Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 29 of 292
Found at i:7672828 original size:26 final size:26
Alignment explanation
Indices: 7672792--7672901 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
7672782 TGATACAAAT
7672792 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7672818 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
7672844 TAATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7672870 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7672896 TGATAA
1 TGATAA
7672902 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:7677538 original size:74 final size:75
Alignment explanation
Indices: 7677349--7677596 Score: 286
Period size: 74 Copynumber: 3.3 Consensus size: 75
7677339 AATACACATC
* * * * *
7677349 TGCGGCATTTTTGTTGAAAACGCCAGTAAAAACAACGATAAAAACGACGACCTTTTGCTCTCTTA
1 TGCGGCATTTTTGTCGAAAACGCCACTAAAAACAAGGATAAAAATGACGACATTTTGCTCTCTTA
*
7677414 ATACATATTT
66 ATACATACTT
* * * * * * * * **
7677424 TACGGCGTTTATGTCGAAAATGCCACAAAAAACAAGGATAAAAATGATGTCATTTTCCTCTCACA
1 TGCGGCATTTTTGTCGAAAACGCCACTAAAAACAAGGATAAAAATGACGACATTTTGCTCTCTTA
7677489 ATACATA-TT
66 ATACATACTT
* *
7677498 TGCGGCATTTTTGTCGAAAATGCCACTAAAAACAAGGATAAAAATG-CGGACATTTTGCACTCTT
1 TGCGGCATTTTTGTCGAAAACGCCACTAAAAACAAGGATAAAAATGAC-GACATTTTGCTCTCTT
7677562 AATACA-ACTT
65 AATACATACTT
* *
7677572 AGCGGCATTTTTTTCGAAAACGCCA
1 TGCGGCATTTTTGTCGAAAACGCCA
7677597 GTAATGCACA
Statistics
Matches: 143, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
73 1 0.01
74 85 0.59
75 57 0.40
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (75 bp):
TGCGGCATTTTTGTCGAAAACGCCACTAAAAACAAGGATAAAAATGACGACATTTTGCTCTCTTA
ATACATACTT
Found at i:7677699 original size:115 final size:115
Alignment explanation
Indices: 7677579--7677839 Score: 274
Period size: 115 Copynumber: 2.3 Consensus size: 115
7677569 CTTAGCGGCA
* * * * * ** *
7677579 TTTTT-TTCGAAAACGCCAGTAATGCACAACCTTTTGCGGCGTTTTTTGTTGAAACGCCACTAAA
1 TTTTTGTTC-AAAACGCCAGTAAAGAACAACATTTTGCGGC-ATTTCTGAGGAAACACCACTAAA
* *
7677643 AACAAGGATAAAAAACGACAACATTTTGTAATCTTAATGCATTTTTGTGGTG
64 AACAAGCATAAAAAACGACAACATTTTGCAATCTTAATGCATTTTTGTGGTG
* * * *
7677695 TTTTTGTTCTAAACTCCGGTAAAGAACAACATTTTGTGGCATTTCTGAGGAAACACCACTAAAAA
1 TTTTTGTTCAAAACGCCAGTAAAGAACAACATTTTGCGGCATTTCTGAGGAAACACCACTAAAAA
** * * * *
7677760 CAAGCATGGAAAACGACGACGTTTTGCACTCTTAATGCATTTTTGGGGCT-
66 CAAGCATAAAAAACGACAACATTTTGCAATCTTAATGCATTTTTGTGG-TG
* * *
7677810 TTTTTGTTGAAAACACCGGTAAAGAACAAC
1 TTTTTGTTCAAAACGCCAGTAAAGAACAAC
7677840 CTGTTGCACT
Statistics
Matches: 120, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
115 87 0.73
116 30 0.25
117 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (115 bp):
TTTTTGTTCAAAACGCCAGTAAAGAACAACATTTTGCGGCATTTCTGAGGAAACACCACTAAAAA
CAAGCATAAAAAACGACAACATTTTGCAATCTTAATGCATTTTTGTGGTG
Found at i:7677908 original size:61 final size:60
Alignment explanation
Indices: 7677781--7677908 Score: 132
Period size: 60 Copynumber: 2.1 Consensus size: 60
7677771 AACGACGACG
* * * * * * *
7677781 TTTTGCACTCTTAATGCATTTTTGGGGCTTTTTTGTTGAAAACACCGGTAAAGAACAACC
1 TTTTGCACTCTTAATACATTTTTGCGCCTATTTTGATGAAAACACCGGAAAAGAACAACA
* * * *
7677841 TGTTGCACTCTTATTACATTTTTGCGCCGTATTTTGATGAAAACACC-GAAAATGCATAACA
1 TTTTGCACTCTTAATACATTTTTGCGCC-TATTTTGATGAAAACACCGGAAAA-GAACAACA
7677902 TTTTGCA
1 TTTTGCA
7677909 TATTTTTTAT
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
60 27 0.50
61 27 0.50
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (60 bp):
TTTTGCACTCTTAATACATTTTTGCGCCTATTTTGATGAAAACACCGGAAAAGAACAACA
Found at i:7677952 original size:7 final size:7
Alignment explanation
Indices: 7677940--7678006 Score: 73
Period size: 7 Copynumber: 9.6 Consensus size: 7
7677930 CATTGGTAAT
7677940 CCTAAAC
1 CCTAAAC
7677947 CCTAAAC
1 CCTAAAC
* *
7677954 ACTAACC
1 CCTAAAC
7677961 CCT-AAC
1 CCTAAAC
*
7677967 CCTTAAC
1 CCTAAAC
*
7677974 CCTTAAC
1 CCTAAAC
7677981 CCTTAAAC
1 CC-TAAAC
7677989 CCTAAAC
1 CCTAAAC
*
7677996 CCTAAAT
1 CCTAAAC
7678003 CCTA
1 CCTA
7678007 CTAATAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
6 5 0.10
7 41 0.79
8 6 0.12
ACGTcount: A:0.37, C:0.42, G:0.00, T:0.21
Consensus pattern (7 bp):
CCTAAAC
Found at i:7678238 original size:7 final size:7
Alignment explanation
Indices: 7678219--7678358 Score: 61
Period size: 7 Copynumber: 19.6 Consensus size: 7
7678209 TTATAAAGCA
7678219 TAAACCCC
1 TAAA-CCC
7678227 T-AACCC
1 TAAACCC
*
7678233 TAAACCT
1 TAAACCC
7678240 TAAACCC
1 TAAACCC
*
7678247 ATAAA--T
1 -TAAACCC
7678253 TAAACCC
1 TAAACCC
*
7678260 TAAACCA
1 TAAACCC
*
7678267 TAATCATCAC
1 TAA--A-CCC
*
7678277 TAAACTCA
1 TAAAC-CC
* *
7678285 TAATCCA
1 TAAACCC
*
7678292 AAAACCC
1 TAAACCC
*
7678299 TAAACCA
1 TAAACCC
*
7678306 TATACCC
1 TAAACCC
**
7678313 TAAACAT
1 TAAACCC
7678320 TAAACCC
1 TAAACCC
* *
7678327 TAAATCA
1 TAAACCC
*
7678334 TATACCC
1 TAAACCC
*
7678341 TAAACCA
1 TAAACCC
7678348 TAAACCC
1 TAAACCC
7678355 TAAA
1 TAAA
7678359 TTATAATGAT
Statistics
Matches: 94, Mismatches: 30, Indels: 17
0.67 0.21 0.12
Matches are distributed among these distances:
5 4 0.04
6 4 0.04
7 71 0.76
8 10 0.11
9 1 0.01
10 4 0.04
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:7678335 original size:28 final size:28
Alignment explanation
Indices: 7678293--7678359 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
7678283 CATAATCCAA
*
7678293 AAACCCTAAACCATATACCCTAAA-CATT
1 AAACCCTAAATCATATACCCTAAACCA-T
7678321 AAACCCTAAATCATATACCCTAAACCAT
1 AAACCCTAAATCATATACCCTAAACCAT
7678349 AAACCCTAAAT
1 AAACCCTAAAT
7678360 TATAATGATA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (28 bp):
AAACCCTAAATCATATACCCTAAACCAT
Found at i:7678364 original size:14 final size:14
Alignment explanation
Indices: 7678293--7678358 Score: 89
Period size: 14 Copynumber: 4.7 Consensus size: 14
7678283 CATAATCCAA
7678293 AAACCCTAAACCAT
1 AAACCCTAAACCAT
*
7678307 ATACCCTAAA-CATT
1 AAACCCTAAACCA-T
*
7678321 AAACCCTAAATCAT
1 AAACCCTAAACCAT
*
7678335 ATACCCTAAACCAT
1 AAACCCTAAACCAT
7678349 AAACCCTAAA
1 AAACCCTAAA
7678359 TTATAATGAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
13 2 0.04
14 41 0.91
15 2 0.04
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (14 bp):
AAACCCTAAACCAT
Found at i:7679002 original size:40 final size:41
Alignment explanation
Indices: 7678948--7679025 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 41
7678938 TTTTGCGGCG
* *
7678948 TTTTTGAACAAGTGCCGCTAATGGTCGACCTAT-GCGGCAT
1 TTTTTGAAAAAGTGCCGCTAATGCTCGACCTATAGCGGCAT
* *
7678988 TTTTTTAAAAAGTGCCGCTAATGCTCGATCTATAGCGG
1 TTTTTGAAAAAGTGCCGCTAATGCTCGACCTATAGCGG
7679026 AAATTTTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
40 29 0.88
41 4 0.12
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (41 bp):
TTTTTGAAAAAGTGCCGCTAATGCTCGACCTATAGCGGCAT
Found at i:7679049 original size:194 final size:194
Alignment explanation
Indices: 7678654--7679049 Score: 478
Period size: 194 Copynumber: 2.0 Consensus size: 194
7678644 TTAAAATGCG
* * *
7678654 CCGCTAATGCTCGATCTATAGCGGCGTTTTCCAAAAAGCGTCGTTAATGCAACTAAAGCTCAACA
1 CCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCGCTAATGCAACTAAAGCTCAACA
* ** *
7678719 TAAAACGATGGCGTTGTGCTTAATTTTTTGCGGCGTTTTTTGAAAAAGCGCCGCTAGTGGGTAGA
66 TAAAACAACAGCGTTGTGCTTAATTTTTTGCGGCGTTTTTTGAAAAAGCGCCGCTAATGGGTAGA
* * *** * *
7678784 CCTATAGCGGTATTTTTAAAAAGCGCCGCCAATGCTCGGTAATAGTGGTGTTTTTCTACAAACG
131 CCTATAGCGGTATTTTTAAAAAGCGCCGCCAATGCTCGATAATAGCGGAAATTTTATACAAACA
*
7678848 TCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCGCTAATGTC-ACTAAAGCTCAAC
1 CCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCGCTAATG-CAACTAAAGCTCAAC
** * * *
7678912 ATAAAACAACAGTTTTGTGC-TAACTTTTTTGCGGCG-TTTTTGAACAAGTGCCGCTAAT-GGTC
65 ATAAAACAACAGCGTTGTGCTTAA-TTTTTTGCGGCGTTTTTTGAAAAAGCGCCGCTAATGGGTA
* * * * *
7678974 GACCTAT-GCGGCATTTTTTTAAAAAGTGCCGCTAATGCTCGATCTATAGCGGAAATTTTATAGA
129 GACCTATAGCGG--TATTTTTAAAAAGCGCCGCCAATGCTCGAT-AATAGCGGAAATTTTATACA
*
7679038 AGCA
191 AACA
7679042 CCGCTAAT
1 CCGCTAAT
7679050 TGTCAACCTA
Statistics
Matches: 170, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
191 4 0.02
192 10 0.06
193 48 0.28
194 107 0.63
195 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (194 bp):
CCGCTAATGCTCGATCTATAGCAGCGTTTTCCAAAAAGCGCCGCTAATGCAACTAAAGCTCAACA
TAAAACAACAGCGTTGTGCTTAATTTTTTGCGGCGTTTTTTGAAAAAGCGCCGCTAATGGGTAGA
CCTATAGCGGTATTTTTAAAAAGCGCCGCCAATGCTCGATAATAGCGGAAATTTTATACAAACA
Found at i:7680109 original size:26 final size:27
Alignment explanation
Indices: 7680071--7680121 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
7680061 TATAACCATT
*
7680071 AAATATTTGTAATTAGT-ATTTTAAAA
1 AAATATTTGTAATTAATGATTTTAAAA
*
7680097 AAATATTTTTAATTAATGATTTTAA
1 AAATATTTGTAATTAATGATTTTAA
7680122 TACATTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (27 bp):
AAATATTTGTAATTAATGATTTTAAAA
Found at i:7683756 original size:21 final size:22
Alignment explanation
Indices: 7683713--7683758 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
7683703 TTCATATGAT
7683713 TGAATAAATAAATATTTTAATA
1 TGAATAAATAAATATTTTAATA
* * *
7683735 TGAATAATTTAAT-TTTTTATA
1 TGAATAAATAAATATTTTAATA
7683756 TGA
1 TGA
7683759 TTGTCTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.48
Consensus pattern (22 bp):
TGAATAAATAAATATTTTAATA
Found at i:7684378 original size:4 final size:4
Alignment explanation
Indices: 7684371--7684428 Score: 71
Period size: 4 Copynumber: 13.8 Consensus size: 4
7684361 TTTAAGGTAA
* *
7684371 AATT AATT AGTTT AATT AACTT AATTT AATT AATT AACT AATT AATT AATT
1 AATT AATT A-ATT AATT AA-TT AA-TT AATT AATT AATT AATT AATT AATT
7684422 AATT AAT
1 AATT AAT
7684429 ATTTTTGGGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
4 36 0.77
5 11 0.23
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:7684820 original size:14 final size:15
Alignment explanation
Indices: 7684771--7684820 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 15
7684761 TGGAAAAATA
*
7684771 AATTTTAATTTACCTAT
1 AATTTT-ATTT-CATAT
7684788 AATTTTATTTCAT-T
1 AATTTTATTTCATAT
*
7684802 TATTTT-TTTCATAT
1 AATTTTATTTCATAT
7684816 AATTT
1 AATTT
7684821 GTAACGCCCC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 6 0.21
14 11 0.38
15 2 0.07
16 4 0.14
17 6 0.21
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (15 bp):
AATTTTATTTCATAT
Found at i:7685210 original size:12 final size:12
Alignment explanation
Indices: 7685188--7685261 Score: 64
Period size: 12 Copynumber: 6.2 Consensus size: 12
7685178 TCCATTCTCC
7685188 TTCCTTTCTTTTT
1 TTCC-TTCTTTTT
7685201 TTCCTTCTTTTT
1 TTCCTTCTTTTT
*
7685213 TTCGTTC-TTTT
1 TTCCTTCTTTTT
*
7685224 TT-CTTTTTTCTT
1 TTCCTTCTTT-TT
*
7685236 TTCCTTC-CTTT
1 TTCCTTCTTTTT
* *
7685247 TTCTTTTTTTTT
1 TTCCTTCTTTTT
7685259 TTC
1 TTC
7685262 TTTTTGATAT
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
10 2 0.04
11 15 0.31
12 25 0.51
13 7 0.14
ACGTcount: A:0.00, C:0.22, G:0.01, T:0.77
Consensus pattern (12 bp):
TTCCTTCTTTTT
Found at i:7685223 original size:23 final size:20
Alignment explanation
Indices: 7685192--7685266 Score: 73
Period size: 23 Copynumber: 3.6 Consensus size: 20
7685182 TTCTCCTTCC
*
7685192 TTTCTT-TTTTTCCTTCTTTT
1 TTTCTTCTTTTTTCTT-TTTT
7685212 TTTCGTTCTTTTTTCTTTTTTCT
1 TTTC-TTCTTTTTTC-TTTTT-T
*
7685235 TTTCCTTCCTTTTTCTTTTTT
1 TTT-CTTCTTTTTTCTTTTTT
7685256 TTT-TTCTTTTT
1 TTTCTTCTTTTT
7685267 GATATGTCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
19 7 0.15
20 4 0.09
21 6 0.13
22 14 0.30
23 15 0.32
24 1 0.02
ACGTcount: A:0.00, C:0.19, G:0.01, T:0.80
Consensus pattern (20 bp):
TTTCTTCTTTTTTCTTTTTT
Found at i:7685229 original size:7 final size:7
Alignment explanation
Indices: 7685217--7685266 Score: 59
Period size: 7 Copynumber: 7.1 Consensus size: 7
7685207 CTTTTTTTCG
7685217 TTCTTTT
1 TTCTTTT
7685224 TTCTTTT
1 TTCTTTT
7685231 TTCTTTT
1 TTCTTTT
*
7685238 CCTTCCTTT
1 --TTCTTTT
7685247 TTC-TTT
1 TTCTTTT
7685253 TT-TTTT
1 TTCTTTT
7685259 TTCTTTT
1 TTCTTTT
7685266 T
1 T
7685267 GATATGTCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
6 10 0.26
7 22 0.58
9 6 0.16
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (7 bp):
TTCTTTT
Found at i:7685945 original size:63 final size:62
Alignment explanation
Indices: 7685817--7686013 Score: 186
Period size: 63 Copynumber: 3.1 Consensus size: 62
7685807 TGTGTTAGAT
* * *
7685817 CGTGTGACAGGCCATGTGACTCATTGTTTATCATTAAGGACCACACGGACCAGAGACACAGG
1 CGTGTGTCAGGCCATGTGACTCACTGTTTATCATTAAAGACCACACGGACCAGAGACACAGG
* *
7685879 CGTGTGTCTAGGCCATGTGACTCACTGTTTGTCATTAAAGACCACACAGG-CCAGAGACA-TGAG
1 CGTGTGTC-AGGCCATGTGACTCACTGTTTATCATTAAAGACCACAC-GGACCAGAGACACAG-G
* * * * * * * * *
7685942 CGTGTGTCCAGGTCGTGTGACCCACTATTTA-CGATTTAGGACTACACGGA-CATATGACACGGG
1 CGTGTGT-CAGGCCATGTGACTCACTGTTTATC-ATTAAAGACCACACGGACCAGA-GACACAGG
7686005 CGTGTGTCA
1 CGTGTGTCA
7686014 AGCCGTGTAA
Statistics
Matches: 112, Mismatches: 15, Indels: 16
0.78 0.10 0.11
Matches are distributed among these distances:
62 16 0.14
63 92 0.82
64 4 0.04
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (62 bp):
CGTGTGTCAGGCCATGTGACTCACTGTTTATCATTAAAGACCACACGGACCAGAGACACAGG
Found at i:7693089 original size:30 final size:30
Alignment explanation
Indices: 7693055--7693120 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
7693045 AATTTATATT
7693055 TAAAATATGAGTAAAAATTTTTGCAAAATA
1 TAAAATATGAGTAAAAATTTTTGCAAAATA
* ***
7693085 TAAAATCTTTTTAAAAATTTTTGCAAAATA
1 TAAAATATGAGTAAAAATTTTTGCAAAATA
7693115 TAAAAT
1 TAAAAT
7693121 CTTTTTAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.38
Consensus pattern (30 bp):
TAAAATATGAGTAAAAATTTTTGCAAAATA
Found at i:7693121 original size:30 final size:30
Alignment explanation
Indices: 7693066--7693129 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
7693056 AAAATATGAG
7693066 TAAAAATTTTTGCAAAATATAAAATCTTTT
1 TAAAAATTTTTGCAAAATATAAAATCTTTT
7693096 TAAAAATTTTTGCAAAATATAAAATCTTTT
1 TAAAAATTTTTGCAAAATATAAAATCTTTT
7693126 TAAA
1 TAAA
7693130 GTAAATAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (30 bp):
TAAAAATTTTTGCAAAATATAAAATCTTTT
Found at i:7705377 original size:40 final size:40
Alignment explanation
Indices: 7705322--7705501 Score: 256
Period size: 40 Copynumber: 4.5 Consensus size: 40
7705312 TTCGAATGAT
*
7705322 ATCCGAGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
7705362 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
7705402 ATCCGGGTTAATTCCCGAAAGCAATTGTGTGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
7705442 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
7705483 A-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGTTAAT-TCCCGAAG
7705502 ACAATCGAGT
Statistics
Matches: 125, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 122 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:7705526 original size:80 final size:80
Alignment explanation
Indices: 7705360--7705541 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 80
7705350 GCGAGTTACT
* * *
7705360 AAATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAAGCA
1 AAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAATTCCCGAAAGCA
* * *
7705425 ATTGTGTGAGTTACC
66 ATCGAGTGAGGTACC
*
7705440 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCT-ATGTCCCG-AAG
1 AAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAATTACTA-AATCCGGGCTAAT-TCCCGAAAG
*
7705502 ACAATCGAGTG-GGTAGCT
64 -CAATCGAGTGAGGTA-CC
* *
7705520 ATATCC-GGTTAAATTCCGAAGG
1 AAATCCGGGTTAAATCCCGAAGG
7705542 TACGTGATTC
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
79 22 0.25
80 64 0.73
81 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (80 bp):
AAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAATTCCCGAAAGCA
ATCGAGTGAGGTACC
Found at i:7713458 original size:40 final size:40
Alignment explanation
Indices: 7713413--7713592 Score: 256
Period size: 40 Copynumber: 4.5 Consensus size: 40
7713403 TTCGAATGAT
*
7713413 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGACTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
7713453 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
7713493 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
7713533 ATCCGGGTTAAGTCCTGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
7713574 A-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGTTAAT-TCCCGAAG
7713593 ACAATCGAGT
Statistics
Matches: 126, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:7715691 original size:18 final size:18
Alignment explanation
Indices: 7715666--7715721 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
7715656 CTTGGCCCAT
7715666 TACAGTAACAGTAAACAG
1 TACAGTAACAGTAAACAG
* *
7715684 TGCAGTAATAGTAAACAG
1 TACAGTAACAGTAAACAG
* *
7715702 TATAGTAACAGTAAGCAG
1 TACAGTAACAGTAAACAG
7715720 TA
1 TA
7715722 TGCAAGTCCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.46, C:0.12, G:0.20, T:0.21
Consensus pattern (18 bp):
TACAGTAACAGTAAACAG
Found at i:7716077 original size:27 final size:27
Alignment explanation
Indices: 7716047--7716159 Score: 104
Period size: 26 Copynumber: 4.3 Consensus size: 27
7716037 ACAAATCACA
*
7716047 TAGGGGCAAAACAGTCAATTTACCATG
1 TAGGGGCAAAACAGTCAATTTACCACG
*** * *
7716074 TAGGGGCATTTCAGTCATTTTACCACC
1 TAGGGGCAAAACAGTCAATTTACCACG
* * * *
7716101 TA-GGGCAAAATAGTCATTTTGCCACA
1 TAGGGGCAAAACAGTCAATTTACCACG
* *
7716127 TAAGGGC-AAACAGTCAATTTACCATG
1 TAGGGGCAAAACAGTCAATTTACCACG
7716153 TAGGGGC
1 TAGGGGC
7716160 GTTTCAGTTA
Statistics
Matches: 67, Mismatches: 18, Indels: 3
0.76 0.20 0.03
Matches are distributed among these distances:
26 40 0.60
27 27 0.40
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (27 bp):
TAGGGGCAAAACAGTCAATTTACCACG
Found at i:7716106 original size:26 final size:27
Alignment explanation
Indices: 7716047--7716177 Score: 88
Period size: 27 Copynumber: 4.9 Consensus size: 27
7716037 ACAAATCACA
* * * *
7716047 TAGGGGCAAAACAGTCAATTTACCATG
1 TAGGGGCATATCAGTCATTTTACCACG
* *
7716074 TAGGGGCATTTCAGTCATTTTACCACC
1 TAGGGGCATATCAGTCATTTTACCACG
* * *
7716101 TA-GGGCAAAAT-AGTCATTTTGCCACA
1 TAGGGGC-ATATCAGTCATTTTACCACG
* * * *
7716127 TAAGGGCA-AACAGTCAATTTACCATG
1 TAGGGGCATATCAGTCATTTTACCACG
* * *
7716153 TAGGGGCGTTTCAGTTATTTTACCA
1 TAGGGGCATATCAGTCATTTTACCA
7716178 ATGGAACGGT
Statistics
Matches: 79, Mismatches: 21, Indels: 8
0.73 0.19 0.07
Matches are distributed among these distances:
25 1 0.01
26 37 0.47
27 41 0.52
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (27 bp):
TAGGGGCATATCAGTCATTTTACCACG
Found at i:7729369 original size:18 final size:18
Alignment explanation
Indices: 7729343--7729383 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7729333 CCATAATGTG
7729343 GCCCATGTGGGCCCAC-AA
1 GCCCATGT-GGCCCACAAA
*
7729361 GCCCGTGTGGCCCACAAA
1 GCCCATGTGGCCCACAAA
7729379 GCCCA
1 GCCCA
7729384 AAAATGGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.22, C:0.41, G:0.27, T:0.10
Consensus pattern (18 bp):
GCCCATGTGGCCCACAAA
Found at i:7738686 original size:26 final size:27
Alignment explanation
Indices: 7738654--7738724 Score: 90
Period size: 26 Copynumber: 2.6 Consensus size: 27
7738644 TAACTTTTTT
7738654 AAAATTTAAAAATATTAAAAA-ATAAA
1 AAAATTTAAAAATATTAAAAAGATAAA
* * *
7738680 AAAATTTTAAATTATCAAAAAGTATAAA
1 AAAATTTAAAAATATTAAAAAG-ATAAA
*
7738708 AATATTTAAAAATATTA
1 AAAATTTAAAAATATTA
7738725 TTGTCAAAGA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 18 0.50
28 18 0.50
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (27 bp):
AAAATTTAAAAATATTAAAAAGATAAA
Found at i:7738963 original size:18 final size:19
Alignment explanation
Indices: 7738930--7738965 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7738920 AATGAATTAT
*
7738930 TATAATTATTATATATTGG
1 TATAATTATCATATATTGG
7738949 TATAATT-TCATATATTG
1 TATAATTATCATATATTG
7738966 TCCCTTGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (19 bp):
TATAATTATCATATATTGG
Found at i:7740148 original size:10 final size:9
Alignment explanation
Indices: 7740128--7740232 Score: 54
Period size: 9 Copynumber: 11.3 Consensus size: 9
7740118 ATTCAAATAT
7740128 TAAAAATTA
1 TAAAAATTA
7740137 TAAAAA-TA
1 TAAAAATTA
* **
7740145 TATAAATCG
1 TAAAAATTA
*
7740154 TAAATAAATA
1 TAAA-AATTA
7740164 TAAAAAATTA
1 T-AAAAATTA
*
7740174 TAAAATTTTA
1 TAAAA-ATTA
**
7740184 TAAAAATCG
1 TAAAAATTA
*
7740193 TACAAATT-
1 TAAAAATTA
7740201 TATAAAATGTA
1 TA-AAAAT-TA
*
7740212 TAGAAA-TA
1 TAAAAATTA
7740220 TAAAAAATTA
1 T-AAAAATTA
7740230 TAA
1 TAA
7740233 GATTTTATAA
Statistics
Matches: 70, Mismatches: 17, Indels: 18
0.67 0.16 0.17
Matches are distributed among these distances:
8 12 0.17
9 30 0.43
10 23 0.33
11 5 0.07
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:7740190 original size:19 final size:19
Alignment explanation
Indices: 7740166--7740231 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
7740156 AATAAATATA
7740166 AAAAATTATA-AAATTTTAT
1 AAAAATTATACAAA-TTTAT
**
7740185 AAAAATCGTACAAATTTAT
1 AAAAATTATACAAATTTAT
* *
7740204 -AAAATGTATAGAAATATA-
1 AAAAAT-TATACAAATTTAT
7740222 AAAAATTATA
1 AAAAATTATA
7740232 AGATTTTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
18 9 0.24
19 26 0.68
20 3 0.08
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAATTATACAAATTTAT
Found at i:7740208 original size:37 final size:36
Alignment explanation
Indices: 7740096--7740218 Score: 94
Period size: 37 Copynumber: 3.3 Consensus size: 36
7740086 TAAAAGCTAT
*
7740096 AAATTATTAAATTTTAATAAAAAT--T-CAAATATTAA
1 AAATTATAAAATTTT-ATAAAAATCGTACAAAT-TTAA
* * * *
7740131 AAATTATAAAA--ATATATAAATCGTAAATAAATATAAA
1 AAATTATAAAATTTTATAAAAATCGT--ACAAAT-TTAA
7740168 AAATTATAAAATTTTATAAAAATCGTACAAATTTATA
1 AAATTATAAAATTTTATAAAAATCGTACAAATTTA-A
7740205 AAATGTATAGAAAT
1 AAAT-TATA-AAAT
7740219 ATAAAAAATT
Statistics
Matches: 69, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
32 7 0.10
33 1 0.01
34 1 0.01
35 10 0.14
36 2 0.03
37 29 0.42
38 4 0.06
39 15 0.22
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (36 bp):
AAATTATAAAATTTTATAAAAATCGTACAAATTTAA
Found at i:7740260 original size:56 final size:57
Alignment explanation
Indices: 7740143--7740281 Score: 165
Period size: 56 Copynumber: 2.4 Consensus size: 57
7740133 ATTATAAAAA
* * * *
7740143 TATATAAATCGTAAATAAATATAAAAAATTATAAAATTTTATAAAAATCGTACAAATT
1 TATAAAAAT-GTAAAGAAATATAAAAAATTATAAAATTTTATAAAAATCATACAAAGT
* * * *
7740201 TAT-AAAATGTATAGAAATATAAAAAATTATAAGATTTTAT-AAAGTCATAAGAAAGT
1 TATAAAAATGTAAAGAAATATAAAAAATTATAAAATTTTATAAAAATCAT-ACAAAGT
7740257 TATACAAAATGTAAAGAAATATAAA
1 TATA-AAAATGTAAAGAAATATAAA
7740282 TTTTATAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
55 6 0.09
56 37 0.54
57 4 0.06
58 22 0.32
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.32
Consensus pattern (57 bp):
TATAAAAATGTAAAGAAATATAAAAAATTATAAAATTTTATAAAAATCATACAAAGT
Found at i:7740445 original size:28 final size:29
Alignment explanation
Indices: 7740418--7740478 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
7740408 TAAGGGTTAT
7740418 TAATTTTT-TA-TTTTAATAAAATTTTTA
1 TAATTTTTATATTTTTAATAAAATTTTTA
* * *
7740445 TGATTTTTATATTTTTATTAAAA-TTTAA
1 TAATTTTTATATTTTTAATAAAATTTTTA
7740473 TAATTT
1 TAATTT
7740479 ATCTAAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
27 7 0.25
28 11 0.39
29 10 0.36
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (29 bp):
TAATTTTTATATTTTTAATAAAATTTTTA
Found at i:7740514 original size:13 final size:14
Alignment explanation
Indices: 7740475--7740517 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
7740465 AAATTTAATA
7740475 ATTTATCTAAATTTT
1 ATTT-TCTAAATTTT
7740490 ATTTT-TATAATTTT
1 ATTTTCTA-AATTTT
7740504 -TTTTCTAAATTTT
1 ATTTTCTAAATTTT
7740517 A
1 A
7740518 ATAAGAGTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
13 12 0.48
14 9 0.36
15 4 0.16
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (14 bp):
ATTTTCTAAATTTT
Found at i:7741926 original size:12 final size:12
Alignment explanation
Indices: 7741904--7741961 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
7741894 ATTATTTATT
7741904 AACATTGTTCATG
1 AACA-TGTTCATG
7741917 AACATGTTCAAT-
1 AACATGTTC-ATG
* * *
7741929 TATATGTTTATG
1 AACATGTTCATG
*
7741941 AACATGTTCGTG
1 AACATGTTCATG
7741953 AACATGTTC
1 AACATGTTC
7741962 GATTAAGTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
11 2 0.06
12 28 0.78
13 6 0.17
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.40
Consensus pattern (12 bp):
AACATGTTCATG
Found at i:7741955 original size:36 final size:34
Alignment explanation
Indices: 7741898--7741984 Score: 102
Period size: 36 Copynumber: 2.4 Consensus size: 34
7741888 TTGTTTATTA
*
7741898 TTTATTAACATTGTTCATGAACATGTTCAATTATATG
1 TTTATGAACA-TGTTCATGAACATGTTCAATTA-A-G
* *
7741935 TTTATGAACATGTTCGTGAACATGTTCGATTAAG
1 TTTATGAACATGTTCATGAACATGTTCAATTAAG
*
7741969 TTAAATGAACATGTTC
1 TT-TATGAACATGTTC
7741985 TTGATCATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
34 3 0.07
35 13 0.29
36 20 0.44
37 9 0.20
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.41
Consensus pattern (34 bp):
TTTATGAACATGTTCATGAACATGTTCAATTAAG
Found at i:7744283 original size:10 final size:10
Alignment explanation
Indices: 7744268--7744297 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
7744258 TCTGAGAGCT
7744268 GAAAGGAAAC
1 GAAAGGAAAC
7744278 GAAAGGAAAC
1 GAAAGGAAAC
*
7744288 GAAATGAAAC
1 GAAAGGAAAC
7744298 CTAGTTGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.60, C:0.10, G:0.27, T:0.03
Consensus pattern (10 bp):
GAAAGGAAAC
Found at i:7744986 original size:63 final size:63
Alignment explanation
Indices: 7744887--7745013 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
7744877 GATGATGAAG
*
7744887 CAAACAGTCATCAGTAGATATTGGGTGAAATTTTACAAGTAGATTCTTAACTAAAACCCCAAT
1 CAAACAGTCATCAGTAGATATAGGGTGAAATTTTACAAGTAGATTCTTAACTAAAACCCCAAT
*
7744950 CAAACAGTCATCAGTAGATATAGGGTGAAATTTTACAAGTAGATTCTTAACTAAAACTCCAAT
1 CAAACAGTCATCAGTAGATATAGGGTGAAATTTTACAAGTAGATTCTTAACTAAAACCCCAAT
7745013 C
1 C
7745014 GATTTCAACA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.28
Consensus pattern (63 bp):
CAAACAGTCATCAGTAGATATAGGGTGAAATTTTACAAGTAGATTCTTAACTAAAACCCCAAT
Found at i:7748686 original size:21 final size:21
Alignment explanation
Indices: 7748628--7748680 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
7748618 AAACTATATT
*
7748628 TTAAATATATA-AATATAATCA
1 TTAAATATTTATAAT-TAATCA
*
7748649 TTAAATATTTATAATTAATTA
1 TTAAATATTTATAATTAATCA
7748670 TTAACATATTT
1 TTAA-ATATTT
7748681 GTATTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAAATATTTATAATTAATCA
Found at i:7749821 original size:13 final size:13
Alignment explanation
Indices: 7749803--7749827 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7749793 TAAAAGGGTT
7749803 ATTAATTAAAAAG
1 ATTAATTAAAAAG
7749816 ATTAATTAAAAA
1 ATTAATTAAAAA
7749828 AAAACTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAG
Found at i:7753918 original size:18 final size:18
Alignment explanation
Indices: 7753882--7753918 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7753872 AATAATGTGG
* *
7753882 TGTTTTAATATGTTTTAA
1 TGTTTTAATATATTGTAA
7753900 TGTTTTAATATATTGTAA
1 TGTTTTAATATATTGTAA
7753918 T
1 T
7753919 AAATGTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (18 bp):
TGTTTTAATATATTGTAA
Found at i:7754209 original size:43 final size:45
Alignment explanation
Indices: 7754154--7754278 Score: 128
Period size: 51 Copynumber: 2.7 Consensus size: 45
7754144 GGCATCCAAA
* * *
7754154 CTCGTTAAGAGGTCCGAGTTCATTATGGATGC-A-AGCATCTGAT
1 CTCGTTGAGAGGTCCGAGTTCATTATGGATGCAATAACATCTGAG
* * *
7754197 CTTGTTGAGAGGTTCGAGTTCATAATAGATGTGATTCATATAACATCTGAG
1 CTCGTTGAGAGGTCCGAGTTCAT--T--ATG-GATGCA-ATAACATCTGAG
7754248 CTCGTTGAGAGGTCCGAGTTCATTATGGATG
1 CTCGTTGAGAGGTCCGAGTTCATTATGGATG
7754279 TGTTACATGT
Statistics
Matches: 65, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
43 20 0.31
45 1 0.02
46 3 0.05
47 6 0.09
48 4 0.06
49 1 0.02
50 1 0.02
51 29 0.45
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (45 bp):
CTCGTTGAGAGGTCCGAGTTCATTATGGATGCAATAACATCTGAG
Found at i:7757524 original size:24 final size:24
Alignment explanation
Indices: 7757492--7757549 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
7757482 GTGTTTTACA
7757492 ATTGAAATTGATTG-ATTTAGTATGTG
1 ATTG-AATTGATTGAATTTA-TAT-TG
*
7757518 A-TGAATTTATTGAATTTATATTG
1 ATTGAATTGATTGAATTTATATTG
7757541 ATTGAATTG
1 ATTGAATTG
7757550 GTATATATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
23 3 0.11
24 17 0.61
25 7 0.25
26 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (24 bp):
ATTGAATTGATTGAATTTATATTG
Found at i:7757813 original size:40 final size:40
Alignment explanation
Indices: 7757747--7757844 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
7757737 GGATTAATTT
* * *
7757747 GATGAGGCACTAGGTGCC-AA-T-TTACTTCGATTTAACC
1 GATGAGACACTGGGTGCCAAATTATTACTTCGAATTAACC
* *
7757784 GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCC
1 GATGAGACACTGGGTGCCAAATTATTACTTCGAATTAACC
*
7757824 GATGAGGCACTGGGTGCCAAA
1 GATGAGACACTGGGTGCCAAA
7757845 CTGGTGTATT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
37 15 0.29
38 2 0.04
39 1 0.02
40 33 0.65
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (40 bp):
GATGAGACACTGGGTGCCAAATTATTACTTCGAATTAACC
Found at i:7760430 original size:2 final size:2
Alignment explanation
Indices: 7760423--7760453 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7760413 TTATAAATAA
*
7760423 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7760454 AGTTATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7761974 original size:21 final size:22
Alignment explanation
Indices: 7761936--7761980 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
7761926 TTGAGTTTTG
*
7761936 ATTTCATATTATTATATTAATT
1 ATTTAATATTATTATATTAATT
*
7761958 ATTTAATATTA-TATATTCATT
1 ATTTAATATTATTATATTAATT
7761979 AT
1 AT
7761981 ATTTTTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTTAATATTATTATATTAATT
Found at i:7762122 original size:22 final size:22
Alignment explanation
Indices: 7762092--7762133 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7762082 TTTTACATAC
7762092 TATATTATTATGTT-ATTTTAG
1 TATATTATTATGTTAATTTTAG
*
7762113 TATAGTTATTATTTTAATTTT
1 TATA-TTATTATGTTAATTTT
7762134 CACTTTTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 9 0.50
23 5 0.28
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (22 bp):
TATATTATTATGTTAATTTTAG
Found at i:7764518 original size:35 final size:35
Alignment explanation
Indices: 7764479--7764546 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
7764469 AAAGTTTGGT
7764479 GAAAATGCATGATCGACTTGGGAAGAAGAGTCTAC
1 GAAAATGCATGATCGACTTGGGAAGAAGAGTCTAC
* *
7764514 GAAAATGCGTGATTGACTTGGGAAGAAGAGTCT
1 GAAAATGCATGATCGACTTGGGAAGAAGAGTCT
7764547 TTCATGTTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.22
Consensus pattern (35 bp):
GAAAATGCATGATCGACTTGGGAAGAAGAGTCTAC
Found at i:7764754 original size:19 final size:20
Alignment explanation
Indices: 7764732--7764770 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
7764722 TTTATACTAC
*
7764732 TATATATTTT-TTAAATTTT
1 TATAAATTTTATTAAATTTT
*
7764751 TATAAATTTTATTTAATTTT
1 TATAAATTTTATTAAATTTT
7764771 CAGAGGTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TATAAATTTTATTAAATTTT
Found at i:7764925 original size:24 final size:26
Alignment explanation
Indices: 7764888--7764954 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 26
7764878 GCGTAACCAT
*
7764888 TTTTTATATTAAAATATTATT-TTTTA
1 TTTTTA-AATAAAATATTATTATTTTA
7764914 -TTTTAAATAAAATATTATTATTTTA
1 TTTTTAAATAAAATATTATTATTTTA
7764939 TTTTTAAA-AAAATATT
1 TTTTTAAATAAAATATT
7764955 TAAATATATA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
24 13 0.34
25 18 0.47
26 7 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (26 bp):
TTTTTAAATAAAATATTATTATTTTA
Found at i:7765493 original size:34 final size:33
Alignment explanation
Indices: 7765446--7765510 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 33
7765436 TGTTTTTATA
*
7765446 ATTATTTTAAAATTAATT-TGTTAGTAATTTAGG
1 ATTATGTTAAAATT-ATTCTGTTAGTAATTTAGG
* *
7765479 ATTATGTTATAAATTGTTCTGTTTGTAATTTA
1 ATTATGTTA-AAATTATTCTGTTAGTAATTTA
7765511 TTAGTAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 10 0.37
34 17 0.63
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.54
Consensus pattern (33 bp):
ATTATGTTAAAATTATTCTGTTAGTAATTTAGG
Found at i:7765508 original size:45 final size:45
Alignment explanation
Indices: 7765459--7765547 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
7765449 ATTTTAAAAT
* * *
7765459 TAATTTGTTAGTAATTTAGGATTATGTTATAAATTGTTCTGTTTG
1 TAATTTATTAGTAATTTAGGATTATGTTATAAATTATTATGTTTG
7765504 TAATTTATTAGTAATTTAGGATTATGTTATAAATTATTATGTTT
1 TAATTTATTAGTAATTTAGGATTATGTTATAAATTATTATGTTT
7765548 AGTTTAGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.30, C:0.01, G:0.15, T:0.54
Consensus pattern (45 bp):
TAATTTATTAGTAATTTAGGATTATGTTATAAATTATTATGTTTG
Found at i:7765867 original size:103 final size:102
Alignment explanation
Indices: 7765746--7766228 Score: 622
Period size: 103 Copynumber: 4.7 Consensus size: 102
7765736 TATAGTTATA
*
7765746 TATTTTGTTAGTAATTTATGGGATTATG-T-TATAAATTGTTAGTGTTTAGTATAGAGTTTTGTG
1 TATTTTGTTAGTAATTTAT--GATTAGGTTATATAAATTGTTAGTGTTTAGT-TAGAGTTTTGTG
7765809 ATTTTTTAGTAATGTAATTTAAAAAAAATAATTTTATAGT
63 ATTTTTTAGTAATGTAATTTAAAAAAAATAATTTTATAGT
* * * * *
7765849 TATTTTGTTACTAATTTATGGGATTAGG-T-TACAAATTGTTAGTGTTTAATATAGGGTGTTGTG
1 TATTTTGTTAGTAATTTAT--GATTAGGTTATATAAATTGTTAGTGTTTAGT-TAGAGTTTTGTG
* ***
7765912 ATTTTTTAGTAATCTAATTTTTTTTTAAAAATAATTTTATAGT
63 ATTTTTTAGTAATGTAA---TTTAAAAAAAATAATTTTATAGT
*
7765955 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTATGTGTTTTGTGAT
1 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTA-GAGTTTTGTGAT
* * ***
7766020 TTTTTAGTAATATATTTTTTTAAAAATAATTTTATAGT
65 TTTTTAGTAATGTAATTTAAAAAAAATAATTTTATAGT
7766058 TATTTTGTTAGTAATTTATGATTA-GTTATATAAATTGTTAGTGTTTAGTTATGAG-TTT-TGAT
1 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTA-GAGTTTTGTGAT
*
7766120 TTTTT-GTAATGTATTTCTAAAAAATAATAATTTTATAGT
65 TTTTTAGTAATGTAATT-TAAAAAA-AATAATTTTATAGT
*
7766159 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGAT
1 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAG-TTAGAGTTTTGTGAT
7766224 TTTTT
65 TTTTT
7766229 TAATATAATT
Statistics
Matches: 345, Mismatches: 23, Indels: 23
0.88 0.06 0.06
Matches are distributed among these distances:
99 10 0.03
100 13 0.04
101 41 0.12
102 56 0.16
103 126 0.37
104 16 0.05
105 3 0.01
106 80 0.23
ACGTcount: A:0.30, C:0.01, G:0.16, T:0.54
Consensus pattern (102 bp):
TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTAGAGTTTTGTGATT
TTTTAGTAATGTAATTTAAAAAAAATAATTTTATAGT
Found at i:7766218 original size:204 final size:208
Alignment explanation
Indices: 7765746--7766242 Score: 685
Period size: 209 Copynumber: 2.4 Consensus size: 208
7765736 TATAGTTATA
* * *
7765746 TATTTTGTTAGTAATTTATGGGATTATG-T-TATAAATTGTTAGTGTTTAGTATAGAGTTTTGTG
1 TATTTTGTTAGTAATTTAT--GATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTG
* **
7765809 ATTTTTTAGTAATGTAATTTAAAAAAAATAATTTTATAGTTATTTTGTTACTAATTTATGGGATT
64 ATTTTTTAGTAATATAATTTTTAAAAAATAATTTTATAGTTATTTTGTTACTAATTTAT-GGATT
* * ***
7765874 AGGTTACAAATTGTTAGTGTTTAATATAGGGTGTTGTGATTTTTTAGTAATCTAATTTTTTTTTA
128 AGGTTACAAATTGTTAGTGTTTAATATAGAGTGTTGTGATTTTTTAGTAATCTAATTTTCTAAAA
7765939 AAAATAATTTTATAGT
193 AAAATAATTTTATAGT
7765955 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAG-TTATGTGTTTTGTGA
1 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTA-GTGTTTTGTGA
* * *
7766019 TTTTTTAGTAATATATTTTTTTAAAAATAATTTTATAGTTATTTTGTTAGTAATTTAT-GATTAG
65 TTTTTTAGTAATATAATTTTTAAAAAATAATTTTATAGTTATTTTGTTACTAATTTATGGATTAG
* * * *
7766083 TTATATAAATTGTTAGTGTTTAGT-TATGAGT-TT-TGATTTTTT-GTAATGT-A-TTTCTAAAA
130 GT-TACAAATTGTTAGTGTTTAATATA-GAGTGTTGTGATTTTTTAGTAATCTAATTTTCTAAAA
7766142 AATAATAATTTTATAGT
193 AA-AATAATTTTATAGT
7766159 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGAT
1 TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGAT
7766224 TTTTT--TAATATAATTTTTA
66 TTTTTAGTAATATAATTTTTA
7766243 TATAATGTAA
Statistics
Matches: 261, Mismatches: 20, Indels: 21
0.86 0.07 0.07
Matches are distributed among these distances:
202 12 0.05
203 7 0.03
204 81 0.31
205 9 0.03
206 9 0.03
207 17 0.07
208 25 0.10
209 101 0.39
ACGTcount: A:0.30, C:0.01, G:0.15, T:0.54
Consensus pattern (208 bp):
TATTTTGTTAGTAATTTATGATTAGGTTATATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGAT
TTTTTAGTAATATAATTTTTAAAAAATAATTTTATAGTTATTTTGTTACTAATTTATGGATTAGG
TTACAAATTGTTAGTGTTTAATATAGAGTGTTGTGATTTTTTAGTAATCTAATTTTCTAAAAAAA
ATAATTTTATAGT
Found at i:7771309 original size:5 final size:6
Alignment explanation
Indices: 7771286--7771316 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
7771276 TTAAATTTAC
7771286 TAAAAA TTAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA -TAAAAA TAAAAA TAAAAA TAAAAA
7771317 GTAGTTTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:7773153 original size:46 final size:45
Alignment explanation
Indices: 7773100--7773271 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
7773090 TGGGCATCCA
7773100 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
*** * *
7773146 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCG
* *
7773193 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
*
7773239 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7773272 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.61
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCG
Found at i:7773230 original size:93 final size:93
Alignment explanation
Indices: 7773092--7773263 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
7773082 AGGATATTTG
* *
7773092 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
7773157 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
7773185 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
7773250 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
7773264 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:7778597 original size:14 final size:13
Alignment explanation
Indices: 7778574--7778605 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
7778564 GGGATATCAA
7778574 AACAATAATTAAG
1 AACAATAATTAAG
7778587 AACACATAATTAAG
1 AACA-ATAATTAAG
7778601 AACAA
1 AACAA
7778606 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:7779158 original size:19 final size:20
Alignment explanation
Indices: 7779134--7779178 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
7779124 TAAAAGCAAC
*
7779134 ACAACATCAAG-CTAAATAA
1 ACAACATCAAGTCCAAATAA
**
7779153 ACAACATTTAGTCCAAATAA
1 ACAACATCAAGTCCAAATAA
7779173 ACAACA
1 ACAACA
7779179 AAAACAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.56, C:0.22, G:0.04, T:0.18
Consensus pattern (20 bp):
ACAACATCAAGTCCAAATAA
Found at i:7779481 original size:274 final size:274
Alignment explanation
Indices: 7779162--7779954 Score: 1162
Period size: 277 Copynumber: 2.9 Consensus size: 274
7779152 AACAACATTT
* *
7779162 AGTCCAAATAAACAACAAAAACAATACAACAAGATTATAATAAAAAGAACATAAGTAAAAGTCTA
1 AGTCCAAATAAACATCAAAAACAATACAACAAGATTATAATAAAAA-AACATAAGTAAAAGTCCA
* *
7779227 AGTAAACAACATGAGTCGAAATAAACAACAACACTATAATAAAAAAAATATAAGCAAAAGTCCAA
65 AGTAAACAACATGAGTCGAAATAAACAACAACATTATAATAAAAAAAACATAAGCAAAAGTCCAA
* *
7779292 AATATAATAGAAACCTACACCAGTC-AAAAAAAAAAGAACACAACAAAAGTCCAATTAACCAACA
130 AATACAATAGAAATCTACACCAGTCAAAAAAAAAAAGAACACAACAAAAGTCCAATTAACCAACA
7779356 ACAATAACAAACCAAACCAAACTAATAACAATAACACATTAGTTCAAAAACCATTATAGAATAGT
195 ACAATAACAAACCAAACCAAACTAATAACAATAACACATTAGTTCAAAAACCATTATAGAATAGT
7779421 TCAAGTTTCTTCATG
260 TCAAGTTTCTTCATG
* *
7779436 AGTCCAAATAAACATTAAAAACAATACAACAAGATTATAATAAAAAAATATAAGTAAAAGTCCAA
1 AGTCCAAATAAACATCAAAAACAATACAACAAGATTATAATAAAAAAACATAAGTAAAAGTCCAA
*
7779501 GTAAACAACATGAGTC-AAAGTAAACAACAATATTAT-ATAACAAAAAAACATAAGCAAAAGTCC
66 GTAAACAACATGAGTCGAAA-TAAACAACAACATTATAAT-A-AAAAAAACATAAGCAAAAGTCC
* *
7779564 AAAATACAATAGAAATCTACACCAGACCAAAAAGAAAAAAGAACACAACAAAAATCCAATTAACC
128 AAAATACAATAGAAATCTACACCAG-TCAAAAA-AAAAAAGAACACAACAAAAGTCCAATTAACC
* * * *
7779629 AATAACAATAACAAACCAAACCAAATTAATAACAATAACAGATCAGTTCAAAAACCATTATAGAA
191 AACAACAATAACAAACCAAACCAAACTAATAACAATAACACATTAGTTCAAAAACCATTATAGAA
*
7779694 TAGTTTAAGTTTCTTCATG
256 TAGTTCAAGTTTCTTCATG
* * *
7779713 AGTCCAAATAAAC-TACAAAAAAAATACAACAATATTCTAATAAAAAAACATAAGTAAAAGTCCA
1 AGTCCAAATAAACAT-CAAAAACAATACAACAAGATTATAATAAAAAAACATAAGTAAAAGTCCA
* * * * * *
7779777 AGTAAATAGCATGACTCGAAGTAAATAACAACATTAAAATAAAAAAAACATAAGCAAAAGTCCAA
65 AGTAAACAACATGAGTCGAAATAAACAACAACATTATAATAAAAAAAACATAAGCAAAAGTCCAA
* * * **
7779842 AATGCAATAGAAATCTACACCAATCCAAACAAACAAAAAAAAAAACACAACAAAAGTTTAATTAA
130 AATACAATAGAAATCTACACCAGT-----CAAA-AAAAAAAAGAACACAACAAAAGTCCAATTAA
7779907 CCAACAACAATAACAAACCAAACCAAACTAATAACAATAACACCATTA
189 CCAACAACAATAACAAACCAAACCAAACTAATAACAATAACA-CATTA
7779955 TAGAATAGTT
Statistics
Matches: 464, Mismatches: 39, Indels: 25
0.88 0.07 0.05
Matches are distributed among these distances:
272 5 0.01
273 48 0.10
274 88 0.19
275 1 0.00
276 50 0.11
277 194 0.42
278 4 0.01
280 69 0.15
281 5 0.01
ACGTcount: A:0.58, C:0.18, G:0.07, T:0.18
Consensus pattern (274 bp):
AGTCCAAATAAACATCAAAAACAATACAACAAGATTATAATAAAAAAACATAAGTAAAAGTCCAA
GTAAACAACATGAGTCGAAATAAACAACAACATTATAATAAAAAAAACATAAGCAAAAGTCCAAA
ATACAATAGAAATCTACACCAGTCAAAAAAAAAAAGAACACAACAAAAGTCCAATTAACCAACAA
CAATAACAAACCAAACCAAACTAATAACAATAACACATTAGTTCAAAAACCATTATAGAATAGTT
CAAGTTTCTTCATG
Found at i:7780238 original size:19 final size:20
Alignment explanation
Indices: 7780214--7780258 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
7780204 TAAAGTTAAA
*
7780214 TTATTTAATCATTTTTA-TT
1 TTATTTAATCATTTTAATTT
* *
7780233 TTATTTTATTATTTTAATTT
1 TTATTTAATCATTTTAATTT
7780253 TTATTT
1 TTATTT
7780259 CTTTCTCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTATTTAATCATTTTAATTT
Found at i:7780246 original size:13 final size:12
Alignment explanation
Indices: 7780224--7780258 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
7780214 TTATTTAATC
7780224 ATTTTTATTTTA
1 ATTTTTATTTTA
*
7780236 TTTTATTATTTTA
1 ATTT-TTATTTTA
7780249 ATTTTTATTT
1 ATTTTTATTT
7780259 CTTTCTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
ATTTTTATTTTA
Found at i:7782889 original size:122 final size:121
Alignment explanation
Indices: 7782669--7782907 Score: 433
Period size: 122 Copynumber: 2.0 Consensus size: 121
7782659 GGTAGTGAAA
* *
7782669 GAGGTATTAGAGGAAGTGTTCGAAGTTAGGATAAGGGAGACTAGTGAAACTCTGTAAGATAGGTG
1 GAGGTATTAGAGGAAGTGTTCGAAGCTAGGATAAGGGAGACTAGTGAAACTCTATAAGATAGGTG
7782734 CGTGGATTGTGGGAAGAAAAGAGATCGCAGTCCTCTGAGGTTGGAGCCTCATTGAGG
66 CGTGGATTGTGGGAAGAAAAGAGATCGCAGTCCTCTGA-GTTGGAGCCTCATTGAGG
7782791 GAGGTATTAGAGGAAGTGTTCGAAGCTAGGATAAGGGAGACTAGTGAAACTCTATAAGATAGGTG
1 GAGGTATTAGAGGAAGTGTTCGAAGCTAGGATAAGGGAGACTAGTGAAACTCTATAAGATAGGTG
* *
7782856 CGTGGATTGTGGGAAGAAAAGAGATTGCGGTCCTCTGAGTTGGAGCCTCATT
66 CGTGGATTGTGGGAAGAAAAGAGATCGCAGTCCTCTGAGTTGGAGCCTCATT
7782908 CTTCGAAGCG
Statistics
Matches: 113, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
121 14 0.12
122 99 0.88
ACGTcount: A:0.30, C:0.11, G:0.35, T:0.24
Consensus pattern (121 bp):
GAGGTATTAGAGGAAGTGTTCGAAGCTAGGATAAGGGAGACTAGTGAAACTCTATAAGATAGGTG
CGTGGATTGTGGGAAGAAAAGAGATCGCAGTCCTCTGAGTTGGAGCCTCATTGAGG
Found at i:7783676 original size:46 final size:47
Alignment explanation
Indices: 7783596--7783689 Score: 181
Period size: 46 Copynumber: 2.0 Consensus size: 47
7783586 ATTTATATTT
7783596 TATTTTATTTTATTATTTTTATTTCTTTCTCTTTTCTCTGGACGTTC
1 TATTTTATTTTATTATTTTTATTTCTTTCTCTTTTCTCTGGACGTTC
7783643 TATTTTATTTTATTA-TTTTATTTCTTTCTCTTTTCTCTGGACGTTC
1 TATTTTATTTTATTATTTTTATTTCTTTCTCTTTTCTCTGGACGTTC
7783689 T
1 T
7783690 TTCTTCTTCT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 32 0.68
47 15 0.32
ACGTcount: A:0.13, C:0.15, G:0.06, T:0.66
Consensus pattern (47 bp):
TATTTTATTTTATTATTTTTATTTCTTTCTCTTTTCTCTGGACGTTC
Found at i:7784380 original size:21 final size:21
Alignment explanation
Indices: 7784350--7784389 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7784340 GGGCATGTAG
*
7784350 GGCCTTCACATAGGCGTGTGC
1 GGCCTCCACATAGGCGTGTGC
*
7784371 GGCCTCCACATAGGTGTGT
1 GGCCTCCACATAGGCGTGT
7784390 AGACCACTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.28, G:0.33, T:0.25
Consensus pattern (21 bp):
GGCCTCCACATAGGCGTGTGC
Found at i:7786263 original size:22 final size:23
Alignment explanation
Indices: 7786220--7786263 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7786210 CCAAATATCT
*
7786220 ATCCAACTTAGATTTTTTTTCTA
1 ATCCAACTTAGATTTTTCTTCTA
7786243 ATCCAACTT-G-TTTCTTCTTCT
1 ATCCAACTTAGATTT-TTCTTCT
7786264 TAAGGTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 3 0.16
22 7 0.37
23 9 0.47
ACGTcount: A:0.20, C:0.23, G:0.05, T:0.52
Consensus pattern (23 bp):
ATCCAACTTAGATTTTTCTTCTA
Found at i:7788510 original size:68 final size:70
Alignment explanation
Indices: 7788438--7788635 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
7788428 ACACCCTGTA
* * * *
7788438 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
7788500 ATAAAT
65 ATAAAT
*
7788506 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
7788571 ATAAAT
65 ATAAAT
*
7788577 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
7788636 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:7788549 original size:41 final size:41
Alignment explanation
Indices: 7788504--7788621 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
7788494 TGAAAGATAA
7788504 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
7788545 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
7788575 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
7788616 ATGTAG
1 ATGTAG
7788622 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:7788561 original size:71 final size:71
Alignment explanation
Indices: 7788472--7788635 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
7788462 GAGATGTATC
7788472 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
7788537 AGGACA
66 AGGACA
7788543 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
7788608 AGGACA
66 AGGACA
7788614 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
7788636 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:7796080 original size:68 final size:70
Alignment explanation
Indices: 7796008--7796205 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
7795998 ACACCCTGTA
* * * *
7796008 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
7796070 ATAAAT
65 ATAAAT
*
7796076 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
7796141 ATAAAT
65 ATAAAT
*
7796147 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
7796206 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:7796119 original size:41 final size:41
Alignment explanation
Indices: 7796074--7796191 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
7796064 TGAAAGATAA
7796074 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
7796115 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
7796145 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
7796186 ATGTAG
1 ATGTAG
7796192 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:7796131 original size:71 final size:71
Alignment explanation
Indices: 7796042--7796205 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
7796032 GAGATGTATC
7796042 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
7796107 AGGACA
66 AGGACA
7796113 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
7796178 AGGACA
66 AGGACA
7796184 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
7796206 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:7800943 original size:19 final size:19
Alignment explanation
Indices: 7800919--7800976 Score: 82
Period size: 19 Copynumber: 3.0 Consensus size: 19
7800909 AAGGAAAATG
7800919 GAGCGAAAATCATTCAATA
1 GAGCGAAAATCATTCAATA
*
7800938 GAGCGAAACAT-ATGCAAATA
1 GAGCGAAA-ATCATTC-AATA
7800958 GAGCGAAAATCATTCAATA
1 GAGCGAAAATCATTCAATA
7800977 ATTCAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (19 bp):
GAGCGAAAATCATTCAATA
Found at i:7801128 original size:3 final size:3
Alignment explanation
Indices: 7801122--7801163 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
7801112 ACTAATAATT
7801122 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAGG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA-G AAG AA
7801164 TGGTTTATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7801463 original size:9 final size:9
Alignment explanation
Indices: 7801451--7801487 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
7801441 ATATAGTTTA
*
7801451 TATTCGACT
1 TATTCGAAT
7801460 TATTCGAAT
1 TATTCGAAT
*
7801469 TATTCGAGT
1 TATTCGAAT
7801478 TATTCGAAT
1 TATTCGAAT
7801487 T
1 T
7801488 CGAAAATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7801474 original size:18 final size:18
Alignment explanation
Indices: 7801451--7801487 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7801441 ATATAGTTTA
7801451 TATTCGACTTATTCGAAT
1 TATTCGACTTATTCGAAT
*
7801469 TATTCGAGTTATTCGAAT
1 TATTCGACTTATTCGAAT
7801487 T
1 T
7801488 CGAAAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.46
Consensus pattern (18 bp):
TATTCGACTTATTCGAAT
Found at i:7803939 original size:17 final size:18
Alignment explanation
Indices: 7803905--7803939 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7803895 ACCCTGTGAC
7803905 TACCCGTGTGGACTCACA
1 TACCCGTGTGGACTCACA
*
7803923 TACCCTTGTGG-CTCACA
1 TACCCGTGTGGACTCACA
7803940 CAACCCAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.20, C:0.34, G:0.20, T:0.26
Consensus pattern (18 bp):
TACCCGTGTGGACTCACA
Found at i:7806658 original size:21 final size:22
Alignment explanation
Indices: 7806607--7806660 Score: 65
Period size: 24 Copynumber: 2.4 Consensus size: 22
7806597 CACATGATTT
* *
7806607 TATACATTTTTTAATTCATTAAA
1 TATATATTTTTTAATT-ATCAAA
7806630 TAATATATTTTTTAATT-TCAAA
1 T-ATATATTTTTTAATTATCAAA
7806652 TATATATTT
1 TATATATTT
7806661 GTGCTAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 8 0.29
22 5 0.18
23 1 0.04
24 14 0.50
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (22 bp):
TATATATTTTTTAATTATCAAA
Found at i:7812019 original size:18 final size:18
Alignment explanation
Indices: 7811996--7812037 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
7811986 AAGTTGCGAT
7811996 AATTATAATTTAAATTAC
1 AATTATAATTTAAATTAC
7812014 AATTATAATTTAAATTAC
1 AATTATAATTTAAATTAC
7812032 AATTAT
1 AATTAT
7812038 TAGTGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTATAATTTAAATTAC
Found at i:7816941 original size:16 final size:16
Alignment explanation
Indices: 7816920--7816971 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
7816910 TAACATATCT
7816920 AAACTCAAAAAAATTC
1 AAACTCAAAAAAATTC
* *
7816936 AAACTCGAAAAAACT-
1 AAACTCAAAAAAATTC
*
7816951 AAATTCAAAAAAATTC
1 AAACTCAAAAAAATTC
7816967 AAACT
1 AAACT
7816972 TAAACTGATC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
15 12 0.41
16 17 0.59
ACGTcount: A:0.62, C:0.17, G:0.02, T:0.19
Consensus pattern (16 bp):
AAACTCAAAAAAATTC
Found at i:7822405 original size:16 final size:16
Alignment explanation
Indices: 7822372--7822404 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7822362 GAGTAATTGA
7822372 TTAAAAAAATATATTT
1 TTAAAAAAATATATTT
*
7822388 TTAAAAAACTAT-TTT
1 TTAAAAAAATATATTT
7822403 TT
1 TT
7822405 TTATTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAAAAAATATATTT
Found at i:7823894 original size:21 final size:22
Alignment explanation
Indices: 7823868--7823912 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
7823858 ATTAGTCAGC
* *
7823868 AAGAAATGAATAA-AAATGAGG
1 AAGAAATGAAGAAGAAAAGAGG
7823889 AAGAAATGAAGAAGAAAAGAGG
1 AAGAAATGAAGAAGAAAAGAGG
7823911 AA
1 AA
7823913 ATTTCAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (22 bp):
AAGAAATGAAGAAGAAAAGAGG
Found at i:7823897 original size:11 final size:11
Alignment explanation
Indices: 7823868--7823905 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7823858 ATTAGTCAGC
*
7823868 AAGAAATGAAT
1 AAGAAATGAAG
*
7823879 AA-AAATGAGG
1 AAGAAATGAAG
7823889 AAGAAATGAAG
1 AAGAAATGAAG
7823900 AAGAAA
1 AAGAAA
7823906 AGAGGAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.66, C:0.00, G:0.24, T:0.11
Consensus pattern (11 bp):
AAGAAATGAAG
Found at i:7824026 original size:3 final size:3
Alignment explanation
Indices: 7824020--7824055 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
7824010 AGTGGTGGTT
7824020 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
7824056 AATATTGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7834016 original size:2 final size:2
Alignment explanation
Indices: 7834011--7834036 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7834001 TAAGAAGCTA
7834011 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7834037 GAAATTTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7835855 original size:23 final size:24
Alignment explanation
Indices: 7835825--7835879 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
7835815 TCCAACTTAA
7835825 ATTTAAAT-TAAAAATAAAAAATT
1 ATTTAAATCTAAAAATAAAAAATT
** *
7835848 ATTTAAATCTAATTATAAAATATT
1 ATTTAAATCTAAAAATAAAAAATT
7835872 ATTATAAA
1 ATT-TAAA
7835880 AATATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 8 0.30
24 15 0.56
25 4 0.15
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (24 bp):
ATTTAAATCTAAAAATAAAAAATT
Found at i:7836878 original size:25 final size:24
Alignment explanation
Indices: 7836845--7836892 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
7836835 ACCTTTTTTA
*
7836845 AAAACCAAACACTGATTCCAACTTT
1 AAAACCAAACAATGATT-CAACTTT
*
7836870 AAAATCAAACAATGATTCAACTT
1 AAAACCAAACAATGATTCAACTT
7836893 ATGAATAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.48, C:0.23, G:0.04, T:0.25
Consensus pattern (24 bp):
AAAACCAAACAATGATTCAACTTT
Found at i:7842675 original size:21 final size:20
Alignment explanation
Indices: 7842639--7842677 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7842629 TGTCAATGAC
7842639 CAAAAGTTCATGCAAACAGA
1 CAAAAGTTCATGCAAACAGA
7842659 CAAAATGTTC-TGACAAACA
1 CAAAA-GTTCATG-CAAACA
7842678 AACGTATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.49, C:0.21, G:0.13, T:0.18
Consensus pattern (20 bp):
CAAAAGTTCATGCAAACAGA
Found at i:7847324 original size:25 final size:25
Alignment explanation
Indices: 7847296--7847348 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
7847286 AGTTTTTAGT
*
7847296 ATATACTAACTAGAGTATTTTCACA
1 ATATACTAACTAGAGTAGTTTCACA
* * *
7847321 ATATACTACCTATAGTAGTTTCAGA
1 ATATACTAACTAGAGTAGTTTCACA
7847346 ATA
1 ATA
7847349 GCATATCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (25 bp):
ATATACTAACTAGAGTAGTTTCACA
Found at i:7855160 original size:68 final size:68
Alignment explanation
Indices: 7854993--7855168 Score: 159
Period size: 68 Copynumber: 2.6 Consensus size: 68
7854983 TAGTACCACT
* * * *
7854993 CATGCGACCTAGCT-GAT-T-TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAAT
*
7855055 CACT
65 CACA
* * *
7855059 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGT
1 CATGCGACCTAGCTACATATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGA
7855121 ATCACA
63 ATCACA
*
7855127 CATGTGACCTAGCTACTATATAGTATCTCGTAGC-CTTCTTGT
1 CATGCGACCTAGCTAC-ATATA-TATCTCGTAGCTC-TCTTGT
7855169 ACACATGATG
Statistics
Matches: 91, Mismatches: 10, Indels: 16
0.78 0.09 0.14
Matches are distributed among these distances:
66 14 0.15
67 3 0.03
68 34 0.37
69 8 0.09
70 6 0.07
71 26 0.29
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCTACATATATATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATC
ACA
Found at i:7856557 original size:25 final size:26
Alignment explanation
Indices: 7856527--7856583 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 26
7856517 TTAACTACAG
*
7856527 TTTTCAGTA-TATACTAACTAGAGTA
1 TTTTCAGCAGTATACTAACTAGAGTA
* *
7856552 TTTTCA-CAGTATACTACCTATAGTA
1 TTTTCAGCAGTATACTAACTAGAGTA
*
7856577 GTTTCAG
1 TTTTCAG
7856584 AATAGCATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (26 bp):
TTTTCAGCAGTATACTAACTAGAGTA
Found at i:7860629 original size:41 final size:40
Alignment explanation
Indices: 7860570--7860654 Score: 107
Period size: 41 Copynumber: 2.1 Consensus size: 40
7860560 CATTTCCAGC
*
7860570 TGGAAGCTCTTTTACCACATTAACTGAAAAAGCTTCCACT
1 TGGAAGCTCTTTTACCACATCAACTGAAAAAGCTTCCACT
* ** * *
7860610 TGGAAGCTCTTTCTGCCACATCAGTTGAAAAAGCTTTCAGT
1 TGGAAGCTCTTT-TACCACATCAACTGAAAAAGCTTCCACT
7860651 TGGA
1 TGGA
7860655 GGCATTTTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
40 12 0.32
41 26 0.68
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (40 bp):
TGGAAGCTCTTTTACCACATCAACTGAAAAAGCTTCCACT
Found at i:7863055 original size:19 final size:22
Alignment explanation
Indices: 7863016--7863055 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
7863006 AGAAACCCAA
7863016 CCATATCCAACCGTATACACCC
1 CCATATCCAACCGTATACACCC
7863038 CCATA-CCAACC-T-TACACC
1 CCATATCCAACCGTATACACC
7863056 GTGTGGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.47, G:0.03, T:0.17
Consensus pattern (22 bp):
CCATATCCAACCGTATACACCC
Found at i:7863154 original size:27 final size:26
Alignment explanation
Indices: 7863117--7863257 Score: 149
Period size: 27 Copynumber: 5.3 Consensus size: 26
7863107 AGCATGGCTG
* * *
7863117 CCAGAACAGATAATATGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
7863143 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
7863171 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
7863198 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
7863225 CCAG-ATAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
7863251 CTAGAAC
1 CCAGAAC
7863258 GTTTCCTCCA
Statistics
Matches: 101, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
26 27 0.27
27 58 0.57
28 16 0.16
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:7863176 original size:54 final size:54
Alignment explanation
Indices: 7863117--7863229 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
7863107 AGCATGGCTG
*
7863117 CCAGAACAGATA-ATATGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATATGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
7863171 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
7863225 CCAGA
1 CCAGA
7863230 TAGATATTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:7864907 original size:26 final size:26
Alignment explanation
Indices: 7864869--7864978 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
7864859 CATGAAATTC
*
7864869 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
7864895 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
7864921 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
* **
7864947 TTATCATTGAACATTTACCTAACATA
1 TTATCATGGAACATTTACCTAACCCA
7864973 TTATCA
1 TTATCA
7864979 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:7867931 original size:46 final size:44
Alignment explanation
Indices: 7867867--7867981 Score: 131
Period size: 44 Copynumber: 2.6 Consensus size: 44
7867857 ACAGGACAGA
* *
7867867 ACAGAAATGAGACATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGACATGTAAGTCCATATT--AAATATGGCATTGGAG
* * *
7867913 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGACATGTAAGTCCATATTAAATATGGCATTGGAG
* * **
7867957 ATAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGACATGTAAGTCCAT
7867982 GTCAAAGACA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 34 0.58
46 25 0.42
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.29
Consensus pattern (44 bp):
ACAGGAATGAGACATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:7867973 original size:44 final size:45
Alignment explanation
Indices: 7867879--7868000 Score: 129
Period size: 44 Copynumber: 2.7 Consensus size: 45
7867869 AGAAATGAGA
* * *
7867879 CATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTGAGC
1 CATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAATAAGC
* * **
7867925 CATGTAAGTCCATATT-ATATATGGCATTGGAGATAGGAATAATT
1 CATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAGC
* * *
7867969 CATGTAAGTCCATGTCAAAGACATGGCATTGG
1 CATGTAAGTCCATATTAAA-ATATGGCATTGG
7868001 CAGGATATTG
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 35 0.56
45 1 0.02
46 27 0.43
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.30
Consensus pattern (45 bp):
CATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAAGC
Found at i:7877946 original size:11 final size:11
Alignment explanation
Indices: 7877930--7877954 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7877920 ATATCTAGAA
7877930 TTCTCTTCATT
1 TTCTCTTCATT
7877941 TTCTCTTCATT
1 TTCTCTTCATT
7877952 TTC
1 TTC
7877955 ATCAGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:7880901 original size:6 final size:6
Alignment explanation
Indices: 7880890--7880914 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7880880 CACAATACAG
7880890 TAATGA TAATGA TAATGA TAATGA T
1 TAATGA TAATGA TAATGA TAATGA T
7880915 TGAATCTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (6 bp):
TAATGA
Found at i:7883032 original size:30 final size:30
Alignment explanation
Indices: 7882983--7883040 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
7882973 GTTCAACCAC
* *
7882983 TTAAATATAACTTTCAAATAGTTTAGTGAA
1 TTAAATAAAACTTTCAAATAGTTCAGTGAA
7883013 TTAAATGAAAACTTT-AAATAGTTCAGTG
1 TTAAAT-AAAACTTTCAAATAGTTCAGTG
7883041 GCCATTTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 18 0.72
31 7 0.28
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.38
Consensus pattern (30 bp):
TTAAATAAAACTTTCAAATAGTTCAGTGAA
Found at i:7883129 original size:3 final size:3
Alignment explanation
Indices: 7883121--7883165 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
7883111 TAGGTTACCT
7883121 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7883166 GGGAAATTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7883624 original size:22 final size:22
Alignment explanation
Indices: 7883577--7883624 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7883567 AATGGTAATA
* *
7883577 AAAATAGTGAGAAAACAATAAG
1 AAAATAGTGAGAAAACAACAAC
7883599 AAAATAGT-AGCAAAACAACAAC
1 AAAATAGTGAG-AAAACAACAAC
7883621 AAAA
1 AAAA
7883625 AAGCAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.67, C:0.10, G:0.12, T:0.10
Consensus pattern (22 bp):
AAAATAGTGAGAAAACAACAAC
Found at i:7888422 original size:26 final size:26
Alignment explanation
Indices: 7888386--7888495 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
7888376 TGATACAAAT
7888386 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7888412 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7888438 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7888464 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7888490 TGATAA
1 TGATAA
7888496 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:7890000 original size:26 final size:26
Alignment explanation
Indices: 7889937--7890012 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
7889927 AAAAGTAGCT
* * * *
7889937 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-GTGCA
7889965 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGGTGCA
* *
7889991 AAATTACTGTTACACCCTTAGG
1 AAATTACTGTTATACCCCTAGG
7890013 GTTAATTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGGTGCA
Found at i:7890156 original size:27 final size:27
Alignment explanation
Indices: 7890115--7890227 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
7890105 GAGGAAGCGT
*
7890115 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
7890142 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
7890169 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
7890197 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
7890223 TCTGG
1 TCTGG
7890228 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:7890220 original size:54 final size:54
Alignment explanation
Indices: 7890113--7890227 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
7890103 TGGAGGAAGC
*
7890113 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
7890167 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
7890221 GTTCTGG
1 GTTCTGG
7890228 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:7891694 original size:3 final size:3
Alignment explanation
Indices: 7891688--7891749 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
7891678 TATTATAGTG
7891688 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7891736 TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA
7891750 ATTTATTAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7892971 original size:23 final size:22
Alignment explanation
Indices: 7892944--7893007 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 22
7892934 CTTTGCCGAT
7892944 CAGGCACTTTATGTGTCGTATTC
1 CAGGCAC-TTATGTGTCGTATTC
* *
7892967 CAGGCACCTCATGTGTC--ATTT
1 CAGGCA-CTTATGTGTCGTATTC
*
7892988 CAGACACTTATGTGTCGTAT
1 CAGGCACTTATGTGTCGTAT
7893008 ACTGATCAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
20 9 0.26
21 8 0.24
22 2 0.06
23 14 0.41
24 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (22 bp):
CAGGCACTTATGTGTCGTATTC
Found at i:7895392 original size:39 final size:39
Alignment explanation
Indices: 7895308--7895495 Score: 261
Period size: 39 Copynumber: 4.8 Consensus size: 39
7895298 ATAATTATAT
* * * *
7895308 CCTTGATTGCACTTACATG-CCTTATTTTACTTCGGTAC
1 CCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTAC
*
7895346 CCTTGATCGCACTTATATGCCCCTGTTGTACTTCGGTAC
1 CCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTAC
* * *
7895385 CCCTGATCGCACTTACATGCCGCTGTTGTATTTCGGTAC
1 CCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTAC
* * *
7895424 CCTTGATCGCACTTACGTGCCCTTGTTGTACTTCGGTAT
1 CCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTAC
*
7895463 CCTTGATCGCACTTACATGCTCCTGTTGTACTT
1 CCTTGATCGCACTTACATGCCCCTGTTGTACTT
7895496 TAGTATTCCT
Statistics
Matches: 131, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
38 17 0.13
39 114 0.87
ACGTcount: A:0.15, C:0.29, G:0.18, T:0.38
Consensus pattern (39 bp):
CCTTGATCGCACTTACATGCCCCTGTTGTACTTCGGTAC
Found at i:7895448 original size:20 final size:21
Alignment explanation
Indices: 7895418--7895478 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
7895408 TGTTGTATTT
7895418 CGGTACCCTTGATCGCACTTA
1 CGGTACCCTTGATCGCACTTA
* * *
7895439 C-GTGCCCTTG-TTGTACTT-
1 CGGTACCCTTGATCGCACTTA
*
7895457 CGGTATCCTTGATCGCACTTA
1 CGGTACCCTTGATCGCACTTA
7895478 C
1 C
7895479 ATGCTCCTGT
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
18 1 0.03
19 13 0.43
20 14 0.47
21 2 0.07
ACGTcount: A:0.15, C:0.31, G:0.20, T:0.34
Consensus pattern (21 bp):
CGGTACCCTTGATCGCACTTA
Found at i:7895515 original size:78 final size:78
Alignment explanation
Indices: 7895363--7895515 Score: 186
Period size: 78 Copynumber: 2.0 Consensus size: 78
7895353 CGCACTTATA
*
7895363 TGCCCCTGTTGTACTTCGGTACCCCTGATCGCACTTACATGCCGCTGTTGTATTTCGGTACCCTT
1 TGCCCCTGTTGTACTTCGGTACCCCTGATCGCACTTACATGCCGCTGTTGTATTTCAGTACCCTT
* **
7895428 GATCGCACTTACG
66 AATAACACTTACG
* * * *
7895441 TGCCCTTGTTGTACTTCGGTATCCTTGATCGCACTTACATGCTC-CTGTTGTACTTT-AGTATTC
1 TGCCCCTGTTGTACTTCGGTACCCCTGATCGCACTTACATGC-CGCTGTTGTA-TTTCAGTA-CC
7895504 C-TAATAACACTT
63 CTTAATAACACTT
7895516 TTAAGTCGTG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 58 0.91
79 6 0.09
ACGTcount: A:0.16, C:0.29, G:0.18, T:0.37
Consensus pattern (78 bp):
TGCCCCTGTTGTACTTCGGTACCCCTGATCGCACTTACATGCCGCTGTTGTATTTCAGTACCCTT
AATAACACTTACG
Found at i:7899158 original size:18 final size:18
Alignment explanation
Indices: 7899135--7899177 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
7899125 ACCGACAACT
7899135 TAACAAAGTGAAAATAAA
1 TAACAAAGTGAAAATAAA
7899153 TAACAAAGTGAAAATAAA
1 TAACAAAGTGAAAATAAA
*
7899171 GAACAAA
1 TAACAAA
7899178 TATTCATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.67, C:0.07, G:0.12, T:0.14
Consensus pattern (18 bp):
TAACAAAGTGAAAATAAA
Found at i:7902925 original size:39 final size:39
Alignment explanation
Indices: 7902904--7903073 Score: 225
Period size: 39 Copynumber: 4.4 Consensus size: 39
7902894 CAAGCCTTTA
*
7902904 TTGTACTTCGGTACCCTTGATCGCATTTACGTGCCCCTG
1 TTGTACTTCGGTACCCTTGATCGCACTTACGTGCCCCTG
* * *
7902943 TTGTACTTGGGTA-CTTCTGATCACACTTACGTGCCCCTG
1 TTGTACTTCGGTACCCT-TGATCGCACTTACGTGCCCCTG
* * *
7902982 TTGTACTCCGGTACCCCTGCTCGCACTTACGTGCCCCTG
1 TTGTACTTCGGTACCCTTGATCGCACTTACGTGCCCCTG
* * * *
7903021 TTGTACTTCGGTATCCTTGATTGCACTTACGTGCCCTTA
1 TTGTACTTCGGTACCCTTGATCGCACTTACGTGCCCCTG
7903060 TTGTACTTCGGTAC
1 TTGTACTTCGGTAC
7903074 TTCTGATAGC
Statistics
Matches: 111, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
38 2 0.02
39 108 0.97
40 1 0.01
ACGTcount: A:0.14, C:0.31, G:0.20, T:0.36
Consensus pattern (39 bp):
TTGTACTTCGGTACCCTTGATCGCACTTACGTGCCCCTG
Found at i:7903012 original size:78 final size:77
Alignment explanation
Indices: 7902876--7903087 Score: 253
Period size: 78 Copynumber: 2.7 Consensus size: 77
7902866 TATATAATTA
** * * *
7902876 TATCACTGATCACACTTACAAGCCTTTATTGTACTTCGGTACCCTTGATCGCATTTACGTGCCCC
1 TATC-CTGATCACACTTACGTGCCCTTATTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCC
*
7902941 TGTTGTACTTGGG
65 TGTTGTACTTCGG
* * * * *
7902954 TACTTCTGATCACACTTACGTGCCCCTGTTGTACTCCGGTACCCCTGCTCGCACTTACGTGCCCC
1 TA-TCCTGATCACACTTACGTGCCCTTATTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCC
7903019 TGTTGTACTTCGG
65 TGTTGTACTTCGG
** ** *
7903032 TATCCTTGATTGCACTTACGTGCCCTTATTGTACTTCGGTACTTCTGATAGCACTT
1 TATCC-TGATCACACTTACGTGCCCTTATTGTACTTCGGTACCCCTGATCGCACTT
7903088 TTAAGTTGTG
Statistics
Matches: 111, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
77 2 0.02
78 108 0.97
79 1 0.01
ACGTcount: A:0.17, C:0.30, G:0.18, T:0.36
Consensus pattern (77 bp):
TATCCTGATCACACTTACGTGCCCTTATTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCCT
GTTGTACTTCGG
Found at i:7903067 original size:19 final size:19
Alignment explanation
Indices: 7903006--7903067 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
7902996 CCCTGCTCGC
* *
7903006 ACTTACGTGCCCCTGTTGT
1 ACTTACGTGCCCTTATTGT
** *
7903025 ACTT-CGGTATCCTTGATTGC
1 ACTTAC-GTGCCCTT-ATTGT
7903045 ACTTACGTGCCCTTATTGT
1 ACTTACGTGCCCTTATTGT
7903064 ACTT
1 ACTT
7903068 CGGTACTTCT
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 1 0.03
19 17 0.53
20 13 0.41
21 1 0.03
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (19 bp):
ACTTACGTGCCCTTATTGT
Found at i:7911780 original size:39 final size:40
Alignment explanation
Indices: 7911673--7911783 Score: 111
Period size: 38 Copynumber: 2.8 Consensus size: 40
7911663 GACCTCGAGT
* **
7911673 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAGC
** ** *
7911714 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
7911752 CGATGAGACACTGGGTGTCAACTATTACTTCG
1 CGATGAGACACTGGGTGTCAACTATTACTTCG
7911784 AACTATCCGA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
38 19 0.34
39 19 0.34
40 1 0.02
41 15 0.27
42 2 0.04
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
Found at i:7911794 original size:39 final size:39
Alignment explanation
Indices: 7911673--7911806 Score: 98
Period size: 38 Copynumber: 3.4 Consensus size: 39
7911663 GACCTCGAGT
* * *
7911673 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATA-GATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTC-GA-ACTATC
** ** * *
7911714 CGATGAGGTACTGGGTACCAACT-TTACTTCG-GCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
7911752 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
*
7911791 CGATGAG-GACTGGGTG
1 CGATGAGACACTGGGTG
7911807 CCATATTGGT
Statistics
Matches: 72, Mismatches: 16, Indels: 13
0.71 0.16 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.39
39 22 0.31
40 4 0.06
41 15 0.21
42 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
Found at i:7911803 original size:38 final size:37
Alignment explanation
Indices: 7911714--7911809 Score: 104
Period size: 38 Copynumber: 2.5 Consensus size: 37
7911704 CGGATAGATT
* *
7911714 CGATGAGGTACTGGGTACCAACTTTACTTCGGCTAGGC
1 CGATGAGG-ACTGGGTGCCAACTTTACTTCGACTAGGC
* * *
7911752 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAG-GACTGGGTGCCAACT-TTACTTCG-ACTAGGC
7911791 CGATGAGGACTGGGTGCCA
1 CGATGAGGACTGGGTGCCA
7911810 TATTGGTGTG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
38 29 0.60
39 16 0.33
40 3 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (37 bp):
CGATGAGGACTGGGTGCCAACTTTACTTCGACTAGGC
Done.