Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 287 of 292
Found at i:82855927 original size:71 final size:71
Alignment explanation
Indices: 82855692--82856233 Score: 624
Period size: 71 Copynumber: 7.5 Consensus size: 71
82855682 GTTTTCCAAG
* * *
82855692 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT-TA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTCTA
82855756 TGTTTCA
66 T-TTTCA
* * *
82855763 AAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTC-GGGCACGCTGAGGTAATTTCAATTCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATT-CT
* *
82855827 ATTAAATCT
65 ATT--TTCA
* * *
82855836 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT-TA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTCTA
82855900 TGTTTCA
66 T-TTTCA
* * **
82855907 AAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAATTCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATT-CT
* *
82855972 ATTAAATCT
65 ATT--TTCA
* * *
82855981 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT-TA
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTCTA
82856045 TGTTTCA
66 T-TTTCA
* * **
82856052 AAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCAATTCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATT-CT
* *
82856117 ATTAAATCT
65 ATT--TTCA
*** * *
82856126 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTC-AATTCT
82856191 ATTTTCA
65 ATTTTCA
* * * *
82856198 AAAGTTAATTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
82856234 TTAATTTTCG
Statistics
Matches: 400, Mismatches: 55, Indels: 31
0.82 0.11 0.06
Matches are distributed among these distances:
70 21 0.05
71 149 0.37
72 45 0.11
73 44 0.11
74 137 0.34
75 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTCTA
TTTTCA
Found at i:82856055 original size:145 final size:145
Alignment explanation
Indices: 82855692--82856229 Score: 927
Period size: 145 Copynumber: 3.7 Consensus size: 145
82855682 GTTTTCCAAG
82855692 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
82855757 GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTC-GGGCACGCTGAGGTAATTTCA
66 GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
82855821 ATTCCTATTAAATCT
131 ATTCCTATTAAATCT
82855836 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
82855901 GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
66 GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
82855966 ATTCCTATTAAATCT
131 ATTCCTATTAAATCT
82855981 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
82856046 GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
66 GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
82856111 ATTCCTATTAAATCT
131 ATTCCTATTAAATCT
* *** * * * *
82856126 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC-AATT-T
* * * * *
82856191 AT-TTTCAAAAGTTAATTCATATTGCGAGAGGTGAGTTGA
64 ATGTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGA
82856230 GCCTTTAATT
Statistics
Matches: 378, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
144 108 0.29
145 231 0.61
146 36 0.10
147 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (145 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTCAAAAATCAACTCATATCGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
ATTCCTATTAAATCT
Found at i:82856291 original size:67 final size:65
Alignment explanation
Indices: 82856179--82856435 Score: 293
Period size: 67 Copynumber: 3.8 Consensus size: 65
82856169 CGCTAAGGTA
* * *
82856179 TTTTCAAATTCTATTTTCAAAAGTTAATTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCG
1 TTTTCAAAATCTATTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCG
82856244 T
65 T
*
82856245 TTTTCAAAATCTACTTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTCC
1 TTTTCAAAATCTA-TTTTCAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTC
82856310 GT
64 GT
* *
82856312 TTTTCGAAATCTACTTTTCAAATTATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA-TT
1 TTTTCAAAATCTA-TTTTCAAA--ATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTAATTT
*
82856376 TCTGC
62 TC-GT
** * * **
82856381 TTTT-AATTTCTATGTTTCAAAAATCAACCCATATTGCGAAAAATGAGTTGAGCCT
1 TTTTCAAAATCTAT-TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
82856436 CAGTTCACCT
Statistics
Matches: 167, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
66 13 0.08
67 97 0.58
68 44 0.26
69 13 0.08
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (65 bp):
TTTTCAAAATCTATTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGT
Found at i:82856385 original size:13 final size:13
Alignment explanation
Indices: 82856367--82856391 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82856357 TGAGTTGAGC
82856367 CTTTTAATTTCTG
1 CTTTTAATTTCTG
82856380 CTTTTAATTTCT
1 CTTTTAATTTCT
82856392 ATGTTTCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.04, T:0.64
Consensus pattern (13 bp):
CTTTTAATTTCTG
Found at i:82856399 original size:135 final size:133
Alignment explanation
Indices: 82856179--82856435 Score: 335
Period size: 135 Copynumber: 1.9 Consensus size: 133
82856169 CGCTAAGGTA
*
82856179 TTTTCAAATTCTATTTTCAAAAGTTAATTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCG
1 TTTTCAAATTCTATTTTCAAAAGTTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCG
* * * * **
82856244 TTTTTCAAAATCTACTTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTC
66 CTTTTCAAAATCTACTTTTCAAAAATCAACCCATATTGCGAAAAATGAGTTGAGCCTTTAATTTC
82856309 CGT
131 CGT
82856312 TTTTCGAAA-TCTACTTTTCAAATTA-TTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA-
1 TTTTC-AAATTCTA-TTTTCAAA--AGTTAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTAAT
**
82856374 TTTCTGCTTTT-AATTTCTA-TGTTTCAAAAATCAACCCATATTGCGAAAAATGAGTTGAGCCT
61 TTTC-GCTTTTCAAAATCTACT-TTTCAAAAATCAACCCATATTGCGAAAAATGAGTTGAGCCT
82856436 CAGTTCACCT
Statistics
Matches: 108, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
133 9 0.08
134 12 0.11
135 76 0.70
136 11 0.10
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (133 bp):
TTTTCAAATTCTATTTTCAAAAGTTAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCG
CTTTTCAAAATCTACTTTTCAAAAATCAACCCATATTGCGAAAAATGAGTTGAGCCTTTAATTTC
CGT
Found at i:82857812 original size:22 final size:23
Alignment explanation
Indices: 82857787--82857831 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
82857777 CCGGAGCTCC
82857787 CTCTCCCTCTCCCCT-TTCTTTT
1 CTCTCCCTCTCCCCTCTTCTTTT
*
82857809 CTCTCCCTCTCCTCTCTTCTTTT
1 CTCTCCCTCTCCCCTCTTCTTTT
82857832 TTTTCTTCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (23 bp):
CTCTCCCTCTCCCCTCTTCTTTT
Found at i:82857843 original size:27 final size:28
Alignment explanation
Indices: 82857783--82857841 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
82857773 CCCACCGGAG
82857783 CTCCCTCTCCCTCTCCCCTTTCTTTTCT
1 CTCCCTCTCCCTCTCCCCTTTCTTTTCT
** *
82857811 CTCCCTCT-CCTCTCTTCTTTTTTTTCT
1 CTCCCTCTCCCTCTCCCCTTTCTTTTCT
82857838 -TCCC
1 CTCCC
82857842 CTTCTCAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.14
27 16 0.57
28 8 0.29
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (28 bp):
CTCCCTCTCCCTCTCCCCTTTCTTTTCT
Found at i:82858620 original size:20 final size:20
Alignment explanation
Indices: 82858595--82858646 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 20
82858585 TTTCTTTTTC
82858595 ATATTATTATTATAATATAT
1 ATATTATTATTATAATATAT
* *
82858615 ATATTA-TA-TAT-TTATGT
1 ATATTATTATTATAATATAT
82858632 ATATTATTATATATA
1 ATATTATTAT-TATA
82858647 TTTTTAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
17 10 0.38
18 5 0.19
19 2 0.08
20 9 0.35
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (20 bp):
ATATTATTATTATAATATAT
Found at i:82858637 original size:31 final size:30
Alignment explanation
Indices: 82858602--82858663 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
82858592 TTCATATTAT
82858602 TATTATAATATATATATTATATAT-TTATGTA
1 TATTATAATATATAT-TTATA-ATGTTATGTA
* *
82858633 TATTATTATATATATTTTTAATGTTATGTA
1 TATTATAATATATATTTATAATGTTATGTA
82858663 T
1 T
82858664 TGTATATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 2 0.07
30 12 0.43
31 14 0.50
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (30 bp):
TATTATAATATATATTTATAATGTTATGTA
Found at i:82858656 original size:25 final size:24
Alignment explanation
Indices: 82858601--82858670 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 24
82858591 TTTCATATTA
*
82858601 TTAT-TATAATATATATATTATATAT
1 TTATGTATATTAT-TATA-TATATAT
*
82858626 TTATGTATATTATTATATATATTT
1 TTATGTATATTATTATATATATAT
*
82858650 TTAATGT-TATGTATTGTATAT
1 TT-ATGTATAT-TATTATATAT
82858671 TTCTTACTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
24 11 0.28
25 21 0.54
26 7 0.18
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.59
Consensus pattern (24 bp):
TTATGTATATTATTATATATATAT
Found at i:82858686 original size:23 final size:23
Alignment explanation
Indices: 82858643--82858686 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
82858633 TATTATTATA
*
82858643 TATATTTTTAATGTTATGTATTG
1 TATATTTTTAATGTTACGTATTG
*
82858666 TATATTTCTTACTGTT-CGTAT
1 TATATTT-TTAATGTTACGTAT
82858687 ACTTTTACGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.23, C:0.07, G:0.11, T:0.59
Consensus pattern (23 bp):
TATATTTTTAATGTTACGTATTG
Found at i:82858859 original size:2 final size:2
Alignment explanation
Indices: 82858826--82858850 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
82858816 TATCTTTAAC
82858826 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
82858851 GGCATATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82859113 original size:4 final size:4
Alignment explanation
Indices: 82859106--82859137 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
82859096 TTGTTAATAC
82859106 ATTT ATTT ATTT ATTT ATTT ATTT -TTT -TTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
82859138 ATATACGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 6 0.22
4 21 0.78
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
ATTT
Found at i:82860906 original size:17 final size:16
Alignment explanation
Indices: 82860880--82860920 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
82860870 ATATCGTACA
*
82860880 TATTTTTATTACATTT
1 TATTTTTATTACATAT
*
82860896 TATTATTTATTATATAT
1 TATT-TTTATTACATAT
82860913 TATTTTTA
1 TATTTTTA
82860921 AATATGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTTTATTACATAT
Found at i:82866648 original size:17 final size:19
Alignment explanation
Indices: 82866614--82866650 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
82866604 CTATATTATG
*
82866614 TTTTAAATATATATTATTT
1 TTTTAAATATATAATATTT
82866633 TTTTAAA-AT-TAATATTT
1 TTTTAAATATATAATATTT
82866650 T
1 T
82866651 AGATGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 2 0.12
19 7 0.41
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTAAATATATAATATTT
Found at i:82877985 original size:3 final size:3
Alignment explanation
Indices: 82877979--82878202 Score: 104
Period size: 3 Copynumber: 74.3 Consensus size: 3
82877969 AAAATACAAC
* * *
82877979 AAT AAT AAT AGT AA- AAG ATAT AAT AACCT AAT AAT -AT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AA--T AAT AAT AAT AAT AAT AAT
* * * * * * * *
82878025 AGT AAC AAT -AT GAC GAT AAT AGT AAA AAT AAT -AT ATT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
* *
82878069 AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -CT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
82878116 ATT AAGT TAT AAT GAA- AAT AAT GAT AAT GAT GAT -AT ATT AGAT AAT
1 AAT AA-T AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* * * *
82878162 AAT AGT AA- AAT AAT AAGT AAC AAT GAT AAAT TAT AAT AAT A
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT -AAT AAT AAT AAT A
82878203 GTGATGAGAA
Statistics
Matches: 166, Mismatches: 38, Indels: 34
0.70 0.16 0.14
Matches are distributed among these distances:
2 15 0.09
3 133 0.80
4 15 0.09
5 3 0.02
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:82877985 original size:22 final size:22
Alignment explanation
Indices: 82877934--82877994 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
82877924 ATAAGTAAAT
* *
82877934 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
82877955 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
82877977 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
82877995 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:82878223 original size:16 final size:16
Alignment explanation
Indices: 82878202--82878233 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82878192 TTATAATAAT
82878202 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
82878218 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
82878234 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:82878483 original size:3 final size:3
Alignment explanation
Indices: 82878475--82878517 Score: 77
Period size: 3 Copynumber: 14.0 Consensus size: 3
82878465 CTACCATATT
82878475 ATA ATA ATA ATA ATA ATAA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
82878518 TAGAAATACA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:82878624 original size:3 final size:3
Alignment explanation
Indices: 82878612--82878665 Score: 94
Period size: 3 Copynumber: 18.7 Consensus size: 3
82878602 AAATATACAC
82878612 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
82878658 TAA TAA TA
1 TAA TAA TA
82878666 TTAAAATGCA
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 4 0.08
3 45 0.92
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:82878631 original size:29 final size:28
Alignment explanation
Indices: 82878599--82878666 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 28
82878589 ATATATGTAC
82878599 ATAA-AATATACACTAATATAATAATAATA
1 ATAATAATATA-A-TAATATAATAATAATA
82878628 ATAATAATAATAATAATATAATAATAATA
1 ATAATAAT-ATAATAATATAATAATAATA
82878657 ATAATAATAT
1 ATAATAATAT
82878667 TAAAATGCAG
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
28 2 0.05
29 28 0.76
30 4 0.11
31 3 0.08
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAATAATATAATAATATAATAATAATA
Found at i:82879191 original size:25 final size:26
Alignment explanation
Indices: 82879135--82879204 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
82879125 AATCTCAAAA
* * *
82879135 AAAAAGAAAAATCCCCTATTGAATCTC
1 AAAAA-AAAAATCTCTTCTTGAATCTC
82879162 AAAAAAAAAATCTCTTCTTGAATCTC
1 AAAAAAAAAATCTCTTCTTGAATCTC
82879188 -AAAAAAAAATCTCTTCT
1 AAAAAAAAAATCTCTTCT
82879205 CTCCAAAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.43
26 18 0.45
27 5 0.12
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (26 bp):
AAAAAAAAAATCTCTTCTTGAATCTC
Found at i:82879703 original size:44 final size:44
Alignment explanation
Indices: 82879639--82879838 Score: 178
Period size: 44 Copynumber: 4.6 Consensus size: 44
82879629 TGAGTTCTTG
* *
82879639 ATCTGCT-TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
82879682 ATCTGTTATCTTCAA-CTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
82879724 ATGCTGAAATCTTCGATCTGCTTCACC-GTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTC-CCTATAAGCACAGGGATGCCAA
* *
82879770 TTCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
82879814 ATCTGCTGTTTTCAA-CTTGTTCCCT
1 ATCTGCTATCTTCAATC-TGTTCCCT
82879839 GACAATACGG
Statistics
Matches: 125, Mismatches: 22, Indels: 19
0.75 0.13 0.11
Matches are distributed among these distances:
42 2 0.02
43 22 0.18
44 83 0.66
45 17 0.14
46 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:82880554 original size:205 final size:205
Alignment explanation
Indices: 82879978--82881079 Score: 1848
Period size: 205 Copynumber: 5.4 Consensus size: 205
82879968 GGGAACATCC
* * * * * *
82879978 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATATTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * * * * ** *
82880043 ATCTTGCTTCAGT-ATAAACATCTGAAGGTTAGATCTGCTATATATCTACTCTCCATTGAAGTGG
66 ATC-TGCTTCAGTGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
* *
82880107 AGATGCCAGACTTTGATTTGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCA
129 AGATGCCAAACTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCA
82880172 TCGTAATCACGT
194 TCGTAATCACGT
* * * *
82880184 GAAAGCCAAATCAGCTATGTCTTCGATTAGCTCCTTATAAGCACAAGGATGCCAAATCATCTT-G
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
*
82880248 ATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
66 ATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
* *
82880313 ATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
131 ATGCCAAACTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
82880378 GTAATCACGT
196 GTAATCACGT
*
82880388 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
*
82880453 ATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTTTCCATCAAAGTGAAG
66 ATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
*
82880518 ATGCCAAACTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGTTTCATC
131 ATGCCAAACTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
82880583 GTAATCACGT
196 GTAATCACGT
* *
82880593 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTCG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * *
82880658 ATCTGCTTCAGTGAAATCATCTGGATGTGAGATCTGCTATGTGTCTGCTTTCCATCAAAGTGAAG
66 ATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
82880723 ATGCCAAACTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
131 ATGCCAAACTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
82880788 GTAATCACGT
196 GTAATCACGT
82880798 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
82880863 ATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
66 ATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
* *
82880928 ATGCCAAACTTCGATTTGTTTTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
131 ATGCCAAACTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
82880993 GTAATCACGT
196 GTAATCACGT
* * *
82881003 GAAAGCCAAATCAGCTATATCTTTGATTTGCTCCTTGTAAACATAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
82881068 ATCTGCTTCAGT
66 ATCTGCTTCAGT
82881080 ATAACATCTG
Statistics
Matches: 851, Mismatches: 43, Indels: 5
0.95 0.05 0.01
Matches are distributed among these distances:
204 180 0.21
205 614 0.72
206 57 0.07
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (205 bp):
GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
ATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAG
ATGCCAAACTTTGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATC
GTAATCACGT
Found at i:82888985 original size:13 final size:15
Alignment explanation
Indices: 82888955--82888985 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
82888945 TTCCAGATTT
82888955 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
82888970 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
82888985 T
1 T
82888986 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:82892917 original size:22 final size:22
Alignment explanation
Indices: 82892885--82892959 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 22
82892875 TAAATACAAA
82892885 AATAA-AG-AAAATATAATAAC
1 AATAATAGAAAAATATAATAAC
* * *
82892905 AATAATAGAAAAATACAACAAT
1 AATAATAGAAAAATATAATAAC
82892927 AATAATAGTAAAAGATATAATAACC
1 AATAATAG-AAAA-ATATAATAA-C
82892952 TAATAATA
1 -AATAATA
82892960 TAATAGTAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
20 5 0.12
21 2 0.05
22 18 0.42
23 4 0.09
24 7 0.16
26 7 0.16
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (22 bp):
AATAATAGAAAAATATAATAAC
Found at i:82893039 original size:3 final size:3
Alignment explanation
Indices: 82893031--82893156 Score: 80
Period size: 3 Copynumber: 41.7 Consensus size: 3
82893021 AAAGTAGTGC
* * *
82893031 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-C TAT TAA GTTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
* * * * *
82893079 TAA TGAA -AA TAA TGA TAA TGA TGA T-A TAT TAGA TAA TAA TAG TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA
* * *
82893124 -AA TAA TAA GTAA CAA TGA TAAA TTA TAA TAA TA
1 TAA TAA TAA -TAA TAA TAA T-AA TAA TAA TAA TA
82893157 GTGATGAGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
2 7 0.07
3 78 0.81
4 11 0.11
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:82893177 original size:16 final size:16
Alignment explanation
Indices: 82893156--82893187 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82893146 TTATAATAAT
82893156 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
82893172 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
82893188 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:82893319 original size:16 final size:15
Alignment explanation
Indices: 82893290--82893332 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
82893280 TATACGTATG
*
82893290 AAAAATAATGATAGT
1 AAAAATAATAATAGT
82893305 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
82893321 AATAATAATAAT
1 AAAAATAATAAT
82893333 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:82893438 original size:3 final size:3
Alignment explanation
Indices: 82893430--82893465 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
82893420 CTACCATATT
82893430 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
82893466 TACAAATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:82893575 original size:3 final size:3
Alignment explanation
Indices: 82893561--82893617 Score: 96
Period size: 3 Copynumber: 18.7 Consensus size: 3
82893551 AAATATACAC
82893561 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
82893607 TAA TAT TAA TA
1 TAA TAA TAA TA
82893618 TTAAAATGCA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:82894160 original size:27 final size:27
Alignment explanation
Indices: 82894090--82894153 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
82894080 TCTTAAAAAA
* * *
82894090 AAAAAAGAAAAATCCCCTATTGAATCTC
1 AAAAAA-AAAAATCTCTTCTTGAATCTC
82894118 AAAAAAAAAAATCTCTTCTTGAATCTC
1 AAAAAAAAAAATCTCTTCTTGAATCTC
*
82894145 ATAAAAAAA
1 AAAAAAAAA
82894154 TCTCTCTCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 26 0.81
28 6 0.19
ACGTcount: A:0.55, C:0.17, G:0.05, T:0.23
Consensus pattern (27 bp):
AAAAAAAAAAATCTCTTCTTGAATCTC
Found at i:82903761 original size:48 final size:48
Alignment explanation
Indices: 82903651--82903930 Score: 314
Period size: 48 Copynumber: 5.8 Consensus size: 48
82903641 TGAGATTCAA
* * *
82903651 TGTAAGTCCATGTCTGGGGCATGGCATCGGC-ATCCGAGA-AGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GATATA-TGTGCCAG
* * * * * *
82903700 TGAAAGACCATGTCTAGGATATAGTATCGGCGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
* *
82903748 TGTAAGACTATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
** * *
82903796 TGTAAGACCATGTCTGGGACATGGCATCAACAATAATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
* * *
82903844 TGTAAGACCATGTCTGGGACATGGAATCGGTGATTATATATGTGCC-G
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
* * *
82903891 TTATAAGACCATGTTTGGGACATGGCATTGGCGATGATAT
1 -TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
82903931 TTGGATTCAT
Statistics
Matches: 195, Mismatches: 33, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
47 1 0.01
48 167 0.86
49 25 0.13
50 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
Found at i:82903944 original size:144 final size:144
Alignment explanation
Indices: 82903692--82903954 Score: 350
Period size: 144 Copynumber: 1.8 Consensus size: 144
82903682 ATCCGAGAAG
* * * *
82903692 TGTGCCAGTGAAAGACCATGTCTAGGATATAGTATCGGCGATGATATATGTGCCTGTGTAAGACT
1 TGTGCCAGTGAAAGACCATGTCTAGGACATAGAATCGGCGATGATATATGTGCCTGTATAAGACC
* * *
82903757 ATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCA
66 ATGTCTGGGACATGGCATCGGCGATGATATATGTGACTATGTAAAACCATGTCTGGGACATGGCA
82903822 TCAACAATAATATA
131 TCAACAATAATATA
* * * * *
82903836 TGTGCCAGTGTAAGACCATGTCTGGGACATGGAATCGGTGATTATATATGTGCC-GTTATAAGAC
1 TGTGCCAGTGAAAGACCATGTCTAGGACATAGAATCGGCGATGATATATGTGCCTG-TATAAGAC
* * * *
82903900 CATGTTTGGGACATGGCATTGGCGATGATATTTG-GATTCATGTAAAACCATGTCT
65 CATGTCTGGGACATGGCATCGGCGATGATATATGTGACT-ATGTAAAACCATGTCT
82903955 AAGAAATGGC
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
143 3 0.03
144 98 0.97
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (144 bp):
TGTGCCAGTGAAAGACCATGTCTAGGACATAGAATCGGCGATGATATATGTGCCTGTATAAGACC
ATGTCTGGGACATGGCATCGGCGATGATATATGTGACTATGTAAAACCATGTCTGGGACATGGCA
TCAACAATAATATA
Found at i:82912510 original size:26 final size:24
Alignment explanation
Indices: 82912469--82912527 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
82912459 TTATTTCATT
* *
82912469 AAATAAA-AAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
82912492 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
82912518 AAATAAATAT
1 AAATAAATAT
82912528 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.32
25 7 0.23
26 14 0.45
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:82912539 original size:22 final size:22
Alignment explanation
Indices: 82912498--82912556 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
82912488 ATAATAAATC
* *
82912498 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
82912518 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
82912540 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
82912557 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:82912633 original size:15 final size:16
Alignment explanation
Indices: 82912603--82912635 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
82912593 AAATAGTTAT
82912603 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
82912620 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
82912635 A
1 A
82912636 AATAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:82919041 original size:26 final size:27
Alignment explanation
Indices: 82918983--82919053 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 27
82918973 TGTCGTTTAC
** *
82918983 ATAATTAAAATAT-AAAATAGTATATT
1 ATAATTAAAATATAAAAATAAAACATT
*
82919009 ATGATTAAAATATAAAAATAAAACATT
1 ATAATTAAAATATAAAAATAAAACATT
82919036 A-AATTAAAAT-TGAAAAAT
1 ATAATTAAAATAT-AAAAAT
82919054 CATATTGATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 1 0.03
26 26 0.68
27 11 0.29
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (27 bp):
ATAATTAAAATATAAAAATAAAACATT
Found at i:82919214 original size:17 final size:18
Alignment explanation
Indices: 82919179--82919217 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
82919169 AAAATCCAAC
82919179 TAAATAAAAAAATGAAATT
1 TAAATAAAAAAAT-AAATT
* *
82919198 TAAATAAAAAGATAATTT
1 TAAATAAAAAAATAAATT
82919216 TA
1 TA
82919218 TTTTTTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (18 bp):
TAAATAAAAAAATAAATT
Found at i:82927655 original size:22 final size:23
Alignment explanation
Indices: 82927630--82927672 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
82927620 AAATAATAAT
* *
82927630 AATTT-AAGAATTAAATTTAAAG
1 AATTTAAAGAATAAAACTTAAAG
82927652 AATTTAAAGAATAAAACTTAA
1 AATTTAAAGAATAAAACTTAA
82927673 TTCAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (23 bp):
AATTTAAAGAATAAAACTTAAAG
Found at i:82931229 original size:17 final size:17
Alignment explanation
Indices: 82931204--82931236 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
82931194 TTTATGTCCG
82931204 TTTTATAGTTTATAATT
1 TTTTATAGTTTATAATT
*
82931221 TTTTGTAGTTTATAAT
1 TTTTATAGTTTATAAT
82931237 CATCCCTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (17 bp):
TTTTATAGTTTATAATT
Found at i:82931810 original size:14 final size:14
Alignment explanation
Indices: 82931791--82931817 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
82931781 TTTCAGCTCC
82931791 GTTTGATTTAATTT
1 GTTTGATTTAATTT
82931805 GTTTGATTTAATT
1 GTTTGATTTAATT
82931818 GTTAAATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.15, T:0.63
Consensus pattern (14 bp):
GTTTGATTTAATTT
Found at i:82934379 original size:2 final size:2
Alignment explanation
Indices: 82934372--82934397 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
82934362 AGAAAGGAGA
82934372 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
82934398 GTTTCTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82939892 original size:26 final size:26
Alignment explanation
Indices: 82939862--82939969 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82939852 TGAAATGCCC
82939862 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
82939888 ATCATGGAACATTTACATAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
82939914 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
82939940 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
82939966 ATCA
1 ATCA
82939970 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:82941074 original size:2 final size:2
Alignment explanation
Indices: 82941067--82941098 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
82941057 TTACTTGTTT
82941067 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
82941099 ATAACATTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:82941425 original size:3 final size:3
Alignment explanation
Indices: 82941413--82941446 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
82941403 ATATAAAACC
*
82941413 ATA ATAA ATA ATA ATA ATA AGA ATA ATA ATA ATA
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
82941447 TACATATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:82948839 original size:19 final size:19
Alignment explanation
Indices: 82948797--82948839 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
82948787 TTTTAATGTA
82948797 TATTTTTAAAATTTTAAAT
1 TATTTTTAAAATTTTAAAT
* ** *
82948816 AATTTTTATTATTTTTAAT
1 TATTTTTAAAATTTTAAAT
82948835 TATTT
1 TATTT
82948840 ATTTAATTAT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TATTTTTAAAATTTTAAAT
Found at i:82967873 original size:18 final size:18
Alignment explanation
Indices: 82967846--82967888 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
82967836 ATTTTCAGAT
82967846 ATTTA-AAAAATTTTAAAA
1 ATTTATAAAAA-TTTAAAA
*
82967864 ATTTATAAAAATTTCAAA
1 ATTTATAAAAATTTAAAA
82967882 ATTTATA
1 ATTTATA
82967889 TTTTTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTTATAAAAATTTAAAA
Found at i:82976256 original size:13 final size:13
Alignment explanation
Indices: 82976218--82976257 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
82976208 ACATAAGATC
82976218 AATTACTTGATTA
1 AATTACTTGATTA
* *
82976231 AATTATTTTATTA
1 AATTACTTGATTA
*
82976244 AATTACCTGATTA
1 AATTACTTGATTA
82976257 A
1 A
82976258 TTTAACTATT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.47
Consensus pattern (13 bp):
AATTACTTGATTA
Found at i:82982048 original size:3 final size:3
Alignment explanation
Indices: 82982040--82982073 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
82982030 AACTTAACAC
82982040 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
82982074 ATAACTGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:82986698 original size:27 final size:27
Alignment explanation
Indices: 82986660--82986715 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
82986650 CTAGTTTGCG
82986660 TTGCCTTTAATATTTTTTTATAAACTA
1 TTGCCTTTAATATTTTTTTATAAACTA
82986687 TTGCCTTTAATATTTTTTTATAAACTA
1 TTGCCTTTAATATTTTTTTATAAACTA
82986714 TT
1 TT
82986716 TTAATATTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.11, G:0.04, T:0.57
Consensus pattern (27 bp):
TTGCCTTTAATATTTTTTTATAAACTA
Found at i:82993122 original size:15 final size:15
Alignment explanation
Indices: 82993101--82993142 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
82993091 AAAAAGTAAA
*
82993101 AAAAATTAAATTTGC
1 AAAAATTAAATTTAC
*
82993116 TAAAATTAAATTTAC
1 AAAAATTAAATTTAC
*
82993131 AAAAACTAAATT
1 AAAAATTAAATT
82993143 GAAATTTGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (15 bp):
AAAAATTAAATTTAC
Found at i:82995727 original size:4 final size:4
Alignment explanation
Indices: 82995718--82995762 Score: 90
Period size: 4 Copynumber: 11.2 Consensus size: 4
82995708 TATCTAGTGG
82995718 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
82995763 ATTCAAGTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:82999560 original size:18 final size:19
Alignment explanation
Indices: 82999537--82999579 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
82999527 ATATATTCTC
82999537 ATTATTATCATT-ACTTTT
1 ATTATTATCATTAACTTTT
* *
82999555 ATTATTATTATTAATTTTT
1 ATTATTATCATTAACTTTT
82999574 ATTATT
1 ATTATT
82999580 TGACGTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTATTATCATTAACTTTT
Found at i:82999693 original size:24 final size:23
Alignment explanation
Indices: 82999649--82999705 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 23
82999639 TTTTACTTAT
* *
82999649 TTTCTTATTACTTAGTTATTTACG
1 TTTCTTATTACTCAGTAATTT-CG
82999673 TTTCTTATTCACTCA-TAATTTCG
1 TTTCTTATT-ACTCAGTAATTTCG
*
82999696 -TTATTATTAC
1 TTTCTTATTAC
82999706 GTATAAGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 2 0.07
22 7 0.24
23 2 0.07
24 14 0.48
25 4 0.14
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (23 bp):
TTTCTTATTACTCAGTAATTTCG
Found at i:83001436 original size:33 final size:34
Alignment explanation
Indices: 83001380--83001459 Score: 126
Period size: 33 Copynumber: 2.4 Consensus size: 34
83001370 TATAAATTGT
*
83001380 CAAAATAATATGTCTAAAGGTTATTGCATCCATCA
1 CAAAAGAATAT-TCTAAAGGTTATTGCATCCATCA
*
83001415 CAAAAGAATATT-TAAAGGTTATTGTATCCATCA
1 CAAAAGAATATTCTAAAGGTTATTGCATCCATCA
83001448 CAAAAGAATATT
1 CAAAAGAATATT
83001460 ATATCTTTTC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
33 32 0.74
34 1 0.02
35 10 0.23
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (34 bp):
CAAAAGAATATTCTAAAGGTTATTGCATCCATCA
Found at i:83002054 original size:25 final size:25
Alignment explanation
Indices: 83002020--83002081 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
83002010 GGCTATTCTT
*
83002020 ATTAAGTTTGTAAATACATCTAACA
1 ATTAACTTTGTAAATACATCTAACA
83002045 ATTAACTTTGTAAATACATCTAACA
1 ATTAACTTTGTAAATACATCTAACA
83002070 ATTAAC-TTGTAA
1 ATTAACTTTGTAA
83002082 TGATTTATCT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 6 0.17
25 30 0.83
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (25 bp):
ATTAACTTTGTAAATACATCTAACA
Found at i:83007600 original size:23 final size:22
Alignment explanation
Indices: 83007528--83007615 Score: 92
Period size: 21 Copynumber: 4.1 Consensus size: 22
83007518 TACCTGATCA
*
83007528 GAATACGACACATAA-GTGCCT
1 GAATACGACACACAAGGTGCCT
*
83007549 GAA-ACGACACACGAGGTGCCT
1 GAATACGACACACAAGGTGCCT
* *
83007570 G-CTGCGACACACAAGGTGCCT
1 GAATACGACACACAAGGTGCCT
* *
83007591 GAAATACGACACATAAAGTGCCT
1 G-AATACGACACACAAGGTGCCT
83007614 GA
1 GA
83007616 TCAGTAAAGC
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
20 9 0.17
21 27 0.50
22 1 0.02
23 17 0.31
ACGTcount: A:0.35, C:0.26, G:0.24, T:0.15
Consensus pattern (22 bp):
GAATACGACACACAAGGTGCCT
Found at i:83007612 original size:44 final size:41
Alignment explanation
Indices: 83007533--83007614 Score: 101
Period size: 44 Copynumber: 1.9 Consensus size: 41
83007523 GATCAGAATA
* * *
83007533 CGACACATAAGTGCCTGAAACGACACACGAGGTGCCTGCTG
1 CGACACACAAGTGCCTGAAACGACACACAAAGTGCCTGCTG
*
83007574 CGACACACAAGGTGCCTGAAATACGACACATAAAGTGCCTG
1 CGACACACAA-GTGCCTG-AA-ACGACACACAAAGTGCCTG
83007615 ATCAGTAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 9 0.26
42 7 0.21
43 2 0.06
44 16 0.47
ACGTcount: A:0.33, C:0.28, G:0.24, T:0.15
Consensus pattern (41 bp):
CGACACACAAGTGCCTGAAACGACACACAAAGTGCCTGCTG
Found at i:83007832 original size:23 final size:24
Alignment explanation
Indices: 83007806--83007900 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 24
83007796 AAATGTCCAA
83007806 CCAAAACACACCAG-TATAATCCT
1 CCAAAACACACCAGATATAATCCT
83007829 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG----ATATAATCCT
*
83007857 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG----ATATAATCC-T
83007886 CCAAAACACACCAGA
1 CCAAAACACACCAGA
83007901 ATAGCACAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
23 14 0.23
25 1 0.02
28 33 0.53
29 14 0.23
ACGTcount: A:0.46, C:0.34, G:0.04, T:0.16
Consensus pattern (24 bp):
CCAAAACACACCAGATATAATCCT
Found at i:83007902 original size:29 final size:28
Alignment explanation
Indices: 83007820--83007903 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
83007810 AACACACCAG
* *
83007820 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
83007848 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
83007876 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
83007904 GCACAAAGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.46, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:83012598 original size:29 final size:30
Alignment explanation
Indices: 83012552--83012613 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
83012542 TGGGACAAAA
*
83012552 TTGATTTAATGTGTAATTTTATACATGAAAT
1 TTGATTT-ATGTGCAATTTTATACATGAAAT
*
83012583 TTGATTT-TGTGCAATTTTATATATGAAAT
1 TTGATTTATGTGCAATTTTATACATGAAAT
83012612 TT
1 TT
83012614 TAATTTGATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 22 0.76
31 7 0.24
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.52
Consensus pattern (30 bp):
TTGATTTATGTGCAATTTTATACATGAAAT
Found at i:83012620 original size:29 final size:29
Alignment explanation
Indices: 83012561--83012620 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
83012551 ATTGATTTAA
* *
83012561 TGTGTAATTTTATACATGAAATTTGATTT
1 TGTGCAATTTTATACATGAAATTTGAATT
* *
83012590 TGTGCAATTTTATATATGAAATTTTAATT
1 TGTGCAATTTTATACATGAAATTTGAATT
83012619 TG
1 TG
83012621 ATCTAATTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.52
Consensus pattern (29 bp):
TGTGCAATTTTATACATGAAATTTGAATT
Found at i:83015369 original size:31 final size:29
Alignment explanation
Indices: 83015324--83015386 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
83015314 CCAACATTTT
* * *
83015324 TTTAATTATTATTTTATATATTAAATAAAAA
1 TTTAAGTATAATTTTA-AAATT-AATAAAAA
*
83015355 TTTAAGTATAATTTTAAAATTTATAAAAA
1 TTTAAGTATAATTTTAAAATTAATAAAAA
83015384 TTT
1 TTT
83015387 TAAAAATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 10 0.36
30 4 0.14
31 14 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (29 bp):
TTTAAGTATAATTTTAAAATTAATAAAAA
Found at i:83015732 original size:23 final size:24
Alignment explanation
Indices: 83015706--83015750 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
83015696 TAGGAATACC
*
83015706 TCATCTAA-ATATT-TTAGTATTTA
1 TCATATAACATATTGTTA-TATTTA
83015729 TCATATAACATATTGTTATATT
1 TCATATAACATATTGTTATATT
83015751 ATTCTATCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 9 0.47
25 3 0.16
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (24 bp):
TCATATAACATATTGTTATATTTA
Found at i:83016847 original size:17 final size:17
Alignment explanation
Indices: 83016825--83016880 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
83016815 CCTAAAGGTG
83016825 TTAAATTGCCTTGTATC
1 TTAAATTGCCTTGTATC
***
83016842 TTAAATTG-GGGGTAT-
1 TTAAATTGCCTTGTATC
83016857 TTAAATTGCCTTGTATC
1 TTAAATTGCCTTGTATC
83016874 TTAAATT
1 TTAAATT
83016881 TAGGGTATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
15 8 0.26
16 8 0.26
17 15 0.48
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (17 bp):
TTAAATTGCCTTGTATC
Found at i:83016866 original size:32 final size:32
Alignment explanation
Indices: 83016825--83016893 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
83016815 CCTAAAGGTG
*
83016825 TTAAATTGCCTTGTATCTTAAATTGGGGGTAT
1 TTAAATTGCCTTGTATCTTAAATTGAGGGTAT
*
83016857 TTAAATTGCCTTGTATCTTAAATTTAGGGTAT
1 TTAAATTGCCTTGTATCTTAAATTGAGGGTAT
83016889 TTAAA
1 TTAAA
83016894 GTGAAATTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.45
Consensus pattern (32 bp):
TTAAATTGCCTTGTATCTTAAATTGAGGGTAT
Found at i:83017997 original size:46 final size:46
Alignment explanation
Indices: 83017945--83018120 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
83017935 TGGTTGAGCA
83017945 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
83017991 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
83018036 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83018084 CCCGAGCTCGTTGAGTTGAATCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83018121 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83018101 original size:93 final size:93
Alignment explanation
Indices: 83017942--83018112 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
83017932 GGATGGTTGA
* **
83017942 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
* *
83018007 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAATCCGAGTTCGTGAGATGTAACTAG
* * *
83018035 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83018100 TGAATCCGAGTTC
66 TGAATCCGAGTTC
83018113 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAATCCGAGTTCGTGAGATGTAACTAG
Found at i:83025641 original size:10 final size:11
Alignment explanation
Indices: 83025625--83025664 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
83025615 TGACCTTTCC
83025625 AAGGTATGGG-
1 AAGGTATGGGA
*
83025635 TAGGTATGGGA
1 AAGGTATGGGA
*
83025646 AAGGTATGGGC
1 AAGGTATGGGA
83025657 AAGGTATG
1 AAGGTATG
83025665 CGGTATATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.30, C:0.03, G:0.45, T:0.23
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:83030329 original size:11 final size:11
Alignment explanation
Indices: 83030300--83030341 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
83030290 TGACCTTTCC
83030300 AAGGTATGGG-
1 AAGGTATGGGA
*
83030310 CAGGTATGGGA
1 AAGGTATGGGA
* *
83030321 AATGTATGGGC
1 AAGGTATGGGA
83030332 AAGGTATGGG
1 AAGGTATGGG
83030342 GTATATTCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.29, C:0.05, G:0.45, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:83033189 original size:20 final size:20
Alignment explanation
Indices: 83033166--83033213 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
83033156 AAATCCAAAT
*
83033166 TAAAATATTGAAATTCAGGA
1 TAAAATATTGAAATTCAAGA
*
83033186 TAAAATTTTGAAATTCAAGA
1 TAAAATATTGAAATTCAAGA
83033206 TAAGAATA
1 TAA-AATA
83033214 CTGATGTGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.52, C:0.04, G:0.12, T:0.31
Consensus pattern (20 bp):
TAAAATATTGAAATTCAAGA
Found at i:83033447 original size:23 final size:23
Alignment explanation
Indices: 83033421--83033466 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
83033411 TTAATTGTAT
83033421 AAATTATTAAAAAATTCATAAAA
1 AAATTATTAAAAAATTCATAAAA
* * *
83033444 AAATTATTAGAAATTTTATAAAA
1 AAATTATTAAAAAATTCATAAAA
83033467 TCCTATTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (23 bp):
AAATTATTAAAAAATTCATAAAA
Found at i:83039444 original size:30 final size:30
Alignment explanation
Indices: 83039410--83039467 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
83039400 ACTTTTAAAA
83039410 AAAAACACTT-AACAGTTGAGTGACTTACAC
1 AAAAAC-CTTAAACAGTTGAGTGACTTACAC
* *
83039440 AAAAACTTTCAAACAGTTTAGTGACTTA
1 AAAAACCTT-AAACAGTTGAGTGACTTA
83039468 AATGACAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.08
30 6 0.25
31 16 0.67
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (30 bp):
AAAAACCTTAAACAGTTGAGTGACTTACAC
Found at i:83039595 original size:17 final size:17
Alignment explanation
Indices: 83039573--83039615 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
83039563 ATAATTTACT
83039573 TTTTAAAATTTTATGAA
1 TTTTAAAATTTTATGAA
*
83039590 TTTTAATAA-TTTATTAA
1 TTTTAA-AATTTTATGAA
83039607 -TTTAAAATT
1 TTTTAAAATT
83039616 AAACTAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 2 0.09
16 6 0.26
17 13 0.57
18 2 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TTTTAAAATTTTATGAA
Found at i:83045317 original size:69 final size:69
Alignment explanation
Indices: 83045237--83045376 Score: 244
Period size: 69 Copynumber: 2.0 Consensus size: 69
83045227 GGGCATCCCT
* * *
83045237 TTCATTCATACTTTTCTACTAGCTTTTGATTGGCCTTCCCCAGATCAACAAGTTTGCACCATTAA
1 TTCATTAATACTTTTCTACTAGCTTGTGATTGGCCTTCCCCAGATCAAAAAGTTTGCACCATTAA
83045302 TGTC
66 TGTC
*
83045306 TTCATTAATACTTTTCTACTAGCTTGTGATTGGCTTTCCCCAGATCAAAAAGTTTGCACCATTAA
1 TTCATTAATACTTTTCTACTAGCTTGTGATTGGCCTTCCCCAGATCAAAAAGTTTGCACCATTAA
83045371 TGTC
66 TGTC
83045375 TT
1 TT
83045377 ATTCACATTG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (69 bp):
TTCATTAATACTTTTCTACTAGCTTGTGATTGGCCTTCCCCAGATCAAAAAGTTTGCACCATTAA
TGTC
Found at i:83048033 original size:22 final size:23
Alignment explanation
Indices: 83047995--83048038 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
83047985 ATAATTTGTT
*
83047995 ATTATTTTGTATAATGTGAATTA
1 ATTAGTTTGTATAATGTGAATTA
83048018 ATTAGTTTG-ATAATGTGAATT
1 ATTAGTTTGTATAATGTGAATT
83048039 TGTCATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (23 bp):
ATTAGTTTGTATAATGTGAATTA
Found at i:83056599 original size:4 final size:4
Alignment explanation
Indices: 83056590--83056616 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
83056580 TAATCCCTAT
83056590 ATTA ATTA ATTA ATTA ATTA ATTA ATT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATT
83056617 TTTTATTACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
ATTA
Found at i:83058545 original size:16 final size:16
Alignment explanation
Indices: 83058526--83058587 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
83058516 AAATAATAGA
83058526 ATTTAATTAAAATATT
1 ATTTAATTAAAATATT
*
83058542 ATTTCATTAAAATATTT
1 ATTTAATTAAAATA-TT
* * *
83058559 AATAAATGAAAATAATT
1 ATTTAATTAAAAT-ATT
83058576 -TTTAA-TAAAATA
1 ATTTAATTAAAATA
83058588 AAATTATATT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
14 1 0.03
15 5 0.14
16 16 0.44
17 13 0.36
18 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
ATTTAATTAAAATATT
Found at i:83067726 original size:44 final size:44
Alignment explanation
Indices: 83067676--83067763 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
83067666 GGTCAGATCA
83067676 AATTAGGTATAAAACTTTTTCTAGATAAATATTTTTATTTAAAC
1 AATTAGGTATAAAACTTTTTCTAGATAAATATTTTTATTTAAAC
*
83067720 AATTAGGTATAAAATTTTTTCTAGATAAATATTTTTATTTAAAC
1 AATTAGGTATAAAACTTTTTCTAGATAAATATTTTTATTTAAAC
83067764 TTTTTCAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.41, C:0.06, G:0.07, T:0.47
Consensus pattern (44 bp):
AATTAGGTATAAAACTTTTTCTAGATAAATATTTTTATTTAAAC
Found at i:83068316 original size:6 final size:6
Alignment explanation
Indices: 83068305--83068333 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
83068295 ACACAAACGG
83068305 AATTAT AATTAT AATTAT AATTAT AATTA
1 AATTAT AATTAT AATTAT AATTAT AATTA
83068334 ATACATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTAT
Found at i:83069441 original size:30 final size:29
Alignment explanation
Indices: 83069405--83069469 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 29
83069395 TGGTAAATTA
83069405 AAAAATTAAGTATT-AAAAATATAAGTTAT
1 AAAAATTAAGTATTAAAAAAT-TAAGTTAT
*
83069434 GAAAAATTAATTATTAAAAAATTAAGTTAT
1 -AAAAATTAAGTATTAAAAAATTAAGTTAT
83069464 AAAAAT
1 AAAAAT
83069470 AAAATAGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 6 0.18
30 21 0.64
31 6 0.18
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (29 bp):
AAAAATTAAGTATTAAAAAATTAAGTTAT
Found at i:83069466 original size:15 final size:15
Alignment explanation
Indices: 83069403--83069468 Score: 82
Period size: 15 Copynumber: 4.4 Consensus size: 15
83069393 TTTGGTAAAT
83069403 TAAAAAATTAAG-TA
1 TAAAAAATTAAGTTA
*
83069417 TTAAAAATATAAGTTA
1 TAAAAAAT-TAAGTTA
*
83069433 TGAAAAATTAA-TTA
1 TAAAAAATTAAGTTA
83069447 TTAAAAAATTAAGTTA
1 -TAAAAAATTAAGTTA
83069463 TAAAAA
1 TAAAAA
83069469 TAAAATAGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
14 10 0.22
15 23 0.51
16 12 0.27
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (15 bp):
TAAAAAATTAAGTTA
Found at i:83079439 original size:3 final size:3
Alignment explanation
Indices: 83079403--83079602 Score: 89
Period size: 3 Copynumber: 65.0 Consensus size: 3
83079393 TATATCTTTA
* *
83079403 TAT TAT ATAT TAT AAT TAT T-T TAT TA- TACA TAT TAT TAT TAT TATT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA-T
* * * * *
83079449 TAT TGT ATAT TAT T-T TTT TACA AAT TAT TAT TAT T-T TA- CAT TAT
1 TAT TAT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
83079493 TATT TAT ATAT TAT TAT TA- TAT TAT GTAT TAT T-T ATAT TATT TAT
1 TA-T TAT -TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT TA-T TAT
* *
83079538 ATAT TAT ATAT TAT TTT TACA TAT ATAT T-T TCA- TAT TAT ATAT TAT
1 -TAT TAT -TAT TAT TAT TA-T TAT -TAT TAT T-AT TAT TAT -TAT TAT
*
83079584 AAT TAT T-T TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
83079603 GTCATCTTTT
Statistics
Matches: 152, Mismatches: 18, Indels: 54
0.68 0.08 0.24
Matches are distributed among these distances:
2 19 0.12
3 95 0.62
4 38 0.25
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:83079507 original size:27 final size:27
Alignment explanation
Indices: 83079386--83079602 Score: 118
Period size: 27 Copynumber: 7.9 Consensus size: 27
83079376 TTATCACATA
83079386 ATAT-TTATATATCTTTATATTA-TATATT
1 ATATATTAT-TAT-TTTATATTATTAT-TT
*
83079414 ATA-ATTATT-TTATTATACATATTA-TT
1 ATATATTATTATT-TTATA-TTATTATTT
* *
83079440 AT-TATTATTTATTGTATATTATTTTTTT
1 ATATATTA-TTATTTTATATTA-TTATTT
* *
83079468 ACAAATTATTATTATTTTACATTATTATTT
1 --ATA-TATTATTATTTTATATTATTATTT
*
83079498 ATATATTATTATTATATTATGTATTATTT
1 ATATATTATTATTTTA-TAT-TATTATTT
*
83079527 ATATTATTTATATATTATATATTATT-TTT
1 ATA-TA-TTAT-TATTTTATATTATTATTT
*
83079556 ACATA-TA-TATTTTCATATTA-TA--T
1 ATATATTATTATTTT-ATATTATTATTT
*
83079579 AT-TATAATTATTTTATATTATTAT
1 ATATATTATTATTTTATATTATTAT
83079603 GTCATCTTTT
Statistics
Matches: 150, Mismatches: 15, Indels: 51
0.69 0.07 0.24
Matches are distributed among these distances:
22 2 0.01
23 9 0.06
24 14 0.09
25 7 0.05
26 18 0.12
27 23 0.15
28 19 0.13
29 16 0.11
30 12 0.08
31 18 0.12
32 12 0.08
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (27 bp):
ATATATTATTATTTTATATTATTATTT
Found at i:83079567 original size:32 final size:31
Alignment explanation
Indices: 83079488--83079583 Score: 98
Period size: 32 Copynumber: 3.2 Consensus size: 31
83079478 ATTATTTTAC
83079488 ATTATTA-TT-TATATA-TTAT-TATTATATT
1 ATTATTATTTATATATATTTATATATTATA-T
83079516 ATGTATTATTTATAT-TATTTATATATTATAT
1 AT-TATTATTTATATATATTTATATATTATAT
83079547 ATTATT-TTTACATATATATTT-TCATATTATAT
1 ATTATTATTT--ATATATATTTAT-ATATTATAT
83079579 ATTAT
1 ATTAT
83079584 AATTATTTTA
Statistics
Matches: 59, Mismatches: 0, Indels: 14
0.81 0.00 0.19
Matches are distributed among these distances:
28 2 0.03
29 8 0.14
30 8 0.14
31 15 0.25
32 26 0.44
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.61
Consensus pattern (31 bp):
ATTATTATTTATATATATTTATATATTATAT
Found at i:83079784 original size:3 final size:3
Alignment explanation
Indices: 83079748--83079948 Score: 89
Period size: 3 Copynumber: 65.0 Consensus size: 3
83079738 TATATCTTTA
* *
83079748 TAT TAT ATAT TAT AAT TAT T-T TAT TA- TACA TAT TAT TAT TAT TATT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA-T
* * * * * *
83079794 TAT TGT ATAT TAT TTT TTT TACA AAT TAT TAT TAT T-T TA- CAT TAT
1 TAT TAT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
83079839 TATT TAT ATAT TAT TAT TA- TAT TAT GTAT TAT T-T ATAT TATT TAT
1 TA-T TAT -TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT TA-T TAT
* *
83079884 ATAT TAT ATAT TAT TTT TACA TAT ATAT T-T TCA- TAT TAT ATAT TAT
1 -TAT TAT -TAT TAT TAT TA-T TAT -TAT TAT T-AT TAT TAT -TAT TAT
*
83079930 AAT TAT T-T TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
83079949 GTCATCTTTT
Statistics
Matches: 153, Mismatches: 19, Indels: 52
0.68 0.08 0.23
Matches are distributed among these distances:
2 17 0.11
3 98 0.64
4 38 0.25
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:83079791 original size:39 final size:39
Alignment explanation
Indices: 83079748--83079879 Score: 126
Period size: 39 Copynumber: 3.3 Consensus size: 39
83079738 TATATCTTTA
83079748 TATTATATATTATAATTATTTTATTATACATATTATTAT
1 TATTATATATTATAATTATTTTATTATACATATTATTAT
* * * *
83079787 TATTATTTATTGTATATTATTTT-TTTTACAAATTATTAT
1 TATTATATATTATA-ATTATTTTATTATACATATTATTAT
* * * *
83079826 TATTTTACATTATTATTTATATATTATTAT-TATATTATGTAT
1 TATTATATATTA-TAATTAT-T-TTATTATACATATTAT-TAT
83079868 TATT-TATATTAT
1 TATTATATATTAT
83079880 TTATATATTA
Statistics
Matches: 74, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
39 38 0.51
40 12 0.16
41 14 0.19
42 10 0.14
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (39 bp):
TATTATATATTATAATTATTTTATTATACATATTATTAT
Found at i:83079823 original size:19 final size:17
Alignment explanation
Indices: 83079785--83079845 Score: 58
Period size: 14 Copynumber: 3.7 Consensus size: 17
83079775 ACATATTATT
*
83079785 ATTATTATTTATTGT--
1 ATTATTATTTATTTTAC
*
83079800 A-TATTATTTTTTTTAC
1 ATTATTATTTATTTTAC
83079816 AAATTATTA-TTATTTTAC
1 --ATTATTATTTATTTTAC
83079834 ATTATTATTTAT
1 ATTATTATTTAT
83079846 ATATTATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
14 11 0.30
15 1 0.03
16 7 0.19
17 4 0.11
18 9 0.24
19 5 0.14
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (17 bp):
ATTATTATTTATTTTAC
Found at i:83079852 original size:11 final size:11
Alignment explanation
Indices: 83079836--83079946 Score: 80
Period size: 11 Copynumber: 10.6 Consensus size: 11
83079826 TATTTTACAT
83079836 TATTATTTATA
1 TATTATTTATA
83079847 TATTA-TTAT-
1 TATTATTTATA
*
83079856 TA-TA-TTATG
1 TATTATTTATA
83079865 TATTA-TT-TA
1 TATTATTTATA
83079874 TATTATTTATA
1 TATTATTTATA
*
83079885 TATTATATAT-
1 TATTATTTATA
*
83079895 TATT-TTTACA
1 TATTATTTATA
83079905 TATATATTT-TCA
1 TAT-TATTTAT-A
*
83079917 TATTATATATTA
1 TATTATTTA-TA
83079929 TAATTATTT-TA
1 T-ATTATTTATA
83079940 TATTATT
1 TATTATT
83079947 ATGTCATCTT
Statistics
Matches: 82, Mismatches: 7, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
8 6 0.07
9 13 0.16
10 23 0.28
11 24 0.29
12 9 0.11
13 7 0.09
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (11 bp):
TATTATTTATA
Found at i:83079852 original size:27 final size:27
Alignment explanation
Indices: 83079731--83079948 Score: 111
Period size: 27 Copynumber: 7.9 Consensus size: 27
83079721 TTATCACATA
83079731 ATAT-TTATATATCTTTATATTA-TATATT
1 ATATATTAT-TAT-TTTATATTATTAT-TT
*
83079759 ATA-ATTATT-TTATTATACATATTA-TT
1 ATATATTATTATT-TTATA-TTATTATTT
* *
83079785 AT-TATTATTTATTGTATATTATTTTTTTT
1 ATATATTA-TTATTTTATATTA--TTATTT
* *
83079814 ACAAATTATTATTATTTTACATTATTATTT
1 --ATA-TATTATTATTTTATATTATTATTT
*
83079844 ATATATTATTATTATATTATGTATTATTT
1 ATATATTATTATTTTA-TAT-TATTATTT
*
83079873 ATATTATTTATATATTATATATTATT-TTT
1 ATA-TA-TTAT-TATTTTATATTATTATTT
*
83079902 ACATA-TA-TATTTTCATATTA-TA--T
1 ATATATTATTATTTT-ATATTATTATTT
*
83079925 AT-TATAATTATTTTATATTATTAT
1 ATATATTATTATTTTATATTATTAT
83079949 GTCATCTTTT
Statistics
Matches: 150, Mismatches: 15, Indels: 53
0.69 0.07 0.24
Matches are distributed among these distances:
22 2 0.01
23 9 0.06
24 14 0.09
25 7 0.05
26 18 0.12
27 21 0.14
28 19 0.13
29 18 0.12
30 11 0.07
31 8 0.05
32 18 0.12
33 5 0.03
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (27 bp):
ATATATTATTATTTTATATTATTATTT
Found at i:83079852 original size:30 final size:28
Alignment explanation
Indices: 83079818--83079948 Score: 93
Period size: 32 Copynumber: 4.3 Consensus size: 28
83079808 TTTTTTACAA
83079818 ATTATTATTATTTTACATTATTATTTATAT
1 ATTATTATTATTTT--ATTATTATTTATAT
*
83079848 ATTATTATTATATTATGTATTATTTATATT
1 ATTATTATTATTTTAT-TATTATTTATA-T
* **
83079878 ATTTATATATTATATATTATTTTTACATATAT
1 A-TTAT-TATTAT-T-TTATTATTATTTATAT
* *
83079910 ATTTTCATATTATATATTATAATTATTT-TAT
1 ATTAT--TATTAT-T-TTATTATTATTTATAT
83079941 ATTATTAT
1 ATTATTAT
83079949 GTCATCTTTT
Statistics
Matches: 83, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
28 2 0.02
29 14 0.17
30 15 0.18
31 14 0.17
32 26 0.31
33 8 0.10
34 4 0.05
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (28 bp):
ATTATTATTATTTTATTATTATTTATAT
Found at i:83079914 original size:346 final size:347
Alignment explanation
Indices: 83079322--83080020 Score: 1375
Period size: 346 Copynumber: 2.0 Consensus size: 347
83079312 CATATCTTTC
83079322 TATTATCATATTAATTAACATATATCGTTACTTATTATTTATTATAGTATATTTTTATCACATAA
1 TATTATCATATTAATTAACATATATCGTTACTTATTATTTATTATAGTATATTTTTATCACATAA
83079387 TATTTATATATCTTTATATTATATATTATAATTATTTTATTATACATATTATTATTATTATTTAT
66 TATTTATATATCTTTATATTATATATTATAATTATTTTATTATACATATTATTATTATTATTTAT
83079452 TGTATATTATTTTTTTACAAATTATTATTATTTTACATTATTATTTATATATTATTATTATATTA
131 TGTATATTATTTTTTTACAAATTATTATTATTTTACATTATTATTTATATATTATTATTATATTA
83079517 TGTATTATTTATATTATTTATATATTATATATTATTTTTACATATATATTTTCATATTATATATT
196 TGTATTATTTATATTATTTATATATTATATATTATTTTTACATATATATTTTCATATTATATATT
83079582 ATAATTATTTTATATTATTATGTCATCTTTTATACCATTATATATA-TTTTT-TCTATATATTAT
261 ATAATTATTTTATATTATTATGTCATCTTTTATACCATTATATATATTTTTTATCTATATATTAT
83079645 TATCATTAAAAGTTTTAACTTG
326 TATCATTAAAAGTTTTAACTTG
83079667 TATTATCATATTAATTAACATATATCGTTACTTATTATTTATTATAGTATATTTTTATCACATAA
1 TATTATCATATTAATTAACATATATCGTTACTTATTATTTATTATAGTATATTTTTATCACATAA
83079732 TATTTATATATCTTTATATTATATATTATAATTATTTTATTATACATATTATTATTATTATTTAT
66 TATTTATATATCTTTATATTATATATTATAATTATTTTATTATACATATTATTATTATTATTTAT
83079797 TGTATATTATTTTTTTTACAAATTATTATTATTTTACATTATTATTTATATATTATTATTATATT
131 TGTATATTA-TTTTTTTACAAATTATTATTATTTTACATTATTATTTATATATTATTATTATATT
83079862 ATGTATTATTTATATTATTTATATATTATATATTATTTTTACATATATATTTTCATATTATATAT
195 ATGTATTATTTATATTATTTATATATTATATATTATTTTTACATATATATTTTCATATTATATAT
83079927 TATAATTATTTTATATTATTATGTCATCTTTTATACCATTATATATATTTTTTATCTATATATTA
260 TATAATTATTTTATATTATTATGTCATCTTTTATACCATTATATATATTTTTTATCTATATATTA
83079992 TTATCATTAAAAGTTTTAACTTG
325 TTATCATTAAAAGTTTTAACTTG
83080015 TATTAT
1 TATTAT
83080021 ACACTTATTT
Statistics
Matches: 351, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
345 139 0.40
346 167 0.48
347 5 0.01
348 40 0.11
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.58
Consensus pattern (347 bp):
TATTATCATATTAATTAACATATATCGTTACTTATTATTTATTATAGTATATTTTTATCACATAA
TATTTATATATCTTTATATTATATATTATAATTATTTTATTATACATATTATTATTATTATTTAT
TGTATATTATTTTTTTACAAATTATTATTATTTTACATTATTATTTATATATTATTATTATATTA
TGTATTATTTATATTATTTATATATTATATATTATTTTTACATATATATTTTCATATTATATATT
ATAATTATTTTATATTATTATGTCATCTTTTATACCATTATATATATTTTTTATCTATATATTAT
TATCATTAAAAGTTTTAACTTG
Found at i:83079947 original size:13 final size:13
Alignment explanation
Indices: 83079820--83079948 Score: 99
Period size: 13 Copynumber: 9.7 Consensus size: 13
83079810 TTTTACAAAT
83079820 TATTATTATTTTA
1 TATTATTATTTTA
*
83079833 CATTATTATTTATA
1 TATTATTATTT-TA
*
83079847 TATTATTATTATA
1 TATTATTATTTTA
83079860 TTATGTATTA-TTTA
1 -TAT-TATTATTTTA
83079874 TATTATTTATATATTA
1 TATTA-TTAT-T-TTA
83079890 TA-TATTATTTT-
1 TATTATTATTTTA
*
83079901 TACATATATATTTTCA
1 TA-TTAT-TATTTT-A
*
83079917 TATTA-TATATTA
1 TATTATTATTTTA
83079929 TA--ATTATTTTA
1 TATTATTATTTTA
83079940 TATTATTAT
1 TATTATTAT
83079949 GTCATCTTTT
Statistics
Matches: 94, Mismatches: 7, Indels: 30
0.72 0.05 0.23
Matches are distributed among these distances:
10 1 0.01
11 10 0.11
12 7 0.07
13 32 0.34
14 27 0.29
15 10 0.11
16 7 0.07
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (13 bp):
TATTATTATTTTA
Found at i:83088221 original size:117 final size:118
Alignment explanation
Indices: 83087950--83088740 Score: 1043
Period size: 117 Copynumber: 6.7 Consensus size: 118
83087940 GTCGTCTTCT
* * * * * *
83087950 TCTTCTAGTAATCTTGCTGGTGGATTGTTTCCTTCGTCGTCACTAGGTGGTTTCTCACCGGCGAA
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCC-T--TCGTCACTAGGTGGTTTCTCGCCGGCGAA
* *
83088015 TGGACTCTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATG
63 TGGACTCTCTTCCTCAACG--TGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* ** *
83088073 CCTGCTAGTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
* * *
83088138 ACTCTCTTCCTCAACGT-CTTGTAGTAATCGTTCCTCACGGATGAGCTCAATG
66 ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
*
83088190 TCTTTTAATAATCTTTCTGG-GGAATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATG
1 TCTTTTAGTAATCTTTCTGGAGG-ATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATG
* * * * *
83088254 GACTTTCTTCCTCGACGTCTGCTTGTAGTAACCGTTTTTCACCGACGACCTCAATG
65 GACTCTCTTCCTCAACG--TGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* *
83088310 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCAAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
* ** *
83088375 GCTCTCTTCCTCAACGT-CTTGTAGTTTTCGTTTCTTACCGATGACCTCAATG
66 ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
*
83088427 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
* * ** *
83088492 ACTTTCTTCCTCAACAT-CTTGTAGTTTTCGTTTCTCACCGATGACCTCGATG
66 ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* *
83088544 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
** * *
83088609 ACTCTCTTCCTCGACATC-TGCTTGTAGTTTTCGTTTCTCACCGATAACCTCAATT
66 ACTCTCTTCCTC-A-A-CGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* * * * *
83088664 TCTTTTAGTAATCTTTCTGGGGGCTTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAACGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
*
83088729 ACTTTCTTCCTC
66 ACTCTCTTCCTC
83088741 GACATTCTCT
Statistics
Matches: 602, Mismatches: 57, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
116 2 0.00
117 317 0.53
118 3 0.00
119 3 0.00
120 249 0.41
121 2 0.00
122 1 0.00
123 25 0.04
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (118 bp):
TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
Found at i:83088426 original size:237 final size:236
Alignment explanation
Indices: 83087950--83088743 Score: 1128
Period size: 237 Copynumber: 3.3 Consensus size: 236
83087940 GTCGTCTTCT
* * * *
83087950 TCTTCTAGTAATCTTGCTGGTGGATTGTTTCCTTCGTCGTCACTAGGTGGTTTCTCACCGGCGAA
1 TCTTTTAGTAATCTTTCTGG-GGATTATCTCC-T--TCGTCACTAGGTGGTTTCTCACCGGCGAA
* * * **
83088015 TGGACTCTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTA
62 TGGACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTA
* *
83088080 GTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
127 GTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
** * * *
83088145 TCCTCAACGTCTTGTAGTAATCGTTCCTCACGGATGAGCTCAATG
192 TCCTCAACGTCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
* *
83088190 TCTTTTAATAATCTTTCTGGGGAATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGGG-ATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
* * *
83088255 ACTTTCTTCCTCGACGTCTGCTTGTAGTAACCGTTTTTCACCGACGACCTCAATGTCTTTTAGTA
65 ACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTAGTA
* *
83088320 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCAAATGGGCTCTCTTCC
130 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCC
*
83088385 TCAACGTCTTGTAGTTTTCGTTTCTTACCGATGACCTCAATG
195 TCAACGTCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
* *
83088427 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGG-GGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
* * ** *
83088492 ACTTTCTTCCTCAAC--AT-CTTGTAGTTTTCGTTTCTCACCGATGACCTCGATGTCTTTTAGTA
65 ACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTAGTA
*
83088554 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCC
130 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCC
* *
83088619 TCGACATC-TGCTTGTAGTTTTCGTTTCTCACCGATAACCTCAATT
195 TC-A-A-CGT-CTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
* * *
83088664 TCTTTTAGTAATCTTTCTGGGGGCTTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAACGG
1 TCTTTTAGTAATCTTTCT-GGGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
83088729 ACTTTCTTCCTCGAC
65 ACTTTCTTCCTCGAC
83088744 ATTCTCTTCC
Statistics
Matches: 501, Mismatches: 46, Indels: 17
0.89 0.08 0.03
Matches are distributed among these distances:
234 103 0.21
235 2 0.00
236 2 0.00
237 363 0.72
238 4 0.01
239 3 0.01
240 24 0.05
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (236 bp):
TCTTTTAGTAATCTTTCTGGGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGGA
CTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTAGTAA
TCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCCT
CAACGTCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
Found at i:83088697 original size:354 final size:356
Alignment explanation
Indices: 83087950--83088740 Score: 1129
Period size: 354 Copynumber: 2.2 Consensus size: 356
83087940 GTCGTCTTCT
* * * * * *
83087950 TCTTCTAGTAATCTTGCTGGTGGATTGTTTCCTTCGTCGTCACTAGGTGGTTTCTCACCGGCGAA
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCC-T--TCGTCACTAGGTGGTTTCTCACCGGCAAA
*
83088015 TGGACTCTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTA
63 TGGACTCTCTTCCTCAACG-CTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTA
83088080 GTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
127 GTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
* * *
83088145 TCCTCAACGTCTTGTAGTAATCGTTCCTCACGGATGAGCTCAATGTCTTTTAATAATCTTTCTGG
192 TCCTCAACATCTTGTAGTAATCGTTCCTCACCGATGACCTCAATGTCTTTTAATAATCTTTCTGG
* * *
83088210 GGAATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTTTCTTCCTCGACGTCTG
257 GGAATTATCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTG
* *
83088275 CTTGTAGTAACCGTTTTTCACCGACGACCTCAATG
322 CTTGTAGTAACCGTTTCTCACCGACAACCTCAATG
* *
83088310 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCAAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
* ** * * * **
83088375 GCTCTCTTCCTCAACG-T-CTTGTAGTTTTCGTTTCTTACCGATGACCTCAATGTCTTTTAGTAA
66 ACTCTCTTCCTCAACGCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTAGTAA
* * *
83088438 TCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTTTCTTCCT
131 TCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCCT
** * * *
83088503 CAACATCTTGTAGTTTTCGTTTCTCACCGATGACCTCGATGTCTTTTAGTAATCTTTCTGGAGG-
196 CAACATCTTGTAGTAATCGTTCCTCACCGATGACCTCAATGTCTTTTAATAATCTTTCTGG-GGA
*
83088567 ATTGTCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTGCTT
260 ATTATCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTGCTT
*** * *
83088632 GTAGTTTTCGTTTCTCACCGATAACCTCAATT
325 GTAGTAACCGTTTCTCACCGACAACCTCAATG
* * *
83088664 TCTTTTAGTAATCTTTCTGGGGGCTTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAACGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
*
83088729 ACTTTCTTCCTC
66 ACTCTCTTCCTC
83088741 GACATTCTCT
Statistics
Matches: 386, Mismatches: 44, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
354 310 0.80
355 3 0.01
357 44 0.11
359 1 0.00
360 28 0.07
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (356 bp):
TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
ACTCTCTTCCTCAACGCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTAGTAA
TCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCCT
CAACATCTTGTAGTAATCGTTCCTCACCGATGACCTCAATGTCTTTTAATAATCTTTCTGGGGAA
TTATCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTGCTTG
TAGTAACCGTTTCTCACCGACAACCTCAATG
Found at i:83090490 original size:30 final size:30
Alignment explanation
Indices: 83090454--83090552 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
83090444 CTAGTCTTTG
83090454 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
83090484 CCACCACTAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
83090514 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
83090544 CCACCACCA
1 CCACCACCA
83090553 CTTGTACCTA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.26, C:0.49, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:83091148 original size:25 final size:25
Alignment explanation
Indices: 83091023--83091233 Score: 109
Period size: 25 Copynumber: 8.6 Consensus size: 25
83091013 TTTTTTTTGT
* *
83091023 TATTAT-TATATTTC-TTAATATTA
1 TATTATGTATATATCTTTAATACTA
*
83091046 TATTATGTATATATTCTTT--TAATA
1 TATTATGTATATA-TCTTTAATACTA
* * *
83091070 TATTAGGTATAT-TC-TAAATTCTA
1 TATTATGTATATATCTTTAATACTA
* *
83091093 TATTACGTATATATATATT-ATACTA
1 TATTATGTATATATCT-TTAATACTA
*
83091118 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATCTTTAATACTA
* * * **
83091143 TATTATTTATATTTTTTTTTCTACATGTTA
1 TATTATGTATA---TATCTT-TA-ATACTA
*
83091173 TCTTATGTATATAT-TTTAAT--TA
1 TATTATGTATATATCTTTAATACTA
* * * *
83091195 TATTATGTATGTATTTTTTACACTA
1 TATTATGTATATATCTTTAATACTA
*
83091220 TATTATGTACATAT
1 TATTATGTATATAT
83091234 TTTTTTTATA
Statistics
Matches: 143, Mismatches: 28, Indels: 32
0.70 0.14 0.16
Matches are distributed among these distances:
21 1 0.01
22 16 0.11
23 24 0.17
24 25 0.17
25 51 0.36
26 5 0.03
27 2 0.01
28 4 0.03
29 2 0.01
30 13 0.09
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (25 bp):
TATTATGTATATATCTTTAATACTA
Found at i:83091224 original size:77 final size:82
Alignment explanation
Indices: 83091102--83091273 Score: 192
Period size: 77 Copynumber: 2.2 Consensus size: 82
83091092 ATATTACGTA
* * * * * *
83091102 TATATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATAT-TTTTTTTTCTA
1 TATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATA
*
83091166 -C-ATGTTAT-CTTATG
66 TCTATGTTATACATATG
* * * *
83091180 TATATATTTTA-ATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTTTTATA
1 TATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATA
*
83091244 TCTATTTTATACATATG
66 TCTATGTTATACATATG
*
83091261 TATATATTATATA
1 TATATATTTTATA
83091274 TATCTTAACA
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
77 33 0.43
78 20 0.26
79 1 0.01
80 6 0.08
81 15 0.20
82 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (82 bp):
TATATATTTTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTTTTATA
TCTATGTTATACATATG
Found at i:83093505 original size:40 final size:40
Alignment explanation
Indices: 83093461--83093538 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
83093451 TTTCATCAAA
* *
83093461 AATTTTACAGTTCAATGCAGTATACATAACAATATTCAGT
1 AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
* * *
83093501 AATTTCACAGTTCAATTCGGTATTCAAAACAATATTCA
1 AATTTCACAGTTCAATGCAGTATACAAAACAATATTCA
83093539 ATATCCCATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.35
Consensus pattern (40 bp):
AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
Found at i:83094383 original size:20 final size:21
Alignment explanation
Indices: 83094347--83094389 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
83094337 AGTTTATTAT
83094347 ATTATTATATTAACTT-AATA
1 ATTATTATATTAACTTAAATA
*
83094367 ATTATTATTATT-TCTTAAATA
1 ATTATTA-TATTAACTTAAATA
83094388 AT
1 AT
83094390 AAGTAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (21 bp):
ATTATTATATTAACTTAAATA
Found at i:83094599 original size:18 final size:18
Alignment explanation
Indices: 83094546--83094604 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
83094536 AATAACAAAT
*
83094546 ATAACAATTAAGTTATTCA
1 ATAACAA-TCAGTTATTCA
* *
83094565 GTAACAGTCA-TTCATTCA
1 ATAACAATCAGTT-ATTCA
*
83094583 ATGACAATCAGTTATTCA
1 ATAACAATCAGTTATTCA
83094601 ATAA
1 ATAA
83094605 TGATTAATTA
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
17 2 0.06
18 22 0.71
19 7 0.23
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.34
Consensus pattern (18 bp):
ATAACAATCAGTTATTCA
Found at i:83094633 original size:18 final size:19
Alignment explanation
Indices: 83094590--83094640 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
83094580 TCAATGACAA
*
83094590 TCAGTTATTCAATAATGAT
1 TCAGTTATTCAGTAATGAT
* *
83094609 T-AATTATCCAGTAAT-AT
1 TCAGTTATTCAGTAATGAT
83094626 TCAGTTATTCAGTAA
1 TCAGTTATTCAGTAA
83094641 CAGTCTAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 3 0.12
18 22 0.85
19 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (19 bp):
TCAGTTATTCAGTAATGAT
Found at i:83094653 original size:36 final size:36
Alignment explanation
Indices: 83094556--83094706 Score: 119
Period size: 36 Copynumber: 4.2 Consensus size: 36
83094546 ATAACAATTA
* * * *
83094556 AGTTATTCAGTAACAGTC-ATTCATTCAATGACAATC
1 AGTTATTCAGTAACAGTCAATT-ATCCAGTAATAATC
* * * *
83094592 AGTTATTCAATAA-TGATTAATTATCCAGTAATATTC
1 AGTTATTCAGTAACAG-TCAATTATCCAGTAATAATC
* *
83094628 AGTTATTCAGTAACAGTCTAA-TATCCAGTAACAGTC
1 AGTTATTCAGTAACAGTC-AATTATCCAGTAATAATC
* * * **
83094664 AATTATCCTGTAACAGTCAATTATTTAGTAATAATC
1 AGTTATTCAGTAACAGTCAATTATCCAGTAATAATC
83094700 AGTTATT
1 AGTTATT
83094707 TTATACCTTT
Statistics
Matches: 88, Mismatches: 22, Indels: 10
0.73 0.18 0.08
Matches are distributed among these distances:
35 3 0.03
36 79 0.90
37 6 0.07
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
AGTTATTCAGTAACAGTCAATTATCCAGTAATAATC
Found at i:83094694 original size:18 final size:18
Alignment explanation
Indices: 83094610--83094687 Score: 95
Period size: 18 Copynumber: 4.3 Consensus size: 18
83094600 AATAATGATT
* *
83094610 AATTATCCAGTAATATTC
1 AATTATCCAGTAACAGTC
* *
83094628 AGTTATTCAGTAACAGTC
1 AATTATCCAGTAACAGTC
83094646 TAA-TATCCAGTAACAGTC
1 -AATTATCCAGTAACAGTC
*
83094664 AATTATCCTGTAACAGTC
1 AATTATCCAGTAACAGTC
83094682 AATTAT
1 AATTAT
83094688 TTAGTAATAA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
17 2 0.04
18 48 0.94
19 1 0.02
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (18 bp):
AATTATCCAGTAACAGTC
Found at i:83094894 original size:59 final size:58
Alignment explanation
Indices: 83094783--83094894 Score: 154
Period size: 59 Copynumber: 1.9 Consensus size: 58
83094773 ACCAGTACAG
* * * *
83094783 CACATAGTGCCTCATCGGCCAAAGCCGGAACAGTAACAGTAACAGTAGCAGTACGGTA
1 CACAGAGTACCTCATCGGACAAAGCCGGAACAGTAACAGTAACAGTAACAGTACGGTA
*
83094841 CACAGAGTACCTCATCGGAACAAATCCGGAACAGTAACAGTAAC-GATAACAGTA
1 CACAGAGTACCTCATCGG-ACAAAGCCGGAACAGTAACAGTAACAG-TAACAGTA
83094895 ACAATATCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
58 17 0.36
59 30 0.64
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.15
Consensus pattern (58 bp):
CACAGAGTACCTCATCGGACAAAGCCGGAACAGTAACAGTAACAGTAACAGTACGGTA
Found at i:83096572 original size:2 final size:2
Alignment explanation
Indices: 83096565--83096634 Score: 98
Period size: 2 Copynumber: 38.0 Consensus size: 2
83096555 TTCTTTAGTT
83096565 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
83096606 TA TA -A TA TA -A TA TA -A TA TA -A TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
83096635 ATTAAAACAT
Statistics
Matches: 62, Mismatches: 0, Indels: 12
0.84 0.00 0.16
Matches are distributed among these distances:
1 6 0.10
2 56 0.90
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:83096636 original size:20 final size:22
Alignment explanation
Indices: 83096565--83096634 Score: 108
Period size: 24 Copynumber: 3.2 Consensus size: 22
83096555 TTCTTTAGTT
83096565 TATATATATATATATATATATATA
1 TATATATATATATATA-ATATA-A
83096589 TATATATATATATATAATATAA
1 TATATATATATATATAATATAA
83096611 TATA-ATATA-ATATAATATAA
1 TATATATATATATATAATATAA
83096631 TATA
1 TATA
83096635 ATTAAAACAT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
20 15 0.33
21 5 0.11
22 5 0.11
23 5 0.11
24 16 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TATATATATATATATAATATAA
Found at i:83097887 original size:18 final size:18
Alignment explanation
Indices: 83097826--83097888 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 18
83097816 AATTGGTTAA
* *
83097826 TCAGTAATATTCATTTAT
1 TCAGTAACAATCATTTAT
* * *
83097844 TCAGTATCAGTCGTTTAT
1 TCAGTAACAATCATTTAT
* *
83097862 TCTGTAACAATCAATTAT
1 TCAGTAACAATCATTTAT
83097880 TCAGTAACA
1 TCAGTAACA
83097889 GACAGTCTTT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (18 bp):
TCAGTAACAATCATTTAT
Found at i:83098442 original size:3 final size:3
Alignment explanation
Indices: 83098434--83098481 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
83098424 ATTCAATACC
83098434 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
83098482 CTTACCATTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:83099147 original size:16 final size:15
Alignment explanation
Indices: 83099125--83099163 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
83099115 ATTTTTCTCC
83099125 TTCTTTCTCCCCTGT
1 TTCTTTCTCCCCTGT
* *
83099140 TTCGTTTCTTCTCTGT
1 TTC-TTTCTCCCCTGT
83099156 TTCTTTCT
1 TTCTTTCT
83099164 ATTCCTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (15 bp):
TTCTTTCTCCCCTGT
Found at i:83101177 original size:32 final size:33
Alignment explanation
Indices: 83101137--83101200 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 33
83101127 TTTTTAAGTA
* * *
83101137 AATTATATTATAATAAT-TTAAAATAATAAATG
1 AATTATATTATAAAAATAATAAAACAATAAATG
*
83101169 AATTATATTTTAAAAATAATAAAACAATAAAT
1 AATTATATTATAAAAATAATAAAACAATAAAT
83101201 AAATGCATAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (33 bp):
AATTATATTATAAAAATAATAAAACAATAAATG
Found at i:83101477 original size:12 final size:12
Alignment explanation
Indices: 83101462--83101496 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
83101452 AAAATCGAGC
83101462 TATAAATATTTT
1 TATAAATATTTT
83101474 TATAAATATTTT
1 TATAAATATTTT
83101486 TATAAATATTT
1 TATAAATATTT
83101497 ATGGAGTGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TATAAATATTTT
Found at i:83102665 original size:35 final size:35
Alignment explanation
Indices: 83102626--83102790 Score: 181
Period size: 35 Copynumber: 4.6 Consensus size: 35
83102616 CCATGGAAAG
83102626 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
* *
83102661 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
83102696 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** * * *
83102736 T-AAAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGT
**
83102770 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
83102791 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
33 1 0.01
34 11 0.10
35 69 0.61
36 2 0.02
38 3 0.03
39 14 0.12
40 13 0.12
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:83102778 original size:74 final size:75
Alignment explanation
Indices: 83102630--83102795 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
83102620 GGAAAGTGTG
** *
83102630 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
83102690 CTGAGCTGTG
66 CCGAGCTGAA
83102700 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
83102763 ACCGAGTTGAA
65 ACCGAGCTGAA
83102774 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
83102796 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:83110263 original size:74 final size:75
Alignment explanation
Indices: 83110115--83110280 Score: 204
Period size: 74 Copynumber: 2.3 Consensus size: 75
83110105 GCAAAGTGTG
** *
83110115 AAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTATCCATA
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
* **
83110175 CTGAGCTGTG
66 CCGAGCTGAA
83110185 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AAAAATGTAGGTATGGCATT-TCCCAT
1 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTAT-CCAT
*
83110248 ACCGAGTTGAA
65 ACCGAGCTGAA
83110259 AAATGTAGGTATGGTATT-TCAA
1 AAATGTAGGTATGGTATTATCAA
83110281 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 14 0.17
73 9 0.11
74 46 0.55
75 14 0.17
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
AAATGTAGGTATGGTATTATCAAATCCATACTGAGTTGAAAAATGTAGGTATGGCATTATCCATA
CCGAGCTGAA
Found at i:83110278 original size:35 final size:35
Alignment explanation
Indices: 83110115--83110278 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
83110105 GCAAAGTGTG
* **
83110115 AAATGTAGGTATGGTATCAT-CCATACTGAGTTGTG
1 AAATGTAGGTATGGTAT-TTCCCATACTGAGTTGAA
* **
83110150 AAATGTAGGTATGGTATTAT-CCATACTGAGCTGTG
1 AAATGTAGGTATGGTATT-TCCCATACTGAGTTGAA
83110185 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AA
1 AAATGTAGGTATGGTATT-TC----CCATACTGAGTTGAA
* *
83110224 AAATGTAGGTATGGCATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
83110259 AAATGTAGGTATGGTATTTC
1 AAATGTAGGTATGGTATTTC
83110279 AATGAGGAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
34 11 0.10
35 73 0.64
38 2 0.02
39 17 0.15
40 11 0.10
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.34
Consensus pattern (35 bp):
AAATGTAGGTATGGTATTTCCCATACTGAGTTGAA
Found at i:83111593 original size:16 final size:17
Alignment explanation
Indices: 83111573--83111619 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
83111563 ATACATCATT
83111573 AAAAAAATTATAAAA-A
1 AAAAAAATTATAAAATA
*
83111589 CAAAAGATATT-TAAAATA
1 -AAAA-AAATTATAAAATA
83111607 AAAAAAATTATAA
1 AAAAAAATTATAA
83111620 TTCAATTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 4 0.16
17 16 0.64
18 5 0.20
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (17 bp):
AAAAAAATTATAAAATA
Found at i:83118554 original size:50 final size:51
Alignment explanation
Indices: 83118481--83118717 Score: 309
Period size: 51 Copynumber: 4.7 Consensus size: 51
83118471 TTCCCTTGCA
* * *
83118481 GCTGCTGATGGCTCCCCTGTTTCAGCCATTGAAGATGATTCCTTCCCTTTT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
* * *
83118532 GTTGATGATGACT-CCCTGTTTCAGCCATAGAAGATGGTTCTTTCCCTTTT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
* * *
83118582 GCTGATGATGACTCCCCTGTTTCAGCCATAGAATATGGTTCTTTCCCTTTT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
* * * *
83118633 GCTGCTGATGACTCCCATGTTTCAGCCATTGAAGAT-AGTTTTTTCCCTTGT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGA-TTCTTTCCCTTTT
* *
83118684 GCTGAAGATGACTCCCCTTTTTCAGCC-TTGAAGA
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGA
83118718 AAGAAAAAGA
Statistics
Matches: 165, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
50 53 0.32
51 112 0.68
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.38
Consensus pattern (51 bp):
GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
Done.