Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 291 of 292
Found at i:84243635 original size:52 final size:49
Alignment explanation
Indices: 84243455--84243655 Score: 189
Period size: 47 Copynumber: 4.1 Consensus size: 49
84243445 ATATAGTCAT
* ** * *
84243455 ATATCACA-TACCGAGGCCATAGCCCAGCCATGGTCTTACACGG-ATCAC
1 ATATCACACT-CCGATGCCATAGCCCAGATATGGTCTTATACGGAAGCAC
* * *
84243503 ATATCACACT--GATGCCATATCCCAGATATGGTCTTATACAGTAGCAC
1 ATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAGCAC
* *
84243550 ATATCACA--CCGATGCCATATCCCGGATATGGTCTTATACGGAAGCAC
1 ATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAGCAC
* * * *
84243597 ATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGAAATCAC
1 ATATCACA---CTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAGCAC
*
84243649 ATTTCAC
1 ATATCAC
84243656 GTGCTGCCAT
Statistics
Matches: 127, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
46 25 0.20
47 54 0.43
48 8 0.06
49 1 0.01
52 39 0.31
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (49 bp):
ATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAGCAC
Found at i:84251676 original size:54 final size:54
Alignment explanation
Indices: 84251603--84251706 Score: 208
Period size: 54 Copynumber: 1.9 Consensus size: 54
84251593 GTAATTGTCG
84251603 TTGCAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATA
1 TTGCAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATA
84251657 TTGCAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTT
1 TTGCAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTT
84251707 CTGTAAGTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (54 bp):
TTGCAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATA
Found at i:84256278 original size:49 final size:49
Alignment explanation
Indices: 84256209--84256459 Score: 466
Period size: 49 Copynumber: 5.1 Consensus size: 49
84256199 GTACATAATA
* *
84256209 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
84256258 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
84256307 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
84256356 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
84256405 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
84256454 ATATAT
1 ATATAT
84256460 ATGTGGTAAA
Statistics
Matches: 199, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 199 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:84256583 original size:37 final size:36
Alignment explanation
Indices: 84256528--84256614 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
84256518 AACTTGGAAA
84256528 TATGTTCCGGGTGAGACCCGATGACTACGAGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGAGTGGAGAT
*
84256566 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGAGTGGAGAT
84256603 TATGTCCGGGTA
1 TATGTCCGGGTA
84256615 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGAGTGGAGAT
Found at i:84259621 original size:28 final size:27
Alignment explanation
Indices: 84259584--84259736 Score: 125
Period size: 28 Copynumber: 5.5 Consensus size: 27
84259574 GAATATATGA
*
84259584 ACTATGTGTGTGAAATTATTAACTGAGC
1 ACTATGTGTGCGAAATTATTAAC-GAGC
* **
84259612 ACTATGTGTGCGAGATCGGGTGTAA-G-GC
1 ACTATGTGTGCGAAAT--TAT-TAACGAGC
84259640 ACTATGTGTGCGAAATTATTAACTGAGC
1 ACTATGTGTGCGAAATTATTAAC-GAGC
* **
84259668 ACTATGTGTGCGAGATCGGGTGTAA-G-GC
1 ACTATGTGTGCGAAAT--TAT-TAACGAGC
*
84259696 ACTATGTGTGTGAAATTATTAACCGAGC
1 ACTATGTGTGCGAAATTATTAA-CGAGC
84259724 ACTATGTGTGCGA
1 ACTATGTGTGCGA
84259737 GATCGGGTGT
Statistics
Matches: 98, Mismatches: 15, Indels: 24
0.72 0.11 0.18
Matches are distributed among these distances:
25 6 0.06
26 2 0.02
27 2 0.02
28 78 0.80
29 2 0.02
30 2 0.02
31 6 0.06
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
ACTATGTGTGCGAAATTATTAACGAGC
Found at i:84259646 original size:56 final size:56
Alignment explanation
Indices: 84259584--84259773 Score: 326
Period size: 56 Copynumber: 3.4 Consensus size: 56
84259574 GAATATATGA
*
84259584 ACTATGTGTGTGAAATTATTAACTGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
1 ACTATGTGTGCGAAATTATTAACTGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
84259640 ACTATGTGTGCGAAATTATTAACTGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
1 ACTATGTGTGCGAAATTATTAACTGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
* *
84259696 ACTATGTGTGTGAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
1 ACTATGTGTGCGAAATTATTAACTGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
*
84259752 ACTGCGTGTGTGCGAAATTATT
1 ACT--ATGTGTGCGAAATTATT
84259774 TAAGGAATAT
Statistics
Matches: 127, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
56 112 0.88
58 15 0.12
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (56 bp):
ACTATGTGTGCGAAATTATTAACTGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
Found at i:84259753 original size:28 final size:28
Alignment explanation
Indices: 84259610--84259754 Score: 131
Period size: 28 Copynumber: 5.2 Consensus size: 28
84259600 TATTAACTGA
84259610 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAGATCGGGTGTAAG
* **
84259638 GCACTATGTGTGCGAAAT--TAT-TAACTG
1 GCACTATGTGTGCGAGATCGGGTGTAA--G
84259665 AGCACTATGTGTGCGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGGGTGTAAG
* * **
84259694 GCACTATGTGTGTGAAAT--TAT-TAACCG
1 GCACTATGTGTGCGAGATCGGGTGTAA--G
84259721 AGCACTATGTGTGCGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGGGTGTAAG
84259750 GCACT
1 GCACT
84259755 GCGTGTGTGC
Statistics
Matches: 91, Mismatches: 14, Indels: 24
0.71 0.11 0.19
Matches are distributed among these distances:
25 6 0.07
26 2 0.02
27 2 0.02
28 71 0.78
29 2 0.02
30 2 0.02
31 6 0.07
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:84262496 original size:53 final size:53
Alignment explanation
Indices: 84262355--84262505 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
84262345 ACAAGTGTGC
* **
84262355 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
84262408 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
84262461 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
84262506 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:84269534 original size:53 final size:53
Alignment explanation
Indices: 84269393--84269543 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
84269383 ACAAGTGTGC
* **
84269393 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
84269446 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
84269499 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
84269544 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:84272962 original size:22 final size:23
Alignment explanation
Indices: 84272937--84272984 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
84272927 TTTTATTTAT
84272937 TTTATGTTTATGGTTT-TTTTG-G
1 TTTAT-TTTATGGTTTATTTTGTG
*
84272959 TTTATTTTTTGGTTTATTTTGTG
1 TTTATTTTATGGTTTATTTTGTG
84272982 TTT
1 TTT
84272985 GCATGGGCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 10 0.43
23 4 0.17
ACGTcount: A:0.08, C:0.00, G:0.19, T:0.73
Consensus pattern (23 bp):
TTTATTTTATGGTTTATTTTGTG
Found at i:84272968 original size:12 final size:12
Alignment explanation
Indices: 84272951--84272978 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
84272941 TGTTTATGGT
84272951 TTTTTTGGTTTA
1 TTTTTTGGTTTA
84272963 TTTTTTGGTTTA
1 TTTTTTGGTTTA
84272975 TTTT
1 TTTT
84272979 GTGTTTGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.14, T:0.79
Consensus pattern (12 bp):
TTTTTTGGTTTA
Found at i:84277059 original size:14 final size:14
Alignment explanation
Indices: 84277040--84277069 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
84277030 AACAATTATC
*
84277040 TTTAATTTTGGGTT
1 TTTAATTCTGGGTT
84277054 TTTAATTCTGGGTT
1 TTTAATTCTGGGTT
84277068 TT
1 TT
84277070 ATTTGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.20, T:0.63
Consensus pattern (14 bp):
TTTAATTCTGGGTT
Found at i:84287608 original size:27 final size:27
Alignment explanation
Indices: 84287578--84287633 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
84287568 AGAAATCAAC
*
84287578 GTACCGTTTTTATTTTGGTATTGTTAT
1 GTACCGTTTTTATTTTGGTATTGCTAT
*
84287605 GTACCTTTTTTATTTTGGTATTGCTAT
1 GTACCGTTTTTATTTTGGTATTGCTAT
84287632 GT
1 GT
84287634 GATGTTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.14, C:0.09, G:0.18, T:0.59
Consensus pattern (27 bp):
GTACCGTTTTTATTTTGGTATTGCTAT
Found at i:84287641 original size:27 final size:27
Alignment explanation
Indices: 84287578--84287641 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
84287568 AGAAATCAAC
* *
84287578 GTACCGTTTTTATTTTGGTATTGTTAT
1 GTACTGTTTTTATTTTGGTATTGCTAT
84287605 GTACCT-TTTTTATTTTGGTATTGCTAT
1 GTA-CTGTTTTTATTTTGGTATTGCTAT
84287632 GTGA-TGTTTT
1 GT-ACTGTTTT
84287642 GAGTTTATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 1 0.03
27 29 0.91
28 2 0.06
ACGTcount: A:0.14, C:0.08, G:0.19, T:0.59
Consensus pattern (27 bp):
GTACTGTTTTTATTTTGGTATTGCTAT
Found at i:84288048 original size:80 final size:80
Alignment explanation
Indices: 84287943--84288098 Score: 276
Period size: 80 Copynumber: 1.9 Consensus size: 80
84287933 AAAAGGATTC
*
84287943 ATCCACACATTAAAATCATGCTTTAATTTTGTTATAATATTATTGTTTTTGTATGCTTTAAAAAT
1 ATCCACACATTAAAATCATGCTTTAATTTTGTTATAATATTATTATTTTTGTATGCTTTAAAAAT
84288008 ATAAATTTCAAATTG
66 ATAAATTTCAAATTG
* * *
84288023 ATCCGCACATTAAAATCGTGTTTTAATTTTGTTATAATATTATTATTTTTGTATGCTTTAAAAAT
1 ATCCACACATTAAAATCATGCTTTAATTTTGTTATAATATTATTATTTTTGTATGCTTTAAAAAT
84288088 ATAAATTTCAA
66 ATAAATTTCAA
84288099 CAATAATGTT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 72 1.00
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.47
Consensus pattern (80 bp):
ATCCACACATTAAAATCATGCTTTAATTTTGTTATAATATTATTATTTTTGTATGCTTTAAAAAT
ATAAATTTCAAATTG
Found at i:84288596 original size:16 final size:16
Alignment explanation
Indices: 84288577--84288640 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 16
84288567 TTGTAAGTTC
84288577 AATTATTTTAGATTTT
1 AATTATTTTAGATTTT
*
84288593 AATTATTTT-GAATTTG
1 AATTATTTTAG-ATTTT
* *
84288609 AGTTACTTGTA-ATTTT
1 AATTA-TTTTAGATTTT
* *
84288625 AATTAATTTAAATTTT
1 AATTATTTTAGATTTT
84288641 CAAGGTCAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
15 4 0.11
16 30 0.81
17 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.58
Consensus pattern (16 bp):
AATTATTTTAGATTTT
Found at i:84293846 original size:22 final size:21
Alignment explanation
Indices: 84293820--84293860 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 21
84293810 AATTAAATTT
84293820 AAATTATATATATAAT-TATACA
1 AAATTA-A-ATATAATGTATACA
84293842 AAATTAAATATAATGTATA
1 AAATTAAATATAATGTATA
84293861 AGAATACACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
AAATTAAATATAATGTATACA
Found at i:84296727 original size:9 final size:9
Alignment explanation
Indices: 84296706--84296855 Score: 61
Period size: 9 Copynumber: 15.6 Consensus size: 9
84296696 AAGGTTGTAA
84296706 AAAAATTATT
1 AAAAATTA-T
84296716 AAAAATTAT
1 AAAAATTAT
**
84296725 AAAAATGCT
1 AAAAATTAT
*
84296734 GAAAATTAT
1 AAAAATTAT
*
84296743 AAAAAAATTGT
1 --AAAAATTAT
84296754 AAAAA-TAGT
1 AAAAATTA-T
**
84296763 AAAAAAAATT
1 AAAAATTA-T
* *
84296773 AAAATTTGT
1 AAAAATTAT
84296782 AAATAATTAT
1 AAA-AATTAT
*
84296792 CAAATACTT-T
1 -AAA-AATTAT
*
84296802 AAAAATATTT
1 AAAAAT-TAT
* *
84296812 TAAAATTGT
1 AAAAATTAT
84296821 AAAAAAGTTATT
1 -AAAAA-TTA-T
84296833 AAAAATTAT
1 AAAAATTAT
*
84296842 AAAAATTGT
1 AAAAATTAT
84296851 AAAAA
1 AAAAA
84296856 AATTAACAAA
Statistics
Matches: 106, Mismatches: 23, Indels: 23
0.70 0.15 0.15
Matches are distributed among these distances:
8 3 0.03
9 49 0.46
10 32 0.30
11 21 0.20
12 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:84296730 original size:19 final size:19
Alignment explanation
Indices: 84296706--84296848 Score: 71
Period size: 20 Copynumber: 7.4 Consensus size: 19
84296696 AAGGTTGTAA
84296706 AAAAATTATTAAAAATTAT
1 AAAAATTATTAAAAATTAT
** *
84296725 AAAAA-TGCTGAAAATTAT
1 AAAAATTATTAAAAATTAT
*
84296743 AAAAAAATT-GTAAAAA-TAGT
1 --AAAAATTATTAAAAATTA-T
** * *
84296763 AAAAAAAATTAAAATTTGT
1 AAAAATTATTAAAAATTAT
* *
84296782 AAATAATTATCAAATACTT-T
1 AAA-AATTATTAAA-AATTAT
* *
84296802 AAAAA-TATTTTAAAATTGT
1 AAAAATTA-TTAAAAATTAT
84296821 AAAAAAGTTATTAAAAATTAT
1 -AAAAA-TTATTAAAAATTAT
84296842 AAAAATT
1 AAAAATT
84296849 GTAAAAAAAT
Statistics
Matches: 92, Mismatches: 19, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
18 20 0.22
19 24 0.26
20 33 0.36
21 13 0.14
22 2 0.02
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (19 bp):
AAAAATTATTAAAAATTAT
Found at i:84296747 original size:39 final size:38
Alignment explanation
Indices: 84296703--84296847 Score: 116
Period size: 40 Copynumber: 3.7 Consensus size: 38
84296693 AGAAAGGTTG
** *
84296703 TAAAAAAATTATTAAAAATTATAAAAATGCTGAAAATT
1 TAAAAAAATTATTAAAAATTATAAAAATAATTAAAATT
* *
84296741 ATAAAAAAATT-GTAAAAA-TAGTAAAAAAAATTAAAATT
1 -TAAAAAAATTATTAAAAATTA-TAAAAATAATTAAAATT
* * * * *
84296779 TGTAAATAATTATCAAATACTT-TAAAAATATTTTAAAATT
1 T-AAAAAAATTATTAAA-AATTATAAAAATA-ATTAAAATT
*
84296819 GTAAAAAAGTTATTAAAAATTATAAAAAT
1 -TAAAAAAATTATTAAAAATTATAAAAAT
84296848 TGTAAAAAAA
Statistics
Matches: 81, Mismatches: 17, Indels: 15
0.72 0.15 0.13
Matches are distributed among these distances:
37 3 0.04
38 26 0.32
39 23 0.28
40 27 0.33
41 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (38 bp):
TAAAAAAATTATTAAAAATTATAAAAATAATTAAAATT
Found at i:84296856 original size:19 final size:19
Alignment explanation
Indices: 84296700--84296855 Score: 70
Period size: 19 Copynumber: 8.0 Consensus size: 19
84296690 TAAAGAAAGG
84296700 TTGTAAAAAAATTATTAAAAA
1 TTGT-AAAAAATTA-TAAAAA
* ** *
84296721 TTAT-AAAAATGCTGAAAA
1 TTGTAAAAAATTATAAAAA
* *
84296739 TTATAAAAAAATTGTAAAAA
1 TTGT-AAAAAATTATAAAAA
* * *
84296759 TAGTAAAAAA-AATTAAAAT
1 TTGTAAAAAATTA-TAAAAA
* *
84296778 TTGTAAATAATTATCAAATAC
1 TTGTAAAAAATTAT-AAA-AA
*
84296799 TT-TAAAAATATT-TTAAAA
1 TTGTAAAAA-ATTATAAAAA
84296817 TTGTAAAAAAGTTATTAAAAA
1 TTGTAAAAAA-TTA-TAAAAA
* *
84296838 TTAT-AAAAATTGTAAAAA
1 TTGTAAAAAATTATAAAAA
84296856 AATTAACAAA
Statistics
Matches: 102, Mismatches: 22, Indels: 25
0.68 0.15 0.17
Matches are distributed among these distances:
18 19 0.19
19 38 0.37
20 28 0.27
21 17 0.17
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (19 bp):
TTGTAAAAAATTATAAAAA
Found at i:84302875 original size:22 final size:22
Alignment explanation
Indices: 84302850--84302908 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
84302840 ATATGGTTAA
84302850 ATTTTTTACTTAAATAATGGGT
1 ATTTTTTACTTAAATAATGGGT
**
84302872 ATTTGGTACTTAAATAATGGGT
1 ATTTTTTACTTAAATAATGGGT
*
84302894 ACTTTTTACTTAAAT
1 ATTTTTTACTTAAAT
84302909 TTAAAAATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.47
Consensus pattern (22 bp):
ATTTTTTACTTAAATAATGGGT
Found at i:84302956 original size:2 final size:2
Alignment explanation
Indices: 84302949--84303001 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
84302939 GAAAATTTTG
84302949 AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84302990 AT AT AT AT AT AT
1 AT AT AT AT AT AT
84303002 GAAATTACAG
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:84307577 original size:39 final size:39
Alignment explanation
Indices: 84307523--84307600 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
84307513 TTGACTCGAT
84307523 TTATGAACATATGTTATGTATAATGTCTAATTATGGCAG
1 TTATGAACATATGTTATGTATAATGTCTAATTATGGCAG
*
84307562 TTATGAACATGTGTTATGTATAATGTCTAATTATGGCAG
1 TTATGAACATATGTTATGTATAATGTCTAATTATGGCAG
84307601 AGGCCGTGGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (39 bp):
TTATGAACATATGTTATGTATAATGTCTAATTATGGCAG
Found at i:84311369 original size:29 final size:30
Alignment explanation
Indices: 84311318--84311386 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
84311308 TGAATATAAG
*
84311318 TTTGATTTAATGTGTAATATTATATATAAAAT
1 TTTGATTT--TGTGTAATATTATAAATAAAAT
* *
84311350 TTT-ATTTTGTGTGATTTTATAAATAAAAT
1 TTTGATTTTGTGTAATATTATAAATAAAAT
84311379 TTTGATTT
1 TTTGATTT
84311387 GATTTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 22 0.67
30 4 0.12
31 4 0.12
32 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (30 bp):
TTTGATTTTGTGTAATATTATAAATAAAAT
Found at i:84320340 original size:30 final size:30
Alignment explanation
Indices: 84320279--84320355 Score: 102
Period size: 30 Copynumber: 2.5 Consensus size: 30
84320269 GAAAAAACTT
*
84320279 AATAATTCGATAACTTAAATGAAAATTTTTA
1 AATAATTCAATAA-TTAAATGAAAATTTTTA
*
84320310 AATAATTCAATAATGTAAAT-AAATTTTTTA
1 AATAATTCAATAAT-TAAATGAAAATTTTTA
*
84320340 AATAATTTAATAATTA
1 AATAATTCAATAATTA
84320356 TCTTATAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
29 2 0.05
30 23 0.55
31 17 0.40
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (30 bp):
AATAATTCAATAATTAAATGAAAATTTTTA
Found at i:84321342 original size:20 final size:20
Alignment explanation
Indices: 84321295--84321336 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
84321285 TTTTATGTAC
*
84321295 ATAGATTAATTTATTTATTT
1 ATAGATTAATTAATTTATTT
84321315 ATAGATTAATTAATTTATTT
1 ATAGATTAATTAATTTATTT
84321335 AT
1 AT
84321337 TTATTAGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (20 bp):
ATAGATTAATTAATTTATTT
Found at i:84324020 original size:14 final size:14
Alignment explanation
Indices: 84324001--84324028 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
84323991 GAATGTTGGG
84324001 TTTTTATATAATTT
1 TTTTTATATAATTT
84324015 TTTTTATATAATTT
1 TTTTTATATAATTT
84324029 AATTATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTTATATAATTT
Found at i:84326678 original size:2 final size:2
Alignment explanation
Indices: 84326673--84326699 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
84326663 TTTTTTATTT
84326673 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
84326700 TAAATTCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:84326932 original size:129 final size:130
Alignment explanation
Indices: 84326713--84327034 Score: 481
Period size: 129 Copynumber: 2.5 Consensus size: 130
84326703 ATTCTAATGT
* * *
84326713 TATGTTTAAGAACGTGAACTTGAAA-ATTTG-GATTTAGGTTTCAATTACTATATAAATCGTGAG
1 TATGATTAAGAACGTGAACTTGAAAGATTTGAG-TTTAGATTTCAATTACTCTATAAATCGTGAG
* *
84326776 GAGAATGGAATTTATACTTAAAATTAGTTGAGTTTCAGTATGATTATATATCTCGAATTCAATTA
65 GAGAATGAAATTTATACTTAAAATTAGTTGAGTTTCAGTATGATTACATATCTCGAATTCAATTA
84326841 G
130 G
*
84326842 TATGATTAAGAACGTGAATTTGAAAGATTTGAGTTTAGATTTCAATTAC-CTATAAATC-TCGAG
1 TATGATTAAGAACGTGAACTTGAAAGATTTGAGTTTAGATTTCAATTACTCTATAAATCGT-GAG
* *
84326905 GAGAATGAAATTTCTACTTAAAATTAGTTGAGTTTCAGTATGATTACATATTTCGAATTCAATTA
65 GAGAATGAAATTTATACTTAAAATTAGTTGAGTTTCAGTATGATTACATATCTCGAATTCAATTA
84326970 G
130 G
* * * * *
84326971 CATGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTGAG
1 TATGATTAAGAACGTGAACTTGAAAGATTTGAGTTTAGATTTCAATTACTCTATAAATCGTGAG
84327035 AAGAGTAAAA
Statistics
Matches: 174, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
128 1 0.01
129 139 0.80
130 32 0.18
131 2 0.01
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (130 bp):
TATGATTAAGAACGTGAACTTGAAAGATTTGAGTTTAGATTTCAATTACTCTATAAATCGTGAGG
AGAATGAAATTTATACTTAAAATTAGTTGAGTTTCAGTATGATTACATATCTCGAATTCAATTAG
Found at i:84327129 original size:85 final size:85
Alignment explanation
Indices: 84326967--84327130 Score: 206
Period size: 85 Copynumber: 1.9 Consensus size: 85
84326957 TCGAATTCAA
**
84326967 TTAGCATGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGT
1 TTAGCATGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCAC
*
84327032 GAGAAGAGTAAAATCTATAG
66 GAGAAGAATAAAATCTATAG
* * * * * *
84327052 TTAGTATGATTAAGAATATGAATTTGAAA-CATTTGAGTTTGGATTTC-AGTTACTCTATAAGTC
1 TTAGCATGATTAAGAACATGAACTTGAAAGC-TCTGAGTTTAGATTTCAAG-TACTCTATAAATC
*
84327115 ACGAGGAGAATAAAAT
64 ACGAGAAGAATAAAAT
84327131 GTTTACTTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 3 0.04
85 64 0.96
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (85 bp):
TTAGCATGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCAC
GAGAAGAATAAAATCTATAG
Found at i:84327207 original size:214 final size:214
Alignment explanation
Indices: 84326838--84327259 Score: 600
Period size: 214 Copynumber: 2.0 Consensus size: 214
84326828 TCGAATTCAA
* * *
84326838 TTAGTATGATTAAGAACGTGAATTTGAAAGATTTGAGTTTAGATTTCAATTACCTATAAATCTCG
1 TTAGTATGATTAAGAACATGAATTTGAAACATTTGAGTTTAGATTTCAATTACCTATAAATCACG
* *
84326903 AGGAGAATGAAATTTCTACTTAAAATTAGTTGAGTTTCAGTATGATTACATATTTCGAATTCAAT
66 AGGAGAATAAAATTTCTACTTAAAATTAGTTAAGTTTCAGTATGATTACATATTTCGAATTCAAT
*
84326968 TAGCATGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTG
131 TAGCATGATTAAGAACAGGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTG
84327033 AGAAGAGTAAAATCTATAG
196 AGAAGAGTAAAATCTATAG
* * * *
84327052 TTAGTATGATTAAGAATATGAATTTGAAACATTTGAGTTTGGATTTCAGTTACTCTATAAGTCAC
1 TTAGTATGATTAAGAACATGAATTTGAAACATTTGAGTTTAGATTTCAATTAC-CTATAAATCAC
* * *
84327117 GAGGAGAATAAAATGTT-TACTT-AAATTA-TTCAAGTTTCTGTTTGATTATATATTTCGAATT-
65 GAGGAGAATAAAAT-TTCTACTTAAAATTAGTT-AAGTTTCAGTATGATTACATATTTCGAATTC
* * * * *
84327178 TATATAGTATGATTAAGAACAGGAACTTGAAAGCTTTGAGTTTAGTTTTCAATTACTCTATAAAT
128 AAT-TAGCATGATTAAGAACAGGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAAT
**
84327243 CGTGAGGGGAGTAAAAT
192 CGTGAGAAGAGTAAAAT
84327260 GCATATTTAA
Statistics
Matches: 184, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
213 4 0.02
214 151 0.82
215 27 0.15
216 2 0.01
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (214 bp):
TTAGTATGATTAAGAACATGAATTTGAAACATTTGAGTTTAGATTTCAATTACCTATAAATCACG
AGGAGAATAAAATTTCTACTTAAAATTAGTTAAGTTTCAGTATGATTACATATTTCGAATTCAAT
TAGCATGATTAAGAACAGGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTG
AGAAGAGTAAAATCTATAG
Found at i:84327292 original size:129 final size:129
Alignment explanation
Indices: 84327050--84327429 Score: 471
Period size: 129 Copynumber: 2.9 Consensus size: 129
84327040 TAAAATCTAT
* * * *
84327050 AGTTAGTATGATTAAGAATATGAATTTGAAACATTTGAGTTTGGATTTCAGTTACTCTATAAGTC
1 AGTTAGTATGATTAAGAACATGAATTTGAAACATTTGAGTTTAGATTTCAATTACTCTATAAATC
** * * *
84327115 ACGAGGAGAATAAAATGTTTACTTAAATTA-TTCAAGTTTCT-GTTTGATTATATATTTCGAATT
66 GTGAGGAGAATAAAATGTATACTTAAATTAGTT-GAGTTT-TAGTATGATTATATATTTCGAATT
*
84327178 T
129 C
* * *
84327179 A-TATAGTATGATTAAGAACAGGAACTTGAAAGC-TTTGAGTTTAGTTTTCAATTACTCTATAAA
1 AGT-TAGTATGATTAAGAACATGAATTTGAAA-CATTTGAGTTTAGATTTCAATTACTCTATAAA
* * * * * *
84327242 TCGTGAGGGGAGTAAAATGCATATTTAAATTAGTTGAGTTTTAGCATGATTATATATTCCGAATT
64 TCGTGAGGAGAATAAAATGTATACTTAAATTAGTTGAGTTTTAGTATGATTATATATTTCGAATT
84327307 C
129 C
* *
84327308 AGTTAGTACGATTAAGAACATGAATTTGAGACATTTGAGTTTAGATTTCAATTACTCTATAAATC
1 AGTTAGTATGATTAAGAACATGAATTTGAAACATTTGAGTTTAGATTTCAATTACTCTATAAATC
* * * *
84327373 GTGAGGAGAAAAAAATGTATACTTAAATTAGTTGAGATTTAGTGTTATTATATATTT
66 GTGAGGAGAATAAAATGTATACTTAAATTAGTTGAGTTTTAGTATGATTATATATTT
84327430 AAGATATAAA
Statistics
Matches: 211, Mismatches: 34, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
128 3 0.01
129 204 0.97
130 4 0.02
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (129 bp):
AGTTAGTATGATTAAGAACATGAATTTGAAACATTTGAGTTTAGATTTCAATTACTCTATAAATC
GTGAGGAGAATAAAATGTATACTTAAATTAGTTGAGTTTTAGTATGATTATATATTTCGAATTC
Found at i:84340752 original size:34 final size:34
Alignment explanation
Indices: 84340708--84340774 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
84340698 ACCCTAGCCG
*
84340708 CAGCAGGTGCTCCCCTCTTCTCCACCACCGACGC
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
* *
84340742 CAGCATGTGCTCCCCTCTGCTCCACTACCGACG
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACG
84340775 TCTACTAGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.15, C:0.48, G:0.18, T:0.19
Consensus pattern (34 bp):
CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
Found at i:84341660 original size:19 final size:18
Alignment explanation
Indices: 84341625--84341665 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
84341615 TTGTTAATTC
84341625 ACTTTTGTCCATTTTTTT
1 ACTTTTGTCCATTTTTTT
*
84341643 ACTTTT-TCTCATTATTTT
1 ACTTTTGTC-CATTTTTTT
84341661 A-TTTT
1 ACTTTT
84341666 AGTCTTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.15, C:0.15, G:0.02, T:0.68
Consensus pattern (18 bp):
ACTTTTGTCCATTTTTTT
Found at i:84341739 original size:25 final size:24
Alignment explanation
Indices: 84341711--84341768 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
84341701 CTGCTATCAT
*
84341711 TATTATATT-TTATTTATTAGCATGG
1 TATTATATTATTA-TTATTA-CATAG
*
84341736 TATTATTATTATTATTATTACTTAG
1 TATTA-TATTATTATTATTACATAG
84341761 TATTATAT
1 TATTATAT
84341769 ACATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 3 0.10
25 13 0.45
26 10 0.34
27 3 0.10
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (24 bp):
TATTATATTATTATTATTACATAG
Found at i:84341822 original size:18 final size:19
Alignment explanation
Indices: 84341786--84341823 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
84341776 TATCATATAG
*
84341786 TATTATTAATTTGTTTTAA
1 TATTATTAATTTGTGTTAA
*
84341805 TATTATTATTTTG-GTTAA
1 TATTATTAATTTGTGTTAA
84341823 T
1 T
84341824 GTATTTGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (19 bp):
TATTATTAATTTGTGTTAA
Found at i:84342350 original size:24 final size:23
Alignment explanation
Indices: 84342313--84342383 Score: 74
Period size: 23 Copynumber: 3.0 Consensus size: 23
84342303 CCTTTAACAT
84342313 TATATTCTTGTTATTATGTATGTA
1 TATATTCTT-TTATTATGTATGTA
*
84342337 TATATTTCTTTTATATATGTCT-TA
1 TATA-TTCTTTTAT-TATGTATGTA
*
84342361 T-TACTTCTATTATTATGTATGTA
1 TATA-TTCTTTTATTATGTATGTA
84342384 CCTAAATACA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
22 6 0.15
23 12 0.30
24 11 0.28
25 11 0.28
ACGTcount: A:0.25, C:0.07, G:0.08, T:0.59
Consensus pattern (23 bp):
TATATTCTTTTATTATGTATGTA
Found at i:84344114 original size:22 final size:21
Alignment explanation
Indices: 84344072--84344123 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
84344062 AATCATAATT
84344072 TTATAATTTTTAAAATATTAAA
1 TTATAA-TTTTAAAATATTAAA
** *
84344094 TTATAATTTTACCATATTTAAC
1 TTATAATTTTAAAATA-TTAAA
84344116 TTATAATT
1 TTATAATT
84344124 AAAGGAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (21 bp):
TTATAATTTTAAAATATTAAA
Found at i:84371155 original size:17 final size:19
Alignment explanation
Indices: 84371123--84371161 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
84371113 GATTTAGTAC
84371123 TTAAACTATATA-TTTTAT
1 TTAAACTATATATTTTTAT
*
84371141 TTAAATTAT-TATTTTTAT
1 TTAAACTATATATTTTTAT
84371159 TTA
1 TTA
84371162 TTTATTTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAAACTATATATTTTTAT
Found at i:84377223 original size:28 final size:29
Alignment explanation
Indices: 84377192--84377263 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
84377182 TACATGTAAT
*
84377192 TTTTGTATATTTGA-AATTTAA-TTTTTTA
1 TTTT-TATATTTAAGAATTTAATTTTTTTA
*
84377220 TTTTTATTTTTAAGAATTTAATTTTTTTA
1 TTTTTATATTTAAGAATTTAATTTTTTTA
*
84377249 TTTTTATTTTTAAGA
1 TTTTTATATTTAAGA
84377264 TTTTGATCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 7 0.17
28 11 0.28
29 22 0.55
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (29 bp):
TTTTTATATTTAAGAATTTAATTTTTTTA
Found at i:84377266 original size:28 final size:28
Alignment explanation
Indices: 84377206--84377263 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 28
84377196 GTATATTTGA
84377206 AATTTAATTTTTTATTTTTATTTTTAAG
1 AATTTAATTTTTTATTTTTATTTTTAAG
84377234 AATTTAATTTTTTTATTTTTATTTTTAAG
1 AATTTAA-TTTTTTATTTTTATTTTTAAG
84377263 A
1 A
84377264 TTTTGATCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (28 bp):
AATTTAATTTTTTATTTTTATTTTTAAG
Found at i:84378226 original size:30 final size:30
Alignment explanation
Indices: 84378191--84378247 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
84378181 TAACAATTAA
84378191 AAATTTCGAAATCTAAAAAG-TAAAAGGATT
1 AAATTTC-AAATCTAAAAAGATAAAAGGATT
* *
84378221 AAATTTCAAATGTATAAAGATAAAAGG
1 AAATTTCAAATCTAAAAAGATAAAAGG
84378248 GAGTTAAAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.54, C:0.05, G:0.14, T:0.26
Consensus pattern (30 bp):
AAATTTCAAATCTAAAAAGATAAAAGGATT
Found at i:84379530 original size:2 final size:2
Alignment explanation
Indices: 84379523--84379556 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
84379513 CTTATATTGG
*
84379523 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
84379557 GATGTAGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:84382081 original size:17 final size:17
Alignment explanation
Indices: 84382059--84382092 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
84382049 TAGAAATGAA
*
84382059 TGTCCAATTCTTAACGT
1 TGTCCAACTCTTAACGT
84382076 TGTCCAACTCTTAACGT
1 TGTCCAACTCTTAACGT
84382093 CGTTAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (17 bp):
TGTCCAACTCTTAACGT
Found at i:84382263 original size:22 final size:22
Alignment explanation
Indices: 84382233--84382274 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
84382223 ATTAGACCTG
* *
84382233 AATTTTAAAAATTAAAAAATTA
1 AATTCTAAAAATAAAAAAATTA
*
84382255 AATTCTAAATATAAAAAAAT
1 AATTCTAAAAATAAAAAAAT
84382275 ACCGTATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AATTCTAAAAATAAAAAAATTA
Found at i:84385313 original size:186 final size:178
Alignment explanation
Indices: 84384987--84385315 Score: 437
Period size: 186 Copynumber: 1.8 Consensus size: 178
84384977 TATAAGTTAC
* * *
84384987 ATTTGAGTTGTCACTTAACACTAAAAATTTAATGACTAAACTAATGAAAGGACATGATTGATACG
1 ATTTGAGTTGTCACTTAACACTAAAAATATAATGACTAAACTAATGAAAGGACATAATTGATACC
* * * * *
84385052 TTACTTGTTATACTCCAAGGTATTACTTTCATCGCAATGAAAGAGCCTACGTTGTTATTGACATT
66 TTACTTGTTATACTCCAAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTTGTTATTGACATT
84385117 TAGTAGGCAACGCAATGATACCATTGTCGCAAATCTACCGTGGACATG
131 TAGTAGGCAACGCAATGATACCATTGTCGCAAATCTACCGTGGACATG
* *
84385165 ATTTGAGTTGTCACTTAACACTCAAAAA-ATAATGGCTAAACTAATGAAATGACATAATTGATAC
1 ATTTGAGTTGTCACTTAACACT-AAAAATATAATGACTAAACTAATGAAAGGACATAATTGATAC
**
84385229 AATACTTACGATCCTTGTTATAC-CTTAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTTGT
65 ----CTT---A--CTTGTTATACTCCAAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTTGT
*
84385293 TGTTGACATTTAGTAGGCAACGC
121 TATTGACATTTAGTAGGCAACGC
84385316 CACAATGCAA
Statistics
Matches: 128, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
178 54 0.42
179 5 0.04
182 2 0.02
185 1 0.01
186 56 0.44
187 10 0.08
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31
Consensus pattern (178 bp):
ATTTGAGTTGTCACTTAACACTAAAAATATAATGACTAAACTAATGAAAGGACATAATTGATACC
TTACTTGTTATACTCCAAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTTGTTATTGACATT
TAGTAGGCAACGCAATGATACCATTGTCGCAAATCTACCGTGGACATG
Found at i:84386543 original size:3 final size:3
Alignment explanation
Indices: 84386535--84386563 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
84386525 ATTTATCTCT
84386535 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
84386564 ATATATAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:84389859 original size:29 final size:29
Alignment explanation
Indices: 84389790--84389859 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
84389780 CATATTTAAA
* *
84389790 AAATAAATAT-ATCAATTTATTTCTATATT
1 AAATAAATATAAT-TATTTATTTCTATAAT
*
84389819 AAATAAATATAATTATTTATTTTTATAAT
1 AAATAAATATAATTATTTATTTCTATAAT
*
84389848 ATATAAATATAA
1 AAATAAATATAA
84389860 AATAATATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 34 0.94
30 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
AAATAAATATAATTATTTATTTCTATAAT
Found at i:84393483 original size:2 final size:2
Alignment explanation
Indices: 84393476--84393503 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
84393466 ACAGGCCAAA
84393476 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84393504 TTTAAGTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84395517 original size:8 final size:9
Alignment explanation
Indices: 84395488--84395520 Score: 50
Period size: 10 Copynumber: 3.7 Consensus size: 9
84395478 ACCAGTTAAA
84395488 TTTTAATAT
1 TTTTAATAT
84395497 TTTTAAATAT
1 TTTT-AATAT
84395507 TTTTAAT-T
1 TTTTAATAT
84395515 TTTTAA
1 TTTTAA
84395521 AAATAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 7 0.30
9 7 0.30
10 9 0.39
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTAATAT
Found at i:84395551 original size:14 final size:13
Alignment explanation
Indices: 84395524--84395569 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
84395514 TTTTTAAAAA
84395524 TAAATA-AATATT
1 TAAATATAATATT
*
84395536 TAAATATAATTCTT
1 TAAATATAA-TATT
84395550 TAAA-A-AATATT
1 TAAATATAATATT
84395561 TAAATATAA
1 TAAATATAA
84395570 AATATACAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
11 7 0.25
12 9 0.32
13 5 0.18
14 7 0.25
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (13 bp):
TAAATATAATATT
Found at i:84395573 original size:32 final size:32
Alignment explanation
Indices: 84395510--84395575 Score: 80
Period size: 33 Copynumber: 2.1 Consensus size: 32
84395500 TAAATATTTT
* *
84395510 TAATTTTTTAAAAATAAATAAATATTTAAATA
1 TAATTTTTAAAAAATAAATAAATATTAAAATA
**
84395542 TAATTCTTTAAAAAATATTTAAATA-TAAAATA
1 TAATT-TTTAAAAAATAAATAAATATTAAAATA
84395574 TA
1 TA
84395576 CAATTTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (32 bp):
TAATTTTTAAAAAATAAATAAATATTAAAATA
Found at i:84396634 original size:23 final size:22
Alignment explanation
Indices: 84396589--84396632 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
84396579 CAATGCCAAT
84396589 TTTTAACAATAAAAATGATAAA
1 TTTTAACAATAAAAATGATAAA
*
84396611 TTTTAACAGTAAAAGA-GATAAA
1 TTTTAACAATAAAA-ATGATAAA
84396633 ATACAATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (22 bp):
TTTTAACAATAAAAATGATAAA
Found at i:84396768 original size:2 final size:2
Alignment explanation
Indices: 84396761--84396788 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
84396751 TGAGATTTTA
84396761 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
84396789 ATATATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:84414410 original size:17 final size:18
Alignment explanation
Indices: 84414385--84414424 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
84414375 ACAATATCGA
*
84414385 TAAAA-TTAAAAT-ATTT
1 TAAAATTTAAAATCAATT
84414401 TAAAATTTAAAATCAATT
1 TAAAATTTAAAATCAATT
84414419 TAAAAT
1 TAAAAT
84414425 ATAATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 5 0.24
17 7 0.33
18 9 0.43
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAAATTTAAAATCAATT
Found at i:84417646 original size:65 final size:63
Alignment explanation
Indices: 84417542--84417717 Score: 227
Period size: 58 Copynumber: 2.8 Consensus size: 63
84417532 TCTGATCAGT
* *
84417542 GACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAATGATAAGTGACAAGCGACAAGC
1 GACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC-ATGA-AAGTGACAAGCGACAAGC
* *
84417607 GACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC-----AGTGACAAGTGACAAGT
1 GACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCATGAAAGTGACAAGCGACAAGC
* *
84417665 GATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTGACAAGTGA
1 GACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA-TGA-AAGTGA
84417718 TAAATGTGAT
Statistics
Matches: 98, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
58 54 0.55
65 44 0.45
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.27
Consensus pattern (63 bp):
GACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCATGAAAGTGACAAGCGACAAGC
Found at i:84422028 original size:110 final size:111
Alignment explanation
Indices: 84421868--84422083 Score: 303
Period size: 110 Copynumber: 2.0 Consensus size: 111
84421858 GGACTTCCTA
* *
84421868 AAATGGTAAGTTTTCTATTTAATCCTTTAAATTTTTATGAAATTACATGTTAGTATAATGATAAG
1 AAATGGTAAGTTTTCCATTTAATCCTTTAAATTTTTATAAAATTACATGTTAGTATAATGATAA-
* ** *
84421933 A-TTTCACTTTTGCCCTCCCAATAATTAATGGTTCATCTTTGCTCTC
65 ATTTTCACCTTAACCCTCCCAATAATTAATGATTCATCTTTGCTCTC
* *
84421979 AAATGGT-AGATTTTCCATTTAGTGC-TTAAATTTTTATAAAATTACATGTTAGTATAATGATAA
1 AAATGGTAAG-TTTTCCATTTAATCCTTTAAATTTTTATAAAATTACATGTTAGTATAATGATAA
* *
84422042 ATTTTCACCTTAACCCTTCCAATAATTTATGATTCATCTTTG
65 ATTTTCACCTTAACCCTCCCAATAATTAATGATTCATCTTTG
84422084 GTCCCCTTAA
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
109 1 0.01
110 73 0.78
111 19 0.20
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.44
Consensus pattern (111 bp):
AAATGGTAAGTTTTCCATTTAATCCTTTAAATTTTTATAAAATTACATGTTAGTATAATGATAAA
TTTTCACCTTAACCCTCCCAATAATTAATGATTCATCTTTGCTCTC
Found at i:84422922 original size:102 final size:102
Alignment explanation
Indices: 84422815--84423018 Score: 408
Period size: 102 Copynumber: 2.0 Consensus size: 102
84422805 CCCATAAAAA
84422815 AAAAAACAACTATAACATTCATATAAGCATCAATCATCTGTACCAGCATTGTCATCACTAGGAAA
1 AAAAAACAACTATAACATTCATATAAGCATCAATCATCTGTACCAGCATTGTCATCACTAGGAAA
84422880 CAAAAAAGCTGAAATTCCTAACAAAAAAGAAACAATG
66 CAAAAAAGCTGAAATTCCTAACAAAAAAGAAACAATG
84422917 AAAAAACAACTATAACATTCATATAAGCATCAATCATCTGTACCAGCATTGTCATCACTAGGAAA
1 AAAAAACAACTATAACATTCATATAAGCATCAATCATCTGTACCAGCATTGTCATCACTAGGAAA
84422982 CAAAAAAGCTGAAATTCCTAACAAAAAAGAAACAATG
66 CAAAAAAGCTGAAATTCCTAACAAAAAAGAAACAATG
84423019 CTTGGTGTGC
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 102 1.00
ACGTcount: A:0.50, C:0.20, G:0.10, T:0.21
Consensus pattern (102 bp):
AAAAAACAACTATAACATTCATATAAGCATCAATCATCTGTACCAGCATTGTCATCACTAGGAAA
CAAAAAAGCTGAAATTCCTAACAAAAAAGAAACAATG
Found at i:84444368 original size:13 final size:14
Alignment explanation
Indices: 84444350--84444378 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
84444340 AAAAATTATT
84444350 AAAATTA-TTAAAA
1 AAAATTATTTAAAA
84444363 AAAATTATTTAAAA
1 AAAATTATTTAAAA
84444377 AA
1 AA
84444379 TGCTCTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAATTATTTAAAA
Found at i:84445845 original size:22 final size:22
Alignment explanation
Indices: 84445818--84445865 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
84445808 TTCCAACTAT
*
84445818 AAAAGTTTA-AAAGAGCTTAACA
1 AAAAGTATATAAA-AGCTTAACA
*
84445840 AAAAGTATATAAAAGCTTAATA
1 AAAAGTATATAAAAGCTTAACA
84445862 AAAA
1 AAAA
84445866 TAAGTATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.60, C:0.06, G:0.10, T:0.23
Consensus pattern (22 bp):
AAAAGTATATAAAAGCTTAACA
Found at i:84447159 original size:2 final size:2
Alignment explanation
Indices: 84447152--84447181 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
84447142 TGTCTATGTG
84447152 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
84447182 GCATGTAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:84447460 original size:2 final size:2
Alignment explanation
Indices: 84447455--84447479 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
84447445 GAAAAAAAAT
84447455 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
84447480 TTTCAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:84452018 original size:22 final size:23
Alignment explanation
Indices: 84451992--84452035 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
84451982 GATCTAGGGC
84451992 TTTTATGATGTTTT-TTTTTATT
1 TTTTATGATGTTTTATTTTTATT
* *
84452014 TTTTATTATTTTTTATTTTTAT
1 TTTTATGATGTTTTATTTTTAT
84452036 CTTTAGAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.80
Consensus pattern (23 bp):
TTTTATGATGTTTTATTTTTATT
Found at i:84452040 original size:22 final size:22
Alignment explanation
Indices: 84451993--84452040 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
84451983 ATCTAGGGCT
*
84451993 TTTATGATGTTTTTTTTTATTT
1 TTTATGATGTTTTTTTTTATTC
* *
84452015 TTTATTATTTTTTATTTTTA-TC
1 TTTATGATGTTTT-TTTTTATTC
84452037 TTTA
1 TTTA
84452041 GAACAATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (22 bp):
TTTATGATGTTTTTTTTTATTC
Found at i:84459002 original size:29 final size:29
Alignment explanation
Indices: 84458960--84459025 Score: 105
Period size: 29 Copynumber: 2.3 Consensus size: 29
84458950 AATTGAATAT
*
84458960 TTGAGTGACCATTTTGTAACTTTTCATAA
1 TTGAGTGACCATTTTATAACTTTTCATAA
*
84458989 TTGAGTGACCATTTTATAGCTTTTCATAA
1 TTGAGTGACCATTTTATAACTTTTCATAA
*
84459018 TTAAGTGA
1 TTGAGTGA
84459026 TAAAAAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (29 bp):
TTGAGTGACCATTTTATAACTTTTCATAA
Found at i:84460040 original size:2 final size:2
Alignment explanation
Indices: 84460033--84460065 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
84460023 AGAATAAAAC
84460033 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
84460066 GGTCTCACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:84463424 original size:35 final size:35
Alignment explanation
Indices: 84463363--84463444 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 35
84463353 TAAAATAAAC
* *
84463363 ATTAAAAAAATGT-TAAGATAACTAAATATAAAAT
1 ATTAAAAAAATATATAAAATAACTAAATATAAAAT
* * *
84463397 ATTAAAAAAATATATAAAATCATTAAATATTAAAT
1 ATTAAAAAAATATATAAAATAACTAAATATAAAAT
* *
84463432 -TTAAGATAATATA
1 ATTAAAAAAATATA
84463445 AATATAAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 23 0.57
35 17 0.43
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (35 bp):
ATTAAAAAAATATATAAAATAACTAAATATAAAAT
Found at i:84469232 original size:27 final size:27
Alignment explanation
Indices: 84469202--84469265 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
84469192 AGGTCCAACA
84469202 CCAGGAGCTCCAGGTGGAGGTGGAGGT
1 CCAGGAGCTCCAGGTGGAGGTGGAGGT
84469229 CCAGGAGCTCCAGGTGGAGGTGGAGGT
1 CCAGGAGCTCCAGGTGGAGGTGGAGGT
*
84469256 CCTGGAGCTC
1 CCAGGAGCTC
84469266 GACCTCCAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.17, C:0.22, G:0.45, T:0.16
Consensus pattern (27 bp):
CCAGGAGCTCCAGGTGGAGGTGGAGGT
Found at i:84474906 original size:28 final size:27
Alignment explanation
Indices: 84474854--84474908 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
84474844 TTCAATCTTC
* *
84474854 TTAAGAAAAAAATTAAAATTAAAATAA
1 TTAAGAAAAAAAATAAAATCAAAATAA
84474881 TTAAGAAAAAATAATAAAA-CACAAATAA
1 TTAAGAAAAAA-AATAAAATCA-AAATAA
84474909 ATAAATAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.22
Consensus pattern (27 bp):
TTAAGAAAAAAAATAAAATCAAAATAA
Found at i:84482181 original size:6 final size:6
Alignment explanation
Indices: 84482173--84482211 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
84482163 AAAATGCATA
*
84482173 TATATA TATATG TATATG TATATG TATATG TATATG TAT
1 TATATG TATATG TATATG TATATG TATATG TATATG TAT
84482212 TTTTTTTAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:84484667 original size:25 final size:25
Alignment explanation
Indices: 84484615--84484667 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
84484605 ATTTAAAATA
* * *
84484615 ATAAAATTTAATTTAAAAATTCTTT
1 ATAAAATTTAATTTAAAAAATATAT
*
84484640 ATAAAATTTATTTTAAAAAATATAT
1 ATAAAATTTAATTTAAAAAATATAT
84484665 ATA
1 ATA
84484668 TTATGCTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATAAAATTTAATTTAAAAAATATAT
Found at i:84486557 original size:6 final size:6
Alignment explanation
Indices: 84486546--84486581 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
84486536 AATATTGATA
84486546 ATTTAT ATTTAT ATTTAT ATTTTATT ATTTAT ATTT
1 ATTTAT ATTTAT ATTTAT A-TTTA-T ATTTAT ATTT
84486582 GTTTTATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 18 0.64
7 8 0.29
8 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
ATTTAT
Found at i:84486576 original size:14 final size:13
Alignment explanation
Indices: 84486546--84486581 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
84486536 AATATTGATA
84486546 ATTTATA-TTTAT
1 ATTTATATTTTAT
84486558 ATTTATATTTTATT
1 ATTTATATTTTA-T
84486572 ATTTATATTT
1 ATTTATATTT
84486582 GTTTTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 7 0.32
13 4 0.18
14 11 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTATATTTTAT
Found at i:84486579 original size:26 final size:25
Alignment explanation
Indices: 84486546--84486594 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
84486536 AATATTGATA
84486546 ATTTATATTTATATTTATATTTTATT
1 ATTTATATTTAT-TTTATATTTTATT
* *
84486572 ATTTATATTTGTTTTATTTTTTA
1 ATTTATATTTATTTTATATTTTA
84486595 ATAGCGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (25 bp):
ATTTATATTTATTTTATATTTTATT
Found at i:84486891 original size:9 final size:9
Alignment explanation
Indices: 84486839--84486896 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
84486829 TTTAGAAAAA
*
84486839 TAAAAAAAT
1 TAAAAATAT
*
84486848 GAAAAATCAT
1 TAAAAAT-AT
84486858 TAAAAATAT
1 TAAAAATAT
* *
84486867 TTAAAATTT
1 TAAAAATAT
84486876 TAAAAAATAT
1 T-AAAAATAT
84486886 TAAAAAGTAT
1 TAAAAA-TAT
84486896 T
1 T
84486897 TTTTAAGTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
9 20 0.51
10 19 0.49
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (9 bp):
TAAAAATAT
Found at i:84487534 original size:23 final size:23
Alignment explanation
Indices: 84487491--84487535 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
84487481 CCAATTATTA
*
84487491 ATGCCATTTCAACATCTTTTTTC
1 ATGCCATTTCAACATCGTTTTTC
*
84487514 ATGCCATTTGACACAT-GTTTTT
1 ATGCCATTTCA-ACATCGTTTTT
84487536 GATAATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.22, C:0.22, G:0.09, T:0.47
Consensus pattern (23 bp):
ATGCCATTTCAACATCGTTTTTC
Found at i:84490825 original size:5 final size:5
Alignment explanation
Indices: 84490815--84490848 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
84490805 AAAATTTATA
84490815 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
84490849 AAATCAGACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:84513988 original size:16 final size:15
Alignment explanation
Indices: 84513967--84514000 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
84513957 TATACATTAG
84513967 TAAAAAAATTAAATATT
1 TAAAAAAA-TAAA-ATT
84513984 TAAAAAAATAAAATT
1 TAAAAAAATAAAATT
84513999 TA
1 TA
84514001 TCCAGCAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 4 0.24
17 8 0.47
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAAAAATAAAATT
Found at i:84516518 original size:23 final size:23
Alignment explanation
Indices: 84516492--84516573 Score: 78
Period size: 23 Copynumber: 3.6 Consensus size: 23
84516482 GAGAAAAATC
*
84516492 ATTTTATCTTTTTAATTTCTTTT
1 ATTTTATCTTTTTAATTTCATTT
**** *
84516515 ATTTTATCTTTTTAAGAAAAATT
1 ATTTTATCTTTTTAATTTCATTT
*
84516538 ATTTTAT-TTTTTAATTTCCTTT
1 ATTTTATCTTTTTAATTTCATTT
84516560 ATTTT-TCTCTTTTA
1 ATTTTATCT-TTTTA
84516574 GAATGAGTTT
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
21 1 0.02
22 15 0.33
23 29 0.64
ACGTcount: A:0.23, C:0.09, G:0.01, T:0.67
Consensus pattern (23 bp):
ATTTTATCTTTTTAATTTCATTT
Found at i:84516561 original size:45 final size:46
Alignment explanation
Indices: 84516483--84516573 Score: 141
Period size: 45 Copynumber: 2.0 Consensus size: 46
84516473 GATTTTGCAG
*
84516483 AGAAAAATCATTTTATCTTTTTAATTTCTTTTATTTTATCT-TTTTA
1 AGAAAAATCATTTTATCTTTTTAATTTCCTTTATTTT-TCTCTTTTA
*
84516529 AGAAAAATTATTTTAT-TTTTTAATTTCCTTTATTTTTCTCTTTTA
1 AGAAAAATCATTTTATCTTTTTAATTTCCTTTATTTTTCTCTTTTA
84516574 GAATGAGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
44 3 0.07
45 24 0.57
46 15 0.36
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (46 bp):
AGAAAAATCATTTTATCTTTTTAATTTCCTTTATTTTTCTCTTTTA
Found at i:84530108 original size:18 final size:18
Alignment explanation
Indices: 84530082--84530118 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
84530072 ATTTTTCCCT
* *
84530082 TGCCTAGTAAAACAGAAA
1 TGCCCAGTAAAACACAAA
84530100 TGCCCAGTAAAACACAAA
1 TGCCCAGTAAAACACAAA
84530118 T
1 T
84530119 TACTGATTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.22, G:0.14, T:0.16
Consensus pattern (18 bp):
TGCCCAGTAAAACACAAA
Found at i:84530197 original size:59 final size:59
Alignment explanation
Indices: 84530105--84530223 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
84530095 AGAAATGCCC
84530105 AGTAAAACACAAATTACTGATTAGCTTCAGAAGATTAGGTAACATATCAATGTCAATGA
1 AGTAAAACACAAATTACTGATTAGCTTCAGAAGATTAGGTAACATATCAATGTCAATGA
84530164 AGTAAAACACAAATTACTGATTAGCTTCAGAAGATTAGGTAACATATCAATGTCAATGA
1 AGTAAAACACAAATTACTGATTAGCTTCAGAAGATTAGGTAACATATCAATGTCAATGA
84530223 A
1 A
84530224 CTCCAACTAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (59 bp):
AGTAAAACACAAATTACTGATTAGCTTCAGAAGATTAGGTAACATATCAATGTCAATGA
Found at i:84532512 original size:23 final size:23
Alignment explanation
Indices: 84532473--84532522 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
84532463 TCAAATTTCA
* *
84532473 AGTTAATTGAATCAAGTTATTCG
1 AGTTAATCGAATCAAGTAATTCG
*
84532496 AGTTAAATCGAAT-AAGTAATTTG
1 AGTT-AATCGAATCAAGTAATTCG
84532519 AGTT
1 AGTT
84532523 TCAAGTTCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.38
Consensus pattern (23 bp):
AGTTAATCGAATCAAGTAATTCG
Found at i:84537487 original size:30 final size:30
Alignment explanation
Indices: 84537429--84537510 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
84537419 TCTAAAATTT
* * *
84537429 TTTTGAAATTTTTATTTAGAACCCTTCAAAAA
1 TTTTGAAAATTTTAATTA-AA-TCTTCAAAAA
* *
84537461 TTTT-AAAATTTCTCATTAAATCTTCAAAAG
1 TTTTGAAAATTT-TAATTAAATCTTCAAAAA
84537491 TTTTGAAAATTTTAATTAAA
1 TTTTGAAAATTTTAATTAAA
84537511 CCTCTTAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
30 19 0.45
31 15 0.36
32 8 0.19
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (30 bp):
TTTTGAAAATTTTAATTAAATCTTCAAAAA
Found at i:84540220 original size:172 final size:172
Alignment explanation
Indices: 84539934--84540277 Score: 661
Period size: 172 Copynumber: 2.0 Consensus size: 172
84539924 ATTGGAACTA
84539934 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
1 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
*
84539999 ATGTTTCGTTTTGATGAGATTATGAACATCATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
66 ATGTTTCGTTTTGATGAGATTATGAACATAATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
*
84540064 TTTGAAGGTATACTTCTACGGGAATTTTTTGTTGCTTCGATG
131 TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
84540106 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
1 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
*
84540171 ATGTTTCGTTTTGATGGGATTATGAACATAATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
66 ATGTTTCGTTTTGATGAGATTATGAACATAATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
84540236 TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
131 TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
84540278 CACTAGAGGT
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
172 169 1.00
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (172 bp):
GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
ATGTTTCGTTTTGATGAGATTATGAACATAATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
Found at i:84552552 original size:18 final size:19
Alignment explanation
Indices: 84552521--84552556 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
84552511 CAATAAACAA
*
84552521 TTTTAAATTATAAAAATAT
1 TTTTAAAATATAAAAATAT
84552540 TTTTAAAAT-TAAAAATA
1 TTTTAAAATATAAAAATA
84552557 AAAAAAGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TTTTAAAATATAAAAATAT
Found at i:84552750 original size:17 final size:18
Alignment explanation
Indices: 84552728--84552766 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
84552718 TTTAACTTAA
84552728 AAAATAAAGA-AAAAATT
1 AAAATAAAGATAAAAATT
* *
84552745 AAAATAAATATAAATATT
1 AAAATAAAGATAAAAATT
84552763 AAAA
1 AAAA
84552767 GTTAAATTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (18 bp):
AAAATAAAGATAAAAATT
Found at i:84552883 original size:24 final size:24
Alignment explanation
Indices: 84552824--84552884 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
84552814 CATCCTAATG
*
84552824 AATTACTTAAAAAAGGTATGAAAT
1 AATTACTTAAAAAAAGTATGAAAT
**
84552848 --TTACACCAAAAAAAAGTATGAAAT
1 AATT--ACTTAAAAAAAGTATGAAAT
84552872 AATTACTTAAAAA
1 AATTACTTAAAAA
84552885 TACAGCTTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
22 2 0.07
24 24 0.86
26 2 0.07
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.26
Consensus pattern (24 bp):
AATTACTTAAAAAAAGTATGAAAT
Found at i:84555854 original size:13 final size:15
Alignment explanation
Indices: 84555824--84555860 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 15
84555814 TATAATCTGG
84555824 AAAAATATAAATTAT
1 AAAAATATAAATTAT
84555839 AAAAATA-AAATT-T
1 AAAAATATAAATTAT
84555852 AAAAA-ATAA
1 AAAAATATAA
84555861 GATAATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 1 0.05
13 8 0.38
14 5 0.24
15 7 0.33
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAAATATAAATTAT
Found at i:84555860 original size:14 final size:14
Alignment explanation
Indices: 84555824--84555856 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
84555814 TATAATCTGG
84555824 AAAAATATAAATTAT
1 AAAAATA-AAATTAT
84555839 AAAAATAAAATT-T
1 AAAAATAAAATTAT
84555852 AAAAA
1 AAAAA
84555857 ATAAGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.33
14 5 0.28
15 7 0.39
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAAATAAAATTAT
Found at i:84556110 original size:29 final size:30
Alignment explanation
Indices: 84556078--84556135 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
84556068 AAAAGTTAAT
84556078 TTTTTTAAAATTTTATAT-AATAT-ATATAA
1 TTTTTTAAAATTTTA-ATCAATATAATATAA
* *
84556107 TTTTTTACATTTTTAATCAATATAATATA
1 TTTTTTAAAATTTTAATCAATATAATATA
84556136 TAATATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.08
29 18 0.72
30 5 0.20
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (30 bp):
TTTTTTAAAATTTTAATCAATATAATATAA
Found at i:84556346 original size:27 final size:29
Alignment explanation
Indices: 84556277--84556346 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 29
84556267 TAATGTTTTA
* *
84556277 TAATA-TTTAAATATTTAATATTATAATT
1 TAATATTTTTAATTTTTAATATTATAATT
* *
84556305 T-TTATTTGTTTATTTTTAAT-TTA-AATT
1 TAATATTT-TTAATTTTTAATATTATAATT
84556332 TAATATTTTTAATTT
1 TAATATTTTTAATTT
84556347 AAAAAAATCT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
27 13 0.39
28 11 0.33
29 9 0.27
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (29 bp):
TAATATTTTTAATTTTTAATATTATAATT
Found at i:84557941 original size:16 final size:17
Alignment explanation
Indices: 84557920--84557952 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
84557910 AACTAAATTT
*
84557920 AATTT-ATTTTTTTTAA
1 AATTTAATTTTTATTAA
84557936 AATTTAATTTTTATTAA
1 AATTTAATTTTTATTAA
84557953 TTTCTAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
AATTTAATTTTTATTAA
Found at i:84573879 original size:18 final size:20
Alignment explanation
Indices: 84573842--84573880 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
84573832 TTGTTATTTT
*
84573842 TACATTGTTATTATTATATA
1 TACATTGTTATTAGTATATA
84573862 TACA-TGTT-TTAGTATATA
1 TACATTGTTATTAGTATATA
84573880 T
1 T
84573881 GTATATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 4 0.22
20 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (20 bp):
TACATTGTTATTAGTATATA
Found at i:84574137 original size:20 final size:20
Alignment explanation
Indices: 84574114--84574151 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
84574104 TGTTATATAC
*
84574114 GTATATATTATGTGTATTTT
1 GTATATATTATGTATATTTT
84574134 GTATATATTATGTATATT
1 GTATATATTATGTATATT
84574152 ATTATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (20 bp):
GTATATATTATGTATATTTT
Found at i:84574234 original size:21 final size:21
Alignment explanation
Indices: 84574205--84574244 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
84574195 ATTCATGTAT
*
84574205 TTTATTATATATGTATATATC
1 TTTAATATATATGTATATATC
*
84574226 TTTAATATATATTTATATA
1 TTTAATATATATGTATATA
84574245 AGTATATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTAATATATATGTATATATC
Found at i:84574344 original size:24 final size:25
Alignment explanation
Indices: 84574317--84574367 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
84574307 ATGTGTGTAC
*
84574317 ATATTATGTAAATGTTTTA-ATATT
1 ATATTATATAAATGTTTTATATATT
**
84574341 ATATTATATGTATGTTTTATATATT
1 ATATTATATAAATGTTTTATATATT
84574366 AT
1 AT
84574368 GAACATGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (25 bp):
ATATTATATAAATGTTTTATATATT
Found at i:84580365 original size:93 final size:93
Alignment explanation
Indices: 84580206--84580392 Score: 365
Period size: 93 Copynumber: 2.0 Consensus size: 93
84580196 TTAGAGTGGG
*
84580206 ATTGGATTGGAAGTCCAGTGAGAATGCCACTGCCGACATCAGAAGGCATTACCCCAAGCAAGAAC
1 ATTGGATTCGAAGTCCAGTGAGAATGCCACTGCCGACATCAGAAGGCATTACCCCAAGCAAGAAC
84580271 AAGGCCCATTGTGTGCCAAAGCCAAGGA
66 AAGGCCCATTGTGTGCCAAAGCCAAGGA
84580299 ATTGGATTCGAAGTCCAGTGAGAATGCCACTGCCGACATCAGAAGGCATTACCCCAAGCAAGAAC
1 ATTGGATTCGAAGTCCAGTGAGAATGCCACTGCCGACATCAGAAGGCATTACCCCAAGCAAGAAC
84580364 AAGGCCCATTGTGTGCCAAAGCCAAGGA
66 AAGGCCCATTGTGTGCCAAAGCCAAGGA
84580392 A
1 A
84580393 GAAAGGCATT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.16
Consensus pattern (93 bp):
ATTGGATTCGAAGTCCAGTGAGAATGCCACTGCCGACATCAGAAGGCATTACCCCAAGCAAGAAC
AAGGCCCATTGTGTGCCAAAGCCAAGGA
Found at i:84590501 original size:14 final size:14
Alignment explanation
Indices: 84590482--84590508 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84590472 ATAAGTCCCT
84590482 ATAAAGAGTATACA
1 ATAAAGAGTATACA
84590496 ATAAAGAGTATAC
1 ATAAAGAGTATAC
84590509 CAATTACTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (14 bp):
ATAAAGAGTATACA
Found at i:84601010 original size:19 final size:20
Alignment explanation
Indices: 84600970--84601022 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
84600960 AATTAAGTTT
**
84600970 ATTTAAATTAAAAATATTAA
1 ATTTAAATTAAAAATAAGAA
84600990 ATTTAAA-TAAAAATAAGAA
1 ATTTAAATTAAAAATAAGAA
84601009 ATTATAATATTAAA
1 ATT-TAA-ATTAAA
84601023 TACTTAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 13 0.46
20 10 0.36
21 1 0.04
22 4 0.14
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
ATTTAAATTAAAAATAAGAA
Found at i:84601268 original size:20 final size:17
Alignment explanation
Indices: 84601252--84601300 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 17
84601242 TTAAAAAGTC
84601252 AAAATAATATATAAAAATT
1 AAAA-AATATATAAAAA-T
*
84601271 GAAAAATATTATAAAAAT
1 AAAAAATA-TATAAAAAT
84601289 AAAAAATATATA
1 AAAAAATATATA
84601301 TTTAAATTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 4 0.15
18 12 0.44
19 11 0.41
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (17 bp):
AAAAAATATATAAAAAT
Found at i:84602942 original size:31 final size:31
Alignment explanation
Indices: 84602907--84602970 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
84602897 ACTTAGCAAC
84602907 TCTGTGACTTAAATAAAAACTTTTAAATAAT
1 TCTGTGACTTAAATAAAAACTTTTAAATAAT
* *
84602938 TCTGTGATTTAAATAAAAATTTTTAAATAAT
1 TCTGTGACTTAAATAAAAACTTTTAAATAAT
84602969 TC
1 TC
84602971 AATAATCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (31 bp):
TCTGTGACTTAAATAAAAACTTTTAAATAAT
Found at i:84609107 original size:17 final size:18
Alignment explanation
Indices: 84609076--84609113 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
84609066 ACTTTCTAAA
84609076 AATTTAAAATAAAAT-CT
1 AATTTAAAATAAAATACT
84609093 AATTTAAAA-ATAAATACT
1 AATTTAAAATA-AAATACT
84609111 AAT
1 AAT
84609114 ACTACAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.05
17 13 0.68
18 5 0.26
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (18 bp):
AATTTAAAATAAAATACT
Found at i:84614519 original size:33 final size:33
Alignment explanation
Indices: 84614477--84614600 Score: 230
Period size: 33 Copynumber: 3.8 Consensus size: 33
84614467 TTTCTTCTTG
*
84614477 ACATTCCAGCTACTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
84614510 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
*
84614543 ACATTCCAGCTCCCGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
84614576 ACATTCCAGCTCCTGTCCAGCAACC
1 ACATTCCAGCTCCTGTCCAGCAACC
84614601 TGAAACAGAG
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.30, C:0.43, G:0.10, T:0.18
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
Found at i:84637982 original size:18 final size:18
Alignment explanation
Indices: 84637959--84637994 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
84637949 CTGAAAATAA
84637959 ACAAGAACATTGATCTCT
1 ACAAGAACATTGATCTCT
*
84637977 ACAAGAATATTGATCTCT
1 ACAAGAACATTGATCTCT
84637995 TACGAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (18 bp):
ACAAGAACATTGATCTCT
Found at i:84638103 original size:89 final size:90
Alignment explanation
Indices: 84638003--84638200 Score: 319
Period size: 89 Copynumber: 2.2 Consensus size: 90
84637993 CTTACGAAAA
*
84638003 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGGTTGGTAAGCTATAGGGATTT
1 ATGTATTAAACATATTGATTATATTGAAATCATTTACAAATATGGTTGGTAAGCTATAGGGATTT
*
84638068 CACTTCTT-TTTGTTA-TATATATGT
66 CACTTCTTCTTT-TTATTATATATAT
84638092 ATGTATTAAACATATTGATTATATTGAAATCATTTACAAATATGGTTGGTAAGCTATAGGGATTT
1 ATGTATTAAACATATTGATTATATTGAAATCATTTACAAATATGGTTGGTAAGCTATAGGGATTT
*
84638157 CACTTCTTCCTTTTTATTTATGTATAT
66 CACTTCTT-CTTTTTA-TTATATATAT
*
84638184 ATGTATTTAACATATTG
1 ATGTATTAAACATATTG
84638201 TTTTTTCATT
Statistics
Matches: 101, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
89 72 0.71
90 3 0.03
91 3 0.03
92 23 0.23
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (90 bp):
ATGTATTAAACATATTGATTATATTGAAATCATTTACAAATATGGTTGGTAAGCTATAGGGATTT
CACTTCTTCTTTTTATTATATATAT
Found at i:84646604 original size:111 final size:115
Alignment explanation
Indices: 84646469--84646788 Score: 375
Period size: 122 Copynumber: 2.7 Consensus size: 115
84646459 GCAATATTGC
* *
84646469 TAAATCTAGTTTTAGCTATCATTTTGGAATCATATGTGATTTTCTAATATAAACCTATGGAAAAT
1 TAAATCTAGTTCTAGCTATCATTTTGGAATCATATGTGATTTTGT-ATATAAACCTATGG-AAAT
*
84646534 GCTATGGTATTGGACTGCACTTA-ATC-CTCTATGC-AT-G-T-TGTATGGT
64 GCTATGGTATTGGACTGCACTTACATCTATCTATGCAATGGTTATGTATGGT
* * *
84646580 TAAATATAGTTCTAGCTATCATTTTGGAATCATATATGATTTTGTATATAAACCTATAGTAAATG
1 TAAATCTAGTTCTAGCTATCATTTTGGAATCATATGTGATTTTGTATATAAACCTAT-GGAAATG
* *
84646645 CTATGGTATTGGATTGCACTTAGTCATCTATGTATGCAGTATGGTTAAATGTATGGT
65 CTATGGTATTGGACTGCACTTA--CATCTATCTATGCA--ATGGTT--ATGTATGGT
* * *
84646702 TAAATCTAGTTCTAGATATCATTTTGGAATCAT-TGACGATTTTGTTTATAAACCTATAGGAAAT
1 TAAATCTAGTTCTAGCTATCATTTTGGAATCATATG-TGATTTTGTATATAAACCTAT-GGAAAT
* *
84646766 GCTATGATATTGGACTGCTCTTA
64 GCTATGGTATTGGACTGCACTTA
84646789 GTGCTCGTTT
Statistics
Matches: 178, Mismatches: 17, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
110 38 0.21
111 42 0.24
113 3 0.02
114 6 0.03
117 2 0.01
118 1 0.01
119 1 0.01
121 1 0.01
122 84 0.47
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (115 bp):
TAAATCTAGTTCTAGCTATCATTTTGGAATCATATGTGATTTTGTATATAAACCTATGGAAATGC
TATGGTATTGGACTGCACTTACATCTATCTATGCAATGGTTATGTATGGT
Found at i:84649832 original size:21 final size:21
Alignment explanation
Indices: 84649808--84649850 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
84649798 AGATTCATCA
*
84649808 ATATTCTT-TTTGAATTTGTAT
1 ATATTCTTATTTAAATTT-TAT
*
84649829 ATATTTTTATTTAAATTTTAT
1 ATATTCTTATTTAAATTTTAT
84649850 A
1 A
84649851 AAAAATTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (21 bp):
ATATTCTTATTTAAATTTTAT
Found at i:84654655 original size:31 final size:31
Alignment explanation
Indices: 84654612--84654672 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
84654602 CTAGGCACCT
* *
84654612 AATTGAATATT-AAAGTAAAATTTAGATACTA
1 AATTAAATATTAAAACT-AAATTTAGATACTA
84654643 AATTAAATATTAAAACTAAATTTAGATACT
1 AATTAAATATTAAAACTAAATTTAGATACT
84654673 CAACTGTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (31 bp):
AATTAAATATTAAAACTAAATTTAGATACTA
Found at i:84658952 original size:30 final size:30
Alignment explanation
Indices: 84658856--84658942 Score: 138
Period size: 30 Copynumber: 2.9 Consensus size: 30
84658846 ATCGACCGCA
*
84658856 GGGAGAAACCAAGGAAAAGCACCGATACCC
1 GGGAAAAACCAAGGAAAAGCACCGATACCC
* *
84658886 GGGACAAGCCAAGGAAAAGCACCGATACCC
1 GGGAAAAACCAAGGAAAAGCACCGATACCC
*
84658916 GGGAAAAACCAAGGAAAAGCATCGATA
1 GGGAAAAACCAAGGAAAAGCACCGATA
84658943 GGCCTGAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.45, C:0.24, G:0.26, T:0.05
Consensus pattern (30 bp):
GGGAAAAACCAAGGAAAAGCACCGATACCC
Found at i:84662498 original size:30 final size:29
Alignment explanation
Indices: 84662464--84662535 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
84662454 TGTTACGAGT
* * * *
84662464 GGACTTACTTGATTCTTTTTAATAGTATAA
1 GGACTAACTTGATTC-ATTTAATAATAGAA
* *
84662494 GGACTAAATTGATTCATTTAATAATAGAG
1 GGACTAACTTGATTCATTTAATAATAGAA
84662523 GGACTAACTTGAT
1 GGACTAACTTGAT
84662536 CTAGTCTATA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
29 22 0.63
30 13 0.37
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.39
Consensus pattern (29 bp):
GGACTAACTTGATTCATTTAATAATAGAA
Found at i:84685164 original size:18 final size:17
Alignment explanation
Indices: 84685135--84685184 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
84685125 ACAACTTTTA
84685135 AAATTAATAATTATAATTT
1 AAATT-ATAATTAT-ATTT
*
84685154 AAATTATAATTATTTTT
1 AAATTATAATTATATTT
84685171 AAATATATAATTAT
1 AAAT-TATAATTAT
84685185 CATAAATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 7 0.24
18 17 0.59
19 5 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAATTATAATTATATTT
Found at i:84685702 original size:21 final size:20
Alignment explanation
Indices: 84685678--84685721 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
84685668 TTATTTTTAA
*
84685678 ATATTTATATTATAATATGAT
1 ATATTTATATTAT-ATATCAT
*
84685699 ATATTTATTTTATATATCAT
1 ATATTTATATTATATATCAT
84685719 ATA
1 ATA
84685722 AATTACCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
ATATTTATATTATATATCAT
Found at i:84685748 original size:24 final size:26
Alignment explanation
Indices: 84685703--84685750 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
84685693 TATGATATAT
* *
84685703 TTATTTTATATATCATATAAATTACC
1 TTATTTTATATATAATAAAAATTACC
84685729 TTATTTTATA-A-AATAAAAATTA
1 TTATTTTATATATAATAAAAATTA
84685751 TCATATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 1 0.05
26 10 0.50
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (26 bp):
TTATTTTATATATAATAAAAATTACC
Found at i:84688820 original size:20 final size:20
Alignment explanation
Indices: 84688795--84688834 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
84688785 TAGCTTTTGC
84688795 ATAATTAGAGATGTATGCCT
1 ATAATTAGAGATGTATGCCT
84688815 ATAATTAGAGATGTATGCCT
1 ATAATTAGAGATGTATGCCT
84688835 TTTCACTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
ATAATTAGAGATGTATGCCT
Found at i:84699035 original size:6 final size:6
Alignment explanation
Indices: 84699024--84699053 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
84699014 AACCATGAAT
*
84699024 CTAGCA CTAGCA CTAGCA CTAGCA CAAGCA
1 CTAGCA CTAGCA CTAGCA CTAGCA CTAGCA
84699054 ATGGAAGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.37, C:0.33, G:0.17, T:0.13
Consensus pattern (6 bp):
CTAGCA
Found at i:84706184 original size:33 final size:32
Alignment explanation
Indices: 84706125--84706226 Score: 107
Period size: 33 Copynumber: 3.2 Consensus size: 32
84706115 ACTTGAGGTG
84706125 TACATTCCTTTCCAAATGATACACACAAAGTA
1 TACATTCCTTTCCAAATGATACACACAAAGTA
* * * *
84706157 TACATTTCCTTTTCATATGGTATACACAAAGTA
1 TACA-TTCCTTTCCAAATGATACACACAAAGTA
* * * *
84706190 TACCTAACCTTTCCAAGTG-TACACACAAAGTG
1 TACAT-TCCTTTCCAAATGATACACACAAAGTA
84706222 TACAT
1 TACAT
84706227 AACTTTTTCA
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
32 20 0.36
33 36 0.64
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (32 bp):
TACATTCCTTTCCAAATGATACACACAAAGTA
Found at i:84706239 original size:32 final size:32
Alignment explanation
Indices: 84706144--84706244 Score: 105
Period size: 33 Copynumber: 3.1 Consensus size: 32
84706134 TTCCAAATGA
**
84706144 TACACACAAAGTATACATTTCCTTTTCATA-TGG
1 TACACACAAAGTATACATAACCTTTTCA-AGT-G
* * *
84706177 TATACACAAAGTATACCTAACCTTTCCAAGTG
1 TACACACAAAGTATACATAACCTTTTCAAGTG
* *
84706209 TACACACAAAGTGTACATAACTTTTTCAAGTTG
1 TACACACAAAGTATACATAACCTTTTCAAG-TG
84706242 TAC
1 TAC
84706245 CATTTGCGTA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
32 27 0.48
33 29 0.52
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.33
Consensus pattern (32 bp):
TACACACAAAGTATACATAACCTTTTCAAGTG
Found at i:84714012 original size:24 final size:25
Alignment explanation
Indices: 84713967--84714015 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
84713957 CCATATTAAT
*
84713967 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAATAT-ATAAAACAAATATA
84713993 TTTAAAAATAT-TAAAACAAATAT
1 TTTAAAAATATATAAAACAAATAT
84714016 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.50
26 11 0.50
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (25 bp):
TTTAAAAATATATAAAACAAATATA
Done.