: 18 82371403 TTTTTTATTA 82371413 AATA-TTTATT-TATTTT 1 AATATTTTATTATATTTT 82371429 AATATTTTATTATATTTT 1 AATATTTTATTATATTTT 82371447 TATAGGATAC Statistics Matches: 16, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 16 4 0.25 17 6 0.38 18 6 0.38 ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68 Consensus pattern (18 bp): AATATTTTATTATATTTT Found at i:82372147 original size:22 final size:21 Alignment explanation
Indices: 82372122--82372176 Score: 58 Period size: 23 Copynumber: 2.5 Consensus size: 21 82372112 TTTAAATACT * 82372122 ATAAATTACACCATATATAAAA 1 ATAAATTACACAATAT-TAAAA 82372144 ATAAAATGTA-ACAATATTAAAA 1 AT-AAAT-TACACAATATTAAAA * 82372166 ATAAGTTACAC 1 ATAAATTACAC 82372177 TTAGTTGAGC Statistics Matches: 28, Mismatches: 2, Indels: 7 0.76 0.05 0.19 Matches are distributed among these distances: 20 2 0.07 21 5 0.18 22 9 0.32 23 10 0.36 24 2 0.07 ACGTcount: A:0.58, C:0.11, G:0.04, T:0.27 Consensus pattern (21 bp): ATAAATTACACAATATTAAAA Found at i:82372271 original size:19 final size:20 Alignment explanation
Indices: 82372239--82372276 Score: 51 Period size: 19 Copynumber: 1.9 Consensus size: 20 82372229 AATTAACTTA * 82372239 ATTTTTTTTATCT-ATATTC 1 ATTTTTTGTATCTAATATTC * 82372258 ATTTTTTGTGTCTAATATT 1 ATTTTTTGTATCTAATATT 82372277 TTTATTTAAA Statistics Matches: 16, Mismatches: 2, Indels: 1 0.84 0.11 0.05 Matches are distributed among these distances: 19 11 0.69 20 5 0.31 ACGTcount: A:0.21, C:0.08, G:0.05, T:0.66 Consensus pattern (20 bp): ATTTTTTGTATCTAATATTC Found at i:82380878 original size:10 final size:10 Alignment explanation
Indices: 82380850--82380887 Score: 51 Period size: 10 Copynumber: 3.9 Consensus size: 10 82380840 CAGAAACAAT * 82380850 TAAATTAAAA 1 TAAATTAAAC * 82380860 TAAA-GAAAC 1 TAAATTAAAC 82380869 TAAATTAAAC 1 TAAATTAAAC 82380879 TAAATTAAA 1 TAAATTAAA 82380888 GTATGAGAAA Statistics Matches: 24, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 9 7 0.29 10 17 0.71 ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26 Consensus pattern (10 bp): TAAATTAAAC Found at i:82385376 original size:13 final size:13 Alignment explanation
Indices: 82385360--82385384 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 82385350 TTTAATGTTT 82385360 AATTTGTTATTTA 1 AATTTGTTATTTA 82385373 AATTTGTTATTT 1 AATTTGTTATTT 82385385 TGTTTTAATT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64 Consensus pattern (13 bp): AATTTGTTATTTA Found at i:82388125 original size:14 final size:14 Alignment explanation
Indices: 82388092--82388125 Score: 50 Period size: 14 Copynumber: 2.4 Consensus size: 14 82388082 ACATCTCCAG 82388092 TAAAAAATTAAAAA 1 TAAAAAATTAAAAA * * 82388106 TTAAAAATTAAATA 1 TAAAAAATTAAAAA 82388120 TAAAAA 1 TAAAAA 82388126 CTACTTTTAA Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 14 17 1.00 ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26 Consensus pattern (14 bp): TAAAAAATTAAAAA Found at i:82395846 original size:142 final size:146 Alignment explanation
Indices: 82395676--82395968 Score: 504 Period size: 143 Copynumber: 2.0 Consensus size: 146 82395666 ATAAAAATAA * 82395676 TTAATCATTAGACATTTTAACTATTTATATCTGCTTTTACAGATTTCTGACGAA-TTTTTTTTCT 1 TTAATCATTAGACATTTTAACTATTTATATATGCTTTTACAGATTTCTGACGAATTTTTTTTTCT 82395740 AGTATAATAAGAAAACCTCGCTGATGATTCTTTTGGTATAATGAT-AA-TTTTTTATTTTTAAAT 66 AGTATAATAAGAAAACCTCGCTGATGATTCTTTTGGTATAATGATAAATTTTTTTATTTTTAAAT 82395803 ACAAACCTGTATAAAT 131 ACAAACCTGTATAAAT ** * 82395819 TTAATCATT-GACATTTTAACTATTTATATATGCTTTTACATTTTTCTTACGAATTTTTTTTTCT 1 TTAATCATTAGACATTTTAACTATTTATATATGCTTTTACAGATTTCTGACGAATTTTTTTTTCT * 82395883 AGTATAATAAGAAAACCTTGCTGATGATTCTTTTGGTATAATGATAAATTTTTTTATTTTTAAAT 66 AGTATAATAAGAAAACCTCGCTGATGATTCTTTTGGTATAATGATAAATTTTTTTATTTTTAAAT * 82395948 ACAAATCTGTATAAAT 131 ACAAACCTGTATAAAT 82395964 TTAAT 1 TTAAT 82395969 ATATTTTTAT Statistics Matches: 141, Mismatches: 6, Indels: 4 0.93 0.04 0.03 Matches are distributed among these distances: 142 40 0.28 143 63 0.45 144 2 0.01 145 36 0.26 ACGTcount: A:0.33, C:0.11, G:0.09, T:0.48 Consensus pattern (146 bp): TTAATCATTAGACATTTTAACTATTTATATATGCTTTTACAGATTTCTGACGAATTTTTTTTTCT AGTATAATAAGAAAACCTCGCTGATGATTCTTTTGGTATAATGATAAATTTTTTTATTTTTAAAT ACAAACCTGTATAAAT Found at i:82403994 original size:70 final size:70 Alignment explanation
Indices: 82403911--82404052 Score: 275 Period size: 70 Copynumber: 2.0 Consensus size: 70 82403901 ATTCCATTTA 82403911 TAATACTTGAATTTATTAGTTTAAAATTTTGAAATAAAAAAGAAAATAAAGAGTTGTAAGTTGTG 1 TAATACTTGAATTTATTAGTTTAAAATTTTGAAATAAAAAAGAAAATAAAGAGTTGTAAGTTGTG 82403976 ATGAT 66 ATGAT * 82403981 TAATACTTGAATTTATTAGTTTAAAATTTTGAAATAAAAAGGAAAATAAAGAGTTGTAAGTTGTG 1 TAATACTTGAATTTATTAGTTTAAAATTTTGAAATAAAAAAGAAAATAAAGAGTTGTAAGTTGTG 82404046 ATGAT 66 ATGAT 82404051 TA 1 TA 82404053 TAACTGTAAT Statistics Matches: 71, Mismatches: 1, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 70 71 1.00 ACGTcount: A:0.45, C:0.01, G:0.16, T:0.37 Consensus pattern (70 bp): TAATACTTGAATTTATTAGTTTAAAATTTTGAAATAAAAAAGAAAATAAAGAGTTGTAAGTTGTG ATGAT Found at i:82404239 original size:22 final size:20 Alignment explanation
Indices: 82404201--82404245 Score: 54 Period size: 20 Copynumber: 2.1 Consensus size: 20 82404191 AAATTCTGAA * * 82404201 TATTTTATTTTAAATAATAT 1 TATTTTATATTAAATAAAAT 82404221 TATTTTATATTAATTATAAAAT 1 TATTTTATATTAA--ATAAAAT 82404243 TAT 1 TAT 82404246 ATTTTATGTT Statistics Matches: 21, Mismatches: 2, Indels: 2 0.84 0.08 0.08 Matches are distributed among these distances: 20 12 0.57 22 9 0.43 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (20 bp): TATTTTATATTAAATAAAAT Found at i:82404584 original size:28 final size:28 Alignment explanation
Indices: 82404550--82404610 Score: 106 Period size: 28 Copynumber: 2.2 Consensus size: 28 82404540 AAATATATTC 82404550 AAATAATATAAT-TTATTTTAATTATAAA 1 AAATAATAT-ATCTTATTTTAATTATAAA 82404578 AAATAATATATCTTATTTTAATTATAAA 1 AAATAATATATCTTATTTTAATTATAAA 82404606 AAATA 1 AAATA 82404611 TTTTTATAAT Statistics Matches: 32, Mismatches: 0, Indels: 2 0.94 0.00 0.06 Matches are distributed among these distances: 27 2 0.06 28 30 0.94 ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44 Consensus pattern (28 bp): AAATAATATATCTTATTTTAATTATAAA Found at i:82408081 original size:4 final size:4 Alignment explanation
Indices: 82408072--82408096 Score: 50 Period size: 4 Copynumber: 6.2 Consensus size: 4 82408062 CAATAACTGC 82408072 AACA AACA AACA AACA AACA AACA A 1 AACA AACA AACA AACA AACA AACA A 82408097 TCCATTAATA Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 21 1.00 ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00 Consensus pattern (4 bp): AACA Found at i:82413610 original size:20 final size:20 Alignment explanation
Indices: 82413578--82413615 Score: 51 Period size: 20 Copynumber: 1.9 Consensus size: 20 82413568 TTGCATTATT 82413578 ATTATTTTATAACACAAACA 1 ATTATTTTATAACACAAACA * 82413598 ATTAGTTTT-TAACTCAAA 1 ATTA-TTTTATAACACAAA 82413616 ACATTAATTT Statistics Matches: 16, Mismatches: 1, Indels: 2 0.84 0.05 0.11 Matches are distributed among these distances: 20 12 0.75 21 4 0.25 ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39 Consensus pattern (20 bp): ATTATTTTATAACACAAACA Found at i:82421660 original size:31 final size:30 Alignment explanation
Indices: 82421603--82421671 Score: 79 Period size: 31 Copynumber: 2.3 Consensus size: 30 82421593 ATGTTGGGCC ** * 82421603 CTTATTTGACAATTTTAAAAG-TTTTAACT 1 CTTATTTGACAATTCAAAAAGATTTAAACT 82421632 CTTATTTGAGCAACTTCAAAAAGATTTAAACT 1 CTTATTTGA-CAA-TTCAAAAAGATTTAAACT 82421664 -TTATTTGA 1 CTTATTTGA 82421672 TATTTTAAAA Statistics Matches: 34, Mismatches: 3, Indels: 4 0.83 0.07 0.10 Matches are distributed among these distances: 29 9 0.26 30 3 0.09 31 15 0.44 32 7 0.21 ACGTcount: A:0.36, C:0.12, G:0.09, T:0.43 Consensus pattern (30 bp): CTTATTTGACAATTCAAAAAGATTTAAACT Found at i:82428607 original size:20 final size:20 Alignment explanation
Indices: 82428570--82428606 Score: 58 Period size: 19 Copynumber: 1.9 Consensus size: 20 82428560 CAGTTTTTTC 82428570 ATTTTAATTTTAGGTTTTGA 1 ATTTTAATTTTAGGTTTTGA * 82428590 ATTTT-ATTTTATGTTTT 1 ATTTTAATTTTAGGTTTT 82428607 TCTTAAATTA Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 19 11 0.69 20 5 0.31 ACGTcount: A:0.22, C:0.00, G:0.11, T:0.68 Consensus pattern (20 bp): ATTTTAATTTTAGGTTTTGA Found at i:82428906 original size:6 final size:6 Alignment explanation
Indices: 82428895--82428925 Score: 62 Period size: 6 Copynumber: 5.2 Consensus size: 6 82428885 CAATTATTAA 82428895 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A 1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A 82428926 GGTTTAGTTA Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 25 1.00 ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16 Consensus pattern (6 bp): AAAAAT Found at i:82435651 original size:9 final size:9 Alignment explanation
Indices: 82435639--82435663 Score: 50 Period size: 9 Copynumber: 2.8 Consensus size: 9 82435629 TGGTGGTGTA 82435639 GGTGATGGT 1 GGTGATGGT 82435648 GGTGATGGT 1 GGTGATGGT 82435657 GGTGATG 1 GGTGATG 82435664 AATCTTTTAT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 16 1.00 ACGTcount: A:0.12, C:0.00, G:0.56, T:0.32 Consensus pattern (9 bp): GGTGATGGT Found at i:82436364 original size:11 final size:11 Alignment explanation
Indices: 82436344--82436374 Score: 55 Period size: 11 Copynumber: 2.9 Consensus size: 11 82436334 TTAATTATTT 82436344 AATT-TTAAAA 1 AATTATTAAAA 82436354 AATTATTAAAA 1 AATTATTAAAA 82436365 AATTATTAAA 1 AATTATTAAA 82436375 TTATTTAAAA Statistics Matches: 20, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 10 4 0.20 11 16 0.80 ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39 Consensus pattern (11 bp): AATTATTAAAA Found at i:82436402 original size:31 final size:31 Alignment explanation
Indices: 82436367--82436429 Score: 81 Period size: 31 Copynumber: 2.0 Consensus size: 31 82436357 TATTAAAAAA * 82436367 TTATTAAATTATTTAAAAGAATTTATTTAAG 1 TTATTAAATTATTCAAAAGAATTTATTTAAG * *** 82436398 TTATTGAATTATTCAAAATTTTTTATTTAAG 1 TTATTAAATTATTCAAAAGAATTTATTTAAG 82436429 T 1 T 82436430 CGTTGAGTTG Statistics Matches: 27, Mismatches: 5, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 31 27 1.00 ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52 Consensus pattern (31 bp): TTATTAAATTATTCAAAAGAATTTATTTAAG Found at i:82441135 original size:19 final size:18 Alignment explanation
Indices: 82441101--82441138 Score: 51 Period size: 19 Copynumber: 2.1 Consensus size: 18 82441091 AACACTTGTC 82441101 TTTTTAATTTTATAATTA 1 TTTTTAATTTTATAATTA 82441119 TTTTTACATCTTT-TAATTA 1 TTTTTA-AT-TTTATAATTA 82441138 T 1 T 82441139 AAATTTGAAT Statistics Matches: 18, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 18 6 0.33 19 9 0.50 20 3 0.17 ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66 Consensus pattern (18 bp): TTTTTAATTTTATAATTA Found at i:82446354 original size:24 final size:25 Alignment explanation
Indices: 82446327--82446379 Score: 65 Period size: 24 Copynumber: 2.2 Consensus size: 25 82446317 TCAAAAGATG ** * 82446327 TAATAATAAATTTAAAT-TTTATAT 1 TAATAATAAATAAAAATGATTATAT 82446351 TAAT-ATAAATAAAAATGATTATAT 1 TAATAATAAATAAAAATGATTATAT 82446375 TAATA 1 TAATA 82446380 TTAGATTAAA Statistics Matches: 24, Mismatches: 3, Indels: 3 0.80 0.10 0.10 Matches are distributed among these distances: 23 10 0.42 24 14 0.58 ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43 Consensus pattern (25 bp): TAATAATAAATAAAAATGATTATAT Found at i:82456091 original size:20 final size:21 Alignment explanation
Indices: 82456053--82456092 Score: 55 Period size: 20 Copynumber: 2.0 Consensus size: 21 82456043 TTGTATTTTA * 82456053 TTCTTCAACTTTTTCCTTTCT 1 TTCTTCAACATTTTCCTTTCT * 82456074 TTCTTC-ACATTTTGCTTTC 1 TTCTTCAACATTTTCCTTTC 82456093 CTGTTTAATT Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 20 11 0.65 21 6 0.35 ACGTcount: A:0.10, C:0.28, G:0.03, T:0.60 Consensus pattern (21 bp): TTCTTCAACATTTTCCTTTCT Found at i:82458332 original size:20 final size:20 Alignment explanation
Indices: 82458294--82458332 Score: 53 Period size: 20 Copynumber: 1.9 Consensus size: 20 82458284 AAAATTTGAA * 82458294 AAATATATGAATTAAATTTC 1 AAATATATGAATGAAATTTC 82458314 AAATAT-TGAATGAAGATTT 1 AAATATATGAATGAA-ATTT 82458333 TAACATAAAT Statistics Matches: 17, Mismatches: 1, Indels: 2 0.85 0.05 0.10 Matches are distributed among these distances: 19 7 0.41 20 10 0.59 ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38 Consensus pattern (20 bp): AAATATATGAATGAAATTTC Found at i:82462883 original size:22 final size:22 Alignment explanation
Indices: 82462848--82462898 Score: 68 Period size: 21 Copynumber: 2.3 Consensus size: 22 82462838 ATAATTATAG 82462848 ATTTATTGTTTAAATTTCTATTAT 1 ATTT-TTGTTTAAATTT-TATTAT * 82462872 ATTTTTG-TTAAATTTTTTTAT 1 ATTTTTGTTTAAATTTTATTAT 82462893 ATTTTT 1 ATTTTT 82462899 TGATTATTCT Statistics Matches: 26, Mismatches: 1, Indels: 3 0.87 0.03 0.10 Matches are distributed among these distances: 21 11 0.42 22 8 0.31 23 3 0.12 24 4 0.15 ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69 Consensus pattern (22 bp): ATTTTTGTTTAAATTTTATTAT Found at i:82462899 original size:22 final size:24 Alignment explanation
Indices: 82462848--82462900 Score: 67 Period size: 22 Copynumber: 2.3 Consensus size: 24 82462838 ATAATTATAG * 82462848 ATTTATTGTTTAAATTTCTATTAT 1 ATTTTTTGTTTAAATTTCTATTAT * 82462872 A-TTTTTG-TTAAATTT-TTTTAT 1 ATTTTTTGTTTAAATTTCTATTAT 82462893 ATTTTTTG 1 ATTTTTTG 82462901 ATTATTCTTT Statistics Matches: 26, Mismatches: 2, Indels: 4 0.81 0.06 0.12 Matches are distributed among these distances: 21 6 0.23 22 14 0.54 23 5 0.19 24 1 0.04 ACGTcount: A:0.25, C:0.02, G:0.06, T:0.68 Consensus pattern (24 bp): ATTTTTTGTTTAAATTTCTATTAT Found at i:82464168 original size:16 final size:16 Alignment explanation
Indices: 82464147--82464177 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 82464137 GTTGAGAATT 82464147 AATTTAGTTTAAATAC 1 AATTTAGTTTAAATAC * 82464163 AATTTATTTTAAATA 1 AATTTAGTTTAAATA 82464178 GAAAAGTCGA Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48 Consensus pattern (16 bp): AATTTAGTTTAAATAC Found at i:82465961 original size:3 final size:3 Alignment explanation
Indices: 82465955--82466093 Score: 69 Period size: 3 Copynumber: 47.3 Consensus size: 3 82465945 TTTAATGTTG 82465955 TTA TTA TTA TATA TTA TTA TTA -TA TTTA TTA -TA TTA -TA TTTA TT- 1 TTA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA -TTA TTA * * * ** 82465999 TTA TTA CTG TTA CTA TTA TT- TTA -TA TATA TTTA TTA CCA TTA TT- 1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA TTA * * ** * * * 82466043 TTT TTA TTA TTA TTA ATA ACA -TA TTG TTA TTT TTA TTA TTG TTA TTA 1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA 82466090 TTA T 1 TTA T 82466094 CATGGTGCTA Statistics Matches: 103, Mismatches: 20, Indels: 26 0.69 0.13 0.17 Matches are distributed among these distances: 2 15 0.15 3 76 0.74 4 11 0.11 5 1 0.01 ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63 Consensus pattern (3 bp): TTA Found at i:82470253 original size:23 final size:23 Alignment explanation
Indices: 82470227--82470279 Score: 54 Period size: 23 Copynumber: 2.3 Consensus size: 23 82470217 TTCTGAAAAA * 82470227 TCTGAAAATATAGAAT-TTATTTT 1 TCTGAAAATATAAAATATT-TTTT * * 82470250 TCTGGAATTATAAAATATTTTTT 1 TCTGAAAATATAAAATATTTTTT * 82470273 TTTGAAA 1 TCTGAAA 82470280 TTATGATTAT Statistics Matches: 24, Mismatches: 5, Indels: 2 0.77 0.16 0.06 Matches are distributed among these distances: 23 22 0.92 24 2 0.08 ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49 Consensus pattern (23 bp): TCTGAAAATATAAAATATTTTTT Found at i:82486241 original size:46 final size:44 Alignment explanation
Indices: 82486137--82486244 Score: 144 Period size: 44 Copynumber: 2.4 Consensus size: 44 82486127 TGTCTTTGAC ** * * * 82486137 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT 1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT * 82486181 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT 1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT 82486227 ATGGACTTACATGGCTCA 1 ATGGACTTACATGGCTCA 82486245 TTTCGTTCTA Statistics Matches: 56, Mismatches: 6, Indels: 2 0.88 0.09 0.03 Matches are distributed among these distances: 44 33 0.59 46 23 0.41 ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33 Consensus pattern (44 bp): ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT Found at i:82488444 original size:25 final size:27 Alignment explanation
Indices: 82488416--82488476 Score: 65 Period size: 29 Copynumber: 2.3 Consensus size: 27 82488406 AACTACATTA 82488416 AAAGAAATGAAG-AAGAG-A-GGAAAAT 1 AAAGAAA-GAAGAAAGAGAATGGAAAAT * 82488441 AAAGGAAGAAGCAAAAGAGAATGGAAAAT 1 AAAGAAAGAAG--AAAGAGAATGGAAAAT 82488470 AAAGAAA 1 AAAGAAA 82488477 AAAAGAAAAG Statistics Matches: 29, Mismatches: 2, Indels: 6 0.78 0.05 0.16 Matches are distributed among these distances: 24 4 0.14 25 6 0.21 27 5 0.17 28 1 0.03 29 13 0.45 ACGTcount: A:0.66, C:0.02, G:0.26, T:0.07 Consensus pattern (27 bp): AAAGAAAGAAGAAAGAGAATGGAAAAT Found at i:82488839 original size:22 final size:23 Alignment explanation
Indices: 82488805--82488862 Score: 64 Period size: 22 Copynumber: 2.5 Consensus size: 23 82488795 ATTATTTAAA * * 82488805 TAAATAATAATTAAATTCAAT-T 1 TAAAAAATAATTAAATTAAATAT * * 82488827 TAAAAAATTATTAATTTAAATAAT 1 TAAAAAATAATTAAATTAAAT-AT 82488851 TAAAAAATAATT 1 TAAAAAATAATT 82488863 GTTTATTATA Statistics Matches: 29, Mismatches: 5, Indels: 2 0.81 0.14 0.06 Matches are distributed among these distances: 22 17 0.59 24 12 0.41 ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40 Consensus pattern (23 bp): TAAAAAATAATTAAATTAAATAT Found at i:82488841 original size:26 final size:25 Alignment explanation
Indices: 82488792--82488858 Score: 68 Period size: 24 Copynumber: 2.7 Consensus size: 25 82488782 AACTTTCCAA * 82488792 TAAATTATTTAAATAAA-TAATAA-T 1 TAAATAATTTAAA-AAATTAATAATT * 82488816 TAAATTCAATTTAAAAAATTATTAATT 1 TAAA-T-AATTTAAAAAATTAATAATT 82488843 TAAATAA-TTAAAAAAT 1 TAAATAATTTAAAAAAT 82488859 AATTGTTTAT Statistics Matches: 37, Mismatches: 2, Indels: 8 0.79 0.04 0.17 Matches are distributed among these distances: 24 13 0.35 25 6 0.16 26 13 0.35 27 5 0.14 ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40 Consensus pattern (25 bp): TAAATAATTTAAAAAATTAATAATT Found at i:82490072 original size:2 final size:2 Alignment explanation
Indices: 82490052--82490090 Score: 51 Period size: 2 Copynumber: 19.0 Consensus size: 2 82490042 CAAATCTTAT * * 82490052 TA TA TA TG TA TG TA CTA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA 82490091 AAAGATAAAA Statistics Matches: 32, Mismatches: 4, Indels: 2 0.84 0.11 0.05 Matches are distributed among these distances: 2 30 0.94 3 2 0.06 ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49 Consensus pattern (2 bp): TA Found at i:82494658 original size:24 final size:24 Alignment explanation
Indices: 82494622--82494672 Score: 75 Period size: 24 Copynumber: 2.1 Consensus size: 24 82494612 AACGAAGGAT * 82494622 GGACCTTTCGGTGATGGAATATCA 1 GGACCTTTAGGTGATGGAATATCA * * 82494646 GGACTTTTAGGTGGTGGAATATCA 1 GGACCTTTAGGTGATGGAATATCA 82494670 GGA 1 GGA 82494673 GGGATGCTCG Statistics Matches: 24, Mismatches: 3, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 24 24 1.00 ACGTcount: A:0.25, C:0.12, G:0.33, T:0.29 Consensus pattern (24 bp): GGACCTTTAGGTGATGGAATATCA Found at i:82496849 original size:27 final size:28 Alignment explanation
Indices: 82496802--82496854 Score: 65 Period size: 27 Copynumber: 1.9 Consensus size: 28 82496792 AAATAATCAC * * 82496802 AATTTCATTATTTATTAATTTGAATTTG 1 AATTTCATTATTTAATAATTTCAATTTG 82496830 AATTT-ATTATTATAAT-ATTTCAATT 1 AATTTCATTATT-TAATAATTTCAATT 82496855 ATAAAAATAA Statistics Matches: 22, Mismatches: 2, Indels: 3 0.81 0.07 0.11 Matches are distributed among these distances: 27 14 0.64 28 8 0.36 ACGTcount: A:0.36, C:0.04, G:0.04, T:0.57 Consensus pattern (28 bp): AATTTCATTATTTAATAATTTCAATTTG Found at i:82499329 original size:20 final size:20 Alignment explanation
Indices: 82499288--82499330 Score: 52 Period size: 20 Copynumber: 2.1 Consensus size: 20 82499278 ATTTTTGGCC * * 82499288 AAAAATCTATTTTATTATTT 1 AAAAATATATTTTATTAATT 82499308 AAAAATATA-TTTATATAATT 1 AAAAATATATTTTAT-TAATT 82499328 AAA 1 AAA 82499331 TTTTAATCAG Statistics Matches: 20, Mismatches: 2, Indels: 2 0.83 0.08 0.08 Matches are distributed among these distances: 19 5 0.25 20 15 0.75 ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47 Consensus pattern (20 bp): AAAAATATATTTTATTAATT Found at i:82500602 original size:21 final size:21 Alignment explanation
Indices: 82500578--82500617 Score: 55 Period size: 21 Copynumber: 1.9 Consensus size: 21 82500568 GTTTTAGCTG 82500578 CTGAAAT-GTTGGTTTTTTTGT 1 CTGAAATAGTT-GTTTTTTTGT * 82500599 CTGATATAGTTGTTTTTTT 1 CTGAAATAGTTGTTTTTTT 82500618 ATTGTATTGA Statistics Matches: 17, Mismatches: 1, Indels: 2 0.85 0.05 0.10 Matches are distributed among these distances: 21 14 0.82 22 3 0.18 ACGTcount: A:0.15, C:0.05, G:0.20, T:0.60 Consensus pattern (21 bp): CTGAAATAGTTGTTTTTTTGT Found at i:82505222 original size:216 final size:208 Alignment explanation
Indices: 82504829--82505225 Score: 460 Period size: 216 Copynumber: 1.9 Consensus size: 208 82504819 GCATTGAGAT * * 82504829 TTTAGGGGGATTTGGATAGGAGGTTGTCATTGGTGAAGTTTAATATGAATTTAATGGTTTTTGTA 1 TTTAGGGGGATTTGGATAGGAGGTTGTCATTGATGAAGTTTAATATGAATTTAATGCTTTTTGTA ** * * * * 82504894 TTGGAGTTCCAAAAATGAATTATCAACAGGTGATCAGAGACAGTGGCAGTGGACATCTCCCTAGG 66 TTGGAGTTCCAAAAACAAATTACCAACAGGTGATCAAAGACAGTGGCAGCGGACATCTCCCCAGG * ** * * ** 82504959 CATTTGGACTGAATTTGAATCTTGGAGTCGTCACTATTGGGAGGGCTTTACCTGAATACCACTCT 131 CATTTAGACTGAATTCAAATCTTAGAGTCATCACTATTGAAAGGGCTTTACCTGAATACCACTCT 82505024 GGCCTGAACAAGA 196 GGCCTGAACAAGA * * 82505037 TTTAGGGGGATTTGGATATGAGGGGTTGTCATTGATGAAGTTTATATTTGAATTTAATGCTTTTT 1 TTTAGGGGGATTTGGATA-G-GAGGTTGTCATTGATGAAGTTTA-ATATGAATTTAATGCTTTTT * * * 82505102 GTATTGGTGAAGTT-CAAAAGACAAATTACCAATAGGTGATCAAAAGA-AGTGGC-GCGGTTCTT 63 GTATT-G-G-AGTTCCAAAA-ACAAATTACCAACAGGTGATC-AAAGACAGTGGCAGCGG-ACAT * * 82505164 CTTCCCCCGGGCATTTAGA-TTAAGTTCAAATCTTAGAGTCATCACTATTGAAAGGGCTTTAC 122 C-T-CCCCAGGCATTTAGACTGAA-TTCAAATCTTAGAGTCATCACTATTGAAAGGGCTTTAC 82505226 TAAATACTAC Statistics Matches: 155, Mismatches: 22, Indels: 16 0.80 0.11 0.08 Matches are distributed among these distances: 208 18 0.12 209 1 0.01 210 21 0.14 211 23 0.15 212 1 0.01 213 9 0.06 214 30 0.19 215 8 0.05 216 44 0.28 ACGTcount: A:0.28, C:0.13, G:0.25, T:0.33 Consensus pattern (208 bp): TTTAGGGGGATTTGGATAGGAGGTTGTCATTGATGAAGTTTAATATGAATTTAATGCTTTTTGTA TTGGAGTTCCAAAAACAAATTACCAACAGGTGATCAAAGACAGTGGCAGCGGACATCTCCCCAGG CATTTAGACTGAATTCAAATCTTAGAGTCATCACTATTGAAAGGGCTTTACCTGAATACCACTCT GGCCTGAACAAGA Found at i:82512495 original size:22 final size:21 Alignment explanation
Indices: 82512451--82512502 Score: 59 Period size: 22 Copynumber: 2.4 Consensus size: 21 82512441 ATCATTTCTT * * 82512451 ATTTAATTATTTCATATTAAA 1 ATTTAAATATTTAATATTAAA * 82512472 ATTTAAATATTTAAATATTCAA 1 ATTTAAATATTT-AATATTAAA * 82512494 ATTAAAATA 1 ATTTAAATA 82512503 AACTAACTTA Statistics Matches: 26, Mismatches: 4, Indels: 1 0.84 0.13 0.03 Matches are distributed among these distances: 21 11 0.42 22 15 0.58 ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46 Consensus pattern (21 bp): ATTTAAATATTTAATATTAAA Found at i:82523329 original size:32 final size:30 Alignment explanation
Indices: 82523253--82523329 Score: 77 Period size: 32 Copynumber: 2.5 Consensus size: 30 82523243 GTACATTGGT * * 82523253 ACTTAGTT-GATCCTTAATTTTTTTTTTTTA 1 ACTTAGTTAG-TCCTTAATTTTATTTTGTTA * 82523283 ACTTAGTTGGTCCTTAAATTTATATTTTGTTA 1 ACTTAGTTAGTCCTT-AATTT-TATTTTGTTA 82523315 A-TTAAGTTAGTCCTT 1 ACTT-AGTTAGTCCTT 82523330 TGCACTAGCA Statistics Matches: 40, Mismatches: 3, Indels: 6 0.82 0.06 0.12 Matches are distributed among these distances: 30 13 0.32 31 8 0.20 32 19 0.47 ACGTcount: A:0.23, C:0.10, G:0.10, T:0.56 Consensus pattern (30 bp): ACTTAGTTAGTCCTTAATTTTATTTTGTTA Found at i:82523560 original size:32 final size:33 Alignment explanation
Indices: 82523524--82523593 Score: 81 Period size: 33 Copynumber: 2.2 Consensus size: 33 82523514 ATAATTTTGT * * * 82523524 AATTTTAATT-TTTTTATAAA-ATATCATTTTTA 1 AATTTTAATTATTTTGA-AAATATATAATTTATA * 82523556 AATTTTTATTATTTTGAAAATATATAATTTATA 1 AATTTTAATTATTTTGAAAATATATAATTTATA 82523589 AATTT 1 AATTT 82523594 ATAAAAATTA Statistics Matches: 32, Mismatches: 4, Indels: 3 0.82 0.10 0.08 Matches are distributed among these distances: 32 12 0.38 33 20 0.62 ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57 Consensus pattern (33 bp): AATTTTAATTATTTTGAAAATATATAATTTATA Found at i:82523684 original size:13 final size:13 Alignment explanation
Indices: 82523663--82523736 Score: 60 Period size: 13 Copynumber: 5.2 Consensus size: 13 82523653 AATTTATAAA * 82523663 ATTATAAATATAT 1 ATTAAAAATATAT 82523676 ATTAAAAATATATT 1 ATTAAAAATATA-T * 82523690 ATAAAAAATTATAAAT 1 ATTAAAAA-TAT--AT 82523706 AAATTAAAAATATAT 1 --ATTAAAAATATAT 82523721 ATTATAAAA-ATAT 1 ATTA-AAAATATAT 82523734 ATT 1 ATT 82523737 TTAATGGCTT Statistics Matches: 51, Mismatches: 3, Indels: 14 0.75 0.04 0.21 Matches are distributed among these distances: 13 22 0.43 14 12 0.24 15 5 0.10 16 1 0.02 17 4 0.08 18 7 0.14 ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39 Consensus pattern (13 bp): ATTAAAAATATAT Found at i:82523686 original size:11 final size:11 Alignment explanation
Indices: 82523667--82523720 Score: 58 Period size: 11 Copynumber: 5.0 Consensus size: 11 82523657 TATAAAATTA * 82523667 TAAATATATAT 1 TAAAAATATAT 82523678 TAAAAATATAT 1 TAAAAATATAT 82523689 TATAAAA-A-AT 1 TA-AAAATATAT * * 82523699 TATAAATAAAT 1 TAAAAATATAT 82523710 TAAAAATATAT 1 TAAAAATATAT 82523721 ATTATAAAAA Statistics Matches: 36, Mismatches: 4, Indels: 6 0.78 0.09 0.13 Matches are distributed among these distances: 9 3 0.08 10 5 0.14 11 24 0.67 12 4 0.11 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (11 bp): TAAAAATATAT Found at i:82523693 original size:32 final size:32 Alignment explanation
Indices: 82523656--82523734 Score: 106 Period size: 32 Copynumber: 2.4 Consensus size: 32 82523646 CCTTAGAAAT 82523656 TTATAAAATTATAAATATATATTAAAAATATAT- 1 TTATAAAATTATAAATA-A-ATTAAAAATATATA * 82523689 TATAAAAAATTATAAATAAATTAAAAATATATA 1 T-TATAAAATTATAAATAAATTAAAAATATATA * 82523722 TTATAAAAATATA 1 TTATAAAATTATA 82523735 TTTTAATGGC Statistics Matches: 41, Mismatches: 3, Indels: 5 0.84 0.06 0.10 Matches are distributed among these distances: 32 23 0.56 33 3 0.07 34 15 0.37 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (32 bp): TTATAAAATTATAAATAAATTAAAAATATATA Found at i:82523701 original size:34 final size:34 Alignment explanation
Indices: 82523660--82523730 Score: 101 Period size: 34 Copynumber: 2.1 Consensus size: 34 82523650 AGAAATTTAT * 82523660 AAAATTATAAATATATATT--AAAAATATATTATAA 1 AAAATTATAAATA-A-ATTAAAAATATATATTATAA 82523694 AAAATTATAAATAAATTAAAAATATATATTATAA 1 AAAATTATAAATAAATTAAAAATATATATTATAA 82523728 AAA 1 AAA 82523731 TATATTTTAA Statistics Matches: 34, Mismatches: 1, Indels: 4 0.87 0.03 0.10 Matches are distributed among these distances: 32 3 0.09 33 1 0.03 34 30 0.88 ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35 Consensus pattern (34 bp): AAAATTATAAATAAATTAAAAATATATATTATAA Found at i:82523705 original size:21 final size:20 Alignment explanation
Indices: 82523676--82523715 Score: 53 Period size: 21 Copynumber: 1.9 Consensus size: 20 82523666 ATAAATATAT * 82523676 ATTAAAAATATATTATAAAAA 1 ATTAAAAATAAATTA-AAAAA * 82523697 ATTATAAATAAATTAAAAA 1 ATTAAAAATAAATTAAAAA 82523716 TATATATTAT Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 20 4 0.24 21 13 0.76 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33 Consensus pattern (20 bp): ATTAAAAATAAATTAAAAAA Found at i:82523787 original size:15 final size:15 Alignment explanation
Indices: 82523763--82523794 Score: 55 Period size: 15 Copynumber: 2.1 Consensus size: 15 82523753 AAAATATTTT * 82523763 AAAATTTATATTATA 1 AAAATATATATTATA 82523778 AAAATATATATTATA 1 AAAATATATATTATA 82523793 AA 1 AA 82523795 TATTTTTTAT Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41 Consensus pattern (15 bp): AAAATATATATTATA Found at i:82523948 original size:15 final size:17 Alignment explanation
Indices: 82523908--82523945 Score: 60 Period size: 17 Copynumber: 2.3 Consensus size: 17 82523898 AATAGCAACT * 82523908 TAAAAATTGATATATTA 1 TAAAAATTAATATATTA 82523925 TAAAAATTAATATA-TA 1 TAAAAATTAATATATTA 82523941 TAAAA 1 TAAAA 82523946 TTACTACAAC Statistics Matches: 20, Mismatches: 1, Indels: 1 0.91 0.05 0.05 Matches are distributed among these distances: 16 7 0.35 17 13 0.65 ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37 Consensus pattern (17 bp): TAAAAATTAATATATTA Found at i:82525363 original size:19 final size:20 Alignment explanation
Indices: 82525321--82525365 Score: 56 Period size: 19 Copynumber: 2.2 Consensus size: 20 82525311 ATTATTATAG * * 82525321 AATATAAAAATTATGGAAATT 1 AATA-AAAAATTATGAAAAAT 82525342 AATAAAAAATTAT-AAAAAT 1 AATAAAAAATTATGAAAAAT 82525361 AATAA 1 AATAA 82525366 TATAATTTAT Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 19 9 0.41 20 9 0.41 21 4 0.18 ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29 Consensus pattern (20 bp): AATAAAAAATTATGAAAAAT Found at i:82525395 original size:18 final size:18 Alignment explanation
Indices: 82525372--82525407 Score: 63 Period size: 18 Copynumber: 2.0 Consensus size: 18 82525362 ATAATATAAT * 82525372 TTATAAAGCACTTTAAAA 1 TTATAAAGCACATTAAAA 82525390 TTATAAAGCACATTAAAA 1 TTATAAAGCACATTAAAA 82525408 GTGGTGATGA Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 18 17 1.00 ACGTcount: A:0.53, C:0.11, G:0.06, T:0.31 Consensus pattern (18 bp): TTATAAAGCACATTAAAA Found at i:82529494 original size:15 final size:16 Alignment explanation
Indices: 82529476--82529505 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 82529466 ATTTCATTTT 82529476 TTCTAT-TTTTATAAA 1 TTCTATATTTTATAAA 82529491 TTCTATATTTTATAA 1 TTCTATATTTTATAA 82529506 TAAATTTTAA Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 15 6 0.43 16 8 0.57 ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60 Consensus pattern (16 bp): TTCTATATTTTATAAA Found at i:82529672 original size:29 final size:29 Alignment explanation
Indices: 82529639--82529700 Score: 72 Period size: 29 Copynumber: 2.1 Consensus size: 29 82529629 ATTTTCAATC * * 82529639 TTTTATCATTTTTAATAATTTTATTGA-TA 1 TTTTATCAGTTTAAATAATTTTATT-ATTA * * 82529668 TTTTATGAGTTTAAATATTTTTATTATTA 1 TTTTATCAGTTTAAATAATTTTATTATTA 82529697 TTTT 1 TTTT 82529701 CCCCTATATA Statistics Matches: 28, Mismatches: 4, Indels: 2 0.82 0.12 0.06 Matches are distributed among these distances: 28 1 0.04 29 27 0.96 ACGTcount: A:0.29, C:0.02, G:0.05, T:0.65 Consensus pattern (29 bp): TTTTATCAGTTTAAATAATTTTATTATTA Done.