Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 30 of 292
Found at i:7917815 original size:2 final size:2
Alignment explanation
Indices: 7917803--7917842 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
7917793 ATTTAGGTTT
7917803 TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7917843 ATGATTAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:7922541 original size:2 final size:2
Alignment explanation
Indices: 7922534--7922578 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
7922524 ATTTAGGTTT
7922534 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7922575 TA TA
1 TA TA
7922579 ATGATTATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7924588 original size:39 final size:40
Alignment explanation
Indices: 7924481--7924591 Score: 111
Period size: 38 Copynumber: 2.8 Consensus size: 40
7924471 GACCTCGAGT
* **
7924481 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAGC
** ** *
7924522 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
7924560 CGATGAGACACTGGGTGTCAACTATTACTTCG
1 CGATGAGACACTGGGTGTCAACTATTACTTCG
7924592 AACTATCCGA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
38 19 0.34
39 19 0.34
40 1 0.02
41 15 0.27
42 2 0.04
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
Found at i:7924602 original size:39 final size:39
Alignment explanation
Indices: 7924481--7924615 Score: 98
Period size: 39 Copynumber: 3.4 Consensus size: 39
7924471 GACCTCGAGT
* * *
7924481 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATA-GATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTC-GA-ACTATC
** ** * *
7924522 CGATGAGGTACTGGGTACCAACT-TTACTTCG-GCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
7924560 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
**
7924599 CGATGAGGGACTGGGTG
1 CGATGAGACACTGGGTG
7924616 CCATATTGGT
Statistics
Matches: 72, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
37 1 0.01
38 20 0.28
39 30 0.42
40 4 0.06
41 15 0.21
42 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
Found at i:7930047 original size:18 final size:17
Alignment explanation
Indices: 7930026--7930062 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
7930016 ATTCTACCTC
7930026 TACGTCTACGTCTACTGT
1 TACGTCTACGTCTA-TGT
*
7930044 TACGTCTACTTCTATGT
1 TACGTCTACGTCTATGT
7930061 TA
1 TA
7930063 ATTGGCTCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (17 bp):
TACGTCTACGTCTATGT
Found at i:7930695 original size:36 final size:36
Alignment explanation
Indices: 7930655--7930726 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
7930645 GGTGCCCCAA
*
7930655 ACCCAGTCGGGACAGCCCGATCTGAGTTTCAAACGT
1 ACCCAGTCGGGACAGCCCGATCTAAGTTTCAAACGT
7930691 ACCCAGTCGGGACAGCCCGATCTAAGTTTCAAACGT
1 ACCCAGTCGGGACAGCCCGATCTAAGTTTCAAACGT
7930727 CTCATTAGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (36 bp):
ACCCAGTCGGGACAGCCCGATCTAAGTTTCAAACGT
Found at i:7932583 original size:17 final size:17
Alignment explanation
Indices: 7932531--7932713 Score: 98
Period size: 17 Copynumber: 10.6 Consensus size: 17
7932521 AGGTCATATG
*
7932531 ATAATAGGGTTCGCATAT
1 ATAA-AGGGTTCGCACAT
* **
7932549 ATAGTAGAGGTTTACACAT
1 ATA-AAG-GGTTCGCACAT
*
7932568 ATAAAGGGTTCGCACAA
1 ATAAAGGGTTCGCACAT
* *
7932585 ATGGAA-GGTTTGCACAT
1 AT-AAAGGGTTCGCACAT
**
7932602 ATGGAGGGTTCGCACAT
1 ATAAAGGGTTCGCACAT
* * *
7932619 ATAACGAGTTCACACAT
1 ATAAAGGGTTCGCACAT
** * *
7932636 ATGGAGGGTTCACACAA
1 ATAAAGGGTTCGCACAT
***
7932653 ATGGTGGGTTCGCACAT
1 ATAAAGGGTTCGCACAT
** *
7932670 ATGGAGGGTTCACACAT
1 ATAAAGGGTTCGCACAT
* * *
7932687 ATAGAGGGTTTGCACAA
1 ATAAAGGGTTCGCACAT
7932704 ATAAAGGGTT
1 ATAAAGGGTT
7932714 TGTACAAATG
Statistics
Matches: 128, Mismatches: 33, Indels: 9
0.75 0.19 0.05
Matches are distributed among these distances:
16 2 0.02
17 106 0.83
18 9 0.07
19 11 0.09
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.26
Consensus pattern (17 bp):
ATAAAGGGTTCGCACAT
Found at i:7932601 original size:34 final size:34
Alignment explanation
Indices: 7932556--7932702 Score: 136
Period size: 34 Copynumber: 4.3 Consensus size: 34
7932546 TATATAGTAG
* **
7932556 AGGTTTACACATATAAAGGGTTCGCACAAATGGA
1 AGGTTTGCACATATGGAGGGTTCGCACAAATGGA
*
7932590 AGGTTTGCACATATGGAGGGTTCGCACATAT--A
1 AGGTTTGCACATATGGAGGGTTCGCACAAATGGA
** * *
7932622 ACGAGTTCACACATATGGAGGGTTCACACAAATGGT
1 A-G-GTTTGCACATATGGAGGGTTCGCACAAATGGA
* * * * *
7932658 GGGTTCGCACATATGGAGGGTTCACACATATAGA
1 AGGTTTGCACATATGGAGGGTTCGCACAAATGGA
*
7932692 GGGTTTGCACA
1 AGGTTTGCACA
7932703 AATAAAGGGT
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
32 2 0.02
33 1 0.01
34 90 0.96
35 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (34 bp):
AGGTTTGCACATATGGAGGGTTCGCACAAATGGA
Found at i:7932640 original size:51 final size:50
Alignment explanation
Indices: 7932563--7932740 Score: 169
Period size: 51 Copynumber: 3.5 Consensus size: 50
7932553 TAGAGGTTTA
* * * *
7932563 CACATATAAAGGGTTCGCACAAATGGAAGGTTTGCACATATGGAGGGTTCG
1 CACATAT-AAGGGTTCACACATATGGAGGGTTTGCACAAATGGAGGGTTCG
* ** *
7932614 CACATATAACGAGTTCACACATATGGAGGGTTCACACAAATGGTGGGTTCG
1 CACATATAA-GGGTTCACACATATGGAGGGTTTGCACAAATGGAGGGTTCG
* * ** *
7932665 CACATATGGAGGGTTCACACATATAGAGGGTTTGCACAAATAAAGGGTTTG
1 CACATAT-AAGGGTTCACACATATGGAGGGTTTGCACAAATGGAGGGTTCG
* * *
7932716 TACAAATGATGGGTTCACACA-ATGG
1 CACATAT-AAGGGTTCACACATATGG
7932741 CTTGGCTCGC
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
50 5 0.05
51 97 0.94
52 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (50 bp):
CACATATAAGGGTTCACACATATGGAGGGTTTGCACAAATGGAGGGTTCG
Found at i:7932712 original size:34 final size:34
Alignment explanation
Indices: 7932531--7932713 Score: 134
Period size: 34 Copynumber: 5.3 Consensus size: 34
7932521 AGGTCATATG
* *
7932531 ATAATAGGGTTCGCATATATAGTAGAGGTTTACACAT
1 ATAA-AGGGTTCGCACATATAG-AG-GGTTTGCACAT
* * *
7932568 ATAAAGGGTTCGCACAAATGGAAGGTTTGCACAT
1 ATAAAGGGTTCGCACATATAGAGGGTTTGCACAT
** * **
7932602 ATGGAGGGTTCGCACATATA-ACGAGTTCACACAT
1 ATAAAGGGTTCGCACATATAGA-GGGTTTGCACAT
** * * * * *
7932636 ATGGAGGGTTCACACAAATGGTGGGTTCGCACAT
1 ATAAAGGGTTCGCACATATAGAGGGTTTGCACAT
** * *
7932670 ATGGAGGGTTCACACATATAGAGGGTTTGCACAA
1 ATAAAGGGTTCGCACATATAGAGGGTTTGCACAT
7932704 ATAAAGGGTT
1 ATAAAGGGTT
7932714 TGTACAAATG
Statistics
Matches: 118, Mismatches: 26, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
33 1 0.01
34 98 0.83
35 1 0.01
36 14 0.12
37 4 0.03
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.26
Consensus pattern (34 bp):
ATAAAGGGTTCGCACATATAGAGGGTTTGCACAT
Found at i:7932737 original size:17 final size:17
Alignment explanation
Indices: 7932572--7932737 Score: 102
Period size: 17 Copynumber: 9.8 Consensus size: 17
7932562 ACACATATAA
*
7932572 AGGGTTCGCACAAATGG
1 AGGGTTCACACAAATGG
* ** *
7932589 AAGGTTTGCACATATGG
1 AGGGTTCACACAAATGG
* * *
7932606 AGGGTTCGCACATAT-A
1 AGGGTTCACACAAATGG
* *
7932622 ACGAGTTCACACATATGG
1 A-GGGTTCACACAAATGG
7932640 AGGGTTCACACAAATGG
1 AGGGTTCACACAAATGG
* * *
7932657 TGGGTTCGCACATATGG
1 AGGGTTCACACAAATGG
* *
7932674 AGGGTTCACACATATAG
1 AGGGTTCACACAAATGG
** **
7932691 AGGGTTTGCACAAATAA
1 AGGGTTCACACAAATGG
***
7932708 AGGGTTTGTACAAAT-G
1 AGGGTTCACACAAATGG
7932724 ATGGGTTCACACAA
1 A-GGGTTCACACAA
7932738 TGGCTTGGCT
Statistics
Matches: 120, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
16 2 0.02
17 117 0.98
18 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (17 bp):
AGGGTTCACACAAATGG
Found at i:7932785 original size:34 final size:34
Alignment explanation
Indices: 7932747--7932856 Score: 116
Period size: 34 Copynumber: 3.2 Consensus size: 34
7932737 ATGGCTTGGC
* *
7932747 TCGCATAAAGGTATGGCCCACATAATGGTAAGGT
1 TCGCATAAAGGTATGGCACACACAATGGTAAGGT
** * * *
7932781 TCGCACT-ATTGTATGGCTCATACAATGGT-ATGT
1 TCGCA-TAAAGGTATGGCACACACAATGGTAAGGT
*
7932814 CTCGCATAAAGGTATGGCACTCACAATGGTAAGGT
1 -TCGCATAAAGGTATGGCACACACAATGGTAAGGT
7932849 TCGCATAA
1 TCGCATAA
7932857 TGGTTTGGTT
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
33 4 0.07
34 52 0.87
35 4 0.07
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (34 bp):
TCGCATAAAGGTATGGCACACACAATGGTAAGGT
Found at i:7932886 original size:68 final size:68
Alignment explanation
Indices: 7932744--7932887 Score: 164
Period size: 68 Copynumber: 2.1 Consensus size: 68
7932734 ACAATGGCTT
* * * * *
7932744 GGCTCGCATAAAGGTATGGCCCACATAATGGTAAGGTTCGCACTATTGTATGGCTCATACAATGG
1 GGCTCGCATAAAGGTATGGCACACACAATGGTAAGGTTCGCACTATGGTATGGCTCACACAAAGG
*
7932809 TAT
66 TAA
* * * * **
7932812 GTCTCGCATAAAGGTATGGCACTCACAATGGTAAGGTTCGCA-TAATGGTTTGGTTTGCACAAAG
1 GGCTCGCATAAAGGTATGGCACACACAATGGTAAGGTTCGCACT-ATGGTATGGCTCACACAAAG
7932876 GTAA
65 GTAA
7932880 GGCTCGCA
1 GGCTCGCA
7932888 CTATCACATA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
67 1 0.02
68 61 0.98
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (68 bp):
GGCTCGCATAAAGGTATGGCACACACAATGGTAAGGTTCGCACTATGGTATGGCTCACACAAAGG
TAA
Found at i:7939170 original size:8 final size:8
Alignment explanation
Indices: 7939157--7939196 Score: 62
Period size: 8 Copynumber: 4.9 Consensus size: 8
7939147 TTTCTCTTTT
7939157 TTTTTTAC
1 TTTTTTAC
7939165 TTTTTTAC
1 TTTTTTAC
7939173 TTTTTTGAC
1 TTTTTT-AC
*
7939182 TTTTGTAC
1 TTTTTTAC
7939190 TTTTTTA
1 TTTTTTA
7939197 AATTTTCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 22 0.76
9 7 0.24
ACGTcount: A:0.12, C:0.10, G:0.05, T:0.72
Consensus pattern (8 bp):
TTTTTTAC
Found at i:7939178 original size:17 final size:17
Alignment explanation
Indices: 7939156--7939195 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
7939146 GTTTCTCTTT
* *
7939156 TTTTTTTACTTTTTTAC
1 TTTTTTGACTTTTGTAC
7939173 TTTTTTGACTTTTGTAC
1 TTTTTTGACTTTTGTAC
7939190 TTTTTT
1 TTTTTT
7939196 AAATTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.75
Consensus pattern (17 bp):
TTTTTTGACTTTTGTAC
Found at i:7939213 original size:4 final size:4
Alignment explanation
Indices: 7939204--7939248 Score: 54
Period size: 4 Copynumber: 10.5 Consensus size: 4
7939194 TTAAATTTTC
*
7939204 TTTA TTTA TTTA TTTA TTTTA TTCA TTTAA TTTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTT-A -TTTA TTTA TTTA TT
7939249 ATTATTAACT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
4 27 0.75
5 6 0.17
6 3 0.08
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:7939253 original size:14 final size:13
Alignment explanation
Indices: 7939204--7939254 Score: 68
Period size: 14 Copynumber: 3.8 Consensus size: 13
7939194 TTAAATTTTC
7939204 TTTA-TTTATTTA
1 TTTATTTTATTTA
*
7939216 TTTATTTTATTCA
1 TTTATTTTATTTA
7939229 TTTAATTTTATTTA
1 TTT-ATTTTATTTA
7939243 TTTATTATTATT
1 TTTATT-TTATT
7939255 AACTTTAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
12 4 0.12
13 13 0.38
14 17 0.50
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:7939256 original size:23 final size:26
Alignment explanation
Indices: 7939208--7939261 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
7939198 ATTTTCTTTA
*
7939208 TTTATTTATTTATTTTATTCATTTAAT
1 TTTATTTATTTA-TTTATTCATTTAAC
7939235 TTTATTTATTTA-TTATT-A-TTAAC
1 TTTATTTATTTATTTATTCATTTAAC
7939258 TTTA
1 TTTA
7939262 AAAATTTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 8 0.31
24 1 0.04
25 5 0.19
27 12 0.46
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.69
Consensus pattern (26 bp):
TTTATTTATTTATTTATTCATTTAAC
Found at i:7939291 original size:46 final size:46
Alignment explanation
Indices: 7939243--7939333 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
7939233 ATTTTATTTA
*
7939243 TTTATTATTATTAACTTTAAAAATTTTGAAATATATA-TTTAAAATAT
1 TTTATTAATA-TAACTTTAAAAATTTT-AAATATATACTTTAAAATAT
** * *
7939290 TTTATTAATATATTTTTTAAAATTTTAAATATATACTTTGAAAT
1 TTTATTAATATAACTTTAAAAATTTTAAATATATACTTTAAAAT
7939334 TACTTTTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
45 9 0.24
46 20 0.53
47 9 0.24
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (46 bp):
TTTATTAATATAACTTTAAAAATTTTAAATATATACTTTAAAATAT
Found at i:7939333 original size:21 final size:20
Alignment explanation
Indices: 7939262--7939334 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 20
7939252 ATTAACTTTA
7939262 AAAATTTTGAAATATATATTT
1 AAAATTTT-AAATATATATTT
*
7939283 AAAATATTTTATTAATATATTTTTT
1 -AAA-ATTTTA--AATATA-TATTT
7939308 AAAATTTTAAATATATACTTT
1 AAAATTTTAAATATATA-TTT
*
7939329 GAAATT
1 AAAATT
7939335 ACTTTTTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
20 1 0.02
21 14 0.33
22 4 0.09
23 11 0.26
24 9 0.21
25 4 0.09
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (20 bp):
AAAATTTTAAATATATATTT
Found at i:7939350 original size:7 final size:7
Alignment explanation
Indices: 7939340--7939383 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
7939330 AAATTACTTT
*
7939340 TTAAATT
1 TTAAATA
7939347 TTAAATA
1 TTAAATA
** *
7939354 TTATTTT
1 TTAAATA
7939361 TTAAATA
1 TTAAATA
7939368 TTAAATA
1 TTAAATA
7939375 TTAAATA
1 TTAAATA
7939382 TT
1 TT
7939384 TTTTAATATT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
TTAAATA
Found at i:7939356 original size:21 final size:21
Alignment explanation
Indices: 7939332--7939377 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
7939322 ATACTTTGAA
*
7939332 ATTACTTTTTAAATTTTAAAT
1 ATTACTTTTTAAATATTAAAT
*
7939353 ATTATTTTTTAAATATTAAAT
1 ATTACTTTTTAAATATTAAAT
7939374 ATTA
1 ATTA
7939378 AATATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTACTTTTTAAATATTAAAT
Found at i:7939378 original size:14 final size:14
Alignment explanation
Indices: 7939340--7939383 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
7939330 AAATTACTTT
7939340 TTAAATTTTAAATA
1 TTAAATTTTAAATA
**
7939354 TTATTTTTTAAATA
1 TTAAATTTTAAATA
*
7939368 TTAAATATTAAATA
1 TTAAATTTTAAATA
7939382 TT
1 TT
7939384 TTTTAATATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAAATTTTAAATA
Found at i:7939400 original size:27 final size:26
Alignment explanation
Indices: 7939355--7939413 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 26
7939345 TTTTAAATAT
*
7939355 TATTTTTTAAATATTAAATA-TTAAA
1 TATTTTTTAAATATAAAATATTTAAA
7939380 TATTTTTTAATATTATAAAATATTTAAA
1 TATTTTTTAA-A-TATAAAATATTTAAA
7939408 TATTTT
1 TATTTT
7939414 AAACTTTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 10 0.33
26 1 0.03
27 8 0.27
28 11 0.37
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
TATTTTTTAAATATAAAATATTTAAA
Found at i:7939411 original size:18 final size:18
Alignment explanation
Indices: 7939363--7939416 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
7939353 ATTATTTTTT
7939363 AAATA-TTAAATATTA-A
1 AAATATTTAAATATTATA
* * *
7939379 ATATTTTTTAATATTATA
1 AAATATTTAAATATTATA
*
7939397 AAATATTTAAATATTTTA
1 AAATATTTAAATATTATA
7939415 AA
1 AA
7939417 CTTTCAAATT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
16 3 0.10
17 9 0.31
18 17 0.59
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AAATATTTAAATATTATA
Found at i:7939887 original size:69 final size:69
Alignment explanation
Indices: 7939811--7940046 Score: 213
Period size: 70 Copynumber: 3.4 Consensus size: 69
7939801 ATATATTTAT
*
7939811 TATTTAAAA-TTAAAAAATAATTTCAAAATTTTATTTTTAAAATTTATAAGAAATAATTTCAAAA
1 TATTTAAAATTTAAAAAATAATTTAAAAATTTTATTTTTAAAATTTATAAGAAATAATTT-AAAA
7939875 ATATA
65 ATATA
* * * * *
7939880 TATTT-AAA-TTAAATATATATTTTTGAAATTATTTTA-TTTT---GTTTA-AA-AATATATTTT
1 TATTTAAAATTTAAA-AAATA-ATTT-AAA-AATTTTATTTTTAAAATTTATAAGAA-ATAATTT
*
7939937 TAAAA-ATA
61 AAAAATATA
* * *
7939945 TATTTAAAATTTAGAAAAATAAATTTAAAAAATATATTTTTAAAATTTATAAGACATAATTTAAA
1 TATTTAAAATTTA-AAAAAT-AATTTAAAAATTTTATTTTTAAAATTTATAAGAAATAATTTAAA
7940010 AATATAA
64 AATAT-A
* *
7940017 TACTCAAAATTTAAAAAATAATTTAAAAAT
1 TATTTAAAATTTAAAAAATAATTTAAAAAT
7940047 AATATTTAAA
Statistics
Matches: 131, Mismatches: 19, Indels: 33
0.72 0.10 0.18
Matches are distributed among these distances:
65 12 0.09
66 16 0.12
67 17 0.13
68 15 0.11
69 13 0.10
70 25 0.19
71 15 0.11
72 18 0.14
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (69 bp):
TATTTAAAATTTAAAAAATAATTTAAAAATTTTATTTTTAAAATTTATAAGAAATAATTTAAAAA
TATA
Found at i:7939977 original size:13 final size:14
Alignment explanation
Indices: 7939951--7939983 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
7939941 AATATATTTA
7939951 AAATTTAGAAAAAT
1 AAATTTAGAAAAAT
7939965 AAATTTA-AAAAAT
1 AAATTTAGAAAAAT
*
7939978 ATATTT
1 AAATTT
7939984 TTAAAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (14 bp):
AAATTTAGAAAAAT
Found at i:7939989 original size:14 final size:14
Alignment explanation
Indices: 7939921--7939949 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7939911 TTTTATTTTG
7939921 TTTAAAAATATATT
1 TTTAAAAATATATT
7939935 TTTAAAAATATATT
1 TTTAAAAATATATT
7939949 T
1 T
7939950 AAAATTTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAAAAATATATT
Found at i:7940006 original size:36 final size:33
Alignment explanation
Indices: 7939811--7940080 Score: 176
Period size: 36 Copynumber: 7.8 Consensus size: 33
7939801 ATATATTTAT
* *
7939811 TATTTAAAA-TTAAAAAATAATTTCAAAATTTTA
1 TATTTAAAATTTAAAAAATAATTT-AAAAATATA
*
7939844 TTTTTAAAATTTATAAGAAATAATTTCAAAAATATA
1 TATTTAAAATTTA-AA-AAATAATTT-AAAAATATA
* * **
7939880 TATTT-AAA-TTAAATATATATTTTTGAAAT-TA
1 TATTTAAAATTTAAA-AAATAATTTAAAAATATA
*** * *
7939911 T-TTTATTTTGTTTAAAAATATATTTTTAAAA-ATA
1 TATTTA--AAATTTAAAAA-ATAATTTAAAAATATA
7939945 TATTTAAAATTTAGAAAAATAAATTTAAAAAATATA
1 TATTTAAAATTTA-AAAAAT-AATTT-AAAAATATA
* *
7939981 TTTTTAAAATTTATAAGACATAATTTAAAAATATAA
1 TATTTAAAATTTA-AA-AAATAATTTAAAAATAT-A
* *
7940017 TACTCAAAATTTAAAAAATAATTTAAAAATA-A
1 TATTTAAAATTTAAAAAATAATTTAAAAATATA
*
7940049 TATTTAAAAATTTTAAAATATATATTATAAAA
1 TATTT-AAAA-TTTAAAAAATA-ATT-TAAAA
7940081 CATTTCAAAT
Statistics
Matches: 188, Mismatches: 29, Indels: 37
0.74 0.11 0.15
Matches are distributed among these distances:
30 3 0.02
31 3 0.02
32 8 0.04
33 28 0.15
34 58 0.31
35 26 0.14
36 59 0.31
37 3 0.02
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (33 bp):
TATTTAAAATTTAAAAAATAATTTAAAAATATA
Found at i:7940053 original size:13 final size:14
Alignment explanation
Indices: 7940024--7940059 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
7940014 TAATACTCAA
7940024 AATTT-AAAA-AAT
1 AATTTAAAAATAAT
7940036 AATTTAAAAATAAT
1 AATTTAAAAATAAT
7940050 -ATTTAAAAAT
1 AATTTAAAAAT
7940060 TTTAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.23
13 14 0.64
14 3 0.14
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATTTAAAAATAAT
Found at i:7940057 original size:23 final size:24
Alignment explanation
Indices: 7940031--7940102 Score: 62
Period size: 23 Copynumber: 3.1 Consensus size: 24
7940021 CAAAATTTAA
7940031 AAAATAATTTAAAAATA-ATATT-T
1 AAAA-AATTTAAAAATATATATTAT
*
7940054 -AAAAATTTTAAAATATATATTAT
1 AAAAAATTTAAAAATATATATTAT
* * * *
7940077 AAAACATTT-CAAATATACATTTT
1 AAAAAATTTAAAAATATATATTAT
7940100 AAA
1 AAA
7940103 TTTTTTAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
21 11 0.27
22 8 0.20
23 15 0.37
24 7 0.17
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (24 bp):
AAAAAATTTAAAAATATATATTAT
Found at i:7940064 original size:34 final size:31
Alignment explanation
Indices: 7939811--7940080 Score: 141
Period size: 34 Copynumber: 7.9 Consensus size: 31
7939801 ATATATTTAT
*
7939811 TATTTAAAA-TTAAAAAATAATTTCAAAATTTTA
1 TATTTAAAATTTAAAAAATAATTT-AAAA--ATA
*
7939844 TTTTTAAAATTTATAAGAAATAATTTCAAAAATA
1 TATTTAAAATTTA-AA-AAATAATTT-AAAAATA
* * * **
7939878 TATATTTAAA-TTAAATATATATTTTTGAAAT-
1 TAT-TTAAAATTTAAA-AAATAATTTAAAAATA
*** *
7939909 TATTTTATTTTGTTTAAAAATATATTTTTAAAAATA
1 TA-TTTA--AAATTTAAAAA-ATA-ATTTAAAAATA
7939945 TATTTAAAATTTAGAAAAATAAATTTAAAAAATA
1 TATTTAAAATTTA-AAAAAT-AATTT-AAAAATA
*
7939979 TATTTTTAAAATTTATAAGACATAATTTAAAAATA
1 TA--TTTAAAATTTA-AA-AAATAATTTAAAAATA
*
7940014 TAATACTCAAAATTTAAAAAATAATTTAAAAATAA
1 T-AT--TTAAAATTTAAAAAATAATTTAAAAAT-A
*
7940049 TATTTAAAAATTTTAAAATATATATTATAAAA
1 TATTT-AAAA-TTTAAAAAATA-ATT-TAAAA
7940081 CATTTCAAAT
Statistics
Matches: 186, Mismatches: 26, Indels: 47
0.72 0.10 0.18
Matches are distributed among these distances:
31 4 0.02
32 6 0.03
33 31 0.17
34 59 0.32
35 34 0.18
36 49 0.26
37 3 0.02
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (31 bp):
TATTTAAAATTTAAAAAATAATTTAAAAATA
Found at i:7940066 original size:22 final size:23
Alignment explanation
Indices: 7940038--7940111 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 23
7940028 TAAAAAATAA
7940038 TTTAAAAATA-ATATTTAAAAAT
1 TTTAAAAATACATATTTAAAAAT
*
7940060 TTT-AAAATATATATTATAAAACAT
1 TTTAAAAATACATATT-TAAAA-AT
* * **
7940084 TTCAAATATACAT-TTTAAATTT
1 TTTAAAAATACATATTTAAAAAT
7940106 TTTAAA
1 TTTAAA
7940112 TTAATAACAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 6 0.14
22 14 0.33
23 9 0.21
24 6 0.14
25 7 0.17
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
TTTAAAAATACATATTTAAAAAT
Found at i:7940333 original size:7 final size:7
Alignment explanation
Indices: 7940323--7940364 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
7940313 TATAATATAT
7940323 ATTTTTA
1 ATTTTTA
7940330 ATTTTTA
1 ATTTTTA
*
7940337 A-TTTAA
1 ATTTTTA
7940343 ATTTTT-
1 ATTTTTA
7940349 ATTTTTA
1 ATTTTTA
*
7940356 TTTTTTA
1 ATTTTTA
7940363 AT
1 AT
7940365 ATATATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 11 0.38
7 18 0.62
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
ATTTTTA
Found at i:7940345 original size:13 final size:13
Alignment explanation
Indices: 7940329--7940383 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 13
7940319 ATATATTTTT
7940329 AATTTTTAATTTA
1 AATTTTTAATTTA
* *
7940342 AATTTTTATTTTT
1 AATTTTTAATTTA
* *
7940355 ATTTTTTAATATA
1 AATTTTTAATTTA
*
7940368 TA-TTTTAA-TTA
1 AATTTTTAATTTA
7940379 AATTT
1 AATTT
7940384 ATTTTTTAAC
Statistics
Matches: 31, Mismatches: 10, Indels: 3
0.70 0.23 0.07
Matches are distributed among these distances:
11 3 0.10
12 8 0.26
13 20 0.65
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
AATTTTTAATTTA
Found at i:7940360 original size:26 final size:26
Alignment explanation
Indices: 7940322--7940392 Score: 79
Period size: 26 Copynumber: 2.6 Consensus size: 26
7940312 TTATAATATA
* *
7940322 TATTTTTAATTTTTAATTTAAATTTT
1 TATTTTTATTTTTTAATATAAATTTT
*
7940348 TATTTTTATTTTTTAATATATATTTT
1 TATTTTTATTTTTTAATATAAATTTT
*
7940374 AATTAAATTTATTTTTTAA
1 TATT---TTTATTTTTTAA
7940393 CAAATAAATC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 26 0.68
29 12 0.32
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (26 bp):
TATTTTTATTTTTTAATATAAATTTT
Found at i:7940373 original size:20 final size:20
Alignment explanation
Indices: 7940315--7940355 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7940305 TGACTAGTTA
*
7940315 TAATATATATTTTTAATTTT
1 TAATATAAATTTTTAATTTT
*
7940335 TAATTTAAATTTTT-ATTTT
1 TAATATAAATTTTTAATTTT
7940354 TA
1 TA
7940356 TTTTTTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TAATATAAATTTTTAATTTT
Found at i:7940646 original size:28 final size:26
Alignment explanation
Indices: 7940604--7940677 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 26
7940594 TTGAAAGTTT
7940604 AAAATATTTAAATATTTTATAATATTAAA
1 AAAATATTT-AATATTTTAT-AT-TTAAA
*
7940633 AAAATATTTAATATTTAATATTTAAA
1 AAAATATTTAATATTTTATATTTAAA
*
7940659 AATAATATTTAAAATTTTA
1 AA-AATATTTAATATTTTA
7940678 AAAAATAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
26 7 0.17
27 16 0.39
28 9 0.22
29 9 0.22
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
AAAATATTTAATATTTTATATTTAAA
Found at i:7940675 original size:20 final size:20
Alignment explanation
Indices: 7940641--7940743 Score: 98
Period size: 22 Copynumber: 4.8 Consensus size: 20
7940631 AAAAAATATT
*
7940641 TAATATTTAATATTTAAAAA
1 TAATATTTAAAATTTAAAAA
7940661 TAATATTTAAAATTTTAAAAAA
1 TAATATTTAAAA-TTT-AAAAA
7940683 TAATATTTAAAATTTTAAAAA
1 TAATATTTAAAA-TTTAAAAA
**
7940704 TATATATTAATAAAATATTTTAAA
1 TA-ATATT--TAAAAT-TTAAAAA
*
7940728 TATATATTTTAAATTT
1 TA-ATATTTAAAATTT
7940744 TTTAAAGTTA
Statistics
Matches: 73, Mismatches: 4, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
20 11 0.15
21 12 0.16
22 31 0.42
23 1 0.01
24 18 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATATTTAAAATTTAAAAA
Found at i:7940713 original size:13 final size:13
Alignment explanation
Indices: 7940694--7940740 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
7940684 AATATTTAAA
7940694 ATTTTAAAAATAT
1 ATTTTAAAAATAT
*
7940707 ATATTAATAAA-AT
1 ATTTTAA-AAATAT
*
7940720 ATTTTAAATATAT
1 ATTTTAAAAATAT
7940733 ATTTTAAA
1 ATTTTAAA
7940741 TTTTTTAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 2 0.07
13 24 0.83
14 3 0.10
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTTTAAAAATAT
Found at i:7940756 original size:69 final size:69
Alignment explanation
Indices: 7940614--7940744 Score: 160
Period size: 68 Copynumber: 1.9 Consensus size: 69
7940604 AAAATATTTA
* *
7940614 AATATTTTATAATATTAAAAAAATATTTAATATTTAATATTTAAAAATAATATTTAAAATTTTAA
1 AATATTTTAAAATATTAAAAAAATATTTAATA-TAAATATTTAAAAATAATATTTAAAATTTTAA
7940679 AAAAT
65 AAAAT
* * * *
7940684 AATA-TTTAAAATTTTAAAAATATATATTAATA-AAATATTT-TAAATATATATTTTAAATTTT
1 AATATTTTAAAATATTAAAAAAATAT-TTAATATAAATATTTAAAAATA-ATATTTAAAATTTT
7940745 TTAAAGTTAA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
67 5 0.09
68 20 0.38
69 18 0.34
70 10 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (69 bp):
AATATTTTAAAATATTAAAAAAATATTTAATATAAATATTTAAAAATAATATTTAAAATTTTAAA
AAAT
Found at i:7950373 original size:12 final size:12
Alignment explanation
Indices: 7950338--7950373 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
7950328 AGGCTCGTAG
7950338 AAGGTTCTTTTT
1 AAGGTTCTTTTT
*
7950350 AAGAGTTGTTTTT
1 AAG-GTTCTTTTT
7950363 AAGGTTCTTTT
1 AAGGTTCTTTT
7950374 ATCATTTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.56
Consensus pattern (12 bp):
AAGGTTCTTTTT
Found at i:7961024 original size:17 final size:17
Alignment explanation
Indices: 7961002--7961054 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
7960992 AACGGGCTAT
7961002 CACACGACCGTGTGACA
1 CACACGACCGTGTGACA
*
7961019 CACACGGCC-TAGTG---
1 CACACGACCGT-GTGACA
7961033 -ACACGACCGTGTGACA
1 CACACGACCGTGTGACA
7961049 CACACG
1 CACACG
7961055 GCCTAGTGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
13 10 0.36
14 1 0.04
16 1 0.04
17 16 0.57
ACGTcount: A:0.28, C:0.36, G:0.25, T:0.11
Consensus pattern (17 bp):
CACACGACCGTGTGACA
Found at i:7961037 original size:30 final size:30
Alignment explanation
Indices: 7961003--7961070 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
7960993 ACGGGCTATC
7961003 ACACGACCGTGTGACACACACGGCCTAGTG
1 ACACGACCGTGTGACACACACGGCCTAGTG
7961033 ACACGACCGTGTGACACACACGGCCTAGTG
1 ACACGACCGTGTGACACACACGGCCTAGTG
7961063 ACACGACC
1 ACACGACC
7961071 ATTTGTCATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.28, C:0.35, G:0.25, T:0.12
Consensus pattern (30 bp):
ACACGACCGTGTGACACACACGGCCTAGTG
Found at i:7961063 original size:17 final size:17
Alignment explanation
Indices: 7961013--7961066 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
7961003 ACACGACCGT
7961013 GTGACACACACGGCCTA
1 GTGACACACACGGCCTA
7961030 GTGACACGAC-C-G--T-
1 GTGACAC-ACACGGCCTA
7961043 GTGACACACACGGCCTA
1 GTGACACACACGGCCTA
7961060 GTGACAC
1 GTGACAC
7961067 GACCATTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
12 2 0.06
13 8 0.26
14 2 0.06
16 2 0.06
17 15 0.48
18 2 0.06
ACGTcount: A:0.28, C:0.33, G:0.26, T:0.13
Consensus pattern (17 bp):
GTGACACACACGGCCTA
Found at i:7961220 original size:54 final size:54
Alignment explanation
Indices: 7961103--7961226 Score: 133
Period size: 54 Copynumber: 2.3 Consensus size: 54
7961093 GTGTTCCAAT
* * * *
7961103 TCAATGAGTTACAAGGCCTAGCACATGGCCTGGCACATGGGCGCGTGTGACAAC
1 TCAATGAGTTACAAGGCCTAGCACACGACCTGGCACATAGGCGCGTGGGACAAC
* * * * ** *
7961157 TCAGA-GAGTTACACGGCCTAGCACACGATCTGGCACATAGGTGTGTGGGGTATC
1 TCA-ATGAGTTACAAGGCCTAGCACACGACCTGGCACATAGGCGCGTGGGACAAC
7961211 TCAATGAGTTACAAGG
1 TCAATGAGTTACAAGG
7961227 GTGAAGACAC
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
53 1 0.02
54 54 0.96
55 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.21
Consensus pattern (54 bp):
TCAATGAGTTACAAGGCCTAGCACACGACCTGGCACATAGGCGCGTGGGACAAC
Found at i:7965532 original size:38 final size:41
Alignment explanation
Indices: 7965482--7965817 Score: 357
Period size: 46 Copynumber: 7.9 Consensus size: 41
7965472 CTAATATGAA
7965482 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC-T-TG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATATG
7965521 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-C--ATATG
*
7965564 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC--CTG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATATG
7965605 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-C--ATATG
*
7965648 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC--CTG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATATG
7965689 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-C--ATAT--G
* *
7965734 ATGTGTAAGATCATGGTTGAAAGATACCATGGCAACGTGACATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC---ATATG
* ** *
7965778 AAAAGAATAAGACCATGGTTGAAAGTTACCATGGCAACAT
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAT
7965818 GACAGAAAAT
Statistics
Matches: 258, Mismatches: 12, Indels: 50
0.81 0.04 0.16
Matches are distributed among these distances:
38 102 0.40
39 3 0.01
41 4 0.02
42 1 0.00
43 6 0.02
44 1 0.00
45 4 0.02
46 137 0.53
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (41 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATATG
Found at i:7965588 original size:46 final size:46
Alignment explanation
Indices: 7965521--7965859 Score: 424
Period size: 46 Copynumber: 7.7 Consensus size: 46
7965511 TGGCAACTTG
7965521 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
7965567 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
7965605 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
7965651 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
7965689 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * *
7965735 TGTGTAAGATCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * * *
7965781 AGAATAAGACCATGGTTGAAAGTTACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
7965827 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
7965860 TCACGTCTAA
Statistics
Matches: 260, Mismatches: 16, Indels: 34
0.84 0.05 0.11
Matches are distributed among these distances:
38 72 0.28
41 4 0.02
43 4 0.02
45 1 0.00
46 179 0.69
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:7965607 original size:84 final size:84
Alignment explanation
Indices: 7965475--7965859 Score: 574
Period size: 84 Copynumber: 4.5 Consensus size: 84
7965465 GTGCTCTCTA
*
7965475 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGTGTGTAAGACCATGGTTGA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTTGA
7965540 AAGATACCATGGCAACCTG
66 AAGATACCATGGCAACCTG
7965559 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTTGA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTTGA
7965624 AAGATACCATGGCAACCTG
66 AAGATACCATGGCAACCTG
7965643 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTTGA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTTGA
7965708 AAGATACCATGGCAACCTG
66 AAGATACCATGGCAACCTG
* * * *
7965727 ATATGAGATGTGTAAGATCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACC
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---TG--TAAGACC
* *
7965792 ATGGTTGAAAGTTACCATGGCAACATG
58 ATGGTTGAAAGATACCATGGCAACCTG
* * * * *
7965819 ACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 ATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
7965860 TCACGTCTAA
Statistics
Matches: 278, Mismatches: 14, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
84 210 0.76
87 2 0.01
90 1 0.00
91 1 0.00
92 64 0.23
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (84 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGTTGA
AAGATACCATGGCAACCTG
Found at i:7966165 original size:23 final size:25
Alignment explanation
Indices: 7966120--7966166 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7966110 AATAAATATA
*
7966120 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
7966145 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
7966167 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:7971963 original size:13 final size:13
Alignment explanation
Indices: 7971945--7971973 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7971935 TTCTAACAGC
7971945 GTTCATACATTTG
1 GTTCATACATTTG
7971958 GTTCATACATTTG
1 GTTCATACATTTG
7971971 GTT
1 GTT
7971974 GAGAGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.14, G:0.17, T:0.48
Consensus pattern (13 bp):
GTTCATACATTTG
Found at i:7976011 original size:16 final size:16
Alignment explanation
Indices: 7975990--7976020 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7975980 GGCGCAATTT
7975990 TAAAAAAATATTTGAA
1 TAAAAAAATATTTGAA
7976006 TAAAAAAATATTTGA
1 TAAAAAAATATTTGA
7976021 GCCGCTTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (16 bp):
TAAAAAAATATTTGAA
Found at i:7978842 original size:13 final size:14
Alignment explanation
Indices: 7978824--7978853 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7978814 CTTCCATCTA
7978824 TTTTTAT-TTATTC
1 TTTTTATATTATTC
7978837 TTTTTATATTATTC
1 TTTTTATATTATTC
7978851 TTT
1 TTT
7978854 AATTATTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTATATTATTC
Found at i:7978968 original size:18 final size:18
Alignment explanation
Indices: 7978945--7978979 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
7978935 AATCCATCAC
7978945 GTATTGGCTAAATCTATA
1 GTATTGGCTAAATCTATA
7978963 GTATTGGCTAAATCTAT
1 GTATTGGCTAAATCTAT
7978980 CTATTCTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (18 bp):
GTATTGGCTAAATCTATA
Found at i:7983058 original size:16 final size:16
Alignment explanation
Indices: 7983033--7983063 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7983023 CACCACTTGG
*
7983033 ATTGTTTGCCATTAAA
1 ATTGTCTGCCATTAAA
7983049 ATTGTCTGCCATTAA
1 ATTGTCTGCCATTAA
7983064 TCATTAATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (16 bp):
ATTGTCTGCCATTAAA
Found at i:7986419 original size:25 final size:26
Alignment explanation
Indices: 7986382--7986434 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
7986372 TCAAACATGC
7986382 ATTTAGGTCAATTTAATC-CTAGGGGT
1 ATTTAGGTCAATTT-ATCACTAGGGGT
*
7986408 ATTTCGGT-AATTTATCTACTAGGGGT
1 ATTTAGGTCAATTTATC-ACTAGGGGT
7986434 A
1 A
7986435 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 5 0.21
26 16 0.67
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTATCACTAGGGGT
Found at i:7987951 original size:26 final size:26
Alignment explanation
Indices: 7987915--7988102 Score: 254
Period size: 26 Copynumber: 7.2 Consensus size: 26
7987905 CATGAATTTC
7987915 TTATCATGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAAACCA
*
7987941 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAAACCA
* * *
7987967 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAAACCA
*
7987993 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAAACCA
*
7988019 TTATCATGGAACATTTACCT-AACCTA
1 TTATCATGAAACATTTACCTAAACC-A
* *
7988045 TTATTATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAAACCA
* *
7988071 TTATCATGGAACGTTTACCT-AACCTA
1 TTATCATGAAACATTTACCTAAACC-A
7988097 TTATCA
1 TTATCA
7988103 ATTTGTATCA
Statistics
Matches: 143, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
25 6 0.04
26 134 0.94
27 3 0.02
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAAACCA
Found at i:7987994 original size:52 final size:52
Alignment explanation
Indices: 7987915--7988102 Score: 308
Period size: 52 Copynumber: 3.6 Consensus size: 52
7987905 CATGAATTTC
*
7987915 TTATCATGAAACATTTACCTAAACC-ATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCT-AACCTATTATCATGAAACATTTACCTAACCCA
*
7987967 TTATCATGGAATATTTACCTAATCC-ATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAA-CCTATTATCATGAAACATTTACCTAACCCA
*
7988019 TTATCATGGAACATTTACCTAACCTATTATTATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
*
7988071 TTATCATGGAACGTTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
7988103 ATTTGTATCA
Statistics
Matches: 128, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
51 4 0.03
52 124 0.97
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:7988048 original size:78 final size:78
Alignment explanation
Indices: 7987915--7988102 Score: 286
Period size: 78 Copynumber: 2.4 Consensus size: 78
7987905 CATGAATTTC
* * *
7987915 TTATCATGAAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCATTATCATGGAATA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGAAACA
*
7987980 TTTACCTAATCCA
66 TTTACCTAACCCA
* * *
7987993 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATTATGAAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGAAACA
7988058 TTTACCTAACCCA
66 TTTACCTAACCCA
* * *
7988071 TTATCATGGAACGTTTACCTAACCTATTATCA
1 TTATCATGAAACATTTACCTAACCCATTATCA
7988103 ATTTGTATCA
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 100 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGAAACA
TTTACCTAACCCA
Found at i:7990272 original size:16 final size:16
Alignment explanation
Indices: 7990247--7990277 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7990237 CACCACTTGG
*
7990247 ATTGTTTGCCATTAAA
1 ATTGTCTGCCATTAAA
7990263 ATTGTCTGCCATTAA
1 ATTGTCTGCCATTAA
7990278 TCATTAATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (16 bp):
ATTGTCTGCCATTAAA
Found at i:7997735 original size:29 final size:29
Alignment explanation
Indices: 7997690--7997773 Score: 82
Period size: 30 Copynumber: 2.9 Consensus size: 29
7997680 TTTACAAATT
*
7997690 TGCTCAAATAA-AGGTCAAAGCC-TTTAAAA
1 TGCTTAAATAAGA-GTCAAA-CCTTTTAAAA
* *
7997719 TGGTTAAATATGAGTCAAACCTTTTTAAAA
1 TGCTTAAATAAGAGTCAAACC-TTTTAAAA
* *
7997749 TGCTTAAATAAGGGTCAAACATTTT
1 TGCTTAAATAAGAGTCAAACCTTTT
7997774 CGGAAGTGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
28 2 0.04
29 18 0.40
30 25 0.56
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.32
Consensus pattern (29 bp):
TGCTTAAATAAGAGTCAAACCTTTTAAAA
Found at i:7997748 original size:30 final size:30
Alignment explanation
Indices: 7997712--7997773 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
7997702 GGTCAAAGCC
* * *
7997712 TTTAAAATGGTTAAATATGAGTCAAACCTT
1 TTTAAAATGCTTAAATAAGAGTCAAACATT
*
7997742 TTTAAAATGCTTAAATAAGGGTCAAACATT
1 TTTAAAATGCTTAAATAAGAGTCAAACATT
7997772 TT
1 TT
7997774 CGGAAGTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (30 bp):
TTTAAAATGCTTAAATAAGAGTCAAACATT
Found at i:8000367 original size:18 final size:18
Alignment explanation
Indices: 8000339--8000384 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
8000329 AGTGAAATTT
* *
8000339 ATATGAAAATCCCTGAATG
1 ATAT-AAAATCCCAGAAGG
*
8000358 ATTTAAAATCCCAGAAGG
1 ATATAAAATCCCAGAAGG
8000376 ATATAAAAT
1 ATATAAAAT
8000385 TTCACGTGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (18 bp):
ATATAAAATCCCAGAAGG
Found at i:8003255 original size:18 final size:18
Alignment explanation
Indices: 8003234--8003273 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8003224 GAAATATTTA
*
8003234 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
8003252 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
8003270 TTTT
1 TTTT
8003274 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:8003305 original size:12 final size:12
Alignment explanation
Indices: 8003275--8003307 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
8003265 TATATTTTTT
8003275 AAAATT-ATATA
1 AAAATTAATATA
8003286 AAAA-TAATATA
1 AAAATTAATATA
8003297 AAAATTAATAT
1 AAAATTAATAT
8003308 GGGCGGGTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:8010724 original size:43 final size:43
Alignment explanation
Indices: 8010656--8010743 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
8010646 CATAAGCATA
* *
8010656 TGACCTAGCCATGTGACGCATACGGCCTGGAGACACGGT-CATG
1 TGACCCAGCCATGTGACGCACACGGCCTGGAGACAC-GTCCATG
* * *
8010699 TGACCCAGCCTTGTGAGGCACACGGCCTGGCGACACGTCCATG
1 TGACCCAGCCATGTGACGCACACGGCCTGGAGACACGTCCATG
8010742 TG
1 TG
8010744 TCATTTGAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 2 0.05
43 37 0.95
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
TGACCCAGCCATGTGACGCACACGGCCTGGAGACACGTCCATG
Found at i:8010957 original size:12 final size:12
Alignment explanation
Indices: 8010927--8010968 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
8010917 TCATAGAGTT
*
8010927 ACACGGATGAGG
1 ACACGGGTGAGG
8010939 ACACGGGTGAGG
1 ACACGGGTGAGG
*
8010951 GCACGGGCTGA-G
1 ACACGGG-TGAGG
8010963 ACACGG
1 ACACGG
8010969 TAATGTGTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
12 23 0.88
13 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.45, T:0.07
Consensus pattern (12 bp):
ACACGGGTGAGG
Found at i:8016795 original size:2 final size:2
Alignment explanation
Indices: 8016750--8016778 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8016740 GGAAACTAAT
8016750 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8016779 GAAGAATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8020303 original size:21 final size:21
Alignment explanation
Indices: 8020278--8020317 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8020268 CGGCACAGGT
8020278 GGAGGGGAAGGGGGAGGAGGA
1 GGAGGGGAAGGGGGAGGAGGA
* *
8020299 GGAGGGGGAGGTGGAGGAG
1 GGAGGGGAAGGGGGAGGAG
8020318 CTGGAGGAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.72, T:0.03
Consensus pattern (21 bp):
GGAGGGGAAGGGGGAGGAGGA
Found at i:8020304 original size:15 final size:15
Alignment explanation
Indices: 8020286--8020327 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8020276 GTGGAGGGGA
8020286 AGGGGGAGGAGGAGG
1 AGGGGGAGGAGGAGG
*
8020301 AGGGGGAGGTGGAGG
1 AGGGGGAGGAGGAGG
**
8020316 AGCTGGAGGAGG
1 AGGGGGAGGAGG
8020328 GGGAAGTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.24, C:0.02, G:0.69, T:0.05
Consensus pattern (15 bp):
AGGGGGAGGAGGAGG
Found at i:8020323 original size:21 final size:21
Alignment explanation
Indices: 8020277--8020324 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
8020267 GCGGCACAGG
*
8020277 TGGAGGGGAAGGGGGAGGAGG
1 TGGAGGGGAAGGGGGAGGAGC
* * *
8020298 AGGAGGGGGAGGTGGAGGAGC
1 TGGAGGGGAAGGGGGAGGAGC
8020319 TGGAGG
1 TGGAGG
8020325 AGGGGGAAGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.02, G:0.69, T:0.06
Consensus pattern (21 bp):
TGGAGGGGAAGGGGGAGGAGC
Found at i:8023831 original size:37 final size:37
Alignment explanation
Indices: 8023781--8023857 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
8023771 ACTTCACTGG
* *
8023781 TTATGTTTTCTTGCTATGTGAAACCTTTTCCATCATT
1 TTATGTCTCCTTGCTATGTGAAACCTTTTCCATCATT
*
8023818 TTATGTCTCCTTGCTATGTGAAACCTTTTTCATCATT
1 TTATGTCTCCTTGCTATGTGAAACCTTTTCCATCATT
8023855 TTA
1 TTA
8023858 ACTTTCGGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.19, C:0.19, G:0.10, T:0.51
Consensus pattern (37 bp):
TTATGTCTCCTTGCTATGTGAAACCTTTTCCATCATT
Found at i:8025448 original size:14 final size:14
Alignment explanation
Indices: 8025429--8025459 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8025419 ACCTATGCAA
8025429 TTTGGTTAATTTGG
1 TTTGGTTAATTTGG
*
8025443 TTTGGTTAGTTTGG
1 TTTGGTTAATTTGG
8025457 TTT
1 TTT
8025460 TAATGTTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.00, G:0.29, T:0.61
Consensus pattern (14 bp):
TTTGGTTAATTTGG
Found at i:8026915 original size:17 final size:17
Alignment explanation
Indices: 8026893--8026936 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
8026883 GATTTCTAAA
8026893 TCTTTTTAGTTATTTCT
1 TCTTTTTAGTTATTTCT
* *
8026910 TCTTTTTTGTTCTTTCT
1 TCTTTTTAGTTATTTCT
* *
8026927 ACATTTTAGT
1 TCTTTTTAGT
8026937 AAGTATTCTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.11, C:0.14, G:0.07, T:0.68
Consensus pattern (17 bp):
TCTTTTTAGTTATTTCT
Found at i:8027744 original size:41 final size:41
Alignment explanation
Indices: 8027699--8027780 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
8027689 AATCTAATTG
*
8027699 GGAAAATAATT-CTTTAATTCTAATAAACTACTAAAAGATAA
1 GGAAAATAATTCCCTT-ATTCTAATAAACTACTAAAAGATAA
8027740 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
1 GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
8027781 AATAAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 36 0.92
42 3 0.08
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.30
Consensus pattern (41 bp):
GGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAA
Found at i:8030276 original size:198 final size:198
Alignment explanation
Indices: 8029938--8030318 Score: 708
Period size: 198 Copynumber: 1.9 Consensus size: 198
8029928 TTATTAGAAG
* *
8029938 CACCTAATTGGTTACTAAAAAATTCCCCACCGTTGTCACTCCGAAGTACTTCTATTCTCACACCA
1 CACCTAATTGGTGACTAAAAAATTCCCCACCATTGTCACTCCGAAGTACTTCTATTCTCACACCA
8030003 AATTGTGTTTTCACCATAGCATAAATAGACTAAAACACATTTTTAACTTCAGACTTATTTTTTAA
66 AATTGTGTTTTCACCATAGCATAAATAGACTAAAACACATTTTTAACTTCAGACTTATTTTTTAA
* ** *
8030068 TAAAAACACCCAGCAAATGTGAGTATGATCATCAATAAATGTCACAAATCAACATTTGGTTAATA
131 TAAAAACACCCAACAAATGCAAGTATGATCATCAATAAATGTCACAAACCAACATTTGGTTAATA
8030133 AAA
196 AAA
8030136 CACCTAATTGGTGACTAAAAAATTCCCCACCATTGTCACTCCGAAGTACTTCTATTCTCACACCA
1 CACCTAATTGGTGACTAAAAAATTCCCCACCATTGTCACTCCGAAGTACTTCTATTCTCACACCA
8030201 AATTGTGTTTTCACCATAGCATAAATAGACTAAAACACATTTTTAACTTCAGACTTATTTTTTAA
66 AATTGTGTTTTCACCATAGCATAAATAGACTAAAACACATTTTTAACTTCAGACTTATTTTTTAA
8030266 TAAAAACACCCAACAAATGCAAGTATGATCATCAATAAATGTCACAAACCAAC
131 TAAAAACACCCAACAAATGCAAGTATGATCATCAATAAATGTCACAAACCAAC
8030319 GTTTTCTTGA
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
198 177 1.00
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (198 bp):
CACCTAATTGGTGACTAAAAAATTCCCCACCATTGTCACTCCGAAGTACTTCTATTCTCACACCA
AATTGTGTTTTCACCATAGCATAAATAGACTAAAACACATTTTTAACTTCAGACTTATTTTTTAA
TAAAAACACCCAACAAATGCAAGTATGATCATCAATAAATGTCACAAACCAACATTTGGTTAATA
AAA
Found at i:8034272 original size:13 final size:13
Alignment explanation
Indices: 8034254--8034278 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8034244 TAAAATAATA
8034254 ATAATAAAAGTAT
1 ATAATAAAAGTAT
8034267 ATAATAAAAGTA
1 ATAATAAAAGTA
8034279 AATATAGGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (13 bp):
ATAATAAAAGTAT
Found at i:8039804 original size:10 final size:10
Alignment explanation
Indices: 8039789--8039825 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
8039779 TATTTTTAAT
8039789 TTTTATATTA
1 TTTTATATTA
8039799 TTTTATATATA
1 TTTTATAT-TA
8039810 TTTT-TATTA
1 TTTTATATTA
8039819 TTTTATA
1 TTTTATA
8039826 CAATATTGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 6 0.24
10 13 0.52
11 6 0.24
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTATATTA
Found at i:8043057 original size:3 final size:3
Alignment explanation
Indices: 8043049--8043267 Score: 60
Period size: 3 Copynumber: 72.3 Consensus size: 3
8043039 AAGAAAAGCT
* *
8043049 ATA ATA ATA ATA GTA ATT ATA ATA A-A AGTA ATA ATA ATA A-A TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA -ATA
* * * * * * * *
8043094 ACA ATA GTA ATA TTA GTG ATA A-A A-A ATA ATA GCT- ATA AAA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
** * * * *
8043137 A-A CATA ATA ACC ATG ACA ATAA AGA ATA ATA GTA ATA ATA ATA ATA
1 ATA -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
8043183 ATGA A-A ATA A-A AGTA ATA TTA ATA ATA TATT ATA TTA CGATA GTA
1 AT-A ATA ATA ATA A-TA ATA ATA ATA ATA -ATA ATA ATA --ATA ATA
* * * *
8043228 A-A GTA ATA ACA ATA GTG ATA ATA ATA ATA ATA ATTA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA A
8043268 GTTAAATTAA
Statistics
Matches: 153, Mismatches: 44, Indels: 38
0.65 0.19 0.16
Matches are distributed among these distances:
2 14 0.09
3 121 0.79
4 16 0.10
5 2 0.01
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:8043080 original size:24 final size:24
Alignment explanation
Indices: 8043053--8043110 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
8043043 AAAGCTATAA
* *
8043053 TAATAATAGTAATTATAATAAAAG
1 TAATAATAGTAAATATAACAAAAG
* *
8043077 TAATAATAATAAATATAACAATAG
1 TAATAATAGTAAATATAACAAAAG
*
8043101 TAATATTAGT
1 TAATAATAGT
8043111 GATAAAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (24 bp):
TAATAATAGTAAATATAACAAAAG
Found at i:8043296 original size:23 final size:22
Alignment explanation
Indices: 8043246--8043303 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 22
8043236 ACAATAGTGA
*
8043246 TAATAATAATAATAATTAATAAG
1 TAATAA-ATTAATAATTAATAAG
*
8043269 T--TAAATTAATTATTAATAAAG
1 TAATAAATTAATAATTAAT-AAG
*
8043290 TAATAAATAAATAA
1 TAATAAATTAATAA
8043304 ACATAAAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
20 11 0.39
21 7 0.25
23 10 0.36
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (22 bp):
TAATAAATTAATAATTAATAAG
Found at i:8043414 original size:3 final size:3
Alignment explanation
Indices: 8043408--8044041 Score: 151
Period size: 3 Copynumber: 206.7 Consensus size: 3
8043398 AAATATACAC
8043408 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
8043456 TAA TAG TAA TAA TAT TGA -AA TCCAA AAA GTAA -ATA TAA AAA TAT TAAA
1 TAA TAA TAA TAA TAA TAA TAA T--AA TAA -TAA TA-A TAA TAA TAA T-AA
* * *
8043504 TAA -AG TAA TAAA GAA TAA TAC T-A TATA TAAA TATA TACA T-A TACA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TA-A T-AA TA-A TA-A TAA TA-A
* * * * *
8043549 TACA CATA TAA TGAA -AA TACA CAC TAA TAT TAA TAA TAA TAA TGA TAA
1 TA-A TA-A TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
8043597 TAG TAA TAA TAT TAA -AA TACA AAA AAA CAA -ATA TAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TAA TAA TAA TAA
* * * * *
8043641 AAA TAT TAA -AA TAA -AG TAA -AA AAA CT-A TGTA TAA -ATA TATA TACA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA T-AA TAA TA-A TA-A TA-A
* *
8043686 T-A TACA TACA TATA TAA TAA AAA T-A TACA CTAA TAT TAA TAA TAA
1 TAA TA-A TA-A TA-A TAA TAA TAA TAA TA-A -TAA TAA TAA TAA TAA
* * * * *
8043731 TAA TGA TAA TAG TAA TAA TAT TAA -AA TACA -AA AAA CAA -ATA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TAA
* * * *
8043775 T-A TAA TAA AAA TTAA -AA TAA -AG TAAA TAA -AA -AA TAC T-A TGTA
1 TAA TAA TAA TAA -TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA T-AA
* *
8043817 TAA -ATA TATA TACA TACA TATA TAA TAA AACA TACA CTAA TAT TAA TAA
1 TAA TA-A TA-A TA-A TA-A TA-A TAA TAA TA-A TA-A -TAA TAA TAA TAA
* *
8043866 TAA TAA TAA TAC TAGA -AA TAA TAA TAA CTAG TAA TAA TAA TACA TTAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TA-A -TAA
* ** * * * * *
8043914 GAA TAA TAA T-A TGT TAA TAA AAA TAG TAG TAA TGAA -AA CAA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
*** *
8043958 TAA CGG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
8044006 TAT TAA TAT TAA TAA TAT TAA -AA -AA TAA TAA GAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8044042 TTTAATAAAG
Statistics
Matches: 467, Mismatches: 102, Indels: 124
0.67 0.15 0.18
Matches are distributed among these distances:
2 48 0.10
3 324 0.69
4 86 0.18
5 9 0.02
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8045890 original size:15 final size:15
Alignment explanation
Indices: 8045870--8045900 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8045860 ATGAGGCGGC
8045870 ATATATAAATATTAT
1 ATATATAAATATTAT
*
8045885 ATATATAATTATTAT
1 ATATATAAATATTAT
8045900 A
1 A
8045901 ATTATTAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATATATAAATATTAT
Found at i:8045907 original size:3 final size:3
Alignment explanation
Indices: 8045879--8045955 Score: 68
Period size: 3 Copynumber: 25.7 Consensus size: 3
8045869 CATATATAAA
* * * * * *
8045879 TAT TA- TAT ATAT AAT TAT TAT AAT TAT TAAC CAT TAT TGT TGT T-T
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT
8045924 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8045956 AATAAAGTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
2 4 0.07
3 53 0.87
4 4 0.07
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:8047266 original size:17 final size:17
Alignment explanation
Indices: 8047229--8047284 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
8047219 AGATTGGTAG
*
8047229 GAAATTG-AATG-GATT
1 GAAATTGAAATGAAATT
8047244 GTAAATTGAAATGAAATT
1 G-AAATTGAAATGAAATT
* *
8047262 GAAATTGATATGAAAAT
1 GAAATTGAAATGAAATT
8047279 GAAATT
1 GAAATT
8047285 AAAAAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
15 1 0.03
16 6 0.17
17 24 0.69
18 4 0.11
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (17 bp):
GAAATTGAAATGAAATT
Found at i:8050033 original size:18 final size:18
Alignment explanation
Indices: 8049987--8050033 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
8049977 AAAACAGACT
8049987 CACT-ACCCAAACCTACC
1 CACTAACCCAAACCTACC
*
8050004 CAAC-AGACCCAAACTTACC
1 C-ACTA-ACCCAAACCTACC
8050023 CACTAACCCAA
1 CACTAACCCAA
8050034 TACTAACCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 1 0.04
18 10 0.40
19 14 0.56
ACGTcount: A:0.40, C:0.47, G:0.02, T:0.11
Consensus pattern (18 bp):
CACTAACCCAAACCTACC
Found at i:8051120 original size:14 final size:15
Alignment explanation
Indices: 8051103--8051137 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
8051093 ATTTAAGTTA
8051103 ATTATTTTAGTAT-T
1 ATTATTTTAGTATCT
8051117 ATTATTTTAGTATCT
1 ATTATTTTAGTATCT
8051132 ATTATT
1 ATTATT
8051138 AATGTCATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.63
Consensus pattern (15 bp):
ATTATTTTAGTATCT
Found at i:8052119 original size:24 final size:25
Alignment explanation
Indices: 8052091--8052155 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 25
8052081 TTTTTATATA
8052091 TATTATTATGTATATATACT-TTAGC
1 TATTATTATGTATATATACTCTTA-C
* *
8052116 -ATTACTAAT-TATATATATTCTTAC
1 TATTA-TTATGTATATATACTCTTAC
8052140 TATT-TTATGTATATAT
1 TATTATTATGTATATAT
8052156 TTCAAATACT
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
23 3 0.09
24 21 0.64
25 9 0.27
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.54
Consensus pattern (25 bp):
TATTATTATGTATATATACTCTTAC
Found at i:8056679 original size:26 final size:26
Alignment explanation
Indices: 8056640--8056747 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
8056630 TAAAATTTCC
*
8056640 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8056666 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
8056692 ATCATGAAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
8056718 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8056744 ATCA
1 ATCA
8056748 ATTTATATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8057834 original size:58 final size:58
Alignment explanation
Indices: 8057692--8057841 Score: 146
Period size: 58 Copynumber: 2.6 Consensus size: 58
8057682 CAGGACTATG
* * * * *
8057692 CAAATTGAGAATGTAGCAAAATGTGTCA-CATTCAAAGTCGAACTGTTCAAAATTAGA
1 CAAATTGAGAATGTAGCAAAAGGTGCCACCATTCAAAGTCGAACTATTCAAAATAACA
* * * * * *
8057749 -AAAGTTTATAAATG-AGCAATAGATGCCACCATT-AATAGTTGAACTATTCAAGATAACA
1 CAAA-TTGA-GAATGTAGCAAAAGGTGCCACCATTCAA-AGTCGAACTATTCAAAATAACA
8057807 CAAATTGAGAATGTAGCAAAAGGTGCCACCATTCA
1 CAAATTGAGAATGTAGCAAAAGGTGCCACCATTCA
8057842 CGGTTAAACT
Statistics
Matches: 71, Mismatches: 15, Indels: 12
0.72 0.15 0.12
Matches are distributed among these distances:
56 3 0.04
57 19 0.27
58 45 0.63
59 4 0.06
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (58 bp):
CAAATTGAGAATGTAGCAAAAGGTGCCACCATTCAAAGTCGAACTATTCAAAATAACA
Found at i:8063588 original size:13 final size:13
Alignment explanation
Indices: 8063544--8063604 Score: 52
Period size: 13 Copynumber: 4.5 Consensus size: 13
8063534 AGGAAAGAAG
8063544 TTTAAAAGTTAAAAT
1 TTTAAAA-TT-AAAT
* *
8063559 TGTTATAA-TAAAA
1 T-TTAAAATTAAAT
8063572 TTTAAAATTAAAT
1 TTTAAAATTAAAT
* *
8063585 TTTAAAAATAAAG
1 TTTAAAATTAAAT
8063598 TTTAAAA
1 TTTAAAA
8063605 CAATTTTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
12 5 0.13
13 26 0.68
14 1 0.03
15 1 0.03
16 5 0.13
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (13 bp):
TTTAAAATTAAAT
Found at i:8063592 original size:14 final size:13
Alignment explanation
Indices: 8063565--8063604 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
8063555 AAATTGTTAT
*
8063565 AATAAAATTTAAA
1 AATAAAGTTTAAA
* *
8063578 ATTAAATTTTAAA
1 AATAAAGTTTAAA
8063591 AATAAAGTTTAAA
1 AATAAAGTTTAAA
8063604 A
1 A
8063605 CAATTTTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (13 bp):
AATAAAGTTTAAA
Found at i:8063976 original size:16 final size:16
Alignment explanation
Indices: 8063955--8063995 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
8063945 TATGGTTATG
*
8063955 AAATAAATATTAAGAT
1 AAATAAATATAAAGAT
*
8063971 AAATAAAGATAAAGAT
1 AAATAAATATAAAGAT
*
8063987 AATTAAATA
1 AAATAAATA
8063996 ATATTTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (16 bp):
AAATAAATATAAAGAT
Found at i:8064031 original size:21 final size:21
Alignment explanation
Indices: 8063992--8064041 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
8063982 AAGATAATTA
* *
8063992 AATAATATTTATTTTTATGAT
1 AATAATATTTATCTCTATGAT
*
8064013 AATAGTATTTATCTCTATGA-
1 AATAATATTTATCTCTATGAT
*
8064033 AAAAATATT
1 AATAATATT
8064042 AAAAATAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (21 bp):
AATAATATTTATCTCTATGAT
Found at i:8066309 original size:17 final size:18
Alignment explanation
Indices: 8066274--8066316 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8066264 AACATATATA
*
8066274 TAAAGTGTATAATAAAAT
1 TAAAATGTATAATAAAAT
8066292 TAAAATGTATAA-AAAAT
1 TAAAATGTATAATAAAAT
8066309 TCAAAATG
1 T-AAAATG
8066317 AAGTTTTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.30
Consensus pattern (18 bp):
TAAAATGTATAATAAAAT
Found at i:8068719 original size:5 final size:5
Alignment explanation
Indices: 8068709--8068741 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
8068699 CAATTTTTTT
*
8068709 AAAA- AAAAA AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
8068742 CAAATCTCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:8076126 original size:43 final size:43
Alignment explanation
Indices: 8076045--8076126 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
8076035 TGTAAATTAA
* *
8076045 ATTATAATTATTTTAAATGTGTAATAATCACTACTTCTAATGC
1 ATTATAATTATTTTAAATGTATAATAATCACGACTTCTAATGC
* * *
8076088 ATTATAA-TATTTTTAAATGTATAGTTATCACGATTTCTA
1 ATTATAATTA-TTTTAAATGTATAATAATCACGACTTCTA
8076127 TTTTGCTTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 31 0.94
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (43 bp):
ATTATAATTATTTTAAATGTATAATAATCACGACTTCTAATGC
Found at i:8085184 original size:46 final size:44
Alignment explanation
Indices: 8085125--8085239 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
8085115 ACAGGACAGA
* *
8085125 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
8085171 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
8085215 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
8085240 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:8085220 original size:44 final size:45
Alignment explanation
Indices: 8085125--8085258 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
8085115 ACAGGACAGA
* *
8085125 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
8085171 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
8085215 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
8085259 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:8092590 original size:44 final size:45
Alignment explanation
Indices: 8092495--8092628 Score: 144
Period size: 44 Copynumber: 3.0 Consensus size: 45
8092485 ACAGGACAGA
* * *
8092495 ACAGAAATGAGCCATGTAAGCCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
8092541 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
8092585 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
8092629 CAGGATATTG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 36 0.49
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:8095226 original size:26 final size:26
Alignment explanation
Indices: 8095197--8095304 Score: 92
Period size: 26 Copynumber: 4.2 Consensus size: 26
8095187 CTGATTGAAT
* * *
8095197 AATAATTCTTGTGAACTCATGCTTGG
1 AATAATGCTTGTGAACTCATACATGG
* *
8095223 AATAGTGCTTGTGGACTCATACATGG
1 AATAATGCTTGTGAACTCATACATGG
* *
8095249 AATAATCCTCGTGGAA-TCATACATGG
1 AATAATGCTTGT-GAACTCATACATGG
* * * * *
8095275 AATAGTCCTTGCGGACTCATACAGGG
1 AATAATGCTTGTGAACTCATACATGG
8095301 AATA
1 AATA
8095305 GTCCTTGCAG
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
25 2 0.03
26 62 0.94
27 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (26 bp):
AATAATGCTTGTGAACTCATACATGG
Found at i:8095305 original size:26 final size:26
Alignment explanation
Indices: 8095211--8095318 Score: 126
Period size: 26 Copynumber: 4.2 Consensus size: 26
8095201 ATTCTTGTGA
* * * *
8095211 ACTCATGCTTGGAATAGTGCTTGTGG
1 ACTCATACATGGAATAGTCCTTGCGG
* * *
8095237 ACTCATACATGGAATAATCCTCGTGG
1 ACTCATACATGGAATAGTCCTTGCGG
*
8095263 AATCATACATGGAATAGTCCTTGCGG
1 ACTCATACATGGAATAGTCCTTGCGG
* *
8095289 ACTCATACAGGGAATAGTCCTTGCAG
1 ACTCATACATGGAATAGTCCTTGCGG
8095315 ACTC
1 ACTC
8095319 TTGCTTAAAG
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
ACTCATACATGGAATAGTCCTTGCGG
Found at i:8096268 original size:16 final size:16
Alignment explanation
Indices: 8096247--8096279 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8096237 TCACTCAGTC
8096247 ATTCTCCTTCATTATT
1 ATTCTCCTTCATTATT
8096263 ATTCTCCTTCATTATT
1 ATTCTCCTTCATTATT
8096279 A
1 A
8096280 GTAGTTTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTCTCCTTCATTATT
Found at i:8100674 original size:39 final size:39
Alignment explanation
Indices: 8100631--8100707 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
8100621 TATAGAAGGG
8100631 TTAAGAACCTTACCTGCTTGCTAGTTTCCCTACTTTTTA
1 TTAAGAACCTTACCTGCTTGCTAGTTTCCCTACTTTTTA
* *
8100670 TTAAGAACCTTACCTGTTTGCTAGTTTTCCTACTTTTT
1 TTAAGAACCTTACCTGCTTGCTAGTTTCCCTACTTTTT
8100708 TTATCTCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.19, C:0.23, G:0.10, T:0.47
Consensus pattern (39 bp):
TTAAGAACCTTACCTGCTTGCTAGTTTCCCTACTTTTTA
Found at i:8104939 original size:12 final size:12
Alignment explanation
Indices: 8104922--8104946 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8104912 CATAAGACTT
8104922 CCAACTTTGAAG
1 CCAACTTTGAAG
8104934 CCAACTTTGAAG
1 CCAACTTTGAAG
8104946 C
1 C
8104947 ATATGGAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (12 bp):
CCAACTTTGAAG
Found at i:8121387 original size:18 final size:18
Alignment explanation
Indices: 8121364--8121403 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
8121354 TTTACCTACA
*
8121364 CGTTTAAAATAATAAACG
1 CGTTTAAAACAATAAACG
8121382 CGTTTAAAACAATAAACG
1 CGTTTAAAACAATAAACG
8121400 CGTT
1 CGTT
8121404 AAGTTTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (18 bp):
CGTTTAAAACAATAAACG
Found at i:8125627 original size:2 final size:2
Alignment explanation
Indices: 8125620--8125667 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
8125610 GGTTTAACCG
8125620 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8125662 AT AT AT
1 AT AT AT
8125668 GGTTGTCATG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8128593 original size:20 final size:20
Alignment explanation
Indices: 8128570--8128645 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
8128560 TAAATTTTAA
* *
8128570 TTCATTCATATAACCAGTAG
1 TTCATCCATATAAACAGTAG
* *
8128590 TTCATCCGTATAAATAGTAG
1 TTCATCCATATAAACAGTAG
* *
8128610 TTCAT-CAGTA-ATAAGAGTAA
1 TTCATCCA-TATA-AACAGTAG
8128630 TTCATCCATATAAACA
1 TTCATCCATATAAACA
8128646 CATATCTTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
19 2 0.05
20 39 0.89
21 3 0.07
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (20 bp):
TTCATCCATATAAACAGTAG
Found at i:8128872 original size:23 final size:23
Alignment explanation
Indices: 8128821--8128873 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
8128811 TAAACAGTTA
8128821 AGCTG-AACGGTAAGCTCATACG
1 AGCTGAAACGGTAAGCTCATACG
* *
8128843 AGTTGAAACGGTAAGCTCCA-ATG
1 AGCTGAAACGGTAAGCT-CATACG
8128866 AGCTGAAA
1 AGCTGAAA
8128874 AATAATAAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 4 0.15
23 20 0.77
24 2 0.08
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (23 bp):
AGCTGAAACGGTAAGCTCATACG
Found at i:8129168 original size:35 final size:36
Alignment explanation
Indices: 8129109--8129179 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
8129099 AGTACATACA
8129109 TTTAAATACTCAATTCGCACACCTAATGCATATTAT
1 TTTAAATACTCAATTCGCACACCTAATGCATATTAT
*
8129145 TTTAAATACTC-ATTCGCATACCTAATGCATATTAT
1 TTTAAATACTCAATTCGCACACCTAATGCATATTAT
8129180 CATATCGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 23 0.68
36 11 0.32
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (36 bp):
TTTAAATACTCAATTCGCACACCTAATGCATATTAT
Found at i:8135025 original size:20 final size:19
Alignment explanation
Indices: 8135002--8135099 Score: 72
Period size: 20 Copynumber: 4.9 Consensus size: 19
8134992 AATATATTCA
* *
8135002 TATAACCAGTAGTTCATCTG
1 TATAA-CAGTAATTCATCAG
* **
8135022 TATAAATAGTAGCTCATCAG
1 TAT-AACAGTAATTCATCAG
* *
8135042 TAATAATAGTAATTCATCCG
1 T-ATAACAGTAATTCATCAG
8135062 TATTAACAGTAATTCATCAATG
1 TA-TAACAGTAATTCATC-A-G
8135084 T-TAACAGTAATTCATC
1 TATAACAGTAATTCATC
8135100 CATATAAACA
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
19 1 0.02
20 58 0.89
21 4 0.06
22 2 0.03
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (19 bp):
TATAACAGTAATTCATCAG
Found at i:8135109 original size:20 final size:20
Alignment explanation
Indices: 8135049--8135109 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
8135039 CAGTAATAAT
*
8135049 AGTAATTCATCCGTATTAAC
1 AGTAATTCATCCATATTAAC
* *
8135069 AGTAATTCATCAATGTTAAC
1 AGTAATTCATCCATATTAAC
*
8135089 AGTAATTCATCCATATAAAC
1 AGTAATTCATCCATATTAAC
8135109 A
1 A
8135110 CATATCTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (20 bp):
AGTAATTCATCCATATTAAC
Found at i:8135322 original size:23 final size:23
Alignment explanation
Indices: 8135276--8135332 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
8135266 CTGAGTTGAT
* *
8135276 AAACAGTAAGCTCTATTGAGCTG
1 AAACAGTAAGCTCTATCGAACTG
* *
8135299 AAACTGTAAGCTTTATCGAACTG
1 AAACAGTAAGCTCTATCGAACTG
*
8135322 -AACAATAAGCT
1 AAACAGTAAGCT
8135333 TATAAGAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 9 0.32
23 19 0.68
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.26
Consensus pattern (23 bp):
AAACAGTAAGCTCTATCGAACTG
Found at i:8148596 original size:39 final size:39
Alignment explanation
Indices: 8148553--8148731 Score: 277
Period size: 39 Copynumber: 4.6 Consensus size: 39
8148543 ATCGTGATCT
** * *
8148553 GAAGCCCGAAATCTAGCTGAAGCACATAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
8148592 GAAGCCCGAAGGCTAACTAAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
8148631 GAAGCCCGGAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
* *
8148670 GAAGCCCGGAGGCTAACTGAAGCACATAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
8148709 GAAGCCCGAAAGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
8148732 TCATCAGAGC
Statistics
Matches: 130, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 130 1.00
ACGTcount: A:0.39, C:0.23, G:0.25, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:8164525 original size:37 final size:37
Alignment explanation
Indices: 8164474--8164563 Score: 101
Period size: 37 Copynumber: 2.4 Consensus size: 37
8164464 ATCATTCAGA
*
8164474 ATAACGGTAAGATTTGCTTAG-TTAAGCTCCATTTAGT
1 ATAACGATAAGATTTGC-TAGATTAAGCTCCATTTAGT
* * * *
8164511 ATAACGATATGATTTGCTCGATTGAGCTTCATTTAGT
1 ATAACGATAAGATTTGCTAGATTAAGCTCCATTTAGT
* *
8164548 ATAACAATAGGATTTG
1 ATAACGATAAGATTTG
8164564 GCTCGATAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
36 2 0.04
37 43 0.96
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (37 bp):
ATAACGATAAGATTTGCTAGATTAAGCTCCATTTAGT
Found at i:8173534 original size:44 final size:44
Alignment explanation
Indices: 8173484--8173572 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
8173474 TGTACTGGGA
*
8173484 TACTTCGACCATGGGTTGATGAGGCACTAAT-AGTGTCGTACTAT
1 TACTTCGACCATGGGTCGATGAGGCACT-ATGAGTGTCGTACTAT
** * * *
8173528 TACTTCGACTTTGTGTCGATGAGGCACTTTGTGTGTCGTACTAT
1 TACTTCGACCATGGGTCGATGAGGCACTATGAGTGTCGTACTAT
8173572 T
1 T
8173573 TTCAATGCTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 1 0.03
44 37 0.97
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.37
Consensus pattern (44 bp):
TACTTCGACCATGGGTCGATGAGGCACTATGAGTGTCGTACTAT
Found at i:8177917 original size:30 final size:30
Alignment explanation
Indices: 8177881--8177940 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
8177871 ACTTAACAAG
8177881 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
8177911 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
8177941 TAATAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.57, C:0.12, G:0.03, T:0.28
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:8184519 original size:32 final size:32
Alignment explanation
Indices: 8184441--8184504 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
8184431 TCTTCGACAT
8184441 GGCCACATATTTGTACAGTTTGCATTTGAAGC
1 GGCCACATATTTGTACAGTTTGCATTTGAAGC
8184473 GGCCACATATTTGTACAGTTTGCATTTGAAGC
1 GGCCACATATTTGTACAGTTTGCATTTGAAGC
8184505 AATTCCCCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (32 bp):
GGCCACATATTTGTACAGTTTGCATTTGAAGC
Found at i:8188171 original size:36 final size:36
Alignment explanation
Indices: 8188131--8188200 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
8188121 CTCAATTTAA
8188131 TCATGCATGTGTTCTATTCATTGAAAAGAAATTGAT
1 TCATGCATGTGTTCTATTCATTGAAAAGAAATTGAT
*
8188167 TCATGCATGTGTTGTATTCATTGAAAAGAAATTG
1 TCATGCATGTGTTCTATTCATTGAAAAGAAATTG
8188201 GTATAAGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (36 bp):
TCATGCATGTGTTCTATTCATTGAAAAGAAATTGAT
Found at i:8194940 original size:24 final size:24
Alignment explanation
Indices: 8194908--8194962 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
8194898 GTTAGGACAT
*
8194908 ATTAAATTCATCCACCAGCAGCTC
1 ATTAAATTCATCAACCAGCAGCTC
* *
8194932 ATTAAATTCGTCAACCAGTAGCTC
1 ATTAAATTCATCAACCAGCAGCTC
8194956 ATTAAAT
1 ATTAAAT
8194963 CTATCTAGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.29
Consensus pattern (24 bp):
ATTAAATTCATCAACCAGCAGCTC
Done.