Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 290 of 292
Found at i:83855948 original size:31 final size:30
Alignment explanation
Indices: 83855890--83855951 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
83855880 ACACAATAAA
83855890 AACATTTTGAAATTAAAAAATAATTAAATTT
1 AACATTTTGAAATTAAAAAAT-ATTAAATTT
*
83855921 AACATTATTGAAATTAACGAAAT-TTAAATTT
1 AACATT-TTGAAATTAA-AAAATATTAAATTT
83855952 TCGACTTACC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 14 0.50
32 10 0.36
33 4 0.14
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (30 bp):
AACATTTTGAAATTAAAAAATATTAAATTT
Found at i:83866467 original size:21 final size:21
Alignment explanation
Indices: 83866418--83866467 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
83866408 AGTGTTATTA
*
83866418 AGTTAATATTAAAGTTTCGTT
1 AGTTAATTTTAAAGTTTCGTT
** * *
83866439 AGAAAATTTTAACGTTTGGTT
1 AGTTAATTTTAAAGTTTCGTT
83866460 AGTTAATT
1 AGTTAATT
83866468 AATTAAAAAG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.34, C:0.04, G:0.16, T:0.46
Consensus pattern (21 bp):
AGTTAATTTTAAAGTTTCGTT
Found at i:83872863 original size:41 final size:41
Alignment explanation
Indices: 83872806--83872888 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
83872796 GTTAGAAATG
*
83872806 TTTATTTTGGCCCCTTAACAATTGAGAAATAATATTTTAAA
1 TTTATTTTGGCCCCTTAACAACTGAGAAATAATATTTTAAA
83872847 TTTATTTTGGCCCCTTAACAACTGAGAAATAATATTTTAAA
1 TTTATTTTGGCCCCTTAACAACTGAGAAATAATATTTTAAA
83872888 T
1 T
83872889 CATTTTTAGC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (41 bp):
TTTATTTTGGCCCCTTAACAACTGAGAAATAATATTTTAAA
Found at i:83880537 original size:30 final size:30
Alignment explanation
Indices: 83880497--83880553 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
83880487 AATTCACATA
* *
83880497 TTTGGTAAAATGACCATTTTGCCCCTAGAC
1 TTTGGCAAAATGACCATTTTACCCCTAGAC
83880527 TTTGGCAAAATGACCATTTTACCCCTA
1 TTTGGCAAAATGACCATTTTACCCCTA
83880554 TGATCGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTACCCCTAGAC
Found at i:83885649 original size:46 final size:46
Alignment explanation
Indices: 83885582--83885756 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
83885572 TGTAACCCGC
83885582 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
83885628 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
83885678 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
83885721 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
83885757 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.58
47 25 0.23
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:83885701 original size:93 final size:93
Alignment explanation
Indices: 83885590--83885760 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
83885580 GCCCATAAGT
** * *
83885590 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83885655 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
83885683 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
83885748 CGAGTTCGGATGC
66 CGAGCTCGGATGC
83885761 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:83887286 original size:320 final size:320
Alignment explanation
Indices: 83886704--83887343 Score: 1253
Period size: 320 Copynumber: 2.0 Consensus size: 320
83886694 CCAAATTTCA
*
83886704 CCTAATTTTGACTTTTCAACAATTTTATCTCCCATGGCCGGCCATCACACTTTCAATGGCCTAAT
1 CCTAATTTTGACTTTTCAACAATTTTATCTCCCATGGCCGGCCATCACACTTTAAATGGCCTAAT
83886769 TTCACTTTAAATACCCCCAATTTAAGATACAAGGCAATTTAACACCTTTAGGTATTAAAACACAA
66 TTCACTTTAAATACCCCCAATTTAAGATACAAGGCAATTTAACACCTTTAGGTATTAAAACACAA
*
83886834 CTTTTACCTTTTACGCGATTTAGTCCTTTTTCGAAATTGGACTAGAAATTGCTAAAATTAACTTA
131 CTTTTACCTTTTACGCGATTTAGTCCTTTTTCAAAATTGGACTAGAAATTGCTAAAATTAACTTA
83886899 CCAAAATTTACATGCACTTATAAAATTATATTATAACACATAAAATAATACTAAAAAAATTTTCT
196 CCAAAATTTACATGCACTTATAAAATTATATTATAACACATAAAATAATACTAAAAAAATTTTCT
83886964 CTAGCCTCGAAATAGTGGTCCCGAAACCACTATTTCGACTAGGCCCAAAATCGGGCTGTT
261 CTAGCCTCGAAATAGTGGTCCCGAAACCACTATTTCGACTAGGCCCAAAATCGGGCTGTT
*
83887024 CCTAATTTTGACTTTTCAACAATTTTGTCTCCCATGGCCGGCCATCACACTTTAAATGGCCTAAT
1 CCTAATTTTGACTTTTCAACAATTTTATCTCCCATGGCCGGCCATCACACTTTAAATGGCCTAAT
83887089 TTCACTTTAAATACCCCCAATTTAAGATACAAGGCAATTTAACACCTTTAGGTATTAAAACACAA
66 TTCACTTTAAATACCCCCAATTTAAGATACAAGGCAATTTAACACCTTTAGGTATTAAAACACAA
83887154 CTTTTACCTTTTACGCGATTTAGTCCTTTTTCAAAATTGGACTAGAAATTGCTAAAATTAACTTA
131 CTTTTACCTTTTACGCGATTTAGTCCTTTTTCAAAATTGGACTAGAAATTGCTAAAATTAACTTA
83887219 CCAAAATTTACATGCACTTATAAAATTATATTATAACACATAAAATAATACTAAAAAAATTTTCT
196 CCAAAATTTACATGCACTTATAAAATTATATTATAACACATAAAATAATACTAAAAAAATTTTCT
83887284 CTAGCCTCGAAATAGTGGTCCCGAAACCACTATTTCGACTAGGCCCAAAATCGGGCTGTT
261 CTAGCCTCGAAATAGTGGTCCCGAAACCACTATTTCGACTAGGCCCAAAATCGGGCTGTT
83887344 ACAGATTAGG
Statistics
Matches: 317, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
320 317 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.33
Consensus pattern (320 bp):
CCTAATTTTGACTTTTCAACAATTTTATCTCCCATGGCCGGCCATCACACTTTAAATGGCCTAAT
TTCACTTTAAATACCCCCAATTTAAGATACAAGGCAATTTAACACCTTTAGGTATTAAAACACAA
CTTTTACCTTTTACGCGATTTAGTCCTTTTTCAAAATTGGACTAGAAATTGCTAAAATTAACTTA
CCAAAATTTACATGCACTTATAAAATTATATTATAACACATAAAATAATACTAAAAAAATTTTCT
CTAGCCTCGAAATAGTGGTCCCGAAACCACTATTTCGACTAGGCCCAAAATCGGGCTGTT
Found at i:83887526 original size:5 final size:5
Alignment explanation
Indices: 83887512--83887544 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
83887502 TTTGTGTGCT
83887512 TTTTA TTTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TT
83887545 CTCAAATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:83902437 original size:40 final size:40
Alignment explanation
Indices: 83902343--83902443 Score: 152
Period size: 40 Copynumber: 2.5 Consensus size: 40
83902333 TGTTATACTC
*
83902343 TCTGTCTGGAGTGTTTCGGTTGGATTAGCTCTTATGAGCT
1 TCTGTCTGGAGTGTTTCAGTTGGATTAGCTCTTATGAGCT
* *
83902383 TCTGTCCGGCGTGTTTCAGTTGGATTAGCTCTTATGAGCT
1 TCTGTCTGGAGTGTTTCAGTTGGATTAGCTCTTATGAGCT
83902423 TCTGTCT--AGTGTGTTCAGTTG
1 TCTGTCTGGAGTGT-TTCAGTTG
83902444 ATCTGACTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
38 4 0.07
39 8 0.15
40 43 0.78
ACGTcount: A:0.12, C:0.17, G:0.29, T:0.43
Consensus pattern (40 bp):
TCTGTCTGGAGTGTTTCAGTTGGATTAGCTCTTATGAGCT
Found at i:83905788 original size:12 final size:12
Alignment explanation
Indices: 83905771--83905795 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83905761 TACACATGCC
83905771 ATTGTTATTGAA
1 ATTGTTATTGAA
83905783 ATTGTTATTGAA
1 ATTGTTATTGAA
83905795 A
1 A
83905796 AGCATGATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (12 bp):
ATTGTTATTGAA
Found at i:83906640 original size:29 final size:29
Alignment explanation
Indices: 83906608--83906667 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
83906598 AAAAAACAAA
83906608 AAGCAAACAAGTTTACCCAAAAATGCCAC
1 AAGCAAACAAGTTTACCCAAAAATGCCAC
83906637 AAGCAAACAAGTTTACCCAAAAATGCCAC
1 AAGCAAACAAGTTTACCCAAAAATGCCAC
83906666 AA
1 AA
83906668 CACATATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.50, C:0.27, G:0.10, T:0.13
Consensus pattern (29 bp):
AAGCAAACAAGTTTACCCAAAAATGCCAC
Found at i:83907080 original size:242 final size:242
Alignment explanation
Indices: 83906655--83907144 Score: 937
Period size: 242 Copynumber: 2.0 Consensus size: 242
83906645 AAGTTTACCC
83906655 AAAAATGCCACAACACATATTAAATTTAGAACCTTAATATTAACTCGACTTAAAATCTGATGTCT
1 AAAAATGCCACAACACATATTAAATTTAGAACCTTAATATTAACTCGACTTAAAATCTGATGTCT
83906720 TTTATAAATATATGACAATTAATCTAAGTTTTCTAAAAATCAAAAAAATAAATGTTAAGGGAACT
66 TTTATAAATATATGACAATTAATCTAAGTTTTCTAAAAATCAAAAAAATAAATGTTAAGGGAACT
83906785 GAATGACTTTATTAGGCCATTTCAGTCGCCAATGTAACTTTCAATATCTAATCATAATGTTTGGA
131 GAATGACTTTATTAGGCCATTTCAGTCGCCAATGTAACTTTCAATATCTAATCATAATGTTTGGA
83906850 TCGAGTTAGGGAGGATATCATTGCGGTTGAAAATTTGAAGCAATTGG
196 TCGAGTTAGGGAGGATATCATTGCGGTTGAAAATTTGAAGCAATTGG
*
83906897 AAAAATGCCACAACACATATTAAATTTAGAACCTTAATATTAATTCGACTTAAAATCTGATGTCT
1 AAAAATGCCACAACACATATTAAATTTAGAACCTTAATATTAACTCGACTTAAAATCTGATGTCT
*
83906962 TTTATAAATATATGACAATTAATTTAAGTTTTCTAAAAATCAAAAAAATAAATGTTACA-GGAAC
66 TTTATAAATATATGACAATTAATCTAAGTTTTCTAAAAATCAAAAAAATAAATGTTA-AGGGAAC
*
83907026 TGAATGACTTTATTAGGCCATTTCGGTCGCCAATGTAACTTTCAATATCTAATCATAATGTTTGG
130 TGAATGACTTTATTAGGCCATTTCAGTCGCCAATGTAACTTTCAATATCTAATCATAATGTTTGG
83907091 ATCGAGTTAGGGAGGATATCATTGCGGTTGAAAATTTGAAGCAATTGG
195 ATCGAGTTAGGGAGGATATCATTGCGGTTGAAAATTTGAAGCAATTGG
83907139 AAAAAT
1 AAAAAT
83907145 AAATATTACT
Statistics
Matches: 244, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
242 243 1.00
243 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (242 bp):
AAAAATGCCACAACACATATTAAATTTAGAACCTTAATATTAACTCGACTTAAAATCTGATGTCT
TTTATAAATATATGACAATTAATCTAAGTTTTCTAAAAATCAAAAAAATAAATGTTAAGGGAACT
GAATGACTTTATTAGGCCATTTCAGTCGCCAATGTAACTTTCAATATCTAATCATAATGTTTGGA
TCGAGTTAGGGAGGATATCATTGCGGTTGAAAATTTGAAGCAATTGG
Found at i:83911403 original size:13 final size:13
Alignment explanation
Indices: 83911385--83911412 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
83911375 TAATGAACCT
83911385 TATTTTTTATATA
1 TATTTTTTATATA
83911398 TATTTTTTATATA
1 TATTTTTTATATA
83911411 TA
1 TA
83911413 GACTTAAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATTTTTTATATA
Found at i:83926511 original size:16 final size:16
Alignment explanation
Indices: 83926473--83926514 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
83926463 GTATTATTAT
83926473 TATT-ATTATTAATTTA
1 TATTAATTA-TAATTTA
*
83926489 T-TAAATTATAATTTA
1 TATTAATTATAATTTA
83926504 TATTAATTATA
1 TATTAATTATA
83926515 TTATGAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTAATTATAATTTA
Found at i:83927737 original size:21 final size:21
Alignment explanation
Indices: 83927713--83927775 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
83927703 GTGTTGTATT
83927713 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
*
83927734 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCACCTCGTGTGTCGTA
* **
83927755 TCAAGCA-CTTATGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
83927775 T
1 T
83927776 ACTGATTAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 11 0.30
21 26 0.70
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.33
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCGTA
Found at i:83928233 original size:26 final size:26
Alignment explanation
Indices: 83928197--83928248 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
83928187 TGAGTAAGGA
83928197 ATATTCAGCACACGGTTGTTTCTGTG
1 ATATTCAGCACACGGTTGTTTCTGTG
*
83928223 ATATTTAGCACACGGTTGTTTCTGTG
1 ATATTCAGCACACGGTTGTTTCTGTG
83928249 CGCAGGTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATATTCAGCACACGGTTGTTTCTGTG
Found at i:83930877 original size:21 final size:21
Alignment explanation
Indices: 83930829--83930880 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
83930819 GGCACATAAA
*
83930829 GTGCCTAAAACGACACACGAG
1 GTGCCTGAAACGACACACGAG
* *
83930850 GTGCCTGATACGACACAGGAG
1 GTGCCTGAAACGACACACGAG
83930871 GTGCCTGAAA
1 GTGCCTGAAA
83930881 TACAACACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.29, T:0.13
Consensus pattern (21 bp):
GTGCCTGAAACGACACACGAG
Found at i:83930888 original size:23 final size:23
Alignment explanation
Indices: 83930829--83930889 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 23
83930819 GGCACATAAA
83930829 GTGCCT-AAA-ACGACACACGAG
1 GTGCCTGAAATACGACACACGAG
*
83930850 GTGCCTG--ATACGACACAGGAG
1 GTGCCTGAAATACGACACACGAG
*
83930871 GTGCCTGAAATACAACACA
1 GTGCCTGAAATACGACACA
83930890 TAAAGTGCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 1 0.03
21 24 0.71
23 9 0.26
ACGTcount: A:0.36, C:0.26, G:0.25, T:0.13
Consensus pattern (23 bp):
GTGCCTGAAATACGACACACGAG
Found at i:83930897 original size:23 final size:23
Alignment explanation
Indices: 83930816--83930901 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 23
83930806 CTGATCAGAG
*
83930816 TACGGCACATAAAGTGCCT-AAA
1 TACGACACATAAAGTGCCTGAAA
** *
83930838 -ACGACACACGAGGTGCCTG--A
1 TACGACACATAAAGTGCCTGAAA
** *
83930858 TACGACACAGGAGGTGCCTGAAA
1 TACGACACATAAAGTGCCTGAAA
*
83930881 TACAACACATAAAGTGCCTGA
1 TACGACACATAAAGTGCCTGA
83930902 TCGATAAAGC
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
20 1 0.02
21 32 0.63
23 18 0.35
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.15
Consensus pattern (23 bp):
TACGACACATAAAGTGCCTGAAA
Found at i:83931300 original size:15 final size:15
Alignment explanation
Indices: 83931274--83931330 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
83931264 CATATATATT
83931274 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
83931288 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
83931303 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
83931318 ATATAAATTCAAT
1 ATATAATTTCAAT
83931331 AAATTCATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.15
15 33 0.85
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:83932613 original size:5 final size:5
Alignment explanation
Indices: 83932600--83932631 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
83932590 TTCTTTAGTT
83932600 TATATA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA T
83932632 TAAAACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:83932667 original size:8 final size:8
Alignment explanation
Indices: 83932654--83932682 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
83932644 TATCTTTATT
83932654 ATATAATA
1 ATATAATA
83932662 ATATAATA
1 ATATAATA
83932670 ATATAATA
1 ATATAATA
83932678 ATATA
1 ATATA
83932683 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:83933354 original size:7 final size:7
Alignment explanation
Indices: 83933342--83933424 Score: 53
Period size: 7 Copynumber: 11.0 Consensus size: 7
83933332 TATATAAAAA
83933342 TATATAT
1 TATATAT
83933349 TATATAT
1 TATATAT
83933356 TATATTAACT
1 TATA-T-A-T
83933366 TA-ATAT
1 TATATAT
83933372 T-TAAGTAT
1 TAT-A-TAT
83933380 TAATATAT
1 T-ATATAT
*
83933388 AATATAT
1 TATATAT
83933395 TATATTAT
1 TATA-TAT
*
83933403 TATATAA
1 TATATAT
83933410 TATAATAT
1 TAT-ATAT
*
83933418 AATATAT
1 TATATAT
83933425 AAAACATAAG
Statistics
Matches: 61, Mismatches: 5, Indels: 20
0.71 0.06 0.23
Matches are distributed among these distances:
6 2 0.03
7 31 0.51
8 21 0.34
9 3 0.05
10 4 0.07
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (7 bp):
TATATAT
Found at i:83933398 original size:5 final size:5
Alignment explanation
Indices: 83933384--83933423 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
83933374 AAGTATTAAT
* * *
83933384 ATATA ATATA TTATA TTATT ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
83933424 TAAAACATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (5 bp):
ATATA
Found at i:83935443 original size:27 final size:26
Alignment explanation
Indices: 83935408--83935519 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
83935398 AGCATGGCTG
* *
83935408 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
83935434 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
83935462 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
83935489 CCAGATCAGATGATTGTGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAGAGCCA
83935516 CCAG
1 CCAG
83935520 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.07
27 53 0.71
28 17 0.23
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:83935472 original size:54 final size:54
Alignment explanation
Indices: 83935408--83935519 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
83935398 AGCATGGCTG
*
83935408 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * * *
83935462 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATGATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
83935516 CCAG
1 CCAG
83935520 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:83936921 original size:24 final size:24
Alignment explanation
Indices: 83936851--83936921 Score: 142
Period size: 24 Copynumber: 3.0 Consensus size: 24
83936841 CTAGATTTCC
83936851 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
83936875 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
83936899 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
83936922 CTCCTGACAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.28, C:0.38, G:0.00, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:83937443 original size:22 final size:22
Alignment explanation
Indices: 83937415--83937472 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
83937405 TAGCATGTTA
83937415 AGTGCTCTCTGTTTAGCACATCT
1 AGTGCTCTCTGTTTAGCAC-TCT
* *
83937438 -GTGCTCTCTGTATAGCACTTT
1 AGTGCTCTCTGTTTAGCACTCT
83937459 AGTGCTCTCTGTTT
1 AGTGCTCTCTGTTT
83937473 GTTTGTGCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 2 0.06
22 29 0.94
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (22 bp):
AGTGCTCTCTGTTTAGCACTCT
Found at i:83939612 original size:65 final size:65
Alignment explanation
Indices: 83939503--83939632 Score: 206
Period size: 65 Copynumber: 2.0 Consensus size: 65
83939493 ATAAGACACC
* * *
83939503 TTAATGCCACTCGACTCTATGTTGATTCTAAAATCTTTCAAGTCTAAAATACTGAAGGAGATGAG
1 TTAATGCCACTCGACTCGATGTTGATTCTAAAACCTTTCAAGTCTAAAATACTCAAGGAGATGAG
* * *
83939568 TTAATGCCACTCGATTCGATGTTGATTCTGAAACCTTTCGAGTCTAAAATACTCAAGGAGATGAG
1 TTAATGCCACTCGACTCGATGTTGATTCTAAAACCTTTCAAGTCTAAAATACTCAAGGAGATGAG
83939633 GTTCATTCAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 59 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (65 bp):
TTAATGCCACTCGACTCGATGTTGATTCTAAAACCTTTCAAGTCTAAAATACTCAAGGAGATGAG
Found at i:83948550 original size:28 final size:28
Alignment explanation
Indices: 83948497--83948580 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
83948487 CACTTTGTGC
83948497 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
83948526 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
83948554 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
83948581 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:83948592 original size:23 final size:24
Alignment explanation
Indices: 83948501--83948594 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
83948491 TTGTGCTATT
83948501 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
83948528 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
83948558 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
83948581 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
83948595 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:83948852 original size:21 final size:21
Alignment explanation
Indices: 83948804--83948855 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
83948794 ATGTGTCATA
*
83948804 TTTCAGGCACCTTGTGTGTCG
1 TTTCAGGCACCTCGTGTGTCG
***
83948825 CAGCAGGCACCTCGTGTGTCG
1 TTTCAGGCACCTCGTGTGTCG
83948846 TTTCAGGCAC
1 TTTCAGGCAC
83948856 TTATGTGTCG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.13, C:0.29, G:0.29, T:0.29
Consensus pattern (21 bp):
TTTCAGGCACCTCGTGTGTCG
Found at i:83954290 original size:16 final size:16
Alignment explanation
Indices: 83954269--83954303 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
83954259 AAAACCCTAT
83954269 TTTTCCTTTCTT-TTTC
1 TTTTCCTTT-TTCTTTC
83954285 TTTTCCTTTTTCTTTC
1 TTTTCCTTTTTCTTTC
83954301 TTT
1 TTT
83954304 CTTTCCCTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 2 0.11
16 16 0.89
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTCCTTTTTCTTTC
Found at i:83954369 original size:16 final size:17
Alignment explanation
Indices: 83954348--83954396 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
83954338 TTATTTGCTT
83954348 TAATTATTATATTAT-G
1 TAATTATTATATTATAG
* *
83954364 TTATTATTATATTTTAG
1 TAATTATTATATTATAG
83954381 TAATTATTATTATTAT
1 TAATTATTA-TATTAT
83954397 TTACTTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 13 0.48
17 9 0.33
18 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (17 bp):
TAATTATTATATTATAG
Found at i:83956996 original size:7 final size:7
Alignment explanation
Indices: 83956984--83957019 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
83956974 CCCTTTCCTG
83956984 CCCCATT
1 CCCCATT
83956991 CCCCATT
1 CCCCATT
83956998 CCCCATT
1 CCCCATT
83957005 CCCCATT
1 CCCCATT
83957012 CCCCATT
1 CCCCATT
83957019 C
1 C
83957020 AACTCTCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.58, G:0.00, T:0.28
Consensus pattern (7 bp):
CCCCATT
Found at i:83958914 original size:18 final size:18
Alignment explanation
Indices: 83958871--83958904 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83958861 AGCAAAAGAC
*
83958871 CTTTGTGTTCTTTTTTTG
1 CTTTTTGTTCTTTTTTTG
83958889 CTTTTTGTT-TTTTTTT
1 CTTTTTGTTCTTTTTTT
83958905 TTTTTTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.00, C:0.09, G:0.12, T:0.79
Consensus pattern (18 bp):
CTTTTTGTTCTTTTTTTG
Found at i:83960826 original size:17 final size:18
Alignment explanation
Indices: 83960792--83960827 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
83960782 TAAAACTTCG
*
83960792 TTTTAATATTTTTGTACA
1 TTTTAATATTTTTATACA
83960810 TTTTAATA-TTTTATACA
1 TTTTAATATTTTTATACA
83960827 T
1 T
83960828 ATTTTATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTTAATATTTTTATACA
Found at i:83965152 original size:31 final size:33
Alignment explanation
Indices: 83965099--83965162 Score: 89
Period size: 31 Copynumber: 2.0 Consensus size: 33
83965089 AATTCACGGG
*
83965099 TTAATTTTATATTTTAATATAATATAT-TAATA
1 TTAATTTTATATTTTAATATAATACATATAATA
83965131 TTAA-TTTAT-TTTTAATAATAATACATATAATA
1 TTAATTTTATATTTTAAT-ATAATACATATAATA
83965163 CGATAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 7 0.24
31 13 0.45
32 9 0.31
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (33 bp):
TTAATTTTATATTTTAATATAATACATATAATA
Found at i:83968509 original size:14 final size:14
Alignment explanation
Indices: 83968491--83968550 Score: 75
Period size: 14 Copynumber: 4.2 Consensus size: 14
83968481 AGGTAAAATG
83968491 TTTTTCGAAAAATAA
1 TTTTT-GAAAAATAA
83968506 TTTTTGAAAAATAA
1 TTTTTGAAAAATAA
*
83968520 TTTTTAAAAAATAA
1 TTTTTGAAAAATAA
* * *
83968534 TTTCTGGAAAATGA
1 TTTTTGAAAAATAA
83968548 TTT
1 TTT
83968551 ATTTTTTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
14 35 0.88
15 5 0.12
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.43
Consensus pattern (14 bp):
TTTTTGAAAAATAA
Found at i:83968791 original size:18 final size:19
Alignment explanation
Indices: 83968761--83968796 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
83968751 TTGCAATGAT
83968761 TTATTTATAAATAAATAAA
1 TTATTTATAAATAAATAAA
*
83968780 TTATTT-TAAATATATAA
1 TTATTTATAAATAAATAA
83968797 TAATACTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TTATTTATAAATAAATAAA
Found at i:83968993 original size:22 final size:22
Alignment explanation
Indices: 83968976--83969102 Score: 98
Period size: 22 Copynumber: 5.6 Consensus size: 22
83968966 ACATAATTAG
*
83968976 TATTACACCACATGATAACAACAA
1 TATTACACCACATGATAAC--TAA
*
83969000 TATTA-TCCA-AGTGCATAACTAA
1 TATTACACCACA-TG-ATAACTAA
*
83969022 TATTACACCATATGATAACTAA
1 TATTACACCACATGATAACTAA
*
83969044 TATTACACCACATGATAACAACAA
1 TATTACACCACATGATAAC--TAA
** **
83969068 TATT-GTCCATGTGCATAACTAA
1 TATTACACCACATG-ATAACTAA
83969090 TATTACACCACAT
1 TATTACACCACAT
83969103 TAAAAATATC
Statistics
Matches: 81, Mismatches: 14, Indels: 17
0.72 0.12 0.15
Matches are distributed among these distances:
22 40 0.49
23 19 0.23
24 22 0.27
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.28
Consensus pattern (22 bp):
TATTACACCACATGATAACTAA
Found at i:83969005 original size:46 final size:46
Alignment explanation
Indices: 83968952--83969040 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
83968942 AGAAATTAAT
* *
83968952 AATATTATCCAAATACATAATTAGTATTACACCACATGATAACAAC
1 AATATTATCCAAATACATAACTAATATTACACCACATGATAACAAC
* * *
83968998 AATATTATCCAAGTGCATAACTAATATTACACCATATGATAAC
1 AATATTATCCAAATACATAACTAATATTACACCACATGATAAC
83969041 TAATATTACA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.46, C:0.19, G:0.06, T:0.29
Consensus pattern (46 bp):
AATATTATCCAAATACATAACTAATATTACACCACATGATAACAAC
Found at i:83969026 original size:68 final size:68
Alignment explanation
Indices: 83968951--83969099 Score: 219
Period size: 68 Copynumber: 2.2 Consensus size: 68
83968941 TAGAAATTAA
* * *
83968951 TAATATTA-TCCAAATACATAATTAGTATTACACCACATGATAACAACAATATTATCCAAGTGCA
1 TAATATTACACCAAAT-CATAACTAATATTACACCACATGATAACAACAATATTATCCAAGTGCA
83969015 TAAC
65 TAAC
* * * *
83969019 TAATATTACACCATATGATAACTAATATTACACCACATGATAACAACAATATTGTCCATGTGCAT
1 TAATATTACACCAAATCATAACTAATATTACACCACATGATAACAACAATATTATCCAAGTGCAT
83969084 AAC
66 AAC
83969087 TAATATTACACCA
1 TAATATTACACCA
83969100 CATTAAAAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
68 68 0.93
69 5 0.07
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (68 bp):
TAATATTACACCAAATCATAACTAATATTACACCACATGATAACAACAATATTATCCAAGTGCAT
AAC
Found at i:83970098 original size:32 final size:32
Alignment explanation
Indices: 83970052--83970112 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
83970042 TGTCAATTAT
83970052 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
* *
83970084 TTCAATATCTAACAAGCTTGAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
83970113 CAATATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:83970119 original size:27 final size:30
Alignment explanation
Indices: 83970052--83970125 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 30
83970042 TGTCAATTAT
*
83970052 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
*
83970084 TTCAATATCTAACAAGCTTGAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
83970112 -TCAATATCTAACAA
1 TTCAATATCTAACAA
83970126 CATTAAGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.35
28 2 0.05
29 2 0.05
32 22 0.55
ACGTcount: A:0.50, C:0.19, G:0.04, T:0.27
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:83972229 original size:22 final size:20
Alignment explanation
Indices: 83972174--83972232 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 20
83972164 AAAATTGTAA
*
83972174 TTTAACTATA-AAATTAAGAT
1 TTTAA-TATATAAATTAAAAT
*
83972194 TTTAATATTTTAAATTGAAAAT
1 TTTAATA-TATAAATT-AAAAT
83972216 TTGTAATATATAAATTA
1 TT-TAATATATAAATTA
83972233 TGTATAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 2 0.06
20 6 0.19
21 6 0.19
22 13 0.41
23 5 0.16
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (20 bp):
TTTAATATATAAATTAAAAT
Found at i:83974323 original size:20 final size:20
Alignment explanation
Indices: 83974300--83974349 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
83974290 AAATCCAAAT
83974300 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
* *
83974320 TAAAATCCTGAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
83974340 TAAGAATACT
1 TAA-AATACT
83974350 GATGTGGCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:83974803 original size:12 final size:13
Alignment explanation
Indices: 83974788--83974816 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
83974778 TTTATGAATT
83974788 TTTTATTTA-ATA
1 TTTTATTTATATA
83974800 TTTTATTTATATA
1 TTTTATTTATATA
83974813 TTTT
1 TTTT
83974817 TAAAGTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTATTTATATA
Found at i:83975883 original size:31 final size:31
Alignment explanation
Indices: 83975848--83975943 Score: 78
Period size: 31 Copynumber: 3.2 Consensus size: 31
83975838 GCCTGAGAAA
83975848 TTAATATATCATTTCCTATTTAAATTTTGTT
1 TTAATATATCATTTCCTATTTAAATTTTGTT
* * ** * *
83975879 TTAATATTTAATTTAATATATGAGAA------A
1 TTAATATATCATTTCCTAT-TTA-AATTTTGTT
83975906 TTAATATATCATTTCCTATTTAAATTTTGTT
1 TTAATATATCATTTCCTATTTAAATTTTGTT
83975937 TTAATAT
1 TTAATAT
83975944 TTAATTTAAT
Statistics
Matches: 45, Mismatches: 12, Indels: 16
0.62 0.16 0.22
Matches are distributed among these distances:
25 2 0.04
26 2 0.04
27 15 0.33
31 22 0.49
32 2 0.04
33 2 0.04
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.54
Consensus pattern (31 bp):
TTAATATATCATTTCCTATTTAAATTTTGTT
Found at i:83975910 original size:58 final size:58
Alignment explanation
Indices: 83975841--83975961 Score: 242
Period size: 58 Copynumber: 2.1 Consensus size: 58
83975831 CTTCAACGCC
83975841 TGAGAAATTAATATATCATTTCCTATTTAAATTTTGTTTTAATATTTAATTTAATATA
1 TGAGAAATTAATATATCATTTCCTATTTAAATTTTGTTTTAATATTTAATTTAATATA
83975899 TGAGAAATTAATATATCATTTCCTATTTAAATTTTGTTTTAATATTTAATTTAATATA
1 TGAGAAATTAATATATCATTTCCTATTTAAATTTTGTTTTAATATTTAATTTAATATA
83975957 TGAGA
1 TGAGA
83975962 GGTTTTTGTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 63 1.00
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (58 bp):
TGAGAAATTAATATATCATTTCCTATTTAAATTTTGTTTTAATATTTAATTTAATATA
Found at i:83976461 original size:17 final size:17
Alignment explanation
Indices: 83976430--83976462 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
83976420 AATTTTTATG
83976430 ATTTTTATAATTTTCTT
1 ATTTTTATAATTTTCTT
83976447 ATTTTTA-AATATTTCT
1 ATTTTTATAAT-TTTCT
83976463 AAATTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTTTATAATTTTCTT
Found at i:83982332 original size:16 final size:16
Alignment explanation
Indices: 83982307--83982343 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
83982297 TATTTATAAT
83982307 TAAA-TTAAATTCAAA
1 TAAATTTAAATTCAAA
*
83982322 TAAATTTAAATTCGAA
1 TAAATTTAAATTCAAA
83982338 TAAATT
1 TAAATT
83982344 GTCTAACATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (16 bp):
TAAATTTAAATTCAAA
Found at i:83989068 original size:6 final size:6
Alignment explanation
Indices: 83989049--83989082 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
83989039 AGGGAACCAT
*
83989049 AAGAGAA AATAAA AAGAAA AAGAAA AAGAAA AAG
1 AAGA-AA AAGAAA AAGAAA AAGAAA AAGAAA AAG
83989083 GGCACTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 22 0.88
7 3 0.12
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (6 bp):
AAGAAA
Found at i:84000676 original size:3 final size:3
Alignment explanation
Indices: 84000668--84000706 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
84000658 ATGATCACGA
* * *
84000668 CAT CAT CAT CAT CAT CTT CTT CAT CAT CAT CAT CTT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
84000707 ACTGGGTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (3 bp):
CAT
Found at i:84000693 original size:15 final size:15
Alignment explanation
Indices: 84000668--84000706 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
84000658 ATGATCACGA
*
84000668 CATCATCATCATCAT
1 CATCTTCATCATCAT
*
84000683 CTTCTTCATCATCAT
1 CATCTTCATCATCAT
84000698 CATCTTCAT
1 CATCTTCAT
84000707 ACTGGGTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (15 bp):
CATCTTCATCATCAT
Found at i:84000693 original size:18 final size:18
Alignment explanation
Indices: 84000670--84000704 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
84000660 GATCACGACA
84000670 TCATCATCATCATCTTCT
1 TCATCATCATCATCTTCT
84000688 TCATCATCATCATCTTC
1 TCATCATCATCATCTTC
84000705 ATACTGGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.34, G:0.00, T:0.43
Consensus pattern (18 bp):
TCATCATCATCATCTTCT
Found at i:84009310 original size:16 final size:16
Alignment explanation
Indices: 84009289--84009328 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
84009279 TTTAAACCCA
84009289 AAATAATC-TGAATTTG
1 AAATAATCAT-AATTTG
84009305 AAATAATCATAATTTG
1 AAATAATCATAATTTG
84009321 AAATAATC
1 AAATAATC
84009329 CAAACTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.35
Consensus pattern (16 bp):
AAATAATCATAATTTG
Found at i:84029654 original size:20 final size:20
Alignment explanation
Indices: 84029629--84029672 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
84029619 TTTCATTGCT
*
84029629 TTTAATTATTAATGTTAATA
1 TTTAATTATTAACGTTAATA
* *
84029649 TTTAATTGTTAGCGTTAATA
1 TTTAATTATTAACGTTAATA
84029669 TTTA
1 TTTA
84029673 TACATTGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (20 bp):
TTTAATTATTAACGTTAATA
Found at i:84033280 original size:19 final size:20
Alignment explanation
Indices: 84033253--84033294 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
84033243 TCTTTTTGCA
* * *
84033253 TTCATTCATTTGTATTACAT
1 TTCATTCATGTGCATTAAAT
84033273 TTCA-TCATGTGCATTAAAT
1 TTCATTCATGTGCATTAAAT
84033292 TTC
1 TTC
84033295 GCGAAAAGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.26, C:0.17, G:0.07, T:0.50
Consensus pattern (20 bp):
TTCATTCATGTGCATTAAAT
Found at i:84041585 original size:44 final size:45
Alignment explanation
Indices: 84041519--84041678 Score: 149
Period size: 44 Copynumber: 3.7 Consensus size: 45
84041509 AATTTCCAGA
84041519 TCTT-AACCCCTTAAGCAGTAGGGAAACAGATCAAAGACGAAGGG
1 TCTTAAACCCCTTAAGCAGTAGGGAAACAGATCAAAGACGAAGGG
* * * *
84041563 TCTTAAACCCC-TAAGCAATAGGGAAACAGACCAAATTA-G-A-GA
1 TCTTAAACCCCTTAAGCAGTAGGGAAACAGATCAAA-GACGAAGGG
* * * *
84041605 T-TTTATCCCCTTAAGTAGT-GGAGAAACAGAT-AGAAGACAAAGGG
1 TCTTAAACCCCTTAAGCAGTAGG-GAAACAGATCA-AAGACGAAGGG
*
84041649 TCTTAAACCCC-TAAGCAGTAGGGTAACAGA
1 TCTTAAACCCCTTAAGCAGTAGGGAAACAGA
84041679 CCGAATTATA
Statistics
Matches: 90, Mismatches: 16, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
41 11 0.12
42 18 0.20
43 2 0.02
44 43 0.48
45 16 0.18
ACGTcount: A:0.40, C:0.19, G:0.22, T:0.19
Consensus pattern (45 bp):
TCTTAAACCCCTTAAGCAGTAGGGAAACAGATCAAAGACGAAGGG
Found at i:84041740 original size:86 final size:86
Alignment explanation
Indices: 84041483--84041761 Score: 289
Period size: 86 Copynumber: 3.2 Consensus size: 86
84041473 CCATCCTGTC
* * * *
84041483 CCCCTAAGCAGTAGGGTAACAGGCTGAATT-TCCAGATCTTAACCCCTTAAGCAGTAG-GGAAAC
1 CCCCTAAGCAGTAGGGTAACAGACCGAATTAT--AGATCTTATCCCCTTAAGCA-TAGTGGAGAC
*
84041546 AGATCAAAGACGAAGGGTCTTAAA
63 AGATCGAAGACGAAGGGTCTTAAA
* * * * *
84041570 CCCCTAAGCAATAGGGAAACAGACCAAATTAGAGATTTTATCCCCTTAAG--TAGTGGAGAAACA
1 CCCCTAAGCAGTAGGGTAACAGACCGAATTATAGATCTTATCCCCTTAAGCATAGTGGAG--ACA
* *
84041633 GATAGAAGACAAAGGGTCTTAAA
64 GATCGAAGACGAAGGGTCTTAAA
* * *
84041656 CCCCTAAGCAGTAGGGTAACAGACCGAATTATAGATCTTATCTCTTTAAGCATTAGTGGAGATA-
1 CCCCTAAGCAGTAGGGTAACAGACCGAATTATAGATCTTATCCCCTTAAGCA-TAGTGGAGACAG
* ***
84041720 ATCGAATACGAAGAACCTTAAAA
65 ATCGAAGACGAAGGGTCTT-AAA
84041743 CCCCTAAGCAGTAGGGTAA
1 CCCCTAAGCAGTAGGGTAA
84041762 TAGGTTGAAA
Statistics
Matches: 158, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
83 3 0.02
84 3 0.02
86 95 0.60
87 49 0.31
89 8 0.05
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (86 bp):
CCCCTAAGCAGTAGGGTAACAGACCGAATTATAGATCTTATCCCCTTAAGCATAGTGGAGACAGA
TCGAAGACGAAGGGTCTTAAA
Found at i:84041986 original size:44 final size:44
Alignment explanation
Indices: 84041920--84042084 Score: 129
Period size: 44 Copynumber: 3.6 Consensus size: 44
84041910 CAGATCTTGC
* * *
84041920 CTCTCTGGAA-TTGTAGTGGAGCAGATCAAATTAGCGAATCTTAT
1 CTCTCT-GAAGTTGCAGTAGAGCAGATCAAATTAGCAAATCTTAT
* * * *
84041964 CTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA-TAAATCCTAT
1 CTCTCTGAAGTTGCAGTAGAGCAGATCAAA-TTAGCAAATCTTAT
* * *
84042008 AC-CTCTGAAGTTACAGTAGGGTCGGATCAAATCTACCATGGCAAATCTTAT
1 -CTCTCTGAAGTTGCAGTAGAG-CAGATCAAAT-T---A--GCAAATCTTAT
84042059 CTCTCTGAAGTTGCAGTAGAGCAGAT
1 CTCTCTGAAGTTGCAGTAGAGCAGAT
84042085 TAAAGCCATT
Statistics
Matches: 92, Mismatches: 17, Indels: 18
0.72 0.13 0.14
Matches are distributed among these distances:
43 3 0.03
44 47 0.51
45 11 0.12
48 1 0.01
50 5 0.05
51 25 0.27
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
CTCTCTGAAGTTGCAGTAGAGCAGATCAAATTAGCAAATCTTAT
Found at i:84044389 original size:20 final size:20
Alignment explanation
Indices: 84044364--84044407 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
84044354 TTTCATTGCT
*
84044364 TTTAATTATTAATGTTAATA
1 TTTAATTATTAACGTTAATA
* *
84044384 TTTAATTGTTAGCGTTAATA
1 TTTAATTATTAACGTTAATA
84044404 TTTA
1 TTTA
84044408 TACATTGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (20 bp):
TTTAATTATTAACGTTAATA
Found at i:84063384 original size:17 final size:17
Alignment explanation
Indices: 84063335--84063384 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
84063325 CGCGTGACAA
*
84063335 AAAAATTATAAATTTTTT
1 AAAAATTA-AAATTTTAT
* * *
84063353 ATAAATTCAATTTTTAT
1 AAAAATTAAAATTTTAT
84063370 AAAAATTAAAATTTT
1 AAAAATTAAAATTTT
84063385 TCCACGTGTT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
17 19 0.76
18 6 0.24
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
AAAAATTAAAATTTTAT
Found at i:84064546 original size:26 final size:26
Alignment explanation
Indices: 84064517--84064598 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
84064507 TGATACAAAT
*
84064517 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
84064543 TGATAATGGGTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
84064569 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
84064595 TGAT
1 TGAT
84064599 GGGAATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:84081331 original size:12 final size:11
Alignment explanation
Indices: 84081314--84081346 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
84081304 TTAACACTCT
84081314 TATATATATGTA
1 TATATATAT-TA
84081326 TATATATATTA
1 TATATATATTA
84081337 TATA-ATATTA
1 TATATATATTA
84081347 ATAGTTTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 6 0.29
11 6 0.29
12 9 0.43
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (11 bp):
TATATATATTA
Found at i:84084163 original size:19 final size:18
Alignment explanation
Indices: 84084124--84084168 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
84084114 CTTTCTTTCT
*
84084124 TTTGCATTCATTCATGTA
1 TTTGCATTCATTCATGCA
84084142 TTTGCATTGCATTGCAT-CA
1 TTTGCATT-CATT-CATGCA
84084161 TTTGCATT
1 TTTGCATT
84084169 AGACTTCCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 8 0.33
19 13 0.54
20 3 0.12
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (18 bp):
TTTGCATTCATTCATGCA
Found at i:84088990 original size:37 final size:37
Alignment explanation
Indices: 84088932--84089076 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
84088922 GCTCAGATGA
* *
84088932 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACA-
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
84088968 ATATCTCCACACGTAGTCATCGGGTCTTACCTGGACAT
1 A-ATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
84089006 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
84089043 AATCTCCACATGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
84089077 ATATATTTCC
Statistics
Matches: 102, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
36 1 0.01
37 100 0.98
38 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:84089347 original size:48 final size:48
Alignment explanation
Indices: 84089223--84089513 Score: 503
Period size: 48 Copynumber: 6.0 Consensus size: 48
84089213 ACACATCGCC
*
84089223 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
*
84089273 TATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
84089321 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
84089369 TACATATTTCACATTAGCCATTCGGTTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
84089417 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
84089465 TACATACTTCACATTAGCCATTCGGCTTTACCATATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
84089513 T
1 T
84089514 GCATCAATTT
Statistics
Matches: 232, Mismatches: 7, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
48 187 0.81
49 2 0.01
50 43 0.19
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:84092298 original size:66 final size:66
Alignment explanation
Indices: 84092189--84092321 Score: 221
Period size: 66 Copynumber: 2.0 Consensus size: 66
84092179 TTCATATATC
84092189 ATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACA
1 ATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACA
84092254 T
66 T
* * * * *
84092255 ATTCATAACGCATCTAATTAGGAGCATTTGGTTCATTTTGATCATAGCATCCTAATTCTTTGGCA
1 ATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACA
84092320 T
66 T
84092321 A
1 A
84092322 CGCATAAATA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (66 bp):
ATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACA
T
Found at i:84092438 original size:43 final size:44
Alignment explanation
Indices: 84092370--84092453 Score: 143
Period size: 43 Copynumber: 1.9 Consensus size: 44
84092360 CTAGAATCAG
*
84092370 TGAATTCACCAGACCTTAACCCCCTAAGCAGTAGGGTAACAGGT
1 TGAATTCACAAGACCTTAACCCCCTAAGCAGTAGGGTAACAGGT
*
84092414 TGAATTCACAAG-CCTTAACTCCCTAAGCAGTAGGGTAACA
1 TGAATTCACAAGACCTTAACCCCCTAAGCAGTAGGGTAACA
84092454 AGCTGAAGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 27 0.71
44 11 0.29
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21
Consensus pattern (44 bp):
TGAATTCACAAGACCTTAACCCCCTAAGCAGTAGGGTAACAGGT
Found at i:84092907 original size:86 final size:85
Alignment explanation
Indices: 84092817--84093020 Score: 275
Period size: 86 Copynumber: 2.4 Consensus size: 85
84092807 GTTGAATTTC
* *
84092817 CAGATCTTAACCCCCTAAGAAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCTTAAGCA
1 CAGATCTTAACCCCCTAAGCAGTAGGG-AACAGATCGAAGACGAAGGGCCTTAAACCCTTAAGCA
84092882 GTAAGGTAACAGACCAAATTG
65 GTAAGGTAACAGACCAAATTG
* * *
84092903 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGCCTTAAACCCTTAAGCA
1 CAGATCTTAACCCCCTAAGCAGTAG-GGAACAGATCGAAGACGAAGGGCCTTAAACCCTTAAGCA
* * ** *
84092968 GTAGGGTAACAGGCTGAATTT
65 GTAAGGTAACAGACCAAATTG
84092989 CTAGATCTTAA-CCCCTAAGCAGTAGGGTAACA
1 C-AGATCTTAACCCCCTAAGCAGTAGGG-AACA
84093021 AACCAAATTG
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
85 2 0.02
86 90 0.88
87 10 0.10
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (85 bp):
CAGATCTTAACCCCCTAAGCAGTAGGGAACAGATCGAAGACGAAGGGCCTTAAACCCTTAAGCAG
TAAGGTAACAGACCAAATTG
Found at i:84092922 original size:42 final size:41
Alignment explanation
Indices: 84092865--84093054 Score: 114
Period size: 42 Copynumber: 4.5 Consensus size: 41
84092855 AGACGAAGGG
*
84092865 TCTTAAACCCTTAAGCAGTAAGGTAACAGACCAAATTGCAGA
1 TCTT-AACCCCTAAGCAGTAAGGTAACAGACCAAATTGCAGA
* * * * * * *
84092907 TCTTATCTCCCTAAGCAGT-AGTGGAGCAGATCGAAGA-CGAAGGG
1 TCTTAAC-CCCTAAGCAGTAAG-GTAACAGA-CCAA-ATTGCA-GA
* * * * ** *
84092951 CCTTAAACCCTTAAGCAGTAGGGTAACAGGCTGAATTTCTAGA
1 TCTT-AACCCCTAAGCAGTAAGGTAACAGACCAAATTGC-AGA
* * *
84092994 TCTTAACCCCTAAGCAGTAGGGTAACAAACCAAATTGCATA
1 TCTTAACCCCTAAGCAGTAAGGTAACAGACCAAATTGCAGA
*
84093035 TCTTATCTCCCTAAGCAGTA
1 TCTTAAC-CCCTAAGCAGTA
84093055 GTGGAGCAGA
Statistics
Matches: 108, Mismatches: 30, Indels: 20
0.68 0.19 0.13
Matches are distributed among these distances:
41 12 0.11
42 61 0.56
43 11 0.10
44 21 0.19
45 3 0.03
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (41 bp):
TCTTAACCCCTAAGCAGTAAGGTAACAGACCAAATTGCAGA
Found at i:84093026 original size:128 final size:128
Alignment explanation
Indices: 84092865--84093149 Score: 498
Period size: 128 Copynumber: 2.2 Consensus size: 128
84092855 AGACGAAGGG
* * *
84092865 TCTTAAACCCTTAAGCAGTAAGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTT-AACCCCTAAGCAGTAGGGTAACAAACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
84092930 GAGCAGATCGAAGACGAAGGGCCTTAAACCCTTAAGCAGTAGGGTAACAGGCTGAATTTCTAGA
65 GAGCAGATCGAAGACGAAGGGCCTTAAACCCTTAAGCAGTAGGGTAACAGGCTGAATTTCCAGA
*
84092994 TCTTAACCCCTAAGCAGTAGGGTAACAAACCAAATTGCATATCTTATCTCCCTAAGCAGTAGTGG
1 TCTTAACCCCTAAGCAGTAGGGTAACAAACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
*
84093059 AGCAGATCGAAGACGAAGGGCCTTAAACCCTTAAGTAGTAGGGTAACAGGCTGAATTTCCAGA
66 AGCAGATCGAAGACGAAGGGCCTTAAACCCTTAAGCAGTAGGGTAACAGGCTGAATTTCCAGA
84093122 TCTTAACCCCCTAAGCAGTAGGGTAACA
1 TCTTAA-CCCCTAAGCAGTAGGGTAACA
84093150 GACAGAAGAC
Statistics
Matches: 149, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
128 124 0.83
129 25 0.17
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (128 bp):
TCTTAACCCCTAAGCAGTAGGGTAACAAACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGAAGACGAAGGGCCTTAAACCCTTAAGCAGTAGGGTAACAGGCTGAATTTCCAGA
Found at i:84093140 original size:87 final size:87
Alignment explanation
Indices: 84092998--84093200 Score: 250
Period size: 87 Copynumber: 2.3 Consensus size: 87
84092988 TCTAGATCTT
** * * * * * * *
84092998 AACCCCTAAGCAGTAGGGTAACAAAC-CAAATTGCATATCTTATCTCCCTAAGCAGTAGTGG-AG
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTTAACCCCCTAAGCAGTAG-GGTAA
84093061 CAGATC-GAAGACGAAGGGCCTTA
65 CAGA-CAGAAGACGAAGGGCCTTA
* *
84093084 AACCCTTAAGTAGTAGGGTAACAGGCTGAATTTCCAGATCTTAACCCCCTAAGCAGTAGGGTAAC
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTTAACCCCCTAAGCAGTAGGGTAAC
*
84093149 AGACAGAAGACGATGGGCCTTA
66 AGACAGAAGACGAAGGGCCTTA
*
84093171 AACCCCTAAGCAGTAGGGTACCAGGCTGAA
1 AACCCCTAAGCAGTAGGGTAACAGGCTGAA
84093201 AATTACAACT
Statistics
Matches: 99, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
86 25 0.25
87 74 0.75
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (87 bp):
AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTTAACCCCCTAAGCAGTAGGGTAAC
AGACAGAAGACGAAGGGCCTTA
Found at i:84093142 original size:43 final size:43
Alignment explanation
Indices: 84092739--84093150 Score: 153
Period size: 43 Copynumber: 9.6 Consensus size: 43
84092729 GATGGGCTTC
* * ** * * *
84092739 AACCCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTT
* * * *
84092782 AAACCCCTAAACAGTAGGGTAATAGGTTGAATTTCCAGATCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTT
* * * ** * *
84092825 AACCCCCTAAGAAGTAGGGAAACA-GATCGAA-GACGAAGGGTCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGCT-GAATTTC-CA-GATCTT
* * * * * * *
84092869 AAACCCTTAAGCAGTAAGGTAACAGAC-CAAATTGCAGATCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTT
* * * * ** * **
84092911 ATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAA-GACGAAGGGCCTT
1 AACCCCCTAAGCAGTAG-GGTAACAGGCT-GAATTTC-CA-GATCTT
* * *
84092955 AAACCCTTAAGCAGTAGGGTAACAGGCTGAATTTCTAGATCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTT
** * * * *
84092998 AA-CCCCTAAGCAGTAGGGTAACAAAC-CAAATTGCATATCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTT
* * * * ** * **
84093039 ATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAA-GACGAAGGGCCTT
1 AACCCCCTAAGCAGTAG-GGTAACAGGCT-GAATTTC-CA-GATCTT
* * *
84093083 AAACCCTTAAGTAGTAGGGTAACAGGCTGAATTTCCAGATCTT
1 AACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTT
84093126 AACCCCCTAAGCAGTAGGGTAACAG
1 AACCCCCTAAGCAGTAGGGTAACAG
84093151 ACAGAAGACG
Statistics
Matches: 251, Mismatches: 96, Indels: 44
0.64 0.25 0.11
Matches are distributed among these distances:
41 11 0.04
42 60 0.24
43 104 0.41
44 70 0.28
45 6 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (43 bp):
AACCCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTT
Found at i:84093180 original size:44 final size:42
Alignment explanation
Indices: 84092822--84093190 Score: 157
Period size: 44 Copynumber: 8.6 Consensus size: 42
84092812 ATTTCCAGAT
* * * *
84092822 CTTAACCCCCTAAGAAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGA-CGAAGACG-AGGGC
* * * * **
84092866 CTTAAACCCTTAAGCAGTAAGGTAACAGACCAA-ATTGCA-GAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACGAAGA-CG-AGGGC
* *
84092908 CTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGGGC
1 CTTAAAC-CCCTAAGCAGTAG-GGTAACAGA-CGAAGACG-AGGGC
* * ** * **
84092952 CTTAAACCCTTAAGCAGTAGGGTAACAGGCTGAATTTCTA-GAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGAC-GAA-GACGAGGGC
* * * ***
84092995 CTT-AACCCCTAAGCAGTAGGGTAACAAACCAA-ATTGCA-TAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACGAAGA-CG-AGGGC
* *
84093036 CTT-ATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGGGC
1 CTTAAAC-CCCTAAGCAGTAG-GGTAACAGA-CGAAGACG-AGGGC
* * * ** * **
84093080 CTTAAACCCTTAAGTAGTAGGGTAACAGGCTGAATTTCCA-GAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGAC-GAA-GACGAGGGC
*
84093123 CTTAACCCCCTAAGCAGTAGGGTAACAGACAGAAGACGATGGGC
1 CTTAAACCCCTAAGCAGTAGGGTAACAGAC-GAAGACGA-GGGC
84093167 CTTAAACCCCTAAGCAGTAGGGTA
1 CTTAAACCCCTAAGCAGTAGGGTA
84093191 CCAGGCTGAA
Statistics
Matches: 237, Mismatches: 65, Indels: 46
0.68 0.19 0.13
Matches are distributed among these distances:
41 12 0.05
42 64 0.27
43 59 0.25
44 96 0.41
45 6 0.03
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (42 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGACGAAGACGAGGGC
Found at i:84094602 original size:53 final size:53
Alignment explanation
Indices: 84094521--84094671 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
84094511 CTTACACGGT
*
84094521 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATATCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
84094576 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATATCCCAGCTATGGTCTTATACGGAATCACATTA
** *
84094629 TCACATTGCACCGATGCCATATCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATATCCCAGCTATGGTCTTATACGG
84094672 GCACACTTGT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATATCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:84098748 original size:2 final size:2
Alignment explanation
Indices: 84098741--84098778 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
84098731 CGGACAACAA
84098741 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84098779 GTGTGTCTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84098822 original size:14 final size:14
Alignment explanation
Indices: 84098803--84098831 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
84098793 CTGCATTTTG
84098803 TTAAATTCTGGTTT
1 TTAAATTCTGGTTT
84098817 TTAAATTCTGGTTT
1 TTAAATTCTGGTTT
84098831 T
1 T
84098832 GGTGCTCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (14 bp):
TTAAATTCTGGTTT
Found at i:84104405 original size:23 final size:22
Alignment explanation
Indices: 84104369--84104411 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
84104359 AAGAAGAAAA
84104369 AAAAAGAAAGAGAGGAAGAGAG
1 AAAAAGAAAGAGAGGAAGAGAG
* *
84104391 AAAAAGAGAGAAGAGGGAGAG
1 AAAAAGAAAG-AGAGGAAGAG
84104412 GGGAAGGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (22 bp):
AAAAAGAAAGAGAGGAAGAGAG
Found at i:84116137 original size:13 final size:13
Alignment explanation
Indices: 84116119--84116144 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84116109 TAACAACCAA
84116119 GAGAACTATAGTT
1 GAGAACTATAGTT
84116132 GAGAACTATAGTT
1 GAGAACTATAGTT
84116145 TGAGTGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
GAGAACTATAGTT
Found at i:84120075 original size:47 final size:46
Alignment explanation
Indices: 84119924--84120099 Score: 198
Period size: 47 Copynumber: 3.8 Consensus size: 46
84119914 GTAACCCGCC
* * *
84119924 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-GTTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
*
84119969 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCTGATGCCTAGTT-ACAT
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC-AGTTCACAT
* * *
84120019 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTCACAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
*
84120063 CTATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 C-ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84120100 TGTTCAACCG
Statistics
Matches: 111, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
43 3 0.03
44 7 0.06
46 35 0.32
47 55 0.50
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTCACAT
Found at i:84120095 original size:94 final size:93
Alignment explanation
Indices: 84119931--84120101 Score: 270
Period size: 94 Copynumber: 1.8 Consensus size: 93
84119921 GCCCATAAGT
* *
84119931 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
84119996 CGAGTTCTGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
84120024 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCACATCTATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGAC-GTTCACATCCATAAGTGAACTCGGACTCAACTCA
*
84120089 ATGAGTTCGGATG
65 ACGAGTTCGGATG
84120102 TTCAACCGTC
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
93 28 0.40
94 42 0.60
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84120554 original size:30 final size:30
Alignment explanation
Indices: 84120520--84120579 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
84120510 ACTTAATACG
84120520 AACTTTAGAAAAATTAC-CATTTTGCCCCTA
1 AACTTTAGAAAAATTACAC-TTTTGCCCCTA
* * *
84120550 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGAAAAATTACACTTTTGCCCCTA
84120580 GGCTTGAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAGAAAAATTACACTTTTGCCCCTA
Found at i:84130174 original size:20 final size:21
Alignment explanation
Indices: 84130151--84130201 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
84130141 ATTTAACCAT
*
84130151 CAATTCAATTAAA-TTTTAGC
1 CAATTCAATCAAATTTTTAGC
* *
84130171 CAATTCAACCAAATTTTTAGT
1 CAATTCAATCAAATTTTTAGC
84130192 CAATTCAATC
1 CAATTCAATC
84130202 GGTTCTCGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (21 bp):
CAATTCAATCAAATTTTTAGC
Found at i:84133099 original size:19 final size:19
Alignment explanation
Indices: 84133075--84133117 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
84133065 AATTTACTAA
84133075 TAACTGGGTTATCATTTTG
1 TAACTGGGTTATCATTTTG
84133094 TAACTGGGTTATCATTTTG
1 TAACTGGGTTATCATTTTG
84133113 TAACT
1 TAACT
84133118 TTTTATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.47
Consensus pattern (19 bp):
TAACTGGGTTATCATTTTG
Found at i:84133648 original size:22 final size:22
Alignment explanation
Indices: 84133623--84133666 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
84133613 CAATTAAAAT
84133623 ATCAACAATAATTTTTACACTA
1 ATCAACAATAATTTTTACACTA
84133645 ATCAACAATAATTTTTACACTA
1 ATCAACAATAATTTTTACACTA
84133667 TGTAAATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (22 bp):
ATCAACAATAATTTTTACACTA
Found at i:84134848 original size:14 final size:16
Alignment explanation
Indices: 84134817--84134848 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
84134807 AGAACTTTGA
84134817 TCTTTTTCTTTCTTTC
1 TCTTTTTCTTTCTTTC
84134833 TCTTTTT-TTT-TTTC
1 TCTTTTTCTTTCTTTC
84134847 TC
1 TC
84134849 GAGAAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
TCTTTTTCTTTCTTTC
Found at i:84142521 original size:20 final size:20
Alignment explanation
Indices: 84142477--84142522 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
84142467 ATAATGAATG
* * *
84142477 AAAAATAAAAAGAATTAAAT
1 AAAACTAAAAAAAATTAAAC
*
84142497 TAAACTAAAAAAAATTAAAC
1 AAAACTAAAAAAAATTAAAC
84142517 AAAACT
1 AAAACT
84142523 CACACATGAC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.72, C:0.07, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAACTAAAAAAAATTAAAC
Found at i:84143647 original size:15 final size:15
Alignment explanation
Indices: 84143617--84143663 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
84143607 TATTCGTAAA
*
84143617 TTTAAAA-TTTAGTT
1 TTTAAAATTTTATTT
*
84143631 TTTATAATTTTATTT
1 TTTAAAATTTTATTT
* *
84143646 TTAAAAATTTAATTT
1 TTTAAAATTTTATTT
84143661 TTT
1 TTT
84143664 TTACTTTTCA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 6 0.23
15 20 0.77
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (15 bp):
TTTAAAATTTTATTT
Found at i:84145070 original size:3 final size:3
Alignment explanation
Indices: 84145055--84145091 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
84145045 ATATGTAAAT
*
84145055 TTA TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
84145092 GGTAAAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:84146469 original size:3 final size:3
Alignment explanation
Indices: 84146461--84146497 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
84146451 CATGGGCTTT
84146461 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
84146498 ATGTATTTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:84146800 original size:2 final size:2
Alignment explanation
Indices: 84146793--84146817 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
84146783 ACTTAATCTA
84146793 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
84146818 AAGAGAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:84151510 original size:3 final size:3
Alignment explanation
Indices: 84151502--84151546 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
84151492 TTTGTTGCAC
84151502 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
84151547 TGTCTTTTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:84151880 original size:30 final size:29
Alignment explanation
Indices: 84151829--84151892 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
84151819 TAGTCTATAT
*
84151829 TTTTATAACTTTTAAAAGATTAAATTAAAA
1 TTTTATAACTTTTAAAAGATT-AAGTAAAA
**
84151859 TTTTATAA-TTTTAAGGGGATTAAGTAAAA
1 TTTTATAACTTTTAA-AAGATTAAGTAAAA
84151888 TTTTA
1 TTTTA
84151893 CTTTTACTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 18 0.60
30 12 0.40
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.45
Consensus pattern (29 bp):
TTTTATAACTTTTAAAAGATTAAGTAAAA
Found at i:84152846 original size:9 final size:10
Alignment explanation
Indices: 84152821--84152845 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
84152811 AAAATACATA
84152821 AAAAAATATC
1 AAAAAATATC
84152831 AAAAAATATC
1 AAAAAATATC
84152841 AAAAA
1 AAAAA
84152846 TCAAAGCCGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAATATC
Found at i:84164978 original size:31 final size:31
Alignment explanation
Indices: 84164939--84164997 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
84164929 CTGTTTAGGT
*
84164939 TAACATTAAAATT-CTAAAATTAAAAAAGTA
1 TAACATTAAAATTGATAAAATTAAAAAAGTA
*
84164969 TAACAATTAAAATTGATCAAATTAAAAAA
1 TAAC-ATTAAAATTGATAAAATTAAAAAA
84164998 CAATGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 4 0.16
31 9 0.36
32 12 0.48
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.29
Consensus pattern (31 bp):
TAACATTAAAATTGATAAAATTAAAAAAGTA
Found at i:84165214 original size:29 final size:29
Alignment explanation
Indices: 84165177--84165241 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
84165167 AAAAATCTGG
* * *
84165177 TTAAATTAGTTCTTATACTATTAAATAGA
1 TTAAATTAGTTCATACACTATTAAAAAGA
*
84165206 TTAACTTAGTTCATACACTATTAAAAAGA
1 TTAAATTAGTTCATACACTATTAAAAAGA
84165235 TTCAAAT
1 TT-AAAT
84165242 AAAGTTAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (29 bp):
TTAAATTAGTTCATACACTATTAAAAAGA
Found at i:84166422 original size:21 final size:21
Alignment explanation
Indices: 84166397--84166442 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
84166387 TTTATGAATA
84166397 TTCTCTGTCTTTTGACACGCT
1 TTCTCTGTCTTTTGACACGCT
84166418 TTCTCTGTCTTTTGACACGCT
1 TTCTCTGTCTTTTGACACGCT
84166439 TTCT
1 TTCT
84166443 ATTTTTCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.09, C:0.28, G:0.13, T:0.50
Consensus pattern (21 bp):
TTCTCTGTCTTTTGACACGCT
Found at i:84180825 original size:92 final size:92
Alignment explanation
Indices: 84180668--84180844 Score: 284
Period size: 92 Copynumber: 1.9 Consensus size: 92
84180658 TACATTTTTT
* * *
84180668 TGTTCTGTCATTTGAACTGATTTCTTTGCTTCATTGATGAGAACTGCACCGTATTGCGGTAGGAT
1 TGTTCTGTCATTTGAACTGATTTATTTGCTTCATTGATGAGAACTGCACCATATGGCGGTAGGAT
*
84180733 GCTATAAAGCCTACATGCTCGGTGCCG
66 GCTATAAAACCTACATGCTCGGTGCCG
* *
84180760 TGTTCTGTCATTTGAA-TCGATTTATTTGCTTCATTGATGAGAACTGTACCATATGGTGGTAGGA
1 TGTTCTGTCATTTGAACT-GATTTATTTGCTTCATTGATGAGAACTGCACCATATGGCGGTAGGA
84180824 TGCTATAAAACCTACATGCTC
65 TGCTATAAAACCTACATGCTC
84180845 AGTGTTGTGG
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
91 1 0.01
92 77 0.99
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (92 bp):
TGTTCTGTCATTTGAACTGATTTATTTGCTTCATTGATGAGAACTGCACCATATGGCGGTAGGAT
GCTATAAAACCTACATGCTCGGTGCCG
Found at i:84182502 original size:11 final size:10
Alignment explanation
Indices: 84182485--84182510 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
84182475 GTATACATGC
84182485 ATTTTTTTTT
1 ATTTTTTTTT
84182495 ATTTTTTTTT
1 ATTTTTTTTT
84182505 ATTTTT
1 ATTTTT
84182511 GCGTTAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (10 bp):
ATTTTTTTTT
Found at i:84197372 original size:11 final size:11
Alignment explanation
Indices: 84197356--84197401 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
84197346 CTAAACTTTT
84197356 AATTTAATATA
1 AATTTAATATA
*
84197367 AATTTAATATT
1 AATTTAATATA
*
84197378 AATTAAATAT-
1 AATTTAATATA
84197388 AA-TTAAT-TA
1 AATTTAATATA
84197397 AATTT
1 AATTT
84197402 TCACGTCATT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
8 1 0.03
9 6 0.20
10 4 0.13
11 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AATTTAATATA
Found at i:84205633 original size:53 final size:53
Alignment explanation
Indices: 84205575--84205685 Score: 132
Period size: 53 Copynumber: 2.1 Consensus size: 53
84205565 AAAACAAACT
* * * *
84205575 TATATTTACACACACATATTTATATAGATATAATTGTGATATATTTGTATGTA
1 TATATTCACACACACATATTTATACAGATATAATTATCATATATTTGTATGTA
* * * * * *
84205628 TATATTCACATATATATATTTGTACAGATGTAATTATCATATATTTTTATGTA
1 TATATTCACACACACATATTTATACAGATATAATTATCATATATTTGTATGTA
84205681 TATAT
1 TATAT
84205686 AATATAGTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.48
Consensus pattern (53 bp):
TATATTCACACACACATATTTATACAGATATAATTATCATATATTTGTATGTA
Found at i:84206525 original size:8 final size:8
Alignment explanation
Indices: 84206512--84206539 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
84206502 TTTTATTTAT
84206512 AAAAGATA
1 AAAAGATA
84206520 AAAAGATA
1 AAAAGATA
84206528 AAAAGATA
1 AAAAGATA
84206536 AAAA
1 AAAA
84206540 TAATTTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAAGATA
Found at i:84207234 original size:2 final size:2
Alignment explanation
Indices: 84207227--84207261 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
84207217 GAATGAGTGA
84207227 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84207262 ATTGCTAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:84209633 original size:23 final size:23
Alignment explanation
Indices: 84209607--84209659 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
84209597 TTATGTGTTC
84209607 ATGCTATA-TACTAAAAAAATAAT
1 ATGCTATATTACTAAAAAAA-AAT
**
84209630 ATGCT-TATTTGTAAAAAAAAAT
1 ATGCTATATTACTAAAAAAAAAT
*
84209652 ATGTTATA
1 ATGCTATA
84209660 ATTTTTTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.36
Consensus pattern (23 bp):
ATGCTATATTACTAAAAAAAAAT
Found at i:84216537 original size:131 final size:131
Alignment explanation
Indices: 84216094--84216691 Score: 499
Period size: 132 Copynumber: 4.5 Consensus size: 131
84216084 CCGAGGAGAT
** * * * * * *
84216094 ATTCGATTATTCGGAACAAACGGGAAATTGCAACCCAGCACGATAAGGTACTATTCCCTGAATTG
1 ATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCC-GAATTG
* ** * * * * *
84216159 CCCAAACATCGAA-TACCGCCTTCGTTTTAAAGGGTTTTTAGAAAACGTGAGTGAAATGTCGAAG
65 -CCAAACA-CCAAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGACATGAGTGAAATCTTGAAG
84216223 GAATC
128 GAA-C
* * *** * * *
84216228 -TTCGATTGTTTTGA-AAAGACGAGAAATCATAACCCAACACGTTAAGGCACGATTCCCGAATTA
1 ATTCGATTATTTTGAGCAA-ACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCCGAATTG
* * * * * * ** * * *
84216291 TCAAACACCGAGTATTGTCTTCGTTTTGGAAGGTTTTTTTATAA-ACGCGAGTGAAAACCTAAAG
65 CCAAACACCAAGTATTGCCTTCGTTTT-AAAGG-ATTTTTAGAAGACATGAGTGAAATCTTGAAG
*
84216355 GAAT
128 GAAC
* * ** * *
84216359 ATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCCCGAATTGC
1 ATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCCGAATTGC
* * * *
84216424 CAAACACCAAGTATTGCTTTCGTTTTAAAGGATTTTTAGAAGACATTAGTGAAATTTTGAAGGGA
66 CAAACACCAAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGACATGAGTGAAATCTTGAAGGAA
84216489 C
131 C
* * * *
84216490 ATTCGAATATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCTACAAATTG
1 ATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTC-CCGAATTG
* * *** * * *
84216555 TCAAATC-TCAAACCTTACCTTCGTTTTCAAGAATTTTTAGAAGACATG-GTTGAAATCTTGAAG
65 CCAAA-CACCAAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGACATGAG-TGAAATCTTGAAG
*
84216618 GAAT
128 GAAC
*
84216622 ATTTGATTATTTTGAGCAAAC-ACGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATT
1 ATTCGATTATTTTGAGCAAACGA-GAAATTGCAACCCAGCACGTTAGGGCACGATTCC-CGAATT
84216686 GCCAAA
64 GCCAAA
84216692 TATCAAATCT
Statistics
Matches: 371, Mismatches: 81, Indels: 26
0.78 0.17 0.05
Matches are distributed among these distances:
130 10 0.03
131 87 0.23
132 221 0.60
133 53 0.14
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (131 bp):
ATTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCCGAATTGC
CAAACACCAAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGACATGAGTGAAATCTTGAAGGAA
C
Found at i:84217083 original size:21 final size:23
Alignment explanation
Indices: 84217033--84217083 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 23
84217023 ACAATAATGT
* *
84217033 ACATAGCATGATATAGAATAACT
1 ACATAGCAAGATATAGAATAACA
84217056 A-AT-GCAAGATATA-AA-AACA
1 ACATAGCAAGATATAGAATAACA
84217075 ACATAGCAA
1 ACATAGCAA
84217084 TTAGAAGCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
19 4 0.17
20 4 0.17
21 13 0.54
22 2 0.08
23 1 0.04
ACGTcount: A:0.55, C:0.14, G:0.12, T:0.20
Consensus pattern (23 bp):
ACATAGCAAGATATAGAATAACA
Found at i:84219512 original size:13 final size:14
Alignment explanation
Indices: 84219496--84219531 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
84219486 CAATCTCGTA
84219496 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
84219509 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
84219522 TCTC-ATTTCA
1 TCTCAATTTCA
84219532 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:84219614 original size:23 final size:23
Alignment explanation
Indices: 84219585--84219642 Score: 116
Period size: 23 Copynumber: 2.5 Consensus size: 23
84219575 ACTTATTTAC
84219585 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
84219608 CCCAAACACACCAGAATATCCAA
1 CCCAAACACACCAGAATATCCAA
84219631 CCCAAACACACC
1 CCCAAACACACC
84219643 CGAAATATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.47, C:0.43, G:0.03, T:0.07
Consensus pattern (23 bp):
CCCAAACACACCAGAATATCCAA
Found at i:84219929 original size:8 final size:10
Alignment explanation
Indices: 84219900--84219940 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
84219890 ATTCTAATAA
*
84219900 TCACATATTT
1 TCACACATTT
84219910 TCACACATTT
1 TCACACATTT
84219920 TCACA-A-TT
1 TCACACATTT
*
84219928 TCATACATTT
1 TCACACATTT
84219938 TCA
1 TCA
84219941 TTCAATTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 6 0.22
9 2 0.07
10 19 0.70
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (10 bp):
TCACACATTT
Found at i:84220169 original size:15 final size:15
Alignment explanation
Indices: 84220149--84220195 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
84220139 ATATATATAT
84220149 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
84220164 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
84220179 TTCAATCAATATAAA
1 TTCAATCAATATAAA
84220194 TT
1 TT
84220196 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:84220895 original size:6 final size:6
Alignment explanation
Indices: 84220884--84220912 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
84220874 AAACCCCAAA
84220884 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
84220913 TTCTCCCCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:84221203 original size:21 final size:22
Alignment explanation
Indices: 84221150--84221206 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
84221140 CAATTTAAAT
*
84221150 AATAATAACAATAACAATAATA
1 AATAATAATAATAACAATAATA
* *
84221172 ATTAA-ATATAA-AACTATAATA
1 AATAATA-ATAATAACAATAATA
84221193 AATAATAATAATAA
1 AATAATAATAATAA
84221207 TTTAATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (22 bp):
AATAATAATAATAACAATAATA
Found at i:84226218 original size:46 final size:46
Alignment explanation
Indices: 84226166--84226438 Score: 413
Period size: 46 Copynumber: 5.9 Consensus size: 46
84226156 GTGTGCTCTT
84226166 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
*
84226212 TGATATGAAATGTGAAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
84226258 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
* *
84226304 TGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
* * ** *
84226350 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
* * * * *
84226396 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
84226439 TCACGTCAAA
Statistics
Matches: 211, Mismatches: 15, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 210 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
Found at i:84231483 original size:35 final size:35
Alignment explanation
Indices: 84231439--84231605 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
84231429 TCCTCATTGA
** *
84231439 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
84231474 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
84231514 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
84231549 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
84231584 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
84231606 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:84231522 original size:75 final size:73
Alignment explanation
Indices: 84231434--84231605 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
84231424 GGTTTTCCTC
** * * **
84231434 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
84231498 TCAGTATGG
65 TCAGTATGG
*
84231507 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
84231572 CTCAGTATGG
64 CTCAGTATGG
84231582 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
84231606 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:84238973 original size:35 final size:35
Alignment explanation
Indices: 84238929--84239095 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
84238919 TCCTCATTGA
** *
84238929 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
84238964 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
84239004 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
84239039 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
84239074 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
84239096 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:84239012 original size:75 final size:73
Alignment explanation
Indices: 84238924--84239095 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
84238914 GGTTTTCCTC
** * * **
84238924 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
84238988 TCAGTATGG
65 TCAGTATGG
*
84238997 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
84239062 CTCAGTATGG
64 CTCAGTATGG
84239072 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
84239096 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Done.