Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 289 of 292
Found at i:83458689 original size:83 final size:83
Alignment explanation
Indices: 83458550--83458707 Score: 266
Period size: 83 Copynumber: 1.9 Consensus size: 83
83458540 GCCCCCCACT
83458550 CCCTAAAATGAAAAATTGCAGCTTTAGACTCTCCAAAATTCATAAAATCCTAAGTTAATATATGG
1 CCCTAAAATGAAAAATTGCAGCTTTAGACTCTCCAAAATTCATAAAATCCTAAGTTAATATATGG
83458615 TAAA-ATTATAGTTTGCCC
66 -AAAGATTATAGTTTGCCC
* *
83458633 CCCTAAAATGAAAAATTGCAGCTTTAGAC-CATTCAAAATTCATAATATCCTAAGTTAATATATG
1 CCCTAAAATGAAAAATTGCAGCTTTAGACTC-TCCAAAATTCATAAAATCCTAAGTTAATATATG
83458697 GAAAGATTATA
65 GAAAGATTATA
83458708 CCCCAAATGC
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
82 4 0.06
83 67 0.94
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (83 bp):
CCCTAAAATGAAAAATTGCAGCTTTAGACTCTCCAAAATTCATAAAATCCTAAGTTAATATATGG
AAAGATTATAGTTTGCCC
Found at i:83468225 original size:14 final size:14
Alignment explanation
Indices: 83468206--83468232 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
83468196 TAGCTTATTA
83468206 TATTTTTAAATAAC
1 TATTTTTAAATAAC
83468220 TATTTTTAAATAA
1 TATTTTTAAATAA
83468233 AAATTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTTTTAAATAAC
Found at i:83471934 original size:195 final size:195
Alignment explanation
Indices: 83471561--83471963 Score: 503
Period size: 195 Copynumber: 2.0 Consensus size: 195
83471551 AGCTAAAAAC
* ***
83471561 AATCAAAGTCCCACCTGCATCTTTAAACTCCAAATGGGGAAATTTTTTTAAAAAATACCTTTACT
1 AATCGAAGTCCCACCTGCATCTTTAAACTCCAAATGGGGAAATAAATTTAAAAAATACCTTTACT
* * *
83471626 TATACTTAAAACTAGGAATTCAAAATTCAAAAATCAACATATACAATAAATTAATGAAGAAAGGA
66 TATACTTAAAACTACGAATTCAAAATTC----A-CAACATATACAACAAATTAATAAAGAAAGGA
*
83471691 AGAAAAACCCAGAAATTCAATCACAAAAAAAGAGCTAAAAAGGCATCAAAACTAAAATAATAATA
126 AGAAAAACCCAGAAACTCAATCACAAAAAAAGAGCTAAAAAGGCATCAAAA-T-AAA-AATAATA
83471756 ACTGGATT
188 ACTGGATT
* * * *
83471764 AATCGAAGTTCCACCTGCATCTTTAAACTCCAAATGGGGAAA-AAATTT-AAAGATCCCTTTATT
1 AATCGAAGTCCCACCTGCATCTTTAAACTCCAAATGGGGAAATAAATTTAAAAAATACCTTTACT
* * * *
83471827 TCTACTTAATAACTACGAATTCAAAA-TC-CAACATATACAACAATTTGATAAAGAAATGAAG-A
66 TATACTTAA-AACTACGAATTCAAAATTCACAACATATACAACAAATTAATAAAGAAAGGAAGAA
* *
83471889 AAACCCAGAAACTCAATCACAAAAAAGAGAGCT-AAAAGAGCATCAAAATTAAAATGATAACTGG
130 AAACCCAGAAACTCAATCACAAAAAA-AGAGCTAAAAAG-GCATCAAAATAAAAATAATAACTGG
83471953 ATT
193 ATT
83471956 AATCGAAG
1 AATCGAAG
83471964 ATCAAAGAAA
Statistics
Matches: 179, Mismatches: 18, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
192 22 0.12
193 2 0.01
194 32 0.18
195 43 0.24
201 22 0.12
202 18 0.10
203 40 0.22
ACGTcount: A:0.49, C:0.17, G:0.11, T:0.24
Consensus pattern (195 bp):
AATCGAAGTCCCACCTGCATCTTTAAACTCCAAATGGGGAAATAAATTTAAAAAATACCTTTACT
TATACTTAAAACTACGAATTCAAAATTCACAACATATACAACAAATTAATAAAGAAAGGAAGAAA
AACCCAGAAACTCAATCACAAAAAAAGAGCTAAAAAGGCATCAAAATAAAAATAATAACTGGATT
Found at i:83477721 original size:22 final size:22
Alignment explanation
Indices: 83477696--83477740 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
83477686 TAATTATGTA
* * *
83477696 TATTCTTTACTGTATGTTATTT
1 TATTATTTACTATATATTATTT
*
83477718 TATTATTTATTATATATTATTT
1 TATTATTTACTATATATTATTT
83477740 T
1 T
83477741 TAAACATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (22 bp):
TATTATTTACTATATATTATTT
Found at i:83479039 original size:98 final size:97
Alignment explanation
Indices: 83478823--83479050 Score: 225
Period size: 99 Copynumber: 2.3 Consensus size: 97
83478813 AAGTAAAATA
*
83478823 TTATTAGATATTATTATATAATAATTTAATAAATATATAAATTTATTGTCATAAATATATAATTT
1 TTATTATATATTATTA-AT-ATAATTTAA-AAATATATAAATTTATTGTCATAAATATATAATTT
* * *
83478888 TAATTATTATTTAATATAAAATAATTTAAATATGTT
63 TAATTATCATTT-ATATAAAATAATTAAAATATATT
* * *
83478924 TTATTATTTATTATTAATATAATTTAAAAATATTTAAAATTTATTG-CATATGAT-TATAATATT
1 TTATTATATATTATTAATATAATTTAAAAATATAT-AAATTTATTGTCATA-AATATAT-A-ATT
*
83478987 TTAATTATCATTT-TATAAAA-AA-TAAAATTTTATT
62 TTAATTATCATTTATATAAAATAATTAAAA-TATATT
*
83479021 TTATGT-TATATTATTTAATATTAATATAAA
1 TTAT-TATATATTA-TTAATA-TAATTTAAA
83479051 TTTAATTATT
Statistics
Matches: 109, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
96 4 0.04
97 16 0.15
98 28 0.26
99 30 0.28
100 17 0.16
101 14 0.13
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (97 bp):
TTATTATATATTATTAATATAATTTAAAAATATATAAATTTATTGTCATAAATATATAATTTTAA
TTATCATTTATATAAAATAATTAAAATATATT
Found at i:83479049 original size:104 final size:99
Alignment explanation
Indices: 83478834--83479056 Score: 245
Period size: 100 Copynumber: 2.2 Consensus size: 99
83478824 TATTAGATAT
*
83478834 TATTATATAATAATTTAATAAATATATAAATTTATTGTCATAAATATATAATTTTAATTATTATT
1 TATTA-AT-ATAATTTAATAAATATATAAATTTATTGTCATAAATATATAATTTTAATTATCATT
* * *
83478899 TAATATAAAATAATTTAAATATGTTTTATTATTTAT
64 TAATAAAAAATAATTTAAATATGTTATATTATTTAA
* *
83478935 TATTAATATAATTTAA-AAATATTTAAAATTTATTG-CATATGAT-TATAATATTTTAATTATCA
1 TATTAATATAATTTAATAAATATAT-AAATTTATTGTCATA-AATATAT-A-ATTTTAATTATCA
* **
83478997 TTTTATAAAAAATAAAATTTTATTTTATGTTATATTATTTAA
62 TTTAATAAAAAAT--AA-TTTA-AATATGTTATATTATTTAA
83479039 TATTAATATAAATTTAAT
1 TATTAATAT-AATTTAAT
83479057 TATTTATTTT
Statistics
Matches: 103, Mismatches: 9, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
98 14 0.14
99 22 0.21
100 25 0.24
101 5 0.05
102 2 0.02
103 4 0.04
104 24 0.23
105 7 0.07
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.51
Consensus pattern (99 bp):
TATTAATATAATTTAATAAATATATAAATTTATTGTCATAAATATATAATTTTAATTATCATTTA
ATAAAAAATAATTTAAATATGTTATATTATTTAA
Found at i:83479180 original size:18 final size:18
Alignment explanation
Indices: 83479157--83479196 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
83479147 AACACATATC
83479157 CACCGCTATTTCTAATCT
1 CACCGCTATTTCTAATCT
*
83479175 CACCGCTATTTTTAATCT
1 CACCGCTATTTCTAATCT
83479193 CACC
1 CACC
83479197 ACTACAGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.35, G:0.05, T:0.38
Consensus pattern (18 bp):
CACCGCTATTTCTAATCT
Found at i:83479259 original size:14 final size:14
Alignment explanation
Indices: 83479240--83479267 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83479230 AGCCTTAGTC
83479240 ACTCATTTCTAAAA
1 ACTCATTTCTAAAA
83479254 ACTCATTTCTAAAA
1 ACTCATTTCTAAAA
83479268 CGCTTTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (14 bp):
ACTCATTTCTAAAA
Found at i:83480020 original size:31 final size:31
Alignment explanation
Indices: 83479985--83480045 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
83479975 ATGAGTCAAC
*
83479985 TAAAAGGAATGTTGCCAAACTTGGTCACTCA
1 TAAAAGGAATGTTGCCAAACTTGATCACTCA
83480016 TAAAAGGAATGTTGCCAAACTTGATCACTC
1 TAAAAGGAATGTTGCCAAACTTGATCACTC
83480046 GATTCTAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (31 bp):
TAAAAGGAATGTTGCCAAACTTGATCACTCA
Found at i:83494036 original size:19 final size:20
Alignment explanation
Indices: 83494014--83494058 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
83494004 GTATCTTTCG
*
83494014 AATATCAAAGTCAAAC-TTA
1 AATATCAAAATCAAACATTA
*
83494033 AATAT-AAAATTAAACATTA
1 AATATCAAAATCAAACATTA
83494052 AA-ATCAA
1 AATATCAA
83494059 GTCCAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.60, C:0.11, G:0.02, T:0.27
Consensus pattern (20 bp):
AATATCAAAATCAAACATTA
Found at i:83502648 original size:20 final size:21
Alignment explanation
Indices: 83502623--83502665 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
83502613 TTTAAACTTA
83502623 AATTCAATTT-AATATTTTTC
1 AATTCAATTTCAATATTTTTC
*
83502643 AATTCAATTTCAATTTTTTTC
1 AATTCAATTTCAATATTTTTC
83502664 AA
1 AA
83502666 ATAAAACACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (21 bp):
AATTCAATTTCAATATTTTTC
Found at i:83509598 original size:28 final size:29
Alignment explanation
Indices: 83509550--83509619 Score: 92
Period size: 28 Copynumber: 2.4 Consensus size: 29
83509540 TAAATTAAAA
*
83509550 TTTTAACAAAAAAATTAATTTA-TT-TTT
1 TTTTAATAAAAAAATTAATTTACTTATTT
83509577 TAATTTAATAAAAAAATT-ATTTACTTATTT
1 T--TTTAATAAAAAAATTAATTTACTTATTT
83509607 TTTTAATAAAAAA
1 TTTTAATAAAAAA
83509620 TAAAATATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 1 0.03
28 17 0.45
29 16 0.42
30 4 0.11
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (29 bp):
TTTTAATAAAAAAATTAATTTACTTATTT
Found at i:83521680 original size:284 final size:273
Alignment explanation
Indices: 83521143--83522251 Score: 1131
Period size: 266 Copynumber: 4.0 Consensus size: 273
83521133 AAATCCCAAA
* * * * *
83521143 AGTATAATTGGTGCATAACAATATAGATTAGCAGTCAGGTCAGAAATTTAAACCCTAACAAAAAA
1 AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCT--CAAAAAA
* ** * * *
83521208 -AACTAATAAAGGTCAATTTTTTTTTTCACAATCTTCGATCCCTCATTC-A--AACAAATCTCCC
64 TAA--ACT-AA-GT-AA-TCCTTTTTTCACATTCTTCGATCCCTCATTCAACCAACCAATCTCCT
* * *
83521269 AAACCACAAAAATAATAAATCCCCATTAAA-AAGTAC-CAAAAAAAAATTACTTCGAACTTAAAC
123 AAACC-CAAAAATAATAAA-ACCCATTAAACAAGTACAAAAAAAAAAATTACTTCGAACTTAAAA
* * * * *
83521332 ACT-TAAAAAACATCAAATTAGAACCATTAAAAGAACAAACTTTAAAGCAAAATACCTTGAGGGT
186 ACTGAAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGC
* *
83521396 CTGATTGGAGTAGTAGATGGAGG
251 CTGATTGGAGGAGTAGATGAAGG
* * * * *
83521419 AGTGTAACTGATGCATAGCAAAATAAATTAACAGTCAGGTTAACAATTTAAACCCTAGCAAAAAA
1 AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCT--C-AAAAA
83521484 ATAAATCGTATAGGTAAATCCTTTTTTCACATTCTTCGATCCCTCATTCAACGCAACCAATCTCC
63 ATAAA-C-TA-A-GT-AATCCTTTTTTCACATTCTTCGATCCCTCATTCAAC-CAACCAATCTCC
* * **
83521549 TAAACCCCAAACTAATAAAACCCATTAAACAAGTACAAAAAAAAAAATTACTTTTAACTTAAAAA
122 TAAACCCAAAAATAATAAAACCCATTAAACAAGTACAAAAAAAAAAATTACTTCGAACTTAAAAA
*
83521614 CTGAAAAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTTAAGCAAAATACCTCGAGGG
187 CTG--AAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGG
* *
83521679 TCTGATTGGAGGAGTGGATGAAGG
250 CCTGATTGGAGGAGTAGATGAAGG
83521703 AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAA-CC-C------T-
1 AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTCAAAAAATA
* * *
83521759 AA-TAA-T--T-CTTTTATTCATATTCTTCGATCCCTCATTC-A--AACCAATCTCCTACACCCC
66 AACTAAGTAATCCTTTT-TTCACATTCTTCGATCCCTCATTCAACCAACCAATCTCCTAAACCCA
*
83521816 AAACTAATAAAAGCCCATTAAACAAGTACAAAAAAAAAAATTACTTCGAACTTAAAAGTTAAAAC
130 AAAATAATAAAA-CCCATTAAACAAGTACAAAAAAAAAAATTACTTCGAAC-------TTAAAA-
** *
83521881 ACAAAAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTGGAGGGC
186 ACTGAAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGC
*
83521946 CTGATTGGAGGACTAGATGAAGG
251 CTGATTGGAGGAGTAGATGAAGG
* *
83521969 AGTATAACTGGTGCATAACAAAATAAACTAGCAGTCAGGTTAGCAATTTTAACCCT-AATAAAA-
1 AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTCAA-AAAAT
* *
83522032 AAACCATAAAAGTCAATCCTTTTTTTTACACATTCTTCTATCCCTCATTCAATACAACCAATCTC
65 AAA-C-T--AAGT-AATCC--TTTTTT-CACATTCTTCGATCCCTCATTCAA-CCAACCAATCTC
* * * *
83522097 CTAAACCCCAAACTAATAAAAACCCATTAAAGAAGTACAAAAGAAAAACATTACTTCGAACTTAA
121 CTAAACCCAAAAATAAT-AAAACCCATTAAACAAGTACAAAA-AAAAAAATTACTTCGAACTTAA
* * * * * *
83522162 ACACCG--AAAAAAATTAAATTAGAACCGTTAAAAGAACAAGCATTAAAGCAAAATACCTCGAGC
184 AAACTGAAAAAAAAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGG
*
83522225 GCCTGATTGGAGGAGTGGATGAAGG
249 GCCTGATTGGAGGAGTAGATGAAGG
83522250 AG
1 AG
83522252 GAGGAGGGCG
Statistics
Matches: 714, Mismatches: 66, Indels: 101
0.81 0.07 0.11
Matches are distributed among these distances:
259 30 0.04
260 36 0.05
262 6 0.01
263 24 0.03
266 130 0.18
267 8 0.01
268 3 0.00
269 2 0.00
272 2 0.00
273 1 0.00
274 2 0.00
276 49 0.07
277 36 0.05
278 10 0.01
279 11 0.02
280 19 0.03
281 118 0.17
283 5 0.01
284 129 0.18
285 2 0.00
286 24 0.03
287 1 0.00
290 45 0.06
291 21 0.03
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (273 bp):
AGTATAACTGGTGCATAACAAAATAAATTAGCAGTCAGGTTAGCAATTTAAACCCTCAAAAAATA
AACTAAGTAATCCTTTTTTCACATTCTTCGATCCCTCATTCAACCAACCAATCTCCTAAACCCAA
AAATAATAAAACCCATTAAACAAGTACAAAAAAAAAAATTACTTCGAACTTAAAAACTGAAAAAA
AAATCAAATTAGAACCATTAAAAGAACAAACATTAAAGCAAAATACCTCGAGGGCCTGATTGGAG
GAGTAGATGAAGG
Found at i:83525464 original size:31 final size:32
Alignment explanation
Indices: 83525427--83525486 Score: 104
Period size: 31 Copynumber: 1.9 Consensus size: 32
83525417 CAAATTTAGC
83525427 AAGTAAAAAATATTTAAA-TAAAATTTTAAAA
1 AAGTAAAAAATATTTAAATTAAAATTTTAAAA
*
83525458 AAGTAAAAAATATTTAAATTATAATTTTA
1 AAGTAAAAAATATTTAAATTAAAATTTTA
83525487 GTGTTCGCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 18 0.67
32 9 0.33
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (32 bp):
AAGTAAAAAATATTTAAATTAAAATTTTAAAA
Found at i:83528294 original size:5 final size:5
Alignment explanation
Indices: 83528267--83528310 Score: 52
Period size: 5 Copynumber: 8.0 Consensus size: 5
83528257 ACGTTTAATG
83528267 TAAAA TAAACA TAAACA TAAAAA TAAAA TAAAA TAAAAA TAAAA
1 TAAAA TAAA-A TAAA-A T-AAAA TAAAA TAAAA T-AAAA TAAAA
83528311 ACAAAACAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
5 18 0.50
6 15 0.42
7 3 0.08
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (5 bp):
TAAAA
Found at i:83528297 original size:11 final size:11
Alignment explanation
Indices: 83528267--83528321 Score: 58
Period size: 11 Copynumber: 4.9 Consensus size: 11
83528257 ACGTTTAATG
*
83528267 TAAAATAAACA
1 TAAAATAAAAA
83528278 TAAACATAAAAA
1 TAAA-ATAAAAA
83528290 TAAAAT-AAAA
1 TAAAATAAAAA
83528300 TAAAAATAAAAA
1 T-AAAATAAAAA
* *
83528312 CAAAACAAAA
1 TAAAATAAAA
83528322 CAAAAATCCA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
10 5 0.13
11 19 0.50
12 14 0.37
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:83528308 original size:22 final size:22
Alignment explanation
Indices: 83528267--83528328 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
83528257 ACGTTTAATG
*
83528267 TAAAATAAACATAAACATAAAAA
1 TAAAATAAA-ATAAAAATAAAAA
83528290 TAAAATAAAATAAAAATAAAAA
1 TAAAATAAAATAAAAATAAAAA
* * *
83528312 CAAAACAAAACAAAAAT
1 TAAAATAAAATAAAAAT
83528329 CCAAAAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 26 0.74
23 9 0.26
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (22 bp):
TAAAATAAAATAAAAATAAAAA
Found at i:83528311 original size:6 final size:6
Alignment explanation
Indices: 83528268--83528316 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
83528258 CGTTTAATGT
* * *
83528268 AAAATA AACATA AACATA AAAAT- AAAAT- AAAATA AAAATA AAAACA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
83528314 AAA
1 AAA
83528317 CAAAACAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
5 10 0.26
6 29 0.74
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:83535157 original size:31 final size:31
Alignment explanation
Indices: 83535121--83535182 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
83535111 TTACAAAACG
83535121 GTCACTAAACTACT-AGAAAGTTTTCATTTAA
1 GTCACTAAACTACTCA-AAAGTTTTCATTTAA
* * *
83535152 GTCACTGAACTATTCAAAAGTTTTTATTTAA
1 GTCACTAAACTACTCAAAAGTTTTCATTTAA
83535183 ATCATTGAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.39
Consensus pattern (31 bp):
GTCACTAAACTACTCAAAAGTTTTCATTTAA
Found at i:83536563 original size:16 final size:17
Alignment explanation
Indices: 83536542--83536574 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
83536532 TTATTTAATT
83536542 TTTTAAAAT-TAAAAAA
1 TTTTAAAATATAAAAAA
83536558 TTTTAAAATATAAAAAA
1 TTTTAAAATATAAAAAA
83536575 ATTAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TTTTAAAATATAAAAAA
Found at i:83536650 original size:25 final size:25
Alignment explanation
Indices: 83536622--83536677 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
83536612 TTAACATTAC
* *
83536622 ATATATATATATT-TAAATTATAAAA
1 ATATATAT-TATTAAAAATAATAAAA
*
83536647 ATATAAATTATTAAAAATAATAAAA
1 ATATATATTATTAAAAATAATAAAA
*
83536672 TTATAT
1 ATATAT
83536678 TTTAACTCTG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
ATATATATTATTAAAAATAATAAAA
Found at i:83536653 original size:15 final size:16
Alignment explanation
Indices: 83536635--83536676 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
83536625 TATATATATT
83536635 TAAATTATAAAAAT-A
1 TAAATTATAAAAATAA
83536650 TAAATTATTAAAAATAA
1 TAAATTA-TAAAAATAA
83536667 TAAAATTATA
1 T-AAATTATA
83536677 TTTTAACTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.29
16 7 0.29
17 4 0.17
18 6 0.25
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAATTATAAAAATAA
Found at i:83537583 original size:16 final size:16
Alignment explanation
Indices: 83537543--83537585 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
83537533 GTTTGCAGGG
*
83537543 TTGGATCATTTCAAGA
1 TTGGATCATTTCAACA
*
83537559 TTAGATCATTTC-ACA
1 TTGGATCATTTCAACA
83537574 TTGGAGTCATTT
1 TTGGA-TCATTT
83537586 TTTGTTTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (16 bp):
TTGGATCATTTCAACA
Found at i:83542035 original size:23 final size:23
Alignment explanation
Indices: 83542008--83542051 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
83541998 TCGCCACTTC
83542008 TTTCAGTAGAAATTTCATTTTGA
1 TTTCAGTAGAAATTTCATTTTGA
83542031 TTTCAGTAGAAATTTCATTTT
1 TTTCAGTAGAAATTTCATTTT
83542052 CTTTTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50
Consensus pattern (23 bp):
TTTCAGTAGAAATTTCATTTTGA
Found at i:83546422 original size:30 final size:30
Alignment explanation
Indices: 83546358--83546415 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
83546348 ATTCAACTCG
83546358 AACTTGATTCATCAACATCTTTTAAATGCA
1 AACTTGATTCATCAACATCTTTTAAATGCA
83546388 AACTTGATTCATCAACATCTTTTAAATG
1 AACTTGATTCATCAACATCTTTTAAATG
83546416 TTAACTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTGATTCATCAACATCTTTTAAATGCA
Found at i:83548043 original size:2 final size:2
Alignment explanation
Indices: 83548006--83548031 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
83547996 TCATACTAGT
83548006 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
83548032 ACTCTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:83556888 original size:16 final size:16
Alignment explanation
Indices: 83556867--83556899 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
83556857 TCTTATTAAA
*
83556867 AATAGTTTTTCTTGAT
1 AATAGTTTCTCTTGAT
83556883 AATAGTTTCTCTTGAT
1 AATAGTTTCTCTTGAT
83556899 A
1 A
83556900 TATAATAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (16 bp):
AATAGTTTCTCTTGAT
Found at i:83559106 original size:22 final size:21
Alignment explanation
Indices: 83559077--83559124 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 21
83559067 TACAATTCGT
*
83559077 GCACAAAGGCTTGTAACCAAA
1 GCACAAAGGCTCGTAACCAAA
83559098 GTCACAAAGGCTCGTAACCAAA
1 G-CACAAAGGCTCGTAACCAAA
83559120 GCACA
1 GCACA
83559125 TAGAACAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.42, C:0.27, G:0.19, T:0.12
Consensus pattern (21 bp):
GCACAAAGGCTCGTAACCAAA
Found at i:83561811 original size:17 final size:17
Alignment explanation
Indices: 83561789--83561821 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
83561779 CTTTGAAATT
*
83561789 TCTAACTATGCACATAA
1 TCTAACTATACACATAA
83561806 TCTAACTATACACATA
1 TCTAACTATACACATA
83561822 TTAGATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.24, G:0.03, T:0.30
Consensus pattern (17 bp):
TCTAACTATACACATAA
Found at i:83564555 original size:138 final size:135
Alignment explanation
Indices: 83564174--83564641 Score: 450
Period size: 138 Copynumber: 3.4 Consensus size: 135
83564164 TTAATATTTG
* * *
83564174 TGATTGATTACC-GATTAGG-GTGATTAATGTCTATGTTACAAGACTCCGGTTTGTTTTTCTTTC
1 TGATTGATTACCAG-TT-GGAGTGATTAATGTCTATGTTACTAGACTCGGGTTTGTTTTTCTTTT
* * * *
83564237 AAAAA-AGT--CGTCATAGCCGAACCTCATAGTTTAGGGAATAGGGTGCTACACTTGTAAACCTA
64 AAAAAGA-TAATGTCATAGCCGAACCTCATAGTTTTGGGACTA-GGTGTTACACTTGTAAACCTA
*
83564299 CGGAATTGG
127 CGGAATTGA
* * * * * * * *
83564308 TGATTGATTA-CAGTTTGAGTAATCAATATTTGCGATTGATTAC-ACAATTCGGGTTTGCTTTTC
1 TGATTGATTACCAGTTGGAGTGAT-TA-ATGT-CTA-TG-TTACTA-GACTCGGGTTTGTTTTTC
* * * *
83564371 TTTCAAAAAAGTTATATGTCATAGCCGAACCTCATAGTTTTCGGACTAGAGTGTTACACTTGTGA
60 TTT-TAAAAAGATA-ATGTCATAGCCGAACCTCATAGTTTTGGGACTAG-GTGTTACACTTGTAA
83564436 ACCTACGGAATTGA
122 ACCTACGGAATTGA
* * *
83564450 TGATTGATTACCAGTTGG-GATGATTAATGTCTGTGTTACTTGACTCGGGTTTGTTTTTCTTTTG
1 TGATTGATTACCAGTTGGAG-TGATTAATGTCTATGTTACTAGACTCGGGTTTGTTTTTCTTTTA
* * *
83564514 AAAAGCATACATGTCATAGCGGAACCTCGTAGTTTTGGGACTAGG-GTTACACTTGTAAAACTAC
65 AAAAG-ATA-ATGTCATAGCCGAACCTCATAGTTTTGGGACTAGGTGTTACACTTGTAAACCTAC
*
83564578 AGAATTGA
128 GGAATTGA
* * *
83564586 TGATTGATTACCAATTGGAGTGATTAATGTCTATGCTACTCAGACTCGGATTTGTT
1 TGATTGATTACCAGTTGGAGTGATTAATGTCTATGTTACT-AGACTCGGGTTTGTT
83564642 CTCTCTACTG
Statistics
Matches: 271, Mismatches: 43, Indels: 37
0.77 0.12 0.11
Matches are distributed among these distances:
132 1 0.00
133 7 0.03
134 12 0.04
135 3 0.01
136 61 0.23
137 23 0.08
138 76 0.28
139 8 0.03
140 1 0.00
141 4 0.01
142 66 0.24
143 9 0.03
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (135 bp):
TGATTGATTACCAGTTGGAGTGATTAATGTCTATGTTACTAGACTCGGGTTTGTTTTTCTTTTAA
AAAGATAATGTCATAGCCGAACCTCATAGTTTTGGGACTAGGTGTTACACTTGTAAACCTACGGA
ATTGA
Found at i:83565238 original size:20 final size:22
Alignment explanation
Indices: 83565213--83565271 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 22
83565203 TTTACATGAT
83565213 TGGTAAC-T-GAATTAATTTAA
1 TGGTAACTTAGAATTAATTTAA
83565233 TGGTAAACTTTAGAATTAATTTAA
1 TGGT-AAC-TTAGAATTAATTTAA
83565257 TGGTAAACTTTAGAA
1 TGGT-AAC-TTAGAA
83565272 ATAGTCACTC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.11
21 3 0.09
23 1 0.03
24 27 0.77
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (22 bp):
TGGTAACTTAGAATTAATTTAA
Found at i:83565250 original size:24 final size:24
Alignment explanation
Indices: 83565221--83565271 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
83565211 ATTGGTAACT
83565221 GAATTAATTTAATGGTAAACTTTA
1 GAATTAATTTAATGGTAAACTTTA
83565245 GAATTAATTTAATGGTAAACTTTA
1 GAATTAATTTAATGGTAAACTTTA
83565269 GAA
1 GAA
83565272 ATAGTCACTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.43, C:0.04, G:0.14, T:0.39
Consensus pattern (24 bp):
GAATTAATTTAATGGTAAACTTTA
Found at i:83576675 original size:40 final size:43
Alignment explanation
Indices: 83576631--83576722 Score: 100
Period size: 47 Copynumber: 2.1 Consensus size: 43
83576621 AAAGGTTGAC
83576631 TTCAA-TTAATCAA-AA-AAGCTTTAAAGATTATCATTCTAGT
1 TTCAAGTTAATCAATAAGAAGCTTTAAAGATTATCATTCTAGT
* * *
83576671 TTCAACTAAGTTGATGAATAAGAAGTTTTAAAGATTATCATTCTAGT
1 TT---C-AAGTTAATCAATAAGAAGCTTTAAAGATTATCATTCTAGT
83576718 TTCAA
1 TTCAA
83576723 CTAAGTTGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
40 2 0.05
43 3 0.07
44 3 0.07
45 6 0.14
46 2 0.05
47 26 0.62
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (43 bp):
TTCAAGTTAATCAATAAGAAGCTTTAAAGATTATCATTCTAGT
Found at i:83576704 original size:47 final size:47
Alignment explanation
Indices: 83576650--83576744 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
83576640 TCAAAAAAGC
83576650 TTTAAAGATTATCATTCTAGTTTCAACTAAGTTGATGAATAAGAAGT
1 TTTAAAGATTATCATTCTAGTTTCAACTAAGTTGATGAATAAGAAGT
83576697 TTTAAAGATTATCATTCTAGTTTCAACTAAGTTGATGAATAAGAAGT
1 TTTAAAGATTATCATTCTAGTTTCAACTAAGTTGATGAATAAGAAGT
83576744 T
1 T
83576745 AACTTTTAGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.39
Consensus pattern (47 bp):
TTTAAAGATTATCATTCTAGTTTCAACTAAGTTGATGAATAAGAAGT
Found at i:83579809 original size:33 final size:33
Alignment explanation
Indices: 83579758--83579848 Score: 155
Period size: 33 Copynumber: 2.8 Consensus size: 33
83579748 TTTCTTCTTG
*
83579758 ACATTCCAGCTACTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
* *
83579791 ACATTCCAACTCCCGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
83579824 ACATTCCAGCTCCTGTCCAGCAACC
1 ACATTCCAGCTCCTGTCCAGCAACC
83579849 TGAAACAGAG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.31, C:0.43, G:0.09, T:0.18
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
Found at i:83582650 original size:25 final size:25
Alignment explanation
Indices: 83582616--83582665 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
83582606 GGAGCAAAAA
83582616 ATACATGATCTCGTCAAGAGACAAG
1 ATACATGATCTCGTCAAGAGACAAG
83582641 ATACATGATCTCGTCAAGAGACAAG
1 ATACATGATCTCGTCAAGAGACAAG
83582666 TTCTCTAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (25 bp):
ATACATGATCTCGTCAAGAGACAAG
Found at i:83586029 original size:23 final size:23
Alignment explanation
Indices: 83586011--83586054 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
83586001 ACATTAAAGT
* *
83586011 AAACTCAGGTACTAAATTAAAAA
1 AAACTCAAGTACCAAATTAAAAA
83586034 AAACTCAAGTACCAAATTAAA
1 AAACTCAAGTACCAAATTAAA
83586055 CATTGAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.57, C:0.16, G:0.07, T:0.20
Consensus pattern (23 bp):
AAACTCAAGTACCAAATTAAAAA
Found at i:83603363 original size:11 final size:11
Alignment explanation
Indices: 83603347--83603376 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
83603337 TAACATTAAG
83603347 AATATATATAT
1 AATATATATAT
*
83603358 AATATAAATAT
1 AATATATATAT
83603369 AATATATA
1 AATATATA
83603377 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:83603926 original size:17 final size:17
Alignment explanation
Indices: 83603906--83603944 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
83603896 AAAAAAATAA
*
83603906 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
83603923 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
83603940 AAAAT
1 AAAAT
83603945 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:83611074 original size:35 final size:35
Alignment explanation
Indices: 83611024--83611137 Score: 120
Period size: 35 Copynumber: 3.3 Consensus size: 35
83611014 CATAGGTAAG
* * *
83611024 TACATGTAAGCTTATATTGAACTTGTATAATCGGT
1 TACATGTGAGCTTATATTGAATTTGTATATTCGGT
* * * * *
83611059 TGCATGTGAGGTTATATTAAATTTGAATATTCGAT
1 TACATGTGAGCTTATATTGAATTTGTATATTCGGT
* *
83611094 TACATGTGAGTTTATATTGAATTTGTGTATTCGGT
1 TACATGTGAGCTTATATTGAATTTGTATATTCGGT
* *
83611129 CATATGTGA
1 TACATGTGA
83611138 AGTTAACTTG
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 63 1.00
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (35 bp):
TACATGTGAGCTTATATTGAATTTGTATATTCGGT
Found at i:83614100 original size:19 final size:19
Alignment explanation
Indices: 83614078--83614118 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
83614068 TTGAACCAAC
83614078 AATTTAATCAAAAAACAAT
1 AATTTAATCAAAAAACAAT
83614097 AATTTAATCAAAAAACAAT
1 AATTTAATCAAAAAACAAT
83614116 AAT
1 AAT
83614119 CTAACCAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (19 bp):
AATTTAATCAAAAAACAAT
Found at i:83618028 original size:22 final size:25
Alignment explanation
Indices: 83617997--83618043 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
83617987 GTTAACAATT
83617997 AAACTTAAATT-TT-AAAATAAAAA
1 AAACTTAAATTATTAAAAATAAAAA
83618020 AAAC-TAAATTATTAAAAATAAAAA
1 AAACTTAAATTATTAAAAATAAAAA
83618044 TACATAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 6 0.27
24 10 0.45
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (25 bp):
AAACTTAAATTATTAAAAATAAAAA
Found at i:83621758 original size:17 final size:17
Alignment explanation
Indices: 83621736--83621768 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
83621726 GTAAAAAAAT
83621736 ATAATTT-TATTATTTTA
1 ATAATTTATA-TATTTTA
83621753 ATAATTTATATATTTT
1 ATAATTTATATATTTT
83621769 TAATTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATAATTTATATATTTTA
Found at i:83621769 original size:26 final size:26
Alignment explanation
Indices: 83621734--83621784 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
83621724 TAGTAAAAAA
83621734 ATATAATTTT-ATTATTTTAATAATTT
1 ATATAATTTTAATTATTTTAA-AATTT
* *
83621760 ATATATTTTTAATTTTTTTAAAATT
1 ATATAATTTTAATTATTTTAAAATT
83621785 AAATTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (26 bp):
ATATAATTTTAATTATTTTAAAATTT
Found at i:83625744 original size:3 final size:3
Alignment explanation
Indices: 83625736--83625772 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
83625726 TGTTAAACGT
83625736 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
83625773 TTATCCAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:83634233 original size:16 final size:16
Alignment explanation
Indices: 83634212--83634242 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83634202 ATTTGGATAG
83634212 TTATTTTAGATTTAAA
1 TTATTTTAGATTTAAA
*
83634228 TTATTTTAGGTTTAA
1 TTATTTTAGATTTAA
83634243 GTGATTAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (16 bp):
TTATTTTAGATTTAAA
Found at i:83638964 original size:24 final size:24
Alignment explanation
Indices: 83638928--83638978 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
83638918 TCTTTTAAAT
83638928 TTTTAGGAATTTTAAGAATATA-TA
1 TTTTAGGAATTTTAAGAAT-TAGTA
*
83638952 TTTTA-GAATTTTTAGGAATTAGTA
1 TTTTAGGAA-TTTTAAGAATTAGTA
83638976 TTT
1 TTT
83638979 CTAAAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (24 bp):
TTTTAGGAATTTTAAGAATTAGTA
Found at i:83645527 original size:16 final size:16
Alignment explanation
Indices: 83645506--83645553 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
83645496 TCAAATAATG
83645506 ATTTAAACTTAAAATA
1 ATTTAAACTTAAAATA
83645522 ATTTAAA-TTCAAAATA
1 ATTTAAACTT-AAAATA
* *
83645538 ATTTAAGCTCAAAATA
1 ATTTAAACTTAAAATA
83645554 TTAAATATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 2 0.07
16 25 0.89
17 1 0.04
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.35
Consensus pattern (16 bp):
ATTTAAACTTAAAATA
Found at i:83645951 original size:2 final size:2
Alignment explanation
Indices: 83645944--83645971 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
83645934 TCTCCCATTC
83645944 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83645972 TAAATATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83650663 original size:6 final size:6
Alignment explanation
Indices: 83650652--83650678 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
83650642 ATGCCAACGA
83650652 CAGCGG CAGCGG CAGCGG CAGCGG CAG
1 CAGCGG CAGCGG CAGCGG CAGCGG CAG
83650679 AGTGATACAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.48, T:0.00
Consensus pattern (6 bp):
CAGCGG
Found at i:83656216 original size:26 final size:29
Alignment explanation
Indices: 83656161--83656218 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 29
83656151 CAAAAAATGC
*
83656161 AATGACTAAAATTGACTAAATTAAAGTAT
1 AATGACTAAAATTGAATAAATTAAAGTAT
*
83656190 AATGACT-AAATT-AATAATTTAAA-TAT
1 AATGACTAAAATTGAATAAATTAAAGTAT
83656216 AAT
1 AAT
83656219 TCAATGACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 6 0.22
27 9 0.33
28 5 0.19
29 7 0.26
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.34
Consensus pattern (29 bp):
AATGACTAAAATTGAATAAATTAAAGTAT
Found at i:83656844 original size:23 final size:21
Alignment explanation
Indices: 83656812--83656876 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 21
83656802 GAACCAAAAT
83656812 TTAATTATAATTT-TTTTATAGA
1 TTAATTATAATTTATTTTAT--A
83656834 TTAATATATAAGTTTATTTTATA
1 TTAAT-TATAA-TTTATTTTATA
83656857 TTAATTTATAATTTCATTTT
1 TTAA-TTATAATTT-ATTTT
83656877 TAGGAGGACT
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
22 8 0.21
23 20 0.53
24 4 0.11
25 6 0.16
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (21 bp):
TTAATTATAATTTATTTTATA
Found at i:83656950 original size:51 final size:51
Alignment explanation
Indices: 83656846--83656944 Score: 117
Period size: 53 Copynumber: 1.9 Consensus size: 51
83656836 AATATATAAG
* * * *
83656846 TTTATTTTATATTAATTTATAATTTCATTTTTAGGAGGACTAAATTGTAAT
1 TTTATTATATATCAATTTATAATTTCATTTATAAGAGGACTAAATTGTAAT
* * *
83656897 TTTATTATATATCAATTTACTTATTTTTATTTATAAGAGGACTGAATT
1 TTTATTATATATCAATTTA--TAATTTCATTTATAAGAGGACTAAATT
83656945 TATTTTGGGG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
51 17 0.44
53 22 0.56
ACGTcount: A:0.33, C:0.05, G:0.09, T:0.53
Consensus pattern (51 bp):
TTTATTATATATCAATTTATAATTTCATTTATAAGAGGACTAAATTGTAAT
Found at i:83657127 original size:16 final size:16
Alignment explanation
Indices: 83657106--83657145 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
83657096 ATGTGTTAAG
83657106 ATCATTTTAGAG-TTGA
1 ATCATTTTA-AGTTTGA
83657122 ATCATTTTAAGTTTGA
1 ATCATTTTAAGTTTGA
*
83657138 ATAATTTT
1 ATCATTTT
83657146 TTTGAATTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.09
16 20 0.91
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (16 bp):
ATCATTTTAAGTTTGA
Found at i:83657280 original size:2 final size:2
Alignment explanation
Indices: 83657268--83657297 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
83657258 ATAATTATTC
*
83657268 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83657298 TGTACACTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:83659524 original size:24 final size:24
Alignment explanation
Indices: 83659497--83659543 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
83659487 CACCAGCACT
* *
83659497 AGCTCTTCCACCTGCACCTCCTCC
1 AGCTCCTCCACCTACACCTCCTCC
*
83659521 AGCTCCTCCACCTACGCCTCCTC
1 AGCTCCTCCACCTACACCTCCTC
83659544 TAGCACCACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.13, C:0.55, G:0.09, T:0.23
Consensus pattern (24 bp):
AGCTCCTCCACCTACACCTCCTCC
Found at i:83659555 original size:24 final size:24
Alignment explanation
Indices: 83659504--83659581 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
83659494 ACTAGCTCTT
* * *
83659504 CCACCTGCACCTCCTCCAGCTCCT
1 CCACCTACACCTCCTCCAGCACCA
* *
83659528 CCACCTACGCCTCCTCTAGCACCA
1 CCACCTACACCTCCTCCAGCACCA
*
83659552 CCACC-AC-CACTACCACCAGCACCA
1 CCACCTACAC-CT-CCTCCAGCACCA
*
83659576 GCACCT
1 CCACCT
83659582 CTACTAGCTC
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
22 1 0.02
23 4 0.09
24 38 0.88
ACGTcount: A:0.22, C:0.56, G:0.08, T:0.14
Consensus pattern (24 bp):
CCACCTACACCTCCTCCAGCACCA
Found at i:83660226 original size:32 final size:31
Alignment explanation
Indices: 83660190--83660262 Score: 78
Period size: 32 Copynumber: 2.3 Consensus size: 31
83660180 ATCTGCTTAC
83660190 ATTTTTATAGTTTTTAAAATGATTAAA-T-TAA
1 ATTTTTATAGTTTTTAAAA-G-TTAAACTATAA
* *
83660221 AATTTTAGTATTTTTTAAAAGTTAAACTATAA
1 ATTTTTA-TAGTTTTTAAAAGTTAAACTATAA
83660253 ATTTATTATA
1 ATTT-TTATA
83660263 TATTAACTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
30 5 0.14
31 8 0.23
32 19 0.54
33 3 0.09
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.51
Consensus pattern (31 bp):
ATTTTTATAGTTTTTAAAAGTTAAACTATAA
Found at i:83660235 original size:31 final size:30
Alignment explanation
Indices: 83660192--83660256 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
83660182 CTGCTTACAT
*
83660192 TTTTATAGTTTTTAAAATGATTAAATTA-AAA
1 TTTTATAGTTTTTAAAA-G-TTAAACTATAAA
*
83660223 TTTTAGTATTTTTTAAAAGTTAAACTATAAA
1 TTTTA-TAGTTTTTAAAAGTTAAACTATAAA
83660254 TTT
1 TTT
83660257 ATTATATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 7 0.23
31 12 0.40
32 11 0.37
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.51
Consensus pattern (30 bp):
TTTTATAGTTTTTAAAAGTTAAACTATAAA
Found at i:83661983 original size:9 final size:9
Alignment explanation
Indices: 83661942--83662081 Score: 59
Period size: 9 Copynumber: 15.2 Consensus size: 9
83661932 TCCTCCAATT
83661942 CCTCCACCA
1 CCTCCACCA
* *
83661951 GCACCACCA
1 CCTCCACCA
*
83661960 CCACCACCGA
1 CCTCCACC-A
*
83661970 -ATCCACCA
1 CCTCCACCA
83661978 CCTCCACCTACA
1 CCTCCA-C--CA
*
83661990 CCTCCTCCA
1 CCTCCACCA
*
83661999 ACTCCACCA
1 CCTCCACCA
83662008 CC-CGCACCA
1 CCTC-CACCA
***
83662017 CCTCCAATT
1 CCTCCACCA
* *
83662026 CCTCCTCCT
1 CCTCCACCA
* * *
83662035 CCACCAGCT
1 CCTCCACCA
*
83662044 CCTCCTCCA
1 CCTCCACCA
*
83662053 ACTCCACCA
1 CCTCCACCA
*
83662062 CCTGCACCA
1 CCTCCACCA
*
83662071 CCCCCACCA
1 CCTCCACCA
83662080 CC
1 CC
83662082 AAGCCCTCCT
Statistics
Matches: 95, Mismatches: 29, Indels: 14
0.69 0.21 0.10
Matches are distributed among these distances:
8 2 0.02
9 82 0.86
10 3 0.03
11 1 0.01
12 7 0.07
ACGTcount: A:0.23, C:0.61, G:0.04, T:0.13
Consensus pattern (9 bp):
CCTCCACCA
Found at i:83662008 original size:24 final size:24
Alignment explanation
Indices: 83661981--83662069 Score: 61
Period size: 24 Copynumber: 3.5 Consensus size: 24
83661971 TCCACCACCT
83661981 CCACCTACACCTCCTCCAACTCCA
1 CCACCTACACCTCCTCCAACTCCA
** * * *
83662005 CCACCCGCACCACCTCCAATTCCT
1 CCACCTACACCTCCTCCAACTCCA
*
83662029 CCTCCTCCACCAGCTCCTCCTCCAACTCCA
1 CCACCT--A-CA---CCTCCTCCAACTCCA
*
83662059 CCACCTGCACC
1 CCACCTACACC
83662070 ACCCCCACCA
Statistics
Matches: 46, Mismatches: 13, Indels: 12
0.65 0.18 0.17
Matches are distributed among these distances:
24 25 0.54
27 4 0.09
30 17 0.37
ACGTcount: A:0.20, C:0.60, G:0.03, T:0.17
Consensus pattern (24 bp):
CCACCTACACCTCCTCCAACTCCA
Found at i:83662081 original size:42 final size:42
Alignment explanation
Indices: 83662035--83662135 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 42
83662025 TCCTCCTCCT
* *
83662035 CCACCAGCTCCTCCTCCAACTCCACCACCTGCACCACCCCCA
1 CCACCAGCTCCTCCTCCAACACCACCACCTGCACCACCACCA
* * * *
83662077 CCACCAAGC-CCTCCTCCAAGACCGCCACCTGCTCCAGCACCA
1 CCACC-AGCTCCTCCTCCAACACCACCACCTGCACCACCACCA
*
83662119 CCACCAGCTCCACCTCC
1 CCACCAGCTCCTCCTCC
83662136 TAAACCGGCA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 3 0.06
42 44 0.88
43 3 0.06
ACGTcount: A:0.22, C:0.59, G:0.08, T:0.11
Consensus pattern (42 bp):
CCACCAGCTCCTCCTCCAACACCACCACCTGCACCACCACCA
Found at i:83662170 original size:24 final size:24
Alignment explanation
Indices: 83662143--83662376 Score: 133
Period size: 24 Copynumber: 9.5 Consensus size: 24
83662133 TCCTAAACCG
*
83662143 GCACCGCCACCAAGCCCTCCTCCA
1 GCACCACCACCAAGCCCTCCTCCA
* *
83662167 GCACCCCCACCTCCACCGGCTCCTCCTCCTA
1 GCA---CCACCACCA--AGC-CCTCCTCC-A
*
83662198 -AACCACCACCAAGCCCTCCTCCA
1 GCACCACCACCAAGCCCTCCTCCA
*
83662221 GCACCACCACC-A--CCTCCTAAACCG
1 GCACCACCACCAAGCCCTCCT---CCA
* *
83662245 GCACCCCCGCCAAGCCCTCCTCCA
1 GCACCACCACCAAGCCCTCCTCCA
*
83662269 GCACCACCACCTAATCCAC-CC-CCA
1 GCACCACCACC-AAGCC-CTCCTCCA
* * * * *
83662293 CCGCCGCCTCCAAGCCCTCCTCCT
1 GCACCACCACCAAGCCCTCCTCCA
* *
83662317 GCACCCCCACC-AGCTCCACCTCCTA
1 GCACCACCACCAAGC-CCTCCTCC-A
*
83662342 -AACCACCACCAAGCCCTCCTCCA
1 GCACCACCACCAAGCCCTCCTCCA
*
83662365 GCACCAGCACCA
1 GCACCACCACCA
83662377 CCACCAAAAC
Statistics
Matches: 157, Mismatches: 31, Indels: 44
0.68 0.13 0.19
Matches are distributed among these distances:
21 6 0.04
22 1 0.01
23 12 0.08
24 92 0.59
25 12 0.08
26 1 0.01
27 21 0.13
29 2 0.01
30 9 0.06
31 1 0.01
ACGTcount: A:0.22, C:0.59, G:0.09, T:0.10
Consensus pattern (24 bp):
GCACCACCACCAAGCCCTCCTCCA
Found at i:83662207 original size:30 final size:30
Alignment explanation
Indices: 83662114--83662208 Score: 86
Period size: 30 Copynumber: 3.2 Consensus size: 30
83662104 CCTGCTCCAG
* **
83662114 CACCACCACCAGCTCCACCTCCTAAACCGG
1 CACCACCACCAGCTCCTCCTCCTAAACCAC
* * *
83662144 CACCGCCACCAAGC-CCTCCTCC-AGCACCCC
1 CACCACCACC-AGCTCCTCCTCCTA-AACCAC
* *
83662174 CACCTCCACCGGCTCCTCCTCCTAAACCAC
1 CACCACCACCAGCTCCTCCTCCTAAACCAC
83662204 CACCA
1 CACCA
83662209 AGCCCTCCTC
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
29 3 0.06
30 44 0.86
31 4 0.08
ACGTcount: A:0.23, C:0.58, G:0.08, T:0.11
Consensus pattern (30 bp):
CACCACCACCAGCTCCTCCTCCTAAACCAC
Found at i:83662215 original size:21 final size:21
Alignment explanation
Indices: 83662191--83662243 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
83662181 ACCGGCTCCT
*
83662191 CCTCCTAAACCACCACCAAGC-
1 CCTCCTAAACCACCACC-ACCA
** *
83662212 CCTCCTCCAGCACCACCACCA
1 CCTCCTAAACCACCACCACCA
83662233 CCTCCTAAACC
1 CCTCCTAAACC
83662244 GGCACCCCCG
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.28, C:0.57, G:0.04, T:0.11
Consensus pattern (21 bp):
CCTCCTAAACCACCACCACCA
Found at i:83662306 original size:48 final size:48
Alignment explanation
Indices: 83662108--83662376 Score: 166
Period size: 48 Copynumber: 5.4 Consensus size: 48
83662098 CCGCCACCTG
* *
83662108 CTCCAGCACCACCACCAGCTCCACCTCCTAAACCGGCACCGCCACCAAGCCCTC
1 CTCCAGCACCACCACCAGATCCACCTCCCAAA-C--CA---CCACCAAGCCCTC
* * * *
83662162 CTCCAGCACCCCCACCTCCACCGGCTCCTCCTCCTAAACCACCACCAAGCCCTC
1 CTCCAGCA---CCA---CCACCAGATCCACCTCCCAAACCACCACCAAGCCCTC
** ** *** * *
83662216 CTCCAGCACCACCACCACCTCCTA-AACCGGCACCCCCGCCAAGCCCTC
1 CTCCAGCACCACCACCAGATCC-ACCTCCCAAACCACCACCAAGCCCTC
** * *
83662264 CTCCAGCACCACCACCTA-ATCCACC-CCCACCGCCGCCTCCAAGCCCTC
1 CTCCAGCACCACCACC-AGATCCACCTCCCA-AACCACCACCAAGCCCTC
* * * *
83662312 CTCCTGCACCCCCACCAGCTCCACCTCCTAAACCACCACCAAGCCCTC
1 CTCCAGCACCACCACCAGATCCACCTCCCAAACCACCACCAAGCCCTC
*
83662360 CTCCAGCACCAGCACCA
1 CTCCAGCACCACCACCA
83662377 CCACCAAAAC
Statistics
Matches: 173, Mismatches: 30, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
47 4 0.02
48 108 0.62
49 4 0.02
51 3 0.02
54 29 0.17
57 5 0.03
59 1 0.01
60 19 0.11
ACGTcount: A:0.23, C:0.58, G:0.09, T:0.10
Consensus pattern (48 bp):
CTCCAGCACCACCACCAGATCCACCTCCCAAACCACCACCAAGCCCTC
Found at i:83665247 original size:61 final size:61
Alignment explanation
Indices: 83665152--83665274 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
83665142 TGGTGTTAAT
*
83665152 ACCATACATTACCTCGATTTTACTAGGTCAATATCGCCACTAATATTATACAATATTTGTA
1 ACCATACATTACCTCGATTTTACTAGGTCAATATCACCACTAATATTATACAATATTTGTA
83665213 ACCATACATTACCTCGATTTTACTAGGTCAATATCACCACTAATATTATACAATATTTGTA
1 ACCATACATTACCTCGATTTTACTAGGTCAATATCACCACTAATATTATACAATATTTGTA
83665274 A
1 A
83665275 GATTATTTCA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (61 bp):
ACCATACATTACCTCGATTTTACTAGGTCAATATCACCACTAATATTATACAATATTTGTA
Found at i:83670521 original size:16 final size:16
Alignment explanation
Indices: 83670450--83670521 Score: 92
Period size: 16 Copynumber: 4.6 Consensus size: 16
83670440 ACAACTGAAT
* *
83670450 TATT-CATTATAGGTC
1 TATTCCATTACAGCTC
*
83670465 TATTCTATTACAGCTC
1 TATTCCATTACAGCTC
*
83670481 TATTCCATTACAACTC
1 TATTCCATTACAGCTC
*
83670497 TATTACATTACAGCTC
1 TATTCCATTACAGCTC
83670513 TATTCCATT
1 TATTCCATT
83670522 CCTCCCAACC
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 4 0.08
16 44 0.92
ACGTcount: A:0.28, C:0.24, G:0.06, T:0.43
Consensus pattern (16 bp):
TATTCCATTACAGCTC
Found at i:83677720 original size:23 final size:23
Alignment explanation
Indices: 83677654--83677720 Score: 57
Period size: 23 Copynumber: 2.8 Consensus size: 23
83677644 ATTAAAATAT
*
83677654 TAATATTTTAAAAAATTTTAAATTTA
1 TAAT-TTTTATAAAA-TTT-AATTTA
* *
83677680 -AA-TTTTATCATATATTAATTTA
1 TAATTTTTATAAAAT-TTAATTTA
83677702 TAATTTTTATAAAATTTAA
1 TAATTTTTATAAAATTTAA
83677721 AATGAAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 9
0.70 0.11 0.19
Matches are distributed among these distances:
22 7 0.21
23 15 0.45
24 9 0.27
25 2 0.06
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (23 bp):
TAATTTTTATAAAATTTAATTTA
Found at i:83678144 original size:2 final size:2
Alignment explanation
Indices: 83678139--83678176 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
83678129 GCGCACACAC
83678139 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83678177 TTAACAACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83680751 original size:5 final size:6
Alignment explanation
Indices: 83680734--83680758 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
83680724 CCCTCACCAC
83680734 ACAAAA ACAAAA ACAAAA ACAAAA A
1 ACAAAA ACAAAA ACAAAA ACAAAA A
83680759 ATAGAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (6 bp):
ACAAAA
Found at i:83681285 original size:30 final size:31
Alignment explanation
Indices: 83681251--83681308 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
83681241 ACTTAACAAG
*
83681251 CAAATGCTTTTAAAATAATAA-AAAATTTAA
1 CAAATGCCTTTAAAATAATAAGAAAATTTAA
83681281 CAAATGCCTTTAAAATAATAAGAAAATT
1 CAAATGCCTTTAAAATAATAAGAAAATT
83681309 AATAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.55, C:0.09, G:0.05, T:0.31
Consensus pattern (31 bp):
CAAATGCCTTTAAAATAATAAGAAAATTTAA
Found at i:83689491 original size:16 final size:18
Alignment explanation
Indices: 83689459--83689491 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83689449 ATTAATAAAA
83689459 TAAATTTAGTGTTAATTG
1 TAAATTTAGTGTTAATTG
83689477 TAAATTT-GT-TTAATT
1 TAAATTTAGTGTTAATT
83689492 TTACGTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (18 bp):
TAAATTTAGTGTTAATTG
Found at i:83699574 original size:73 final size:73
Alignment explanation
Indices: 83699475--83699613 Score: 208
Period size: 73 Copynumber: 1.9 Consensus size: 73
83699465 TATATATTTC
* * * *
83699475 TATATATTCGATTTTGAGTGTCTTCTTCC-ATGAATTTTAAGGATCTTTGGAGGGCCGTATCTCA
1 TATATATCCGATTTCGAGTATCTTCTTCCTA-GAATTTTAAGGATCTTTGGAGGGCCATATCTCA
83699539 ATGAGGGTA
65 ATGAGGGTA
* *
83699548 TATATATCCGATTTCGAGTATGTTCTTCCTAGAATTTTAAGGATCTTTGGAGGGTCATATCTCAA
1 TATATATCCGATTTCGAGTATCTTCTTCCTAGAATTTTAAGGATCTTTGGAGGGCCATATCTCAA
83699613 T
66 T
83699614 ATACGAACAC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 58 0.98
74 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40
Consensus pattern (73 bp):
TATATATCCGATTTCGAGTATCTTCTTCCTAGAATTTTAAGGATCTTTGGAGGGCCATATCTCAA
TGAGGGTA
Found at i:83731624 original size:13 final size:13
Alignment explanation
Indices: 83731606--83731630 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83731596 CAAATTGAGC
83731606 AAAGTTTTGCTTG
1 AAAGTTTTGCTTG
83731619 AAAGTTTTGCTT
1 AAAGTTTTGCTT
83731631 CTTGATAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
AAAGTTTTGCTTG
Found at i:83742126 original size:5 final size:6
Alignment explanation
Indices: 83742113--83742170 Score: 80
Period size: 6 Copynumber: 9.3 Consensus size: 6
83742103 ATAATTTAAT
* *
83742113 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
83742163 AAATAA AA
1 AAATAA AA
83742171 CATATAATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
6 43 0.90
8 5 0.10
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:83742234 original size:9 final size:9
Alignment explanation
Indices: 83742189--83742247 Score: 64
Period size: 9 Copynumber: 6.6 Consensus size: 9
83742179 TTTATACAAA
*
83742189 TAATTCGGT
1 TAATTCGAT
* *
83742198 TAATTTGAG
1 TAATTCGAT
**
83742207 TAATTCGGG
1 TAATTCGAT
*
83742216 TAATTTGAT
1 TAATTCGAT
83742225 TAATTCGAT
1 TAATTCGAT
83742234 TAATTCGAT
1 TAATTCGAT
83742243 TAATT
1 TAATT
83742248 AAGTTTATTT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.46
Consensus pattern (9 bp):
TAATTCGAT
Found at i:83742243 original size:18 final size:18
Alignment explanation
Indices: 83742189--83742247 Score: 82
Period size: 18 Copynumber: 3.3 Consensus size: 18
83742179 TTTATACAAA
*
83742189 TAATTCGGTTAATTTGAG
1 TAATTCGGTTAATTTGAT
*
83742207 TAATTCGGGTAATTTGAT
1 TAATTCGGTTAATTTGAT
* *
83742225 TAATTCGATTAATTCGAT
1 TAATTCGGTTAATTTGAT
83742243 TAATT
1 TAATT
83742248 AAGTTTATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.46
Consensus pattern (18 bp):
TAATTCGGTTAATTTGAT
Found at i:83743170 original size:4 final size:4
Alignment explanation
Indices: 83743163--83743207 Score: 90
Period size: 4 Copynumber: 11.2 Consensus size: 4
83743153 TCGTTCCTAT
83743163 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA C
83743208 TATGTTTTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:83747227 original size:95 final size:92
Alignment explanation
Indices: 83747029--83747294 Score: 232
Period size: 95 Copynumber: 2.8 Consensus size: 92
83747019 ATTGACGGTT
* * * *
83747029 AAGGATACCATGTAAGACCATATCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGACCA
1 AAGGATACCATGTAAGACCACATCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGACCA
* *
83747094 TGTCAAGACATGGCATCGGCATTGATT
66 TGTCAAGACATGGCATCGGCATAGATC
** * *
83747121 AAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCACTATGATAAGGATACCATGTAAG
1 AAGGA-TACCATGTAAGACCACATCAAGACATGGCATTGG---TAAGACAAGGATACCATGTAAG
** * *
83747185 ACCATGTTTAGAACATGGCATTTGGTA-AGA-C
62 ACCATGTCAAG-ACATGGCA-TCGGCATAGATC
** *** * *
83747216 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATGTAAGAC
1 AAGGATACCATGTAAGACCACATCAAG-ACATGGCA-TTGGTAAGACAAGGATACCATGTAAGAC
* *
83747281 CATGCCAAGGCATG
64 CATGTCAAGACATG
83747295 ACATTGATAA
Statistics
Matches: 138, Mismatches: 27, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
92 34 0.25
93 5 0.04
94 29 0.21
95 46 0.33
96 16 0.12
97 8 0.06
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (92 bp):
AAGGATACCATGTAAGACCACATCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATCGGCATAGATC
Found at i:83747228 original size:47 final size:47
Alignment explanation
Indices: 83747169--83747284 Score: 205
Period size: 47 Copynumber: 2.5 Consensus size: 47
83747159 GCACTATGAT
83747169 AAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGGTAAGAC
* *
83747216 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGGTAAGAC
*
83747263 AAGGATATCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
83747285 CCAAGGCATG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGGTAAGAC
Found at i:83747390 original size:55 final size:54
Alignment explanation
Indices: 83747263--83747579 Score: 336
Period size: 55 Copynumber: 5.8 Consensus size: 54
83747253 TTGGTAAGAT
* * *
83747263 AAGGATATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGC-
1 AAGG-TATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCA
* * * * *
83747317 AGGGAAATCATGAAAGACCATGTCAAGAAATGGCATTGATGAGTTACTATAAGGCA
1 AAGG-TATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGCA
** *
83747373 AAGGTCCCATGTAAGACCATG-CTAAGGCATGGCATTGATAAGTTCTATAAGGC-
1 AAGGTATCATGTAAGACCATGTC-AAGACATGGCATTGATAAGTTCTATAAGGCA
*
83747426 AAGGAAATCATGTAAGACCCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGG-TATCATGTAAGA-CCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGCA
* * * * *
83747483 AAGGTCTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCA
1 AAGGTATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCA
* * * * * *
83747536 ATGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGTATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT
83747580 TAAAAAGGAC
Statistics
Matches: 220, Mismatches: 35, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
53 47 0.21
54 57 0.26
55 89 0.40
56 23 0.10
57 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGTATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCA
Found at i:83747532 original size:109 final size:109
Alignment explanation
Indices: 83747270--83747579 Score: 469
Period size: 109 Copynumber: 2.8 Consensus size: 109
83747260 GATAAGGATA
* * *
83747270 TCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAGGGAAATCATGAAAGAC
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGAC
* *
83747335 CATGTCAAGAAATGGCATTGATGAGTTACTATAAGGCAAAGGTC
66 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
* *
83747379 CCATGTAAGACCATGCTAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGAC
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGA-
83747444 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
65 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
* * * * * *
83747489 TCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAATGATACCACGTAAGAC
1 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGAC
* *
83747553 CATGTCAAGACATGGCAATGGTAAGTT
66 CATGTCAAGACATGGCATTGATAAGTT
83747580 TAAAAAGGAC
Statistics
Matches: 183, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
108 26 0.14
109 79 0.43
110 78 0.43
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (109 bp):
TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGAC
CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
Found at i:83751777 original size:46 final size:45
Alignment explanation
Indices: 83751710--83751884 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
83751700 TGTAACCCGC
*
83751710 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCAT
* * * *
83751756 CCATAAGTGAACTCGGTCTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGCAT
* *** * * *
83751802 ACATCTCTCGAACTCGAACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCAT
83751849 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
83751885 ATGCCCAAAC
Statistics
Matches: 102, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 67 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGCAT
Found at i:83751830 original size:93 final size:93
Alignment explanation
Indices: 83751718--83751889 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
83751708 GCCCATAAGT
* * * * *
83751718 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGTCTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83751783 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
83751811 GAACTCGAACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83751876 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
83751890 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:83751904 original size:46 final size:46
Alignment explanation
Indices: 83751715--83751904 Score: 133
Period size: 46 Copynumber: 4.1 Consensus size: 46
83751705 CCCGCCCATA
* ** *
83751715 AGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAT-ACATCC-T
* *
83751760 AAGTGAACTCGGTCTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * * * *
83751810 --CGAACTCGAACTCAACTCAACGAGTTCAGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCCCATACATCCT
*
83751854 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
83751900 AGTGA
1 AGTGA
83751905 CATGTCACTT
Statistics
Matches: 110, Mismatches: 22, Indels: 24
0.71 0.14 0.15
Matches are distributed among these distances:
44 8 0.07
45 1 0.01
46 59 0.54
47 28 0.25
48 2 0.02
49 5 0.05
50 5 0.05
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:83754291 original size:15 final size:15
Alignment explanation
Indices: 83754262--83754311 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
83754252 CAAAGATAAC
*
83754262 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
83754276 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
83754291 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
83754306 AAGAAA
1 AAGAAA
83754312 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:83754320 original size:15 final size:15
Alignment explanation
Indices: 83754273--83754320 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
83754263 AGAAAACCGA
83754273 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
83754287 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
83754303 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
83754318 ATA
1 ATA
83754321 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:83757350 original size:94 final size:93
Alignment explanation
Indices: 83757236--83757408 Score: 310
Period size: 94 Copynumber: 1.8 Consensus size: 93
83757226 GCCCATAAGT
* *
83757236 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTC-GGACTCAACTCA
83757301 ACGAGTTCGGATGCCTAGTTACATCTCTC
65 ACGAGTTCGGATGCCTAGTTACATCTCTC
*
83757330 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83757395 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
83757409 CAAACATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
93 27 0.36
94 49 0.64
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:83757397 original size:46 final size:46
Alignment explanation
Indices: 83757228--83757404 Score: 216
Period size: 47 Copynumber: 3.8 Consensus size: 46
83757218 TGTAACCCGC
* * *
83757228 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
83757274 CCATAAGTGAACTCAGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTC-GGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
83757321 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
83757368 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83757405 TGCCCAAACA
Statistics
Matches: 111, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
44 1 0.01
45 3 0.03
46 43 0.39
47 53 0.48
48 6 0.05
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83767573 original size:3 final size:3
Alignment explanation
Indices: 83767565--83767606 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
83767555 ATACCATCTA
83767565 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
83767607 AACAATCTCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:83788104 original size:134 final size:131
Alignment explanation
Indices: 83787946--83788197 Score: 353
Period size: 134 Copynumber: 1.9 Consensus size: 131
83787936 TAATTTTGAT
* *
83787946 TTTTGTCATATGAATTTGATACTCAAATTTAAATAAATTAAAATGAACTGTCTTT-GTCATTCTA
1 TTTTGTCATATGAATTCGATACTCAAATTTAAATAAATTAAAATGAACTGT-TTTCATCATTCTA
* * *
83788010 AGTTTGTGATACATTTTTTTTTAATGTTAGTTTTGGATTGAATCATTTTTTTTCTCTCGATTATA
65 AGTTTGTGATACA--TTTTTTT-ATGTCAGTTTCGAATTGAATCATTTTTTTTCTCTCGATTATA
83788075 TCGAG
127 TCGAG
* * * * *
83788080 TTTTGTCATATGAATTCGATACTCAAATTTGAATCATTTTAAATTAACTGTTTTCATCATTCTAA
1 TTTTGTCATATGAATTCGATACTCAAATTTAAATAAATTAAAATGAACTGTTTTCATCATTCTAA
* *
83788145 GTTTGTGATACATTTTTTTATGTCGGTTTCGAATTGAGTCATTTTTTTTCTCT
66 GTTTGTGATACATTTTTTTATGTCAGTTTCGAATTGAATCATTTTTTTTCTCT
83788198 AAATAATATA
Statistics
Matches: 105, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
131 29 0.28
132 7 0.07
133 3 0.03
134 66 0.63
ACGTcount: A:0.27, C:0.11, G:0.12, T:0.50
Consensus pattern (131 bp):
TTTTGTCATATGAATTCGATACTCAAATTTAAATAAATTAAAATGAACTGTTTTCATCATTCTAA
GTTTGTGATACATTTTTTTATGTCAGTTTCGAATTGAATCATTTTTTTTCTCTCGATTATATCGA
G
Found at i:83788404 original size:215 final size:220
Alignment explanation
Indices: 83787994--83788411 Score: 569
Period size: 215 Copynumber: 1.9 Consensus size: 220
83787984 TAAAATGAAC
* * ** *
83787994 TGTCTTTGTCATTCTAAGTTTGTGATACATTTTTTTTTAATGTTAGTTTTGGATTGAATCATTTT
1 TGTCTTCGTCATTCTAAGTTTGGGATACA-TTTTTTTT-ATGCCAGTTTCGGATTGAATCA-TTT
* * *
83788059 TTTTCTCTCGATTATATCGAGTTTTGTCATATGAATTCGATACTCAAATTTGAATCATTTTAAAT
63 TTTTCTCTCGATAATATCGAATTTTGTCATATGAATTCGATACTCAAATTTGAATCATTTGAAAT
* * ** *
83788124 TAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCGGTTTCGAATTGAGTCATTT
128 TAACTGTTTTCATCATTCTAAGTTTGGGATACATTTTTTAATGTCAATTTCGAATTGAATCATTT
83788189 TTTTTCTCTAAATAATATAATGTTTTGT
193 TTTTTCTCTAAATAATATAATGTTTTGT
83788217 TGTCTTCGTCATTCTAAGTTTGGGATACA-TTTTTTT-TGCCAGTTTCGGATTGAATCA-TTTTT
1 TGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTTTATGCCAGTTTCGGATTGAATCATTTTTT
* * * *
83788279 TC-CT-GATAATATCGAATTTTTTCATATGAGTTTGATACTCAAATTTGAATTATTTGAAATTAA
66 TCTCTCGATAATATCGAATTTTGTCATATGAATTCGATACTCAAATTTGAATCATTTGAAATTAA
** * *
83788342 CTGTTTTTGTCCTTCTAAGTTTGGGATACATTTTTTAATGTCAA-TTCTGGATTGAATCATTTTT
131 CTGTTTTCATCATTCTAAGTTTGGGATACATTTTTTAATGTCAATTTC-GAATTGAATCATTTTT
83788406 TTTCTC
195 TTTCTC
83788412 GTTAATATAA
Statistics
Matches: 173, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
214 3 0.02
215 109 0.63
216 2 0.01
217 7 0.04
219 18 0.10
221 7 0.04
223 27 0.16
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.51
Consensus pattern (220 bp):
TGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTTTATGCCAGTTTCGGATTGAATCATTTTTT
TCTCTCGATAATATCGAATTTTGTCATATGAATTCGATACTCAAATTTGAATCATTTGAAATTAA
CTGTTTTCATCATTCTAAGTTTGGGATACATTTTTTAATGTCAATTTCGAATTGAATCATTTTTT
TTCTCTAAATAATATAATGTTTTGT
Found at i:83788455 original size:129 final size:128
Alignment explanation
Indices: 83788216--83789111 Score: 886
Period size: 129 Copynumber: 6.9 Consensus size: 128
83788206 TAATGTTTTG
* * *
83788216 TTGTCTTCGTCATTCTAAGTTTGGGATACATTTTTTT-TGCCAGTTTCGGATTGAATCATTTTTT
1 TTGTTTTCGTCATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTCGGATTGAATCATTTTTT
* * * * * * *
83788280 CCT-GATAATATCGAATTTTTTCATATGAGTTTGATACTCAAATTTGAATTATTTGAAATTAA
66 TCTCGATAATATTGAGTTTTGTCATATGAGTTTGATATTCGAATTTGAATAATTTGAAATTAA
* * * * **
83788342 CTGTTTTTGTCCTTCTAAGTTTGGGATACATTTTTTAATGTC-AATTCTGGATTGAATCATTTTT
1 TTGTTTTCGTCATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTC-GGATTGAATCA-TTTT
* ** *
83788406 TTTCTCGTTAATATAAAGTTTTGTCATACGAGTTTGATATTCGAATTTGAATAATTTGAAATTAA
64 TTTCTCGATAATATTGAGTTTTGTCATATGAGTTTGATATTCGAATTTGAATAATTTGAAATTAA
* * * * * *
83788471 TTCTCTTTCATCATTCTAAGTTTGGAATACATTTTTTTATGTTGGTTTC-AAGTT-AATAATTTT
1 TTGT-TTTCGTCATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTCGGA-TTGAATCATTTT
* * * * * *
83788534 TTCCTCGATAATATTGAGTTTTGTCATATGAGTTTGATACTCAAATCTAAATCATTTGAAATTTG
64 TTTCTCGATAATATTGAGTTTTGTCATATGAGTTTGATATTCGAATTTGAATAATTTGAAA-TT-
83788599 AAA
127 -AA
* * * * **
83788602 TTATTTGTCTTCATTATTCTAAATTTGGGATACATTTTTTTATATCGGTTTCAAATTGAATCATT
1 TTGTTT-TCGTC---ATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTCGGATTGAATCATT
* *
83788667 TTTTTCTCTTGATAATATCGAGTTTTGTCAAATGAGTTTGATACTT-GAATTTGAATAAATTTGA
62 TTTTTCTC--GATAATATTGAGTTTTGTCATATGAGTTTGATA-TTCGAATTTGAAT-AATTTGA
83788731 AATTAGA
123 AATTA-A
* * *
83788738 -TGTCTTCGTCATTCTAAGTTTGGAATACATTTTTTTTATGTCGGTTTCGGGTTGAATCA-TTTT
1 TTGTTTTCGTCATTCTAAGTTTGGGATACA-TTTTTTTATGTCGGTTTCGGATTGAATCATTTTT
* * ** *
83788801 TCCTCTATAATATTGAGTTTTGTTGTATGAGTTTGATACTCGAATTTGAATAATTTGAAATTAA
65 TTCTCGATAATATTGAGTTTTGTCATATGAGTTTGATATTCGAATTTGAATAATTTGAAATTAA
* * ** *
83788865 TTGTCTTT-GTGATTCTAAGTTT-GGATTACATTTTTTGATGTCACTTTCGGATTAAATCA-TTT
1 TTGT-TTTCGTCATTCTAAGTTTGGGA-TACATTTTTTTATGTCGGTTTCGGATTGAATCATTTT
* * * ** * * *
83788927 TTTCTTGACAATATCT-AGTTTTGTTATACAAGTTTGATATTTGAATATAAAT-ATTTGAAATTA
64 TTTCTCGATAATAT-TGAGTTTTGTCATATGAGTTTGATATTCGAATTTGAATAATTTGAAATTA
83788990 A
128 A
* * *
83788991 TTGTTTTCGCCGTTCTAAGTTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAATTATTATT
1 TTGTTTTCGTCATTCTAAGTTTGGGATACA-TTTTTTTATGTCGGTTTCGGATTGAATCATT-TT
*
83789056 ATTT-TTGATAATATTGAGTTTTGTCATATGAGTTTGATAATT-GAATTTGAATAATT
64 -TTTCTCGATAATATTGAGTTTTGTCATATGAGTTTGAT-ATTCGAATTTGAATAATT
83789112 GTCTTTGTAA
Statistics
Matches: 630, Mismatches: 104, Indels: 68
0.79 0.13 0.08
Matches are distributed among these distances:
125 3 0.00
126 66 0.10
127 110 0.17
128 99 0.16
129 137 0.22
130 45 0.07
131 37 0.06
132 25 0.04
134 39 0.06
135 19 0.03
136 1 0.00
137 40 0.06
138 9 0.01
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.49
Consensus pattern (128 bp):
TTGTTTTCGTCATTCTAAGTTTGGGATACATTTTTTTATGTCGGTTTCGGATTGAATCATTTTTT
TCTCGATAATATTGAGTTTTGTCATATGAGTTTGATATTCGAATTTGAATAATTTGAAATTAA
Found at i:83788575 original size:472 final size:474
Alignment explanation
Indices: 83787783--83788684 Score: 1042
Period size: 472 Copynumber: 1.9 Consensus size: 474
83787773 AACATTATGT
* * *
83787783 CAGTTTCGGATTCATTCAAATTTTTCTCGATAATATCGAGTTTTATCATATGAGTTTAATATTCA
1 CAGTTTCGGATTCAATCAAATTTTTCTCGATAATATCGAATTTTATCATATGAGTTTAATACTCA
* * * * ** * *
83787848 AATTTGAATTATTTGAAATTAATTGTTTTCGTCGTTTTGAGTTTGAGTTTTTTTTTTGGTTAGTT
66 AATTTGAATTATTTGAAATTAACTGTTTTCGTCCTTCTAAGTTTGAGTTTTTTTAATGGTCAATT
* ** * *
83787913 TCAGATTGAATCATTTTTCTCGATAATTTTGATTTTTGTCATATGAATTTGATACTCAAATTTAA
131 TCAGATTGAATCATTTTTCTCGATAATATAAAGTTTTGTCATACGAATTTGATACTCAAATTTAA
* *
83787978 ATAAATTAAAATGAACTGTCTTTGTCATTCTAAGTTTGTGATACATTTTTTTTTAATGTTAGTTT
196 ATAAATTAAAATGAACTCTCTTTATCATTCTAAGTTTGTGATACA-TTTTTTTTAATGTTAGTTT
** * *
83788043 TGGATTGAATCATTTTTTTTCTCTCGATTATATCGAGTTTTGTCATATGAATTCGATACTCAAAT
260 AAGATTGAATCATATTTTTTCTCTCGATAATATCGAGTTTTGTCATATGAATTCGATACTCAAAT
* * * * * *
83788108 TTGAATCA-T-TTT-AAATTAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCG
325 CTAAATCATTATTTGAAATTAACTGTCTTCATCATTCTAAATTTGGGATACATTTTTTTATATCG
* *
83788170 GTTTCGAATTGAGTCATTTTTTTTCTCTAAATAATATAATGTTTTGTTGTCTTCGTCATTCTAAG
390 GTTTCAAATTGAATCA-TTTTTTTCTCTAAATAATATAATGTTTTGTTGTCTTCGTCATTCTAAG
83788235 TTTGGGATACATTTTTTTTGC
454 TTTGGGATACATTTTTTTTGC
* * * *
83788256 CAGTTTCGGATTGAATC-ATTTTTTC-CTGATAATATCGAATTTTTTCATATGAGTTTGATACTC
1 CAGTTTCGGATTCAATCAAATTTTTCTC-GATAATATCGAATTTTATCATATGAGTTTAATACTC
* *
83788319 AAATTTGAATTATTTGAAATTAACTGTTTTTGTCCTTCTAAGTTTGGGATACATTTTTTAAT-GT
65 AAATTTGAATTATTTGAAATTAACTGTTTTCGTCCTTCTAAGTTTGAG-T---TTTTTTAATGGT
* * * *
83788383 CAA-TTCTGGATTGAATCATTTTTTTTCTCGTTAATATAAAGTTTTGTCATACGAGTTTGATATT
126 CAATTTC-AGATTGAATCA---TTTTTCTCGATAATATAAAGTTTTGTCATACGAATTTGATACT
* * * * * *
83788447 CGAATTTGAATAATTTGAAATTAATTCTCTTTCATCATTCTAAGTTTG-GAATACA-TTTTTTT-
187 CAAATTTAAATAAATTAAAATGAACTCTCTTT-ATCATTCTAAGTTTGTG-ATACATTTTTTTTA
* * * *
83788509 ATGTTGGTTTCAAG-TT-AAT-A-ATTTTTTC-CTCGATAATATTGAGTTTTGTCATATGAGTTT
250 ATGTTAGTTT-AAGATTGAATCATATTTTTTCTCTCGATAATATCGAGTTTTGTCATATGAATTC
** *
83788569 GATACTCAAATCTAAATCATTTGAAATTTGAAATTATTTGTCTTCATTATTCTAAATTTGGGATA
314 GATACTCAAATCTAAATCA-TT---ATTTGAAATTAACTGTCTTCATCATTCTAAATTTGGGATA
**
83788634 CATTTTTTTATATCGGTTTCAAATTGAATCATTTTTTTCTCTTGATAATAT
375 CATTTTTTTATATCGGTTTCAAATTGAATCATTTTTTTCTCTAAATAATAT
83788685 CGAGTTTTGT
Statistics
Matches: 355, Mismatches: 55, Indels: 33
0.80 0.12 0.07
Matches are distributed among these distances:
471 1 0.00
472 126 0.35
473 23 0.06
474 5 0.01
475 16 0.05
476 18 0.05
477 8 0.02
478 82 0.23
479 76 0.21
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (474 bp):
CAGTTTCGGATTCAATCAAATTTTTCTCGATAATATCGAATTTTATCATATGAGTTTAATACTCA
AATTTGAATTATTTGAAATTAACTGTTTTCGTCCTTCTAAGTTTGAGTTTTTTTAATGGTCAATT
TCAGATTGAATCATTTTTCTCGATAATATAAAGTTTTGTCATACGAATTTGATACTCAAATTTAA
ATAAATTAAAATGAACTCTCTTTATCATTCTAAGTTTGTGATACATTTTTTTTAATGTTAGTTTA
AGATTGAATCATATTTTTTCTCTCGATAATATCGAGTTTTGTCATATGAATTCGATACTCAAATC
TAAATCATTATTTGAAATTAACTGTCTTCATCATTCTAAATTTGGGATACATTTTTTTATATCGG
TTTCAAATTGAATCATTTTTTTCTCTAAATAATATAATGTTTTGTTGTCTTCGTCATTCTAAGTT
TGGGATACATTTTTTTTGC
Found at i:83790675 original size:132 final size:132
Alignment explanation
Indices: 83790518--83790784 Score: 507
Period size: 132 Copynumber: 2.0 Consensus size: 132
83790508 TATGCCTAAT
* *
83790518 TTAATTGATGTAATGCGAATATTTTTTTACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
1 TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
83790583 ATTTTAGCATTTAAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
66 ATTTTAGCATTTAAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
83790648 AA
131 AA
83790650 TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
1 TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
*
83790715 ATTTTAGCATTTGAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
66 ATTTTAGCATTTAAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
83790780 AA
131 AA
83790782 TTA
1 TTA
83790785 TCACTTTTAC
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 132 1.00
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (132 bp):
TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
ATTTTAGCATTTAAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
AA
Found at i:83790966 original size:32 final size:32
Alignment explanation
Indices: 83790930--83790993 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
83790920 GGACAATAAT
**
83790930 AAAGGGACCAATGTGAGAATTTCACTATAGTA
1 AAAGGGACCAAACTGAGAATTTCACTATAGTA
** *
83790962 AAAGGGGTCAAACTGAGAATTTCGCTATAGTA
1 AAAGGGACCAAACTGAGAATTTCACTATAGTA
83790994 GAGTGGCTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.25
Consensus pattern (32 bp):
AAAGGGACCAAACTGAGAATTTCACTATAGTA
Found at i:83791955 original size:199 final size:198
Alignment explanation
Indices: 83791605--83792989 Score: 1504
Period size: 199 Copynumber: 6.9 Consensus size: 198
83791595 AAAAAAAAAG
* * ***
83791605 AAGCTCCTTGTAGTAGTTAAGCTAGACAAGGCTTTGATTGCGGGAAAAGCAAATGCTTGTACC-A
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGT-CCAA
* *** * * * *
83791669 CACATATTTGTATCTGACATTTATGCTTGAGTCCGAGTAATATAAGCTAAAGTCAAGCTTTAGCC
65 TACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTAAA-TCGAGCTTTAGCC
* * * *
83791734 ATCGGCTAATGGTAGCCCCAGAATCTTATCCAGTTGGTTTGAGGTGTGAAGAGGCTCCAAATGCC
129 ATCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCC
*
83791799 TTACA
194 TTAAA
* * *
83791804 AAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGCTTGTCCAAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCAAT
* * * *
83791869 ACATATTCATATCTGATACTCATGCTTGAGTCCGAGTAATATAAGCTAAAGTCAAGCTTTAGCCA
66 ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTAAA-TCGAGCTTTAGCCA
* * *
83791934 TCGGCTAATGGTAGCCCCAGAATCTTATGC-AGTTGGTTTGAGGTGTGAAGAGGCTCCAAATGCC
130 TCGGCTAATGGTAGCCCCAGAATCTTAT-CTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCC
*
83791998 TTACA
194 TTAAA
* * * *
83792003 AAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGTTTGTCCAAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCAAT
* * * *
83792068 ACATATTCATATCTGATACTCATGCTTGAGTCCGAGTAACATAAGCTTAAAGCGAGCTTTAGCCG
66 ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGC-TAAATCGAGCTTTAGCCA
* * * * * *
83792133 TTGCCTAATGGTAACCCCAGAGTCTTATCTAGGTGATTTAAGGTGTGAAGAGGATCCAATTGCCT
130 TCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCCT
83792198 TAAA
195 TAAA
* * * * **
83792202 AAGTTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTCCAGGATTTGCAAATGCTTGTCTGGA
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTC-CAA
* * * * * *
83792267 -ACATATCCGTATTTGACACTCACATGCTTGAGTTCAAATAACATAAGCTCAAATTGAGCTTTAG
65 TACATATCCATATCTGACACT--CATGCTTGAGTCCGAGTAACATAAGCT-AAATCGAGCTTTAG
* *
83792331 CCATTGGCTAATGGTAACCCCAGAATC---T-TA-----TTTAA-GTGTGAAGAGGCTCCAATTG
127 CCATCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
*
83792386 CCTTTAA
192 CCTTAAA
* ** * *
83792393 AAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGGGGGATTTGTAAATGCTTGCCGGAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTT----G-T
* * * *
83792458 AGGACCAATACATATCCATGTCTGACAGTCATGTTTGAGTCAGAGTAACATAAGCTTAAATCGAG
61 ----CCAATACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGC-TAAATCGAG
* * * * *
83792523 CTTTAGCCATTGCCTAATGGTAACCCAAGAATCTTATCTGGGTGGTTTAAGGTGTGAAGAGGCTC
121 CTTTAGCCATCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTC
83792588 CAATTGCCTTAAA
186 CAATTGCCTTAAA
** * * * **
83792601 AAGCTCCTTTTAGTAGTTAAGCTGGACAAGGCTTTGATTCCGGGATTTGCCAATTCTTGTCCTGT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCAAT
* * * * *
83792666 ACATATCCATATTTTGACACTCATGCTTGATTCTGAGTAACATAAGCTCAAATCAAGCTTTAGTC
66 ACATATCCATA-TCTGACACTCATGCTTGAGTCCGAGTAACATAAGCT-AAATCGAGCTTTAGCC
* ** * * *
83792731 AT-TGCTTACCGGTAGCCTCAAAATCTTATTATAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
129 ATCGGC-TAATGGTAGCCCCAGAATCTTA-TCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
*
83792795 CTTTAAA
192 CCTTAAA
* * ** ** *
83792802 AACCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTTGATTATGGGATTCACAAATGCTTGTCCGAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCAAT
* *
83792867 ACATATCCGTATCTGACACTCATGTTTGAG-CCTGAGTAACATAAGCTCAAATCGAGCTTTAGCC
66 ACATATCCATATCTGACACTCATGCTTGAGTCC-GAGTAACATAAGCT-AAATCGAGCTTTAGCC
* **
83792931 ATCAGCTAACAGTAGCCCCAGAATCTTATCATAGGTGGTTTAAGGTGTGAAGAGGCTCC
129 ATCGGCTAATGGTAGCCCCAGAATCTTATC-TAGGTGGTTTAAGGTGTGAAGAGGCTCC
83792990 TATTTTTACC
Statistics
Matches: 1018, Mismatches: 132, Indels: 71
0.83 0.11 0.06
Matches are distributed among these distances:
191 74 0.07
192 5 0.00
195 1 0.00
196 1 0.00
197 2 0.00
198 63 0.06
199 447 0.44
200 179 0.18
201 164 0.16
202 1 0.00
203 1 0.00
204 1 0.00
207 5 0.00
208 74 0.07
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (198 bp):
AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCAAT
ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTAAATCGAGCTTTAGCCAT
CGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCCTT
AAA
Found at i:83792909 original size:598 final size:587
Alignment explanation
Indices: 83791608--83792959 Score: 1545
Period size: 598 Copynumber: 2.3 Consensus size: 587
83791598 AAAAAAGAAG
* * *
83791608 CTCCTTGTAGTAGTTAAGCTAGACAAGGCTTTGATTGCGGGA-AAAGCAAATGCTTGTACC-ACA
1 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACGGGATTAA-CAAATGCTTGT-CCGA-A
** * * * *
83791671 CATATTTGTATCTGACATTTATGCTTGAGTCC-GAGTAATATAAGCT-AAAGTCAAGCTTTAGCC
63 CATATCCGTATCTGACACTCATGCTTGAG-CCTGAGTAACATAAGCTCAAA-TCGAGCTTTAGCC
*
83791734 ATCGGCTAATGGTAGCCCCAGAATCTTATCCAGTTGGTTTGAGGTGTGAAGAGGCTCCAAATGCC
126 ATCGGCTAATGGTAGCCCCAGAATC-T-T--A-----TTTGAAGTGTGAAGAGGCTCCAAATGCC
* * **
83791799 TTACAAAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGCTTGT
182 TTACAAAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGCAGGATTTGCAAATGCTTGT
* * * *
83791864 CCAATACATATTCATATCTGATACTCATGCTTGAGTCCGAGTAATATAAGCTAAAGTCAAGCTTT
247 CCAATACATATCCATATCTGACACTCATGCTTGAGTCAGAGTAACATAAGCTAAAGTCAAGCTTT
* * * * *
83791929 AGCCATCGGCTAATGGTAGCCCCAGAATCTTATGCAGTTGGTTTGAGGTGTGAAGAGGCTCCAAA
312 AGCCATCGCCTAATGGTAACCCAAGAATCTTATGCAGGTGGTTTAAGGTGTGAAGAGGCTCCAAA
* * *
83791994 TGCCTTACAAAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGT
377 TGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTCCAGGATTTGCAAATGT
* * * *
83792059 TTGTCCAATACATATTCATATCTGATACTCATGCTTGAGTCCGAGTAACATAAGCTTAAAGCGAG
442 TTGTCCAATACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAAGCAAG
* * * * *
83792124 CTTTAGCCGTTGCCTAATGGTAACCCCAGAGTCTTATCTAGGTGATTTAAGGTGTGAAGAGGATC
507 CTTTAGCCATTGCCTAACGGTAACCCCAAAATCTTATATAGGTGATTTAAGGTGTGAAGAGGATC
*
83792189 CAATTGCCTTAAAAAG
572 CAATTGCCTTAAAAAC
* * * ** *
83792205 TTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTCCAGGATTTGCAAATGCTTGTCTGGAACA
1 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACGGGATTAACAAATGCTTGTC-CGAACA
* * * * *
83792270 TATCCGTATTTGACACTCACATGCTTGAG-TTCAAATAACATAAGCTCAAATTGAGCTTTAGCCA
65 TATCCGTATCTGACACT--CATGCTTGAGCCT-GAGTAACATAAGCTCAAATCGAGCTTTAGCCA
* * *
83792334 TTGGCTAATGGTAACCCCAGAATCTTATTT-AAGTGTGAAGAGGCTCCAATTGCCTTTA-AAAGC
127 TCGGCTAATGGTAGCCCCAGAATCTTATTTGAAGTGTGAAGAGGCTCCAAATGCC-TTACAAAGC
** *
83792397 TCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGGGGGATTTGTAAATGCTTGCCGGATAGGA
191 TCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGCAGGATTTGCAAATGCTT----G-T----
* * * *
83792462 CCAATACATATCCATGTCTGACAGTCATGTTTGAGTCAGAGTAACATAAGCTTAAA-TCGAGCTT
247 CCAATACATATCCATATCTGACACTCATGCTTGAGTCAGAGTAACATAAGC-TAAAGTCAAGCTT
* *
83792526 TAGCCATTGCCTAATGGTAACCCAAGAATCTTAT-CTGGGTGGTTTAAGGTGTGAAGAGGCTCCA
311 TAGCCATCGCCTAATGGTAACCCAAGAATCTTATGC-AGGTGGTTTAAGGTGTGAAGAGGCTCCA
* ** * * *
83792590 ATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCTGGACAAGGCTTTGATTCCGGGATTTGCCAAT
375 AATGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTCCAGGATTTGCAAAT
** * * * *
83792655 -TCTTGTCCTGTACATATCCATATTTTGACACTCATGCTTGATTCTGAGTAACATAAGCTCAAAT
440 GT-TTGTCCAATACATATCCATA-TCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAAG
* * * * * *
83792719 CAAGCTTTAGTCATTGCTTACCGGTAGCCTCAAAATCTTATTATAGGTGGTTTAAGGTGTGAAGA
503 CAAGCTTTAGCCATTGCCTAACGGTAACCCCAAAATCTTA-TATAGGTGATTTAAGGTGTGAAGA
* *
83792784 GGCTCCAATTGCTTTAAAAAC
567 GGATCCAATTGCCTTAAAAAC
* * * *
83792805 CTCCTTTTAGTAGTTAAGCCAAACAAGGCTTTGATTATGGGATTCACAAATGCTTGTCCGATACA
1 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACGGGATTAACAAATGCTTGTCCGA-ACA
* *
83792870 TATCCGTATCTGACACTCATGTTTGAGCCTGAGTAACATAAGCTCAAATCGAGCTTTAGCCATCA
65 TATCCGTATCTGACACTCATGCTTGAGCCTGAGTAACATAAGCTCAAATCGAGCTTTAGCCATCG
**
83792935 GCTAACAGTAGCCCCAGAATCTTAT
130 GCTAATGGTAGCCCCAGAATCTTAT
83792960 CATAGGTGGT
Statistics
Matches: 632, Mismatches: 98, Indels: 49
0.81 0.13 0.06
Matches are distributed among these distances:
589 74 0.12
590 6 0.01
593 1 0.00
594 1 0.00
595 1 0.00
596 1 0.00
597 68 0.11
598 242 0.38
599 126 0.20
600 112 0.18
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (587 bp):
CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACGGGATTAACAAATGCTTGTCCGAACAT
ATCCGTATCTGACACTCATGCTTGAGCCTGAGTAACATAAGCTCAAATCGAGCTTTAGCCATCGG
CTAATGGTAGCCCCAGAATCTTATTTGAAGTGTGAAGAGGCTCCAAATGCCTTACAAAGCTCCTT
TTAGTAGTTAAGCCAAACAAGGCTTCAATTGCAGGATTTGCAAATGCTTGTCCAATACATATCCA
TATCTGACACTCATGCTTGAGTCAGAGTAACATAAGCTAAAGTCAAGCTTTAGCCATCGCCTAAT
GGTAACCCAAGAATCTTATGCAGGTGGTTTAAGGTGTGAAGAGGCTCCAAATGCCTTAAAAAGCT
CCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTCCAGGATTTGCAAATGTTTGTCCAATACATA
TCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAAGCAAGCTTTAGCCATTGCC
TAACGGTAACCCCAAAATCTTATATAGGTGATTTAAGGTGTGAAGAGGATCCAATTGCCTTAAAA
AC
Found at i:83795273 original size:16 final size:16
Alignment explanation
Indices: 83795252--83795283 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
83795242 TTTACTTCTC
83795252 TTTTATCTATCAGCTA
1 TTTTATCTATCAGCTA
83795268 TTTTATCTATCAGCTA
1 TTTTATCTATCAGCTA
83795284 AGTTGTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (16 bp):
TTTTATCTATCAGCTA
Found at i:83800579 original size:40 final size:40
Alignment explanation
Indices: 83800534--83800613 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
83800524 GAAGAGAAGA
* * *
83800534 AAATGAGAGCTTTAAATTGGTGTAAGTGGTATGAACAAAG
1 AAATGAGAACTTTAAATTAGTATAAGTGGTATGAACAAAG
* *
83800574 AAATGAGAACTTTAAATTAGTATAAGTGGTGTGAATAAAG
1 AAATGAGAACTTTAAATTAGTATAAGTGGTATGAACAAAG
83800614 GATGAGATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.42, C:0.04, G:0.25, T:0.29
Consensus pattern (40 bp):
AAATGAGAACTTTAAATTAGTATAAGTGGTATGAACAAAG
Found at i:83802954 original size:25 final size:25
Alignment explanation
Indices: 83802920--83802970 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
83802910 AAATGTTGAT
83802920 TTCATAATGTTGAGATTTGATAATG
1 TTCATAATGTTGAGATTTGATAATG
83802945 TTCATAATGTTGAGATTTGATAATG
1 TTCATAATGTTGAGATTTGATAATG
83802970 T
1 T
83802971 GATCAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.45
Consensus pattern (25 bp):
TTCATAATGTTGAGATTTGATAATG
Found at i:83808022 original size:22 final size:20
Alignment explanation
Indices: 83807970--83808023 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
83807960 AATCATACTA
*
83807970 TATTGTTATT-TAATTATGTG
1 TATT-TTATTATAATTAGGTG
83807990 TATTTTA-TATAATGTAGGTG
1 TATTTTATTATAAT-TAGGTG
83808010 TATATTTATTATAA
1 TAT-TTTATTATAA
83808024 AATGTTAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 1 0.03
19 7 0.24
20 12 0.41
21 4 0.14
22 5 0.17
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (20 bp):
TATTTTATTATAATTAGGTG
Found at i:83820088 original size:15 final size:16
Alignment explanation
Indices: 83820068--83820101 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
83820058 TTCTTAGGGG
*
83820068 AAAAAGAAATGAAA-A
1 AAAAAGAAAAGAAAGA
83820083 AAAAAGAAAAGAAAGA
1 AAAAAGAAAAGAAAGA
83820099 AAA
1 AAA
83820102 GGAAGTGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAAGAAAAGAAAGA
Found at i:83824071 original size:3 final size:3
Alignment explanation
Indices: 83824063--83824093 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
83824053 CATTAGTCTT
83824063 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
83824094 ATATCCTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:83824948 original size:12 final size:12
Alignment explanation
Indices: 83824931--83824955 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83824921 CTTAGTTTTG
83824931 CGGAACGCCTTA
1 CGGAACGCCTTA
83824943 CGGAACGCCTTA
1 CGGAACGCCTTA
83824955 C
1 C
83824956 TCCTTACCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGAACGCCTTA
Found at i:83826704 original size:25 final size:27
Alignment explanation
Indices: 83826667--83826719 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
83826657 TCAAACATGC
83826667 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
83826693 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
83826719 A
1 A
83826720 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:83828233 original size:26 final size:26
Alignment explanation
Indices: 83828197--83828306 Score: 170
Period size: 26 Copynumber: 4.2 Consensus size: 26
83828187 CATGAAATTC
83828197 TTATCATGAAACATTTACCTAAACC-A
1 TTATCATGAAACATTTACCT-AACCTA
*
83828223 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
83828249 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
83828275 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCTA
83828301 TTATCA
1 TTATCA
83828307 ATTTGTACCA
Statistics
Matches: 80, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
25 4 0.05
26 74 0.93
27 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:83831975 original size:15 final size:15
Alignment explanation
Indices: 83831951--83832003 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
83831941 ATATATATAT
*
83831951 TATAATTTCAATCAA
1 TATAAATTCAATCAA
83831966 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* * *
83831981 AATGATTTCAATCAA
1 TATAAATTCAATCAA
83831996 TATAAATT
1 TATAAATT
83832004 TGATAAATTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:83832944 original size:13 final size:13
Alignment explanation
Indices: 83832910--83832958 Score: 57
Period size: 13 Copynumber: 3.7 Consensus size: 13
83832900 CCTGCTATTC
83832910 TGTTTCTTTTCTTCT
1 TGTTTC-TTTCTT-T
83832925 T-TTTC-TTCTTTT
1 TGTTTCTTTC-TTT
83832937 TGTTTCTTTCTTT
1 TGTTTCTTTCTTT
83832950 TGTTTCTTT
1 TGTTTCTTT
83832959 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 5 0.16
13 18 0.58
14 7 0.23
15 1 0.03
ACGTcount: A:0.00, C:0.16, G:0.06, T:0.78
Consensus pattern (13 bp):
TGTTTCTTTCTTT
Found at i:83832947 original size:23 final size:22
Alignment explanation
Indices: 83832917--83832959 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
83832907 TTCTGTTTCT
83832917 TTTCTTCTTTT-TCTTCTTTTTG
1 TTTCTTCTTTTGT-TTCTTTTTG
83832939 TTTCTTTCTTTTGTTTCTTTT
1 TTTC-TTCTTTTGTTTCTTTT
83832960 ATATATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 14 0.74
24 1 0.05
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.79
Consensus pattern (22 bp):
TTTCTTCTTTTGTTTCTTTTTG
Found at i:83833634 original size:13 final size:13
Alignment explanation
Indices: 83833616--83833647 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
83833606 CTCGATTAAC
83833616 TTAATAAATATTT
1 TTAATAAATATTT
83833629 TTAATAAATATTT
1 TTAATAAATATTT
83833642 TCTAAT
1 T-TAAT
83833648 CCATTTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
TTAATAAATATTT
Found at i:83837072 original size:12 final size:12
Alignment explanation
Indices: 83837057--83837086 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
83837047 TCGGTGTTCT
83837057 TGGTGGCAGCAG
1 TGGTGGCAGCAG
83837069 TGGTGGCAGCAG
1 TGGTGGCAGCAG
83837081 TGGTGG
1 TGGTGG
83837087 GTGTTACGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.13, G:0.53, T:0.20
Consensus pattern (12 bp):
TGGTGGCAGCAG
Found at i:83842930 original size:28 final size:28
Alignment explanation
Indices: 83842890--83842948 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
83842880 TCATGAACAC
83842890 TTCTTAATGTCAATTGACGGATTATAGA
1 TTCTTAATGTCAATTGACGGATTATAGA
83842918 TTCTTAATGTCAATTGACGGATTATAGA
1 TTCTTAATGTCAATTGACGGATTATAGA
83842946 TTC
1 TTC
83842949 ATACACTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.41
Consensus pattern (28 bp):
TTCTTAATGTCAATTGACGGATTATAGA
Found at i:83843412 original size:150 final size:150
Alignment explanation
Indices: 83843141--83843436 Score: 583
Period size: 150 Copynumber: 2.0 Consensus size: 150
83843131 ACTTGCTTGA
83843141 TGAGTATATGTGTTTAGGCAAATGGCCAATTTGCTTTGGATACATGTTGTTTGTATGTTTACTTT
1 TGAGTATATGTGTTTAGGCAAATGGCCAATTTGCTTTGGATACATGTTGTTTGTATGTTTACTTT
83843206 AAATGAACCTGAGTGGTAAGTTAAATTCCCGTTATGCGAACTTACTAAGCATTAAATGCTTACTT
66 AAATGAACCTGAGTGGTAAGTTAAATTCCCGTTATGCGAACTTACTAAGCATTAAATGCTTACTT
83843271 GGTTTTCTTTTCTCTGAACC
131 GGTTTTCTTTTCTCTGAACC
*
83843291 TGAGTATATGTGTTTAGGCAAATGGCCAATTTTCTTTGGATACATGTTGTTTGTATGTTTACTTT
1 TGAGTATATGTGTTTAGGCAAATGGCCAATTTGCTTTGGATACATGTTGTTTGTATGTTTACTTT
83843356 AAATGAACCTGAGTGGTAAGTTAAATTCCCGTTATGCGAACTTACTAAGCATTAAATGCTTACTT
66 AAATGAACCTGAGTGGTAAGTTAAATTCCCGTTATGCGAACTTACTAAGCATTAAATGCTTACTT
83843421 GGTTTTCTTTTCTCTG
131 GGTTTTCTTTTCTCTG
83843437 TTTTATAGTG
Statistics
Matches: 145, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 145 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (150 bp):
TGAGTATATGTGTTTAGGCAAATGGCCAATTTGCTTTGGATACATGTTGTTTGTATGTTTACTTT
AAATGAACCTGAGTGGTAAGTTAAATTCCCGTTATGCGAACTTACTAAGCATTAAATGCTTACTT
GGTTTTCTTTTCTCTGAACC
Found at i:83844074 original size:54 final size:54
Alignment explanation
Indices: 83843934--83844051 Score: 200
Period size: 54 Copynumber: 2.2 Consensus size: 54
83843924 GGCATGTGGC
**
83843934 TGGCCGTGTGACACAAGTCAGAGAGTTACACGGGTATGAACACGTGTTAGGATA
1 TGGCCGTGTGACACAAGTCAGAGAGCCACACGGGTATGAACACGTGTTAGGATA
**
83843988 TGGCCGTGTGACACAAGTCAGAGAGTTACACGGGTATGAACACGTGTTAGGATA
1 TGGCCGTGTGACACAAGTCAGAGAGCCACACGGGTATGAACACGTGTTAGGATA
83844042 TGGCCGTGTG
1 TGGCCGTGTG
83844052 CCTTACATCG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (54 bp):
TGGCCGTGTGACACAAGTCAGAGAGCCACACGGGTATGAACACGTGTTAGGATA
Found at i:83846737 original size:19 final size:19
Alignment explanation
Indices: 83846713--83846750 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
83846703 GATTTCTAAA
83846713 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
83846732 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
83846751 TGTTTGAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:83849634 original size:11 final size:11
Alignment explanation
Indices: 83849608--83849640 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
83849598 TATATATATT
*
83849608 TAAAAATTATA
1 TAAAAATAATA
83849619 T-AAAATAATA
1 TAAAAATAATA
83849629 TAAAAATAATA
1 TAAAAATAATA
83849640 T
1 T
83849641 GGGCGGGTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:83851342 original size:31 final size:32
Alignment explanation
Indices: 83851285--83851353 Score: 104
Period size: 31 Copynumber: 2.1 Consensus size: 32
83851275 GACCTTGCGA
83851285 AGAGGAATGAGATTTGCCTCAGAAAGAGAGAAAC
1 AGAGGAATGAGATTTG-C-CAGAAAGAGAGAAAC
*
83851319 AGAGGAATGAGATTTG-CAGAAAGAGAGAAAG
1 AGAGGAATGAGATTTGCCAGAAAGAGAGAAAC
83851350 AGAG
1 AGAG
83851354 AAAGAAGATG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 18 0.53
34 16 0.47
ACGTcount: A:0.46, C:0.07, G:0.33, T:0.13
Consensus pattern (32 bp):
AGAGGAATGAGATTTGCCAGAAAGAGAGAAAC
Found at i:83852490 original size:12 final size:12
Alignment explanation
Indices: 83852473--83852502 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
83852463 TCAGTGTTCT
83852473 TGGTGGCAGCAG
1 TGGTGGCAGCAG
83852485 TGGTGGCAGCAG
1 TGGTGGCAGCAG
83852497 TGGTGG
1 TGGTGG
83852503 GTGTCACGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.13, G:0.53, T:0.20
Consensus pattern (12 bp):
TGGTGGCAGCAG
Done.