Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 41 of 292
Found at i:11272826 original size:42 final size:41
Alignment explanation
Indices: 11272775--11272855 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 41
11272765 AAAGATCATG
*
11272775 TTTTTTAGCGGCATTTGTGAGAAAAACGT-CGCTAAAGGTTCA
1 TTTTATAGCGGCATTTGT-AGAAAAA-GTCCGCTAAAGGTTCA
* *
11272817 TTTTATAGCGGCGTTTGTAGGAAAAGTGCCGCTAAAGGT
1 TTTTATAGCGGCATTTGTAGAAAAAGT-CCGCTAAAGGT
11272856 CATGACTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 2 0.06
41 6 0.18
42 26 0.76
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (41 bp):
TTTTATAGCGGCATTTGTAGAAAAAGTCCGCTAAAGGTTCA
Found at i:11272956 original size:43 final size:43
Alignment explanation
Indices: 11272843--11272958 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 43
11272833 GTAGGAAAAG
* * *
11272843 TGCCGCT-AAAGGTCATGACTTTTAGTGACGCTTTTCCCACAAA
1 TGCCGCTAAAAGG-CATGACTTTTAGCGGCGCTTTCCCCACAAA
* * *
11272886 CGCTGCCAAAA-GCATTGACTTTTAGCGGCGC-TTCCCCAACAAA
1 TGCCGCTAAAAGGCA-TGACTTTTAGCGGCGCTTTCCCC-ACAAA
11272929 TGCCGCTAAAAGGCATGACTTTTAGCGGCG
1 TGCCGCTAAAAGGCATGACTTTTAGCGGCG
11272959 TTTTTTGTGG
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
42 7 0.12
43 47 0.78
44 6 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (43 bp):
TGCCGCTAAAAGGCATGACTTTTAGCGGCGCTTTCCCCACAAA
Found at i:11275919 original size:47 final size:46
Alignment explanation
Indices: 11275867--11276058 Score: 188
Period size: 47 Copynumber: 4.1 Consensus size: 46
11275857 TGGTTAGACC
* * *
11275867 ATGGCAACATGTGATATGTGATTTCTGTATAAGACCATAGCTGGGAT
1 ATGGCATCATGTGATATGTG-CTTCCGTATAAGACCATAGCTGGGAT
** * * *
11275914 ATGGCATTGGTGTGATATGAGCTTCCATATAAGACCATATCTGGGAT
1 ATGGCA-TCATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGAT
* * * * *
11275961 ATGGCATCGGTATGATATGTGCTTCTGTGTAAGACCATATCTGGGAT
1 ATGGCATC-ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGAT
* * * *
11276008 ATGGCATCACTGTGATATGTG-ATCCGTGTAAGACCATGGCTGGGCT
1 ATGGCATCA-TGTGATATGTGCTTCCGTATAAGACCATAGCTGGGAT
11276054 ATGGC
1 ATGGC
11276059 TTCGTTGTGT
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
46 26 0.21
47 85 0.70
48 10 0.08
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (46 bp):
ATGGCATCATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGAT
Found at i:11279202 original size:12 final size:12
Alignment explanation
Indices: 11279185--11279209 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11279175 AAGATGAGCA
11279185 TGATGAGCATAT
1 TGATGAGCATAT
11279197 TGATGAGCATAT
1 TGATGAGCATAT
11279209 T
1 T
11279210 AGAGTAGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (12 bp):
TGATGAGCATAT
Found at i:11281772 original size:2 final size:2
Alignment explanation
Indices: 11281765--11281793 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11281755 TTGTTTGAAT
11281765 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
11281794 TTTTTGTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:11284281 original size:25 final size:25
Alignment explanation
Indices: 11284253--11284302 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
11284243 TAACACTTAA
11284253 CCCAAAAAAAGGAAATTTTCTTCCT
1 CCCAAAAAAAGGAAATTTTCTTCCT
11284278 CCCAAAAAAAGGAAATTTTCTTCCT
1 CCCAAAAAAAGGAAATTTTCTTCCT
11284303 TACACACCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (25 bp):
CCCAAAAAAAGGAAATTTTCTTCCT
Found at i:11293080 original size:3 final size:3
Alignment explanation
Indices: 11293072--11293108 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
11293062 ACTGAAACTC
11293072 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
11293109 TGCAACAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:11294988 original size:26 final size:24
Alignment explanation
Indices: 11294917--11294990 Score: 69
Period size: 26 Copynumber: 2.9 Consensus size: 24
11294907 GATAAATTTT
*
11294917 ATATTCTATTAATTTAATAGATT-TA
1 ATATTATATTAATTTAAT--ATTATA
* *
11294942 ATATTAAATTTAATATAATATTATCA
1 ATATTATA-TTAATTTAATATTAT-A
11294968 ATATTATATTAAATTTAATATTA
1 ATATTATATT-AATTTAATATTA
11294991 AAGTGATTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
24 3 0.08
25 9 0.22
26 28 0.70
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (24 bp):
ATATTATATTAATTTAATATTATA
Found at i:11319811 original size:22 final size:23
Alignment explanation
Indices: 11319786--11319836 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
11319776 AAAAAATCTT
11319786 AAAATTACAGTAAAATA-TTTTAA
1 AAAATTA-AGTAAAATATTTTTAA
**
11319809 AAAATTATTTAAAATATTTTTAA
1 AAAATTAAGTAAAATATTTTTAA
11319832 AAAAT
1 AAAAT
11319837 AAATCTGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
AAAATTAAGTAAAATATTTTTAA
Found at i:11319819 original size:12 final size:11
Alignment explanation
Indices: 11319797--11319836 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
11319787 AAATTACAGT
11319797 AAAATATTTTAA
1 AAAAT-TTTTAA
11319809 AAAATTATTTAA
1 AAAATT-TTTAA
*
11319821 AATATTTTTAA
1 AAAATTTTTAA
11319832 AAAAT
1 AAAAT
11319837 AAATCTGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
AAAATTTTTAA
Found at i:11321816 original size:31 final size:30
Alignment explanation
Indices: 11321778--11321838 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 30
11321768 AAAACCAACC
*
11321778 TATAATTACTTGTTTAGTGGTAGTTTTAAAG
1 TATAATTACTTGTTTAGTAGTAG-TTTAAAG
11321809 TATAATTACTTGTTTAGTAGTAGTTTAAAG
1 TATAATTACTTGTTTAGTAGTAGTTTAAAG
11321839 ACTTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 7 0.24
31 22 0.76
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.48
Consensus pattern (30 bp):
TATAATTACTTGTTTAGTAGTAGTTTAAAG
Found at i:11324418 original size:16 final size:16
Alignment explanation
Indices: 11324397--11324435 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
11324387 CCACTAAAAA
11324397 AACCCAAATACCCAAC
1 AACCCAAATACCCAAC
11324413 AACCCAAATACCCAAC
1 AACCCAAATACCCAAC
11324429 AACCCAA
1 AACCCAA
11324436 TTACACCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.51, C:0.44, G:0.00, T:0.05
Consensus pattern (16 bp):
AACCCAAATACCCAAC
Found at i:11325084 original size:11 final size:11
Alignment explanation
Indices: 11325068--11325096 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
11325058 TTCCCTCCTC
11325068 CTCTCCCTCTT
1 CTCTCCCTCTT
11325079 CTCTCCCTCTT
1 CTCTCCCTCTT
11325090 CTCTCCC
1 CTCTCCC
11325097 CCCCTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (11 bp):
CTCTCCCTCTT
Found at i:11325585 original size:3 final size:3
Alignment explanation
Indices: 11325567--11325716 Score: 119
Period size: 3 Copynumber: 49.0 Consensus size: 3
11325557 TCATTCCTAA
* *
11325567 TAT TAT TAA TAC TAT TAT T-T CTAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * ** *
11325612 TAT TAT TAT TAT TAT TAT TGT TTT TAT TAA TAT TCT GGT TAT TAAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
*
11325658 TAT TAT TAT T-T TAAT GTAT TAT TAT T-T CTAGT TAT TAT TAT T-T CTAA
1 TAT TAT TAT TAT T-AT -TAT TAT TAT TAT -TA-T TAT TAT TAT TAT -TAT
11325705 TAT TAT TAT TAT
1 TAT TAT TAT TAT
11325717 ATATAATATT
Statistics
Matches: 119, Mismatches: 17, Indels: 22
0.75 0.11 0.14
Matches are distributed among these distances:
2 5 0.04
3 104 0.87
4 8 0.07
5 2 0.02
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:11325677 original size:16 final size:16
Alignment explanation
Indices: 11325658--11325714 Score: 82
Period size: 16 Copynumber: 3.6 Consensus size: 16
11325648 GGTTATTAAA
11325658 TATTATTATTT-TAAT
1 TATTATTATTTCTAAT
*
11325673 GTATTATTATTTCTAGT
1 -TATTATTATTTCTAAT
11325690 TATTATTATTTCTAA-
1 TATTATTATTTCTAAT
11325705 TATTATTATT
1 TATTATTATT
11325715 ATATATAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
15 10 0.26
16 25 0.66
17 3 0.08
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (16 bp):
TATTATTATTTCTAAT
Found at i:11325723 original size:18 final size:18
Alignment explanation
Indices: 11325689--11325727 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
11325679 TTATTTCTAG
* *
11325689 TTATTATTATTTCTAATA
1 TTATTATTATATATAATA
11325707 TTATTATTATATATAATA
1 TTATTATTATATATAATA
11325725 TTA
1 TTA
11325728 GTGTGTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
TTATTATTATATATAATA
Found at i:11326001 original size:6 final size:7
Alignment explanation
Indices: 11325981--11326014 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
11325971 CATTTCTTCA
11325981 TTATTTT
1 TTATTTT
11325988 TTATTTT
1 TTATTTT
11325995 TTA-TTT
1 TTATTTT
11326001 TTATTTT
1 TTATTTT
11326008 TTATTTT
1 TTATTTT
11326015 AATACTCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTATTTT
Found at i:11326003 original size:13 final size:13
Alignment explanation
Indices: 11325985--11326014 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
11325975 TCTTCATTAT
11325985 TTTTTATTTTTTA
1 TTTTTATTTTTTA
11325998 TTTTTATTTTTTA
1 TTTTTATTTTTTA
11326011 TTTT
1 TTTT
11326015 AATACTCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:11326103 original size:18 final size:17
Alignment explanation
Indices: 11326076--11326117 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
11326066 TTTTTTTCTT
11326076 TATATATTATAT-TATTTG
1 TATATATTAT-TGTA-TTG
*
11326094 TATATTTTATTGTATTG
1 TATATATTATTGTATTG
11326111 TATATAT
1 TATATAT
11326118 ATTTTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (17 bp):
TATATATTATTGTATTG
Found at i:11326311 original size:25 final size:25
Alignment explanation
Indices: 11326273--11326320 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
11326263 ATTATTGTTG
* *
11326273 TTAATATTAGTATATGTATATATCT
1 TTAATATTAGTATAGGTACATATCT
11326298 TTAATATATA-TATAGGTACATAT
1 TTAATAT-TAGTATAGGTACATAT
11326321 TTATGTGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (25 bp):
TTAATATTAGTATAGGTACATATCT
Found at i:11326507 original size:2 final size:2
Alignment explanation
Indices: 11326502--11326534 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
11326492 AATATTATCT
11326502 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11326535 TTTAATAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11327095 original size:16 final size:16
Alignment explanation
Indices: 11327074--11327111 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
11327064 GTCCTTCTCA
11327074 AAAATCAAAAGAATTG
1 AAAATCAAAAGAATTG
11327090 AAAATCAAAAGAATTG
1 AAAATCAAAAGAATTG
11327106 AAAATC
1 AAAATC
11327112 CTCGTGTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.63, C:0.08, G:0.11, T:0.18
Consensus pattern (16 bp):
AAAATCAAAAGAATTG
Found at i:11333984 original size:2 final size:2
Alignment explanation
Indices: 11333977--11334007 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
11333967 CATATTATCT
11333977 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11334008 TAATAGCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11334567 original size:16 final size:16
Alignment explanation
Indices: 11334546--11334599 Score: 108
Period size: 16 Copynumber: 3.4 Consensus size: 16
11334536 GTCCTTCTCA
11334546 AAAATCAAAAGAATTG
1 AAAATCAAAAGAATTG
11334562 AAAATCAAAAGAATTG
1 AAAATCAAAAGAATTG
11334578 AAAATCAAAAGAATTG
1 AAAATCAAAAGAATTG
11334594 AAAATC
1 AAAATC
11334600 CTCGTGTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.63, C:0.07, G:0.11, T:0.19
Consensus pattern (16 bp):
AAAATCAAAAGAATTG
Found at i:11335265 original size:75 final size:77
Alignment explanation
Indices: 11335165--11335309 Score: 222
Period size: 75 Copynumber: 1.9 Consensus size: 77
11335155 ACAATTATTT
* ** *
11335165 AACATTGTTTTCTTACCAAATTAATATTTAAATACTATTTTGTATTTGTTTTTCAAATTAAACTA
1 AACATTGTTTTCTTACCAAATTAATATTTAAATACTACTTTGTATTAATTTATCAAATTAAACTA
11335230 AAAATGTTACCA
66 AAAATGTTACCA
* *
11335242 AACATT-TTTT-TTATCAAATTAATATTTAACTACTACTTTGTATTAATTTATCAAATTAAACTA
1 AACATTGTTTTCTTACCAAATTAATATTTAAATACTACTTTGTATTAATTTATCAAATTAAACTA
11335305 AAAAT
66 AAAAT
11335310 ATTTCTAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
75 52 0.84
76 4 0.06
77 6 0.10
ACGTcount: A:0.40, C:0.11, G:0.03, T:0.46
Consensus pattern (77 bp):
AACATTGTTTTCTTACCAAATTAATATTTAAATACTACTTTGTATTAATTTATCAAATTAAACTA
AAAATGTTACCA
Found at i:11336868 original size:22 final size:24
Alignment explanation
Indices: 11336834--11336877 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
11336824 TAATATTCAA
*
11336834 TATATATTGAAATTTTAAAAAATG
1 TATATATTGAAATTTAAAAAAATG
11336858 TATATA-T-AAATTTAAAAAAA
1 TATATATTGAAATTTAAAAAAA
11336878 CTAAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 1 0.05
24 6 0.32
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (24 bp):
TATATATTGAAATTTAAAAAAATG
Found at i:11341485 original size:8 final size:8
Alignment explanation
Indices: 11341472--11341504 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
11341462 GAAACTCTTG
11341472 AAATTATA
1 AAATTATA
11341480 AAATTATA
1 AAATTATA
11341488 AAATTA-A
1 AAATTATA
11341495 TAAATTATA
1 -AAATTATA
11341504 A
1 A
11341505 GTTTTGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 1 0.04
8 21 0.91
9 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AAATTATA
Found at i:11341845 original size:37 final size:37
Alignment explanation
Indices: 11341795--11341868 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
11341785 ATCCTAAAAC
11341795 TTGAGCAAATTTTATAATGTAATATTTATTTTTTTAA
1 TTGAGCAAATTTTATAATGTAATATTTATTTTTTTAA
11341832 TTGAGCAAATTTTATAATGTAATATTTATTTTTTTAA
1 TTGAGCAAATTTTATAATGTAATATTTATTTTTTTAA
11341869 CATGTTAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.54
Consensus pattern (37 bp):
TTGAGCAAATTTTATAATGTAATATTTATTTTTTTAA
Found at i:11342244 original size:40 final size:41
Alignment explanation
Indices: 11342188--11342435 Score: 349
Period size: 41 Copynumber: 6.1 Consensus size: 41
11342178 AAAATCGAAT
* *
11342188 AGATC-GAGCATTAGCGGCATTTTTAACAAAGTGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAACAAAGCGCCGCTAA
* * *
11342228 GGATC-GAGAATTAGCGGCGTTTTTAGCAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAACAAAGCGCCGCTAA
* *
11342268 AGATCTGAGCATTAGCGGCGTTTTTAGCAAAGCGTCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAACAAAGCGCCGCTAA
*
11342309 AGATC-GAGCATTAGCGGCGTTTTTAGCAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAACAAAGCGCCGCTAA
* * *
11342349 AGATCTGAGCATTAGCAGCGTTTCTAAGAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAACAAAGCGCCGCTAA
* * *
11342390 AGATCTGAGCATTAGCGGCGGTTTTAAGAAAGCGCCGCTAG
1 AGATCTGAGCATTAGCGGCGTTTTTAACAAAGCGCCGCTAA
11342431 AGATC
1 AGATC
11342436 AAGCAGAACT
Statistics
Matches: 189, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
40 78 0.41
41 111 0.59
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (41 bp):
AGATCTGAGCATTAGCGGCGTTTTTAACAAAGCGCCGCTAA
Found at i:11342328 original size:81 final size:81
Alignment explanation
Indices: 11342188--11342435 Score: 358
Period size: 81 Copynumber: 3.1 Consensus size: 81
11342178 AAAATCGAAT
* * * * *
11342188 AGATC-GAGCATTAGCGGCATTTTTAACAAAGTGCCGCTAAGGATCGAGAATTAGCGGCGTTTTT
1 AGATCTGAGCATTAGCGGCGTTTTTAGCAAAGCGCCGCTAAAGATCGAGCATTAGCGGCGTTTTT
11342252 AGCAAAGCGCCGCTAA
66 AGCAAAGCGCCGCTAA
*
11342268 AGATCTGAGCATTAGCGGCGTTTTTAGCAAAGCGTCGCTAAAGATCGAGCATTAGCGGCGTTTTT
1 AGATCTGAGCATTAGCGGCGTTTTTAGCAAAGCGCCGCTAAAGATCGAGCATTAGCGGCGTTTTT
11342333 AGCAAAGCGCCGCTAA
66 AGCAAAGCGCCGCTAA
* *
11342349 AGATCTGAGCATTAGCAGCGTTTCTAAG-AAAGCGCCGCTAAAGATCTGAGCATTAGCGGCGGTT
1 AGATCTGAGCATTAGCGGCGTTT-TTAGCAAAGCGCCGCTAAAGATC-GAGCATTAGCGGC-GTT
* *
11342413 TTAAG-AAAGCGCCGCTAG
63 TTTAGCAAAGCGCCGCTAA
11342431 AGATC
1 AGATC
11342436 AAGCAGAACT
Statistics
Matches: 153, Mismatches: 11, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
80 5 0.03
81 108 0.71
82 33 0.22
83 7 0.05
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (81 bp):
AGATCTGAGCATTAGCGGCGTTTTTAGCAAAGCGCCGCTAAAGATCGAGCATTAGCGGCGTTTTT
AGCAAAGCGCCGCTAA
Found at i:11343075 original size:29 final size:29
Alignment explanation
Indices: 11343042--11343107 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
11343032 TTAAGGGTTG
*
11343042 GGGTTTAAGGGTTATGGGCTAGTGGTTAA
1 GGGTTTAAGGGTTATGGGCTAATGGTTAA
* * *
11343071 GGGTTTATGGGTTATGGGTTAATGGTTTA
1 GGGTTTAAGGGTTATGGGCTAATGGTTAA
*
11343100 GGGGTTAA
1 GGGTTTAA
11343108 TGCTTAGGGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.20, C:0.02, G:0.41, T:0.38
Consensus pattern (29 bp):
GGGTTTAAGGGTTATGGGCTAATGGTTAA
Found at i:11343114 original size:14 final size:15
Alignment explanation
Indices: 11343071--11343119 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
11343061 TAGTGGTTAA
* * *
11343071 GGGTTTATGGGTTAT
1 GGGTTAATGGCTTAG
*
11343086 GGGTTAATGGTTTAG
1 GGGTTAATGGCTTAG
11343101 GGGTTAAT-GCTTAG
1 GGGTTAATGGCTTAG
11343115 GGGTT
1 GGGTT
11343120 TTTATTTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 10 0.33
15 20 0.67
ACGTcount: A:0.16, C:0.02, G:0.41, T:0.41
Consensus pattern (15 bp):
GGGTTAATGGCTTAG
Found at i:11343391 original size:28 final size:28
Alignment explanation
Indices: 11343354--11343453 Score: 97
Period size: 28 Copynumber: 3.8 Consensus size: 28
11343344 TAGGGGATAT
*
11343354 ATATACTTTAAGGTTTAAGGTTATAGGG
1 ATATAGTTTAAGGTTTAAGGTTATAGGG
*
11343382 ATATAGTTTAGGGTTT-A-G-----GGG
1 ATATAGTTTAAGGTTTAAGGTTATAGGG
* * *
11343403 ACATATTTTAGGGTTTAAGGTTATAGGG
1 ATATAGTTTAAGGTTTAAGGTTATAGGG
11343431 ATATAGTTTAATGGTTTAAGGTT
1 ATATAGTTTAA-GGTTTAAGGTT
11343454 TACAATTTTG
Statistics
Matches: 57, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
21 17 0.30
22 1 0.02
23 1 0.02
26 1 0.02
27 1 0.02
28 25 0.44
29 11 0.19
ACGTcount: A:0.29, C:0.02, G:0.28, T:0.41
Consensus pattern (28 bp):
ATATAGTTTAAGGTTTAAGGTTATAGGG
Found at i:11343403 original size:21 final size:20
Alignment explanation
Indices: 11343366--11343419 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
11343356 ATACTTTAAG
* *
11343366 GTTTAAGGTTATAGGGATATA
1 GTTTAGGGTT-TAGGGACATA
11343387 GTTTAGGGTTTAGGGGACATA
1 GTTTAGGGTTTA-GGGACATA
*
11343408 TTTTAGGGTTTA
1 GTTTAGGGTTTA
11343420 AGGTTATAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.26, C:0.02, G:0.31, T:0.41
Consensus pattern (20 bp):
GTTTAGGGTTTAGGGACATA
Found at i:11343581 original size:28 final size:29
Alignment explanation
Indices: 11343535--11343601 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 29
11343525 AATTCATACA
* *
11343535 TTTTGTGG-TTAAGGCTTAGGGGTTATTG
1 TTTTGTGGTTTAAGGCTTAGGGGATATAG
*
11343563 TTTTGTGGTTTATGG-TTAGGGGATATAG
1 TTTTGTGGTTTAAGGCTTAGGGGATATAG
*
11343591 -TTTATGGTTTA
1 TTTTGTGGTTTA
11343602 GAGGATATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 10 0.29
28 19 0.56
29 5 0.15
ACGTcount: A:0.16, C:0.01, G:0.33, T:0.49
Consensus pattern (29 bp):
TTTTGTGGTTTAAGGCTTAGGGGATATAG
Found at i:11343607 original size:21 final size:21
Alignment explanation
Indices: 11343570--11343631 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
11343560 TTGTTTTGTG
*
11343570 GTTTATGG-TTAGGGGATATA
1 GTTTATGGTTTAGAGGATATA
11343590 GTTTATGGTTTAGAGGATATA
1 GTTTATGGTTTAGAGGATATA
* * *
11343611 TTTTAGGGTTTA-AGGTTATA
1 GTTTATGGTTTAGAGGATATA
11343631 G
1 G
11343632 GGATATAGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
20 15 0.42
21 21 0.58
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.44
Consensus pattern (21 bp):
GTTTATGGTTTAGAGGATATA
Found at i:11343627 original size:28 final size:29
Alignment explanation
Indices: 11343590--11343661 Score: 94
Period size: 28 Copynumber: 2.5 Consensus size: 29
11343580 AGGGGATATA
* *
11343590 GTTTATGGTTTAGAGGATATA-TTTTAGG
1 GTTTAAGGTTTAGAGGATATAGTTTAAGG
*
11343618 GTTTAAGGTTATAG-GGATATAGTTTAATG
1 GTTTAAGGTT-TAGAGGATATAGTTTAAGG
11343647 GTTTAAGGTTTAGAG
1 GTTTAAGGTTTAGAG
11343662 TTTTGATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
28 19 0.50
29 19 0.50
ACGTcount: A:0.28, C:0.00, G:0.29, T:0.43
Consensus pattern (29 bp):
GTTTAAGGTTTAGAGGATATAGTTTAAGG
Found at i:11344350 original size:6 final size:6
Alignment explanation
Indices: 11344339--11344374 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
11344329 TGACTTTCTC
*
11344339 CCCTCT CCCTCT CCCTCT CCCTCC CCCTCT CCCTCT
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
11344375 TTCTGTCTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (6 bp):
CCCTCT
Found at i:11346229 original size:14 final size:13
Alignment explanation
Indices: 11346206--11346235 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
11346196 ATTACTATAA
11346206 TAATTATATGAAG
1 TAATTATATGAAG
11346219 TAATATATATGAAG
1 TAAT-TATATGAAG
11346233 TAA
1 TAA
11346236 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:11348966 original size:40 final size:40
Alignment explanation
Indices: 11348921--11349050 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
11348911 CGGAATACAA
11348921 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
11348961 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
11349001 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
11349041 CCGGATATAA
1 CCGGATATAA
11349051 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:11349065 original size:40 final size:40
Alignment explanation
Indices: 11348921--11349084 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
11348911 CGGAATACAA
* **
11348921 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
11348961 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
11349001 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
11349041 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
11349081 CCGG
1 CCGG
11349085 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:11357030 original size:40 final size:40
Alignment explanation
Indices: 11356985--11357114 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
11356975 CGGAATACAA
11356985 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
11357025 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
11357065 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
11357105 CCGGATATAA
1 CCGGATATAA
11357115 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:11357129 original size:40 final size:40
Alignment explanation
Indices: 11356985--11357148 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
11356975 CGGAATACAA
* **
11356985 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
11357025 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
11357065 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
11357105 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
11357145 CCGG
1 CCGG
11357149 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:11359311 original size:154 final size:155
Alignment explanation
Indices: 11359030--11359387 Score: 664
Period size: 154 Copynumber: 2.3 Consensus size: 155
11359020 TAAGGTATGT
11359030 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTTG
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTTG
11359095 AAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTAC
66 AAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTAC
11359160 AACAATAGCTGAGCTTGTCCATTCC
131 AACAATAGCTGAGCTTGTCCATTCC
11359185 -TTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTTG
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTTG
11359249 AAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTAC
66 AAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTAC
11359314 AACAATAGCTGAGCTTGTCCATTCC
131 AACAATAGCTGAGCTTGTCCATTCC
*
11359339 TTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACGTGAC
1 ----TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGAC
11359388 GGGTTGCCTT
Statistics
Matches: 197, Mismatches: 1, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
154 154 0.78
159 43 0.22
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.38
Consensus pattern (155 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTTG
AAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTAC
AACAATAGCTGAGCTTGTCCATTCC
Found at i:11364225 original size:25 final size:28
Alignment explanation
Indices: 11364176--11364226 Score: 72
Period size: 25 Copynumber: 1.9 Consensus size: 28
11364166 GGTTCGTTAG
11364176 GATGTAGATGAAGATATTTACGATTTAT
1 GATGTAGATGAAGATATTTACGATTTAT
*
11364204 GATGTAG-T-AAGAT-TTTATGATTT
1 GATGTAGATGAAGATATTTACGATTT
11364227 TTTATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 9 0.41
26 5 0.23
27 1 0.05
28 7 0.32
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (28 bp):
GATGTAGATGAAGATATTTACGATTTAT
Found at i:11364840 original size:26 final size:26
Alignment explanation
Indices: 11364803--11364886 Score: 159
Period size: 26 Copynumber: 3.2 Consensus size: 26
11364793 TGATACAAAT
*
11364803 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11364829 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11364855 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
11364881 TGATAA
1 TGATAA
11364887 GAATATCATG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.33, C:0.04, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:11366914 original size:136 final size:137
Alignment explanation
Indices: 11366668--11366953 Score: 502
Period size: 136 Copynumber: 2.1 Consensus size: 137
11366658 GAGTAGTCTC
11366668 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
11366733 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
11366798 ACTGTTA
131 ACTGTTA
*
11366805 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* * *
11366869 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
11366934 ACTGTTA
131 ACTGTTA
**
11366941 CCTGAATGGGCTT
1 CCCAAATGGGCTT
11366954 AGGCCCAATA
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 122 0.86
137 20 0.14
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTGTTA
Found at i:11369473 original size:44 final size:43
Alignment explanation
Indices: 11369425--11369688 Score: 268
Period size: 44 Copynumber: 6.2 Consensus size: 43
11369415 ACTGGGCAAA
11369425 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGATCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGG-TCT
*
11369469 TTAGCGGCATTTTTTAAAAGAGCGCCGCTAAAAGTACAGGTCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCT
* * * * * *
11369512 ATAGCGGC-GTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCT
* *
11369554 TTAGCGGCGTTTTTATAAAAAAGCGCTGCTAAAAGTACAGGTCT
1 TTAGCGGCATTTTT-TAAAAAAGCGCCGCTAAAAGTACAGGTCT
* * * * * * *
11369598 ATAGCTGTATTTTTT--ACAAGCGCCGCTAAAGGTCCTGGT-T
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCT
* * * * * *
11369638 TCTAGCGGC-GTTTTTATAAGAGCGCCGCTAAAGGTCCTGGTCT
1 T-TAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCT
11369681 TTAGCGGC
1 TTAGCGGC
11369689 GCTTTTTGAT
Statistics
Matches: 184, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
40 6 0.03
41 24 0.13
42 64 0.35
43 17 0.09
44 73 0.40
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCT
Found at i:11369526 original size:42 final size:41
Alignment explanation
Indices: 11369425--11369695 Score: 247
Period size: 42 Copynumber: 6.3 Consensus size: 41
11369415 ACTGGGCAAA
*
11369425 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGATCT
1 TTAGCGGC-GTTTTT-AAAAAGCGCCGCTAAAAGTACAGG-TCT
*
11369469 TTAGCGGCATTTTTTAAAAGAGCGCCGCTAAAAGTACAGGTCT
1 TTAGCGGC-GTTTTTAAAA-AGCGCCGCTAAAAGTACAGGTCT
* * * *
11369512 ATAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCGTTTTTA-AAAAGCGCCGCTAAAAGTACAGGTCT
*
11369554 TTAGCGGCGTTTTTATAAAAAAGCGCTGCTAAAAGTACAGGTCT
1 TTAGCGGCG-TTTT-T-AAAAAGCGCCGCTAAAAGTACAGGTCT
* * ** * * * * *
11369598 ATAGCTGTATTTTTTACAAGCGCCGCTAAAGGTCCTGGT-T
1 TTAGCGGCGTTTTTAAAAAGCGCCGCTAAAAGTACAGGTCT
* * * *
11369638 TCTAGCGGCGTTTTTATAAGAGCGCCGCTAAAGGTCCTGGTCT
1 T-TAGCGGCGTTTTTA-AAAAGCGCCGCTAAAAGTACAGGTCT
11369681 TTAGCGGCGCTTTTT
1 TTAGCGGCG-TTTTT
11369696 GATCCTGTTC
Statistics
Matches: 191, Mismatches: 27, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
40 1 0.01
41 29 0.15
42 65 0.34
43 32 0.17
44 63 0.33
45 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (41 bp):
TTAGCGGCGTTTTTAAAAAGCGCCGCTAAAAGTACAGGTCT
Found at i:11369629 original size:85 final size:86
Alignment explanation
Indices: 11369426--11369688 Score: 320
Period size: 86 Copynumber: 3.1 Consensus size: 86
11369416 CTGGGCAAAT
* * * * * *
11369426 TAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGATCTTTAGCGGCATTTTT-TAAAAGA
1 TAGCGGCA-TTTTTATAAAAGCGCCGCTAAAGGTCCTGG-TCTTTAGCGGCGTTTTTATAAAAAA
11369490 GCGCCGCTAAAAGTACAGGTCTA
64 GCGCCGCTAAAAGTACAGGTCTA
*
11369513 TAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTATAAAAAAGC
1 TAGCGGCATTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTATAAAAAAGC
*
11369578 GCTGCTAAAAGTACAGGTCTA
66 GCCGCTAAAAGTACAGGTCTA
* * * *
11369599 TAGCTGTATTTTT-TACAAGCGCCGCTAAAGGTCCTGGT-TTCTAGCGGCGTTTTTAT--AAGAG
1 TAGCGGCATTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTT-TAGCGGCGTTTTTATAAAAAAG
* * * *
11369660 CGCCGCTAAAGGTCCTGGTCTT
65 CGCCGCTAAAAGTACAGGTCTA
11369682 TAGCGGC
1 TAGCGGC
11369689 GCTTTTTGAT
Statistics
Matches: 154, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
83 26 0.17
84 2 0.01
85 55 0.36
86 64 0.42
87 7 0.05
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (86 bp):
TAGCGGCATTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTATAAAAAAGC
GCCGCTAAAAGTACAGGTCTA
Found at i:11369662 original size:127 final size:129
Alignment explanation
Indices: 11369425--11369695 Score: 395
Period size: 127 Copynumber: 2.1 Consensus size: 129
11369415 ACTGGGCAAA
* *
11369425 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGATCTTTAGCGGCATTTTTTAAAAGA
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGATCTATAGCGGCATTTTTTAAAAGA
11369490 GCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
66 GCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* * * *
11369554 TTAGCGGCGTTTTTATAAAAAAGCGCTGCTAAAAGTACAGG-TCTATAGCTGTATTTTTT-ACA-
1 TTAGCGGCGTTTTT-TAAAAAAGCGCCGCTAAAAGTACAGGATCTATAGCGGCATTTTTTAAAAG
* * * * * *
11369616 AGCGCCGCTAAAGGTCCTGGTTTCTAGCGGCGTTTTTATAAGAGCGCCGCTAAAGGTCCTGGTCT
65 AGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
*
11369681 TTAGCGGCGCTTTTT
1 TTAGCGGCGTTTTTT
11369696 GATCCTGTTC
Statistics
Matches: 128, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
126 1 0.01
127 72 0.56
128 2 0.02
129 28 0.22
130 25 0.20
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (129 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGATCTATAGCGGCATTTTTTAAAAGA
GCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
Found at i:11371837 original size:26 final size:26
Alignment explanation
Indices: 11371807--11371860 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
11371797 ATTTAAAGAA
11371807 AATAAACATAATTATCTAAAAAAATT
1 AATAAACATAATTATCTAAAAAAATT
**
11371833 AATAAAGGTAATTATCTAAAAAAATT
1 AATAAACATAATTATCTAAAAAAATT
11371859 AA
1 AA
11371861 CTCAGTAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.30
Consensus pattern (26 bp):
AATAAACATAATTATCTAAAAAAATT
Found at i:11372223 original size:27 final size:27
Alignment explanation
Indices: 11372185--11372250 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
11372175 ATAGTATACA
*
11372185 AGTTGAGCCTATTTG-CTAGGCGCGACT
1 AGTTGAGCCTATTTGAC-AGGCGCAACT
11372212 AGTTGAGCCTATTTGACAGGCGCAACT
1 AGTTGAGCCTATTTGACAGGCGCAACT
* *
11372239 CGTTGTGCCTAT
1 AGTTGAGCCTAT
11372251 CTCAGAGGCG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (27 bp):
AGTTGAGCCTATTTGACAGGCGCAACT
Found at i:11372259 original size:27 final size:27
Alignment explanation
Indices: 11372185--11372261 Score: 66
Period size: 27 Copynumber: 2.9 Consensus size: 27
11372175 ATAGTATACA
* * *
11372185 AGTTGAGCCTATTTGC-TAGGCGCGACT
1 AGTTGAGCCTATCT-CACAGGCGCAACT
* *
11372212 AGTTGAGCCTATTTGACAGGCGCAACT
1 AGTTGAGCCTATCTCACAGGCGCAACT
* * *
11372239 CGTTGTGCCTATCTCAGAGGCGC
1 AGTTGAGCCTATCTCACAGGCGC
11372262 GAATGGTGGG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.27
Consensus pattern (27 bp):
AGTTGAGCCTATCTCACAGGCGCAACT
Found at i:11375573 original size:30 final size:31
Alignment explanation
Indices: 11375523--11375581 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
11375513 TACTAACAAA
* *
11375523 ATAATTATAAAATATATTTTTAAGAAAATAC
1 ATAACTATAAAATATATTTTTAAAAAAATAC
11375554 ATAACTATAAAAT-TATTTTTAAAAAAAT
1 ATAACTATAAAATATATTTTTAAAAAAAT
11375582 TCATGTACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (31 bp):
ATAACTATAAAATATATTTTTAAAAAAATAC
Found at i:11375651 original size:22 final size:21
Alignment explanation
Indices: 11375623--11375665 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
11375613 TATTTGTGGG
**
11375623 TGTTAAATTTTTTTAATTAAAA
1 TGTTAAATAATTTTAA-TAAAA
11375645 TGTTAAATAATTTTAATAAAA
1 TGTTAAATAATTTTAATAAAA
11375666 GCATTTATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (21 bp):
TGTTAAATAATTTTAATAAAA
Found at i:11376318 original size:19 final size:19
Alignment explanation
Indices: 11376296--11376379 Score: 59
Period size: 19 Copynumber: 4.3 Consensus size: 19
11376286 CAAAAATTTA
11376296 TAACATAATCCTAAATTAT
1 TAACATAATCCTAAATTAT
*
11376315 TAACAACTTAATCCTAAAATAAT
1 TAAC-A--TAATCCT-AAATTAT
*
11376338 T-ACA-AA-CACAAAAAATTA-
1 TAACATAATC-C--TAAATTAT
11376356 TAACATAATCCTAAATTAT
1 TAACATAATCCTAAATTAT
11376375 TAACA
1 TAACA
11376380 AATTAATTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 22
0.66 0.05 0.29
Matches are distributed among these distances:
17 1 0.02
18 10 0.20
19 17 0.34
20 4 0.08
21 2 0.04
22 9 0.18
23 7 0.14
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.30
Consensus pattern (19 bp):
TAACATAATCCTAAATTAT
Found at i:11376326 original size:60 final size:60
Alignment explanation
Indices: 11376221--11376399 Score: 286
Period size: 60 Copynumber: 3.0 Consensus size: 60
11376211 ATACTAAACT
* * * *
11376221 AAACACAATAATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTATTAACAAATTAATTTTAAAATAATTAC
* **
11376281 AAACACAAAAATTTATAACATAATCCTAAATTATTAACAACTTAATCCTAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTATTAACAAATTAATTTTAAAATAATTAC
*
11376341 AAACACAAAAAATTATAACATAATCCTAAATTATTAACAAATTAATTTTAAAATAATTA
1 AAACACAAAAATTTATAACATAATCCTAAATTATTAACAAATTAATTTTAAAATAATTA
11376400 TAAAAAAGAA
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 108 1.00
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTATTAACAAATTAATTTTAAAATAATTAC
Found at i:11376475 original size:14 final size:15
Alignment explanation
Indices: 11376451--11376493 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
11376441 ATAGACACTA
11376451 AACATAAATAATTTAT
1 AACA-AAATAATTTAT
*
11376467 AA-AAAATAATTAAT
1 AACAAAATAATTTAT
*
11376481 AACAAAAAAATTT
1 AACAAAATAATTT
11376494 CACAACATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 12 0.52
15 9 0.39
16 2 0.09
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (15 bp):
AACAAAATAATTTAT
Found at i:11376579 original size:14 final size:14
Alignment explanation
Indices: 11376557--11376615 Score: 66
Period size: 14 Copynumber: 4.1 Consensus size: 14
11376547 AATAATTACC
11376557 TTTTTTTC-TTTCT
1 TTTTTTTCTTTTCT
11376570 TTTTTCTTCTTCTTCT
1 TTTTT-TTCTT-TTCT
*
11376586 TTTTTTTCTTCTCT
1 TTTTTTTCTTTTCT
* *
11376600 TTTCTCTCTTTTCT
1 TTTTTTTCTTTTCT
11376614 TT
1 TT
11376616 CTCTCTTTCG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
13 5 0.13
14 19 0.49
15 6 0.15
16 9 0.23
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTTTCTTTTCT
Found at i:11376597 original size:28 final size:29
Alignment explanation
Indices: 11376557--11376615 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 29
11376547 AATAATTACC
*
11376557 TTTTTTTCTTTCTTTTTTCT-TCTTCTTCT
1 TTTTTTTCTTTCTCTTTTCTCTCTT-TTCT
11376586 TTTTTTTC-TTCTCTTTTCTCTCTTTTCT
1 TTTTTTTCTTTCTCTTTTCTCTCTTTTCT
11376614 TT
1 TT
11376616 CTCTCTTTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 16 0.57
29 12 0.43
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (29 bp):
TTTTTTTCTTTCTCTTTTCTCTCTTTTCT
Found at i:11376609 original size:23 final size:21
Alignment explanation
Indices: 11376556--11376623 Score: 68
Period size: 23 Copynumber: 3.2 Consensus size: 21
11376546 TAATAATTAC
* *
11376556 CTTTTTTTC-TTTCTTT-TTT
1 CTTTTCTTCTTTTCTTTCTCT
*
11376575 CTTCTTCTTCTTTTTTTTCTTCT
1 CTT-TTCTTCTTTTCTTTC-TCT
11376598 CTTTTCTCTCTTTTCTTTCTCT
1 CTTTTCT-TCTTTTCTTTCTCT
11376620 CTTT
1 CTTT
11376624 CGGTGGGTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 3 0.08
20 5 0.12
21 6 0.15
22 11 0.28
23 15 0.38
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (21 bp):
CTTTTCTTCTTTTCTTTCTCT
Found at i:11376925 original size:24 final size:26
Alignment explanation
Indices: 11376893--11376945 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
11376883 ATAAAAATAA
11376893 AAAATAATAT-TTTATTTAA-ACAAAC
1 AAAATAATATATTT-TTTAATACAAAC
*
11376918 AAAA-AATATATTTTTTAATATAAAC
1 AAAATAATATATTTTTTAATACAAAC
11376943 AAA
1 AAA
11376946 GGAGTCGCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (26 bp):
AAAATAATATATTTTTTAATACAAAC
Found at i:11376942 original size:29 final size:27
Alignment explanation
Indices: 11376891--11376945 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
11376881 TAATAAAAAT
*
11376891 AAAAAATAATATTTTATTTAAACAAAC
1 AAAAAATAATATTTTATATAAACAAAC
*
11376918 AAAAAATATATTTTTTAATATAAACAAA
1 AAAAAATA-ATATTTT-ATATAAACAAA
11376946 GGAGTCGCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 8 0.33
28 6 0.25
29 10 0.42
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (27 bp):
AAAAAATAATATTTTATATAAACAAAC
Found at i:11379100 original size:24 final size:24
Alignment explanation
Indices: 11379073--11379119 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
11379063 TTAGACTAGA
*
11379073 TCTAATCCTAAGTTCTAAATTTAG
1 TCTAATCCTAAGCTCTAAATTTAG
*
11379097 TCTAATTCTAAGCTCTAAATTTA
1 TCTAATCCTAAGCTCTAAATTTA
11379120 AGTTAAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (24 bp):
TCTAATCCTAAGCTCTAAATTTAG
Found at i:11379221 original size:12 final size:12
Alignment explanation
Indices: 11379201--11379265 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
11379191 CTAAGTTTAA
11379201 TCTAATTCTAAG
1 TCTAATTCTAAG
*
11379213 TCTAGTTCTTAA-
1 TCTAATTC-TAAG
* *
11379225 ACTAGTTCTAAAG
1 TCTAATTCT-AAG
*
11379238 GCTAATTCTAAG
1 TCTAATTCTAAG
* *
11379250 ACCAATTCTAAG
1 TCTAATTCTAAG
11379262 TCTA
1 TCTA
11379266 TATGATAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
11 1 0.02
12 31 0.74
13 10 0.24
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (12 bp):
TCTAATTCTAAG
Found at i:11382932 original size:16 final size:16
Alignment explanation
Indices: 11382911--11382944 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
11382901 ACCACAGAAC
11382911 CTTAATTAGAGTAACA
1 CTTAATTAGAGTAACA
11382927 CTTAATTAGAGTAACA
1 CTTAATTAGAGTAACA
11382943 CT
1 CT
11382945 CTTCCTTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (16 bp):
CTTAATTAGAGTAACA
Found at i:11384355 original size:20 final size:20
Alignment explanation
Indices: 11384330--11384394 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
11384320 TACATACATG
*
11384330 CCCCTGTTTGGACTTTGGTA
1 CCCCTGTTTGAACTTTGGTA
** *
11384350 CCCCTGAATGAACATATGTGT-
1 CCCCTGTTTGAAC-TTTG-GTA
*
11384371 -CCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGAACTTTGGTA
11384390 CCCCT
1 CCCCT
11384395 AAATGCATAT
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
18 2 0.06
19 3 0.09
20 23 0.70
21 3 0.09
22 2 0.06
ACGTcount: A:0.15, C:0.28, G:0.20, T:0.37
Consensus pattern (20 bp):
CCCCTGTTTGAACTTTGGTA
Found at i:11386010 original size:24 final size:24
Alignment explanation
Indices: 11385978--11386027 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
11385968 TGAAATGGAA
11385978 GAAAGTGAGCAAACTTCATCAATC
1 GAAAGTGAGCAAACTTCATCAATC
11386002 GAAAGTGAGCAAACTTCATCAATC
1 GAAAGTGAGCAAACTTCATCAATC
11386026 GA
1 GA
11386028 TCCATGATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (24 bp):
GAAAGTGAGCAAACTTCATCAATC
Found at i:11388624 original size:26 final size:25
Alignment explanation
Indices: 11388588--11388644 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 25
11388578 TTAACCTATG
11388588 CACAACCATTTCCACACTCACATAT
1 CACAACCATTTCCACACTCACATAT
*
11388613 CCACAACCATTTCCACACTGACATAT
1 -CACAACCATTTCCACACTCACATAT
11388639 CACAAC
1 CACAAC
11388645 AAAACCTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 6 0.20
26 24 0.80
ACGTcount: A:0.37, C:0.40, G:0.02, T:0.21
Consensus pattern (25 bp):
CACAACCATTTCCACACTCACATAT
Found at i:11388894 original size:24 final size:25
Alignment explanation
Indices: 11388855--11388920 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
11388845 GTACATTTTT
11388855 CGTCAATTCATCCTTTGCA-TATAC
1 CGTCAATTCATCCTTTGCATTATAC
* * * *
11388879 TGTCAATTCCTTCTTTGCATTTTAC
1 CGTCAATTCATCCTTTGCATTATAC
11388904 CGTCAATTCATCCTTTG
1 CGTCAATTCATCCTTTG
11388921 ACACAGAATG
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 16 0.47
25 18 0.53
ACGTcount: A:0.20, C:0.27, G:0.09, T:0.44
Consensus pattern (25 bp):
CGTCAATTCATCCTTTGCATTATAC
Found at i:11393507 original size:21 final size:20
Alignment explanation
Indices: 11393483--11393522 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
11393473 CATGTATTTT
11393483 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
11393504 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
11393523 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:11393530 original size:20 final size:21
Alignment explanation
Indices: 11393488--11393530 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
11393478 ATTTTAATGA
*
11393488 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
11393509 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
11393529 TT
1 TT
11393531 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:11394866 original size:6 final size:6
Alignment explanation
Indices: 11394855--11394886 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
11394845 CACCATAAGG
*
11394855 GTAACA GTAACA GTAACA GTAACA ATAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GT
11394887 CAAGTACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:11402851 original size:40 final size:39
Alignment explanation
Indices: 11402686--11402869 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
11402676 AAATTGAATG
* * *
11402686 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
11402726 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
11402766 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
11402806 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
11402845 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
11402870 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:11402894 original size:80 final size:81
Alignment explanation
Indices: 11402726--11402914 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
11402716 GCTGGAAATT
* * * *
11402726 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
11402791 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
11402807 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
11402870 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
11402886 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
11402915 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:11405021 original size:34 final size:34
Alignment explanation
Indices: 11404977--11405044 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
11404967 GCATAGTTGA
* *
11404977 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTA-CAGTG
*
11405012 ACAGT-TTGGGCCTTAGCCCATCTCAGTACAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
11405045 TCAAAAATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
Found at i:11411406 original size:40 final size:40
Alignment explanation
Indices: 11411351--11411558 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
11411341 TGAATGATAC
* * *
11411351 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
11411391 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
11411431 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
11411471 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
11411511 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
11411551 CC-GGCTAA
1 CCGGGCTAA
11411559 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 147 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:11419577 original size:40 final size:40
Alignment explanation
Indices: 11419517--11419723 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
11419507 TGAATGATAC
* * *
11419517 CCGGGCTAAG-TCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
11419556 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
11419596 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
11419636 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
11419676 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
11419716 CC-GGCTAA
1 CCGGGCTAA
11419724 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 15 0.10
40 136 0.89
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:11423205 original size:164 final size:163
Alignment explanation
Indices: 11423015--11423407 Score: 438
Period size: 164 Copynumber: 2.4 Consensus size: 163
11423005 GTTAACACTA
* *
11423015 TATTAAAAAAAAAAGACCACAAAGAACCTAGTTAACACTCCAAATTTAATCTTCTCTTTTCAATT
1 TATT-AAAAAAAAA-ACCGCAAAGAACCTAGCTAACACTCCAAATTTAATCTTCTCTTTTCAATT
* * * * * * *
11423080 TCTACT-GAGTCCTTATCAAAAGTCTCTCGACTTCTATGTCATCGACA-ACAAGATCAACAAAAC
64 CCAACTAG-GTCCTTATCAAAAATCTCTCAACATCTATATAATCGACAGA-AAGATCAACAAAAC
* ** * ** *
11423143 AAACCATTGTTGATAAGCACCTCCAGACAAAGGACCT
127 AAACCATTATCAATAAGCACCTCAAGACAAAACACAT
* * * *
11423180 TATTAAAAAAAAACACCGTAAAGAACTTAGCTAACACTCTAAATTTAATCTTCTCTCTTCAATTC
1 TATTAAAAAAAAA-ACCGCAAAGAACCTAGCTAACACTCCAAATTTAATCTTCTCTTTTCAATTC
* * ** *
11423245 CAACTAGGTCCTTATTAAAAATCTTTCAACATCTATATAATCGGTAGAAAGATCAATAAAACAAA
65 CAACTAGGTCCTTATCAAAAATCTCTCAACATCTATATAATCGACAGAAAGATCAACAAAACAAA
11423310 CCATTATCAATAAGCACCTCAAGACAAAACACAT
130 CCATTATCAATAAGCACCTCAAGACAAAACACAT
** *
11423344 TATT----AAAAAAGGGCAAAGAACCTAACTAACACTCCAAATTTAATCTTCTCTTTTCAAATTC
1 TATTAAAAAAAAAACCGCAAAGAACCTAGCTAACACTCCAAATTTAATCTTCTCTTTTC-AATTC
11423405 CAA
65 CAA
11423408 TGATCCTAAA
Statistics
Matches: 192, Mismatches: 33, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
159 39 0.20
160 13 0.07
164 134 0.70
165 6 0.03
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (163 bp):
TATTAAAAAAAAAACCGCAAAGAACCTAGCTAACACTCCAAATTTAATCTTCTCTTTTCAATTCC
AACTAGGTCCTTATCAAAAATCTCTCAACATCTATATAATCGACAGAAAGATCAACAAAACAAAC
CATTATCAATAAGCACCTCAAGACAAAACACAT
Found at i:11429479 original size:35 final size:35
Alignment explanation
Indices: 11429394--11429464 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
11429384 CACGTCGAAG
* *
11429394 CGTTCAAACCATTTTATGTTGTTTATCTAGAAAAA
1 CGTTCAAATCATTTTATGTTGTTGATCTAGAAAAA
11429429 CGTTCAAATCATTTTATGTTGTTGATCTAGAAAAA
1 CGTTCAAATCATTTTATGTTGTTGATCTAGAAAAA
11429464 C
1 C
11429465 TTACTTAGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (35 bp):
CGTTCAAATCATTTTATGTTGTTGATCTAGAAAAA
Found at i:11430344 original size:28 final size:27
Alignment explanation
Indices: 11430294--11430405 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
11430284 AGAATGACTG
* *
11430294 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
11430320 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
* *
11430348 CCAGAATAGAT-ATATGTGGCAAAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
11430375 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
11430402 CCAG
1 CCAG
11430406 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 50 0.67
28 18 0.24
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:11430359 original size:54 final size:54
Alignment explanation
Indices: 11430294--11430405 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
11430284 AGAATGACTG
* *
11430294 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGAT-CAGATAATTGTGGCAGAGCCA
* * *
11430348 CCAGAATAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAAAGCCACCAGATCAGATAATTGTGGCAGAGCCA
11430402 CCAG
1 CCAG
11430406 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAAAGCCACCAGATCAGATAATTGTGGCAGAGCCA
Found at i:11441631 original size:43 final size:42
Alignment explanation
Indices: 11441578--11441678 Score: 107
Period size: 43 Copynumber: 2.4 Consensus size: 42
11441568 CCACTATCCT
* *
11441578 AGACAAGGTCTTACACGAAAATGATTAATGAT-A-CCAATGTCCC
1 AGACATGGTCTTACAC-AAAAT-ATCAAT-ATAAGCCAATGTCCC
* * *
11441621 AGATATGGTCTTACACATAATCTCAATATAATGCCAATGTCCC
1 AGACATGGTCTTACACAAAATATCAATATAA-GCCAATGTCCC
11441664 AGACATGGTCTTACA
1 AGACATGGTCTTACA
11441679 TGTAATCACA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
40 2 0.04
41 5 0.10
42 4 0.08
43 38 0.78
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (42 bp):
AGACATGGTCTTACACAAAATATCAATATAAGCCAATGTCCC
Found at i:11446818 original size:50 final size:50
Alignment explanation
Indices: 11446754--11447091 Score: 327
Period size: 50 Copynumber: 6.7 Consensus size: 50
11446744 TAAGATAGTT
* *
11446754 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * *
11446804 TTTGGTCACATGTGTAGTACAAAGTGCAGGTTACTATGCGTACCCGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * *
11446854 CTTCGATCACATGTGTAGTACAAAGTGCATGCTACTACGTGCATCAGATGG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
** * * * * * *
11446905 TTAGGTCATGTGTGTAGTACAAAGTGGAGGGTACTACATGTACCAAATTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * ** *
11446955 TTAGATCGCATGTGTATTACTAAGTGCAGGCTACTATGCATACCCA-ATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTG
* * * *
11447005 CTTTGATGACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
11447056 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
11447092 TGCATACCAG
Statistics
Matches: 225, Mismatches: 59, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
50 145 0.64
51 80 0.36
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:11447031 original size:151 final size:151
Alignment explanation
Indices: 11446754--11447091 Score: 451
Period size: 151 Copynumber: 2.2 Consensus size: 151
11446744 TAAGATAGTT
* * * * * *
11446754 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATTGTTTGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTATTAGATCACATGTGT
* * * *
11446819 AGTACAAAGTGCAGGTTACTATGCGTACCCGATAGCTTCGATCACATGTGTAGTACAAAGTGCAT
66 AGTACAAAGTGCAGGCTACTATGCATACCCAATAGCTTCGATCACATGTGTAGTACAAAGTGCAG
*
11446884 GCTACTACGTGCATCAGATGG
131 GCTACTACGTGCACCAGATGG
* * * * *
11446905 TTAGGTCATGTGTGTAGTACAAAGTGGAGGGTACTACATGTACCAAATTATTAGATCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTATTAGATCACATGTGT
* * * * * *
11446970 ATTACTAAGTGCAGGCTACTATGCATACCCAATAGCTTTGATGACGTGTGTAGTACTAAGTGCAG
66 AGTACAAAGTGCAGGCTACTATGCATACCCAATAGCTTCGATCACATGTGTAGTACAAAGTGCAG
* *
11447035 GCTACTACGTGTACCAGATTG
131 GCTACTACGTGCACCAGATGG
*
11447056 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
11447092 TGCATACCAG
Statistics
Matches: 158, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
151 158 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATTATTAGATCACATGTGT
AGTACAAAGTGCAGGCTACTATGCATACCCAATAGCTTCGATCACATGTGTAGTACAAAGTGCAG
GCTACTACGTGCACCAGATGG
Found at i:11447092 original size:101 final size:99
Alignment explanation
Indices: 11446754--11447102 Score: 353
Period size: 101 Copynumber: 3.5 Consensus size: 99
11446744 TAAGATAGTT
* * * * ** *
11446754 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATTGTTTGGTCACATGTGT
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA-TGTTTGGTCACGTGTGT
* * * * *
11446819 AGTACAAAGTGCAGGTTACTATGCGTACCCGATAG
65 AGTACAAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
11446854 CTTCGATCACATGTGTAGTACAAAGTGCATGCTACTACGTGCAT--CAGATGGTTAGGTCATGTG
1 -TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTA--TGCATACCAGAT-GTTTGGTCACGTG
* * * * *
11446917 TGTAGTACAAAGTGGAGGGTACTACATGTACCAAATTA
62 TGTAGTACAAAGTGCAGGCTACTACGTGTACCAGATTG
* * * *
11446955 TTAGATCGCATGTGTATTACTAAGTGCAGGCTACTATGCATACCCA-ATAGCTTTGATGACGTGT
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCATA-CCAGAT-G-TTTGGTCACGTGT
*
11447019 GTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
63 GTAGTACAAAGTGCAGGCTACTACGTGTACCAGATTG
*
11447056 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
11447103 GAGCTTCGGT
Statistics
Matches: 200, Mismatches: 40, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
98 5 0.03
100 38 0.19
101 155 0.77
103 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.30
Consensus pattern (99 bp):
TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATGTTTGGTCACGTGTGTA
GTACAAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:11447137 original size:101 final size:101
Alignment explanation
Indices: 11446936--11447137 Score: 235
Period size: 101 Copynumber: 2.0 Consensus size: 101
11446926 AAGTGGAGGG
* *
11446936 TACTACATGTACCAAATTATTAGATCGCATGTGTATTACTAAGTGCAGGCTACTATGCATACCCA
1 TACTACATGTACCAAATTATTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCA
* * ** * * *
11447001 ATAGCTTTGATGACGTGTGTAGTACTAAGTGCAGGC
66 AGAGCTTCGATGACAAGGGTAGTAATAAGTACAGGC
* * * *
11447037 TACTACGTGTACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATA-CCA
1 TACTACATGTACCAAATTATTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCA
* * * *
11447101 GAGAGCTTCGGTTACAAGGGTGGTAATATGTACAGGC
66 -AGAGCTTCGATGACAAGGGTAGTAATAAGTACAGGC
11447138 CACCAGGTAT
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
100 3 0.04
101 80 0.96
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (101 bp):
TACTACATGTACCAAATTATTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCA
AGAGCTTCGATGACAAGGGTAGTAATAAGTACAGGC
Found at i:11454481 original size:42 final size:42
Alignment explanation
Indices: 11454434--11454548 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 42
11454424 TATTGAGATA
* * *
11454434 ACGTGTAAGACGATATCTAGGATATGACATCGATATGAGACGT
1 ACGTGTAAGACCATATCTGGGATATGACATCGATACGAGA-GT
* * * *
11454477 -CGTGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATT
1 ACGTGTAAGACCATATCTGGGATA-TGACATCGATACGAGAGT
*
11454519 ACATGTAAGACCATATCTGGGATATGACAT
1 ACGTGTAAGACCATATCTGGGATATGACAT
11454549 TGGTACGTTA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
42 25 0.42
43 34 0.58
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (42 bp):
ACGTGTAAGACCATATCTGGGATATGACATCGATACGAGAGT
Found at i:11456056 original size:38 final size:38
Alignment explanation
Indices: 11456012--11456091 Score: 160
Period size: 38 Copynumber: 2.1 Consensus size: 38
11456002 TGTTATTGTT
11456012 GTTTTACATGAAATCTATCTGGCTATGATCATATTGAA
1 GTTTTACATGAAATCTATCTGGCTATGATCATATTGAA
11456050 GTTTTACATGAAATCTATCTGGCTATGATCATATTGAA
1 GTTTTACATGAAATCTATCTGGCTATGATCATATTGAA
11456088 GTTT
1 GTTT
11456092 ATGTTAATGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.41
Consensus pattern (38 bp):
GTTTTACATGAAATCTATCTGGCTATGATCATATTGAA
Found at i:11456706 original size:153 final size:152
Alignment explanation
Indices: 11456425--11456707 Score: 329
Period size: 153 Copynumber: 1.8 Consensus size: 152
11456415 GTTGTGAGAA
* * * * * *
11456425 CACATGTGTTGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTGGTACTAAGTGCAGGCCACTACGTG-TTAAAACGGTTTTAGGTCACGTATGTAGTA
* * * * * * * *
11456490 CTAAGTGCAGGTTACTACGTGTACCAGATAGTTGGGTCGCATGTGTAGTACTAAGTGTAGGCCAC
65 CTAAGTGCAGGCTACTACGTGCACCAGATAGTTCGGTCACAAGGGTAGTAATAAGTGCAGGCCAC
11456555 TGTGCGTACCCAATAGCTTCGAT
130 TGTGCGTACCCAATAGCTTCGAT
11456578 CACATGTGTGGTACTAAGTGCAGGCCACTACGTG-TAAGAGACGGTTTT-GGTCACAG-ATGTAG
1 CACATGTGTGGTACTAAGTGCAGGCCACTACGTGTTAA-A-ACGGTTTTAGGTCAC-GTATGTAG
* * * * *
11456640 TACTAAGTGCAGGCTACTATGTGCACTAGATAGCTTCGGTTACAAGGGTGGTAATATGTGCAGGC
63 TACTAAGTGCAGGCTACTACGTGCACCAGATAG-TTCGGTCACAAGGGTAGTAATAAGTGCAGGC
11456705 CAC
127 CAC
11456708 CGTGTATCTA
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
151 3 0.03
152 41 0.38
153 63 0.59
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (152 bp):
CACATGTGTGGTACTAAGTGCAGGCCACTACGTGTTAAAACGGTTTTAGGTCACGTATGTAGTAC
TAAGTGCAGGCTACTACGTGCACCAGATAGTTCGGTCACAAGGGTAGTAATAAGTGCAGGCCACT
GTGCGTACCCAATAGCTTCGAT
Found at i:11463517 original size:60 final size:59
Alignment explanation
Indices: 11463404--11463524 Score: 147
Period size: 60 Copynumber: 2.0 Consensus size: 59
11463394 AACTGGGTCT
* * *
11463404 TAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTATAGTATCAGAGTATATTGGGCC
1 TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTAAAGTA-CAGAGTATATTGGGCC
**
11463464 TAGCCCATATCGGTATCAATCTGGGCCATAGCCCTATTACAAGT-CA-AGATATATTGGGCC
1 TAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTA-AAGTACAGAG-TATATTGGGCC
11463524 T
1 T
11463525 TGGCTATATT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
59 2 0.04
60 45 0.85
61 3 0.06
62 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (59 bp):
TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTAAAGTACAGAGTATATTGGGCC
Found at i:11466575 original size:29 final size:29
Alignment explanation
Indices: 11466542--11466673 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
11466532 CCTCCGAACT
** * * *
11466542 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
11466571 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
11466600 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
11466629 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
11466658 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
11466674 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:11474592 original size:28 final size:29
Alignment explanation
Indices: 11474522--11474632 Score: 188
Period size: 29 Copynumber: 3.9 Consensus size: 29
11474512 CAGTGCCGAT
** *
11474522 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
11474551 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
11474580 -TTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCATATA
11474608 TTTCCAGCACGCACACTTAGTGCCA
1 TTTCCAGCACGCACACTTAGTGCCA
11474633 ATCTCGTCAC
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
28 28 0.36
29 50 0.64
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCATATA
Found at i:11474601 original size:57 final size:57
Alignment explanation
Indices: 11474523--11474632 Score: 193
Period size: 57 Copynumber: 1.9 Consensus size: 57
11474513 AGTGCCGATT
**
11474523 TTCCAGCTTGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATA
1 TTCCAGCACGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATA
*
11474580 TTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 TTCCAGCACGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCA
11474633 ATCTCGTCAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (57 bp):
TTCCAGCACGCACACTTAGTGCCAAATATTTCCAGCACGCACACTTAGTGCCATATA
Found at i:11477659 original size:29 final size:29
Alignment explanation
Indices: 11477626--11477757 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
11477616 CCTCCGAACT
** * * *
11477626 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
11477655 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
11477684 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
11477713 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
11477742 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
11477758 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:11485640 original size:29 final size:29
Alignment explanation
Indices: 11485607--11485738 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
11485597 CCTCCGAACT
** * * *
11485607 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
11485636 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
11485665 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
11485694 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
11485723 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
11485739 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:11487888 original size:584 final size:583
Alignment explanation
Indices: 11486781--11487950 Score: 2331
Period size: 584 Copynumber: 2.0 Consensus size: 583
11486771 ACCTTGTTTT
11486781 GAGCTTAAAGTTGACCGAAATCTCCCCTCCCCCTTTCTTTCTTCAATTCGGCTAAGAGAGAACCA
1 GAGCTTAAAGTTGACCGAAATCTCCCCTCCCCCTTTCTTTCTTCAATTCGGCTAAGAGAGAACCA
11486846 AAGGAAATGAAGCTCTCTTTTTTTTTCTTTCTTTGCTCCATTCACGGCAACTTGGGGGGGGAGGC
66 AAGGAAATGAAGCTCTCTTTTTTTTTCTTTCTTTGCTCCATTCACGGCAACTTGGGGGGGGAGGC
11486911 ATCCACACACTTTTTTTTTCTTATTTTATTCCCCTTTCTTTTAAATTCCTTTCTTTATTTTAGTT
131 ATCCACACACTTTTTTTTTCTTATTTTATTCCCCTTTCTTTTAAATTCCTTTCTTTATTTTAGTT
11486976 TGTCTCCCATAATCCAATTTCTTATTATAATATCTAAGGCAAACAAATATATTGCCCATCATCAA
196 TGTCTCCCATAATCCAATTTCTTATTATAATATCTAAGGCAAACAAATATATTGCCCATCATCAA
11487041 TCTAACTTGGCCGGCCACCATAAGGAAAATTTGGCAATTTGACATGCAAGTCCAAGCATTTTCTA
261 TCTAACTTGGCCGGCCACCATAAGGAAAATTTGGCAATTTGACATGCAAGTCCAAGCATTTTCTA
11487106 ATATGTATCAATAGGCCACTTTAACATTAGCCTAGCACATTTCTCAATTTCCTCACATAAGTCCT
326 ATATGTATCAATAGGCCACTTTAACATTAGCCTAGCACATTTCTCAATTTCCTCACATAAGTCCT
11487171 TTCTAATAAATTTCACCTACGAATGACGAAATTAAGGCACGAAATTTTCACATATGTACGTTCAT
391 TTCTAATAAATTTCACCTACGAATGACGAAATTAAGGCACGAAATTTTCACATATGTACGTTCAT
11487236 GCACAATAAACATAGAAAATAATAATTAATTATTCTTGTGTCTCGGTTTTGTGGTCCCGAAACCA
456 GCACAATAAACATAGAAAATAATAATTAATTATTCTTGTGTCTCGGTTTTGTGGTCCCGAAACCA
11487301 CATCCCGACTATGGTCAATTTTGGGATGTCACATTATCCACCGCTTCATCATGCTGCTAAGAG
521 CATCCCGACTATGGTCAATTTTGGGATGTCACATTATCCACCGCTTCATCATGCTGCTAAGAG
11487364 GAGCTTAAAGTTGACCGAAATCTCCCCTCCCCCTTTCTTTCTTCAATTCGGCTAAGAGAGAACCA
1 GAGCTTAAAGTTGACCGAAATCTCCCCTCCCCCTTTCTTTCTTCAATTCGGCTAAGAGAGAACCA
11487429 AAGGAAATGAAGCTCTCTTTTTTTTTCTTTCTTTGCTCCATTCACGGCAACTTGGGGGGGGGAGG
66 AAGGAAATGAAGCTCTCTTTTTTTTTCTTTCTTTGCTCCATTCACGGCAACTT-GGGGGGGGAGG
11487494 CATCCACACACTTTTTTTTTCTTATTTTATTCCCCTTTCTTTTAAATTCCTTTCTTTATTTTAGT
130 CATCCACACACTTTTTTTTTCTTATTTTATTCCCCTTTCTTTTAAATTCCTTTCTTTATTTTAGT
11487559 TTGTCTCCCATAATCCAATTTCTTATTATAATATCTAAGGCAAACAAATATATTGCCCATCATCA
195 TTGTCTCCCATAATCCAATTTCTTATTATAATATCTAAGGCAAACAAATATATTGCCCATCATCA
11487624 ATCTAACTTGGCCGGCCACCATAAGGAAAATTTGGCAATTTGACATGCAAGTCCAAGCATTTTCT
260 ATCTAACTTGGCCGGCCACCATAAGGAAAATTTGGCAATTTGACATGCAAGTCCAAGCATTTTCT
11487689 AATATGTATCAATAGGCCACTTTAACATTAGCCTAGCACATTTCTCAATTTCCTCACATAAGTCC
325 AATATGTATCAATAGGCCACTTTAACATTAGCCTAGCACATTTCTCAATTTCCTCACATAAGTCC
11487754 TTTCTAATAAATTTCACCTACGAATGACGAAATTAAGGCACGAAATTTTCACATATGTACGTTCA
390 TTTCTAATAAATTTCACCTACGAATGACGAAATTAAGGCACGAAATTTTCACATATGTACGTTCA
11487819 TGCACAATAAACATAGAAAATAATAATTAATTATTCTTGTGTCTCGGTTTTGTGGTCCCGAAACC
455 TGCACAATAAACATAGAAAATAATAATTAATTATTCTTGTGTCTCGGTTTTGTGGTCCCGAAACC
11487884 ACATCCCGACTATGGTCAATTTTGGGATGTCACATTATCCACCGCTTCATCATGCTGCTAAGAG
520 ACATCCCGACTATGGTCAATTTTGGGATGTCACATTATCCACCGCTTCATCATGCTGCTAAGAG
11487948 GAG
1 GAG
11487951 TTTCGGTCAA
Statistics
Matches: 586, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
583 118 0.20
584 468 0.80
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (583 bp):
GAGCTTAAAGTTGACCGAAATCTCCCCTCCCCCTTTCTTTCTTCAATTCGGCTAAGAGAGAACCA
AAGGAAATGAAGCTCTCTTTTTTTTTCTTTCTTTGCTCCATTCACGGCAACTTGGGGGGGGAGGC
ATCCACACACTTTTTTTTTCTTATTTTATTCCCCTTTCTTTTAAATTCCTTTCTTTATTTTAGTT
TGTCTCCCATAATCCAATTTCTTATTATAATATCTAAGGCAAACAAATATATTGCCCATCATCAA
TCTAACTTGGCCGGCCACCATAAGGAAAATTTGGCAATTTGACATGCAAGTCCAAGCATTTTCTA
ATATGTATCAATAGGCCACTTTAACATTAGCCTAGCACATTTCTCAATTTCCTCACATAAGTCCT
TTCTAATAAATTTCACCTACGAATGACGAAATTAAGGCACGAAATTTTCACATATGTACGTTCAT
GCACAATAAACATAGAAAATAATAATTAATTATTCTTGTGTCTCGGTTTTGTGGTCCCGAAACCA
CATCCCGACTATGGTCAATTTTGGGATGTCACATTATCCACCGCTTCATCATGCTGCTAAGAG
Found at i:11493902 original size:10 final size:10
Alignment explanation
Indices: 11493887--11493922 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
11493877 ATCATATTCT
*
11493887 ACCAAACCAA
1 ACCAAATCAA
11493897 ACCAAATCAA
1 ACCAAATCAA
*
11493907 ACCAAGTCAA
1 ACCAAATCAA
11493917 ACCAAA
1 ACCAAA
11493923 GTCACAACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.58, C:0.33, G:0.03, T:0.06
Consensus pattern (10 bp):
ACCAAATCAA
Found at i:11496309 original size:128 final size:127
Alignment explanation
Indices: 11496177--11496596 Score: 358
Period size: 128 Copynumber: 3.3 Consensus size: 127
11496167 CAATACTGCT
* *
11496177 CGAGGCTCCTAG-GCATCCGAGGCACCAAGGTGCCGGA-GGTGCCCGAAGCTCCTGCACATCCAA
1 CGAGGCTCCT-GCACATCC-AGGCACCAAGGTGCC-GATGGTGCCCGAGGCTCCTGCACATCCAA
* * *
11496240 GCACCAAGGTACTGATGGTACCCGAGGCTCTCACACGACCAAGGGCCTAGGTTATC-GATGGTGC
63 GCACCAAGGT-CTGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGTTATCTGATGGTGC
11496304 C
127 C
* * * * * *
11496305 CGAGGCT-CTCGCACAACCAAAGG--TCTAGGTTGCCGATGGTGTCCGTGGCTCCTGGACATCCA
1 CGAGGCTCCT-GCACATCC--AGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCTGCACATCCA
* * * * * * * *
11496367 AGCACTAAGGTGTCGATAGTGTTTGAGGCTCCCGCATGACTAAGGGCCTA-GTT-TGCTGATGGT
62 AGCACCAAGGTCT-GATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGTTAT-CTGATGGT
*
11496430 GTC
125 GCC
* * * * *
11496433 CGAGGCTCCTGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCGAGGC
1 CGAGGCTCCTGCACATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCTGCACATCC-AAGC
* * *
11496498 ACCAAGTTGCCGATGGTGCTCGAGGCTCTCGCACAACCAAGGGCCTAGGTTA-CTGATGGTGCC
65 ACCAAGGT-CTGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGTTATCTGATGGTGCC
* *
11496561 CGATGCTCCGGCACGA-CCAAGGGC-CCAAGGTGCCGA
1 CGAGGCTCCTGCAC-ATCC-A-GGCACCAAGGTGCCGA
11496597 AGGATCTTGT
Statistics
Matches: 227, Mismatches: 48, Indels: 33
0.74 0.16 0.11
Matches are distributed among these distances:
126 3 0.01
127 39 0.17
128 161 0.71
129 22 0.10
130 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (127 bp):
CGAGGCTCCTGCACATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCTGCACATCCAAGCA
CCAAGGTCTGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGTTATCTGATGGTGCC
Found at i:11496383 original size:85 final size:85
Alignment explanation
Indices: 11496294--11496538 Score: 244
Period size: 85 Copynumber: 2.9 Consensus size: 85
11496284 GCCTAGGTTA
* * * *
11496294 TCGATGGTGCCCGAGGCTCTCGCACAACCAAAGGTCTAGGTTGCCGATGGTGTCCGTGGCTCCTG
1 TCGATGGTGCTCGAGGCTCCCGCACAACCAAAGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCTG
* *
11496359 GACATCCAAGCACTAAGGTG
66 CACATCCAAGCACCAAGGTG
* * * ** * * * *
11496379 TCGATAGTGTTTGAGGCTCCCGCATGACTAAGGGCCTAGTTTGCTGATGGTGTCCGAGGCTCCTG
1 TCGATGGTGCTCGAGGCTCCCGCACAACCAAAGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCTG
11496444 CACATCCAAGCACCAAGGTG
66 CACATCCAAGCACCAAGGTG
* * * * * *
11496464 CCGATGCTGCTCGAGGCTCCCGCACATCC-GAGGCACCAAGTTGCCGATGGTG-CTCGAGGCT-C
1 TCGATGGTGCTCGAGGCTCCCGCACAACCAAAGGC-CTAGGTTGCCGATGGTGTC-CGAGGCTCC
*
11496526 TCGCACAACCAAG
64 T-GCACATCCAAG
11496539 GGCCTAGGTT
Statistics
Matches: 126, Mismatches: 31, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
84 6 0.05
85 120 0.95
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (85 bp):
TCGATGGTGCTCGAGGCTCCCGCACAACCAAAGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCTG
CACATCCAAGCACCAAGGTG
Found at i:11496518 original size:43 final size:43
Alignment explanation
Indices: 11496056--11496596 Score: 258
Period size: 43 Copynumber: 12.7 Consensus size: 43
11496046 TTTTCTTTAG
* * *
11496056 CCCGCACATCTAAGGCACCAAGGTGCC-ACTGCTGCTCGAGGCA
1 CCCGCACATCCAAGGCACCAAGGTGCCGA-TGGTGCTCGAGGCT
* * ** *
11496099 CCCGCACATCCAACG-TCTTAGGTTGCCTATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGGCACCAAGG-TGCCGATGGTGCT-CGAGGCT
* * **
11496142 CCCACACATCCAA-GCACCAAGGTGCCAATACTGCTCGAGGCT
1 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCTCGAGGCT
* * * * *
11496184 CCTAG-GCATCCGAGGCACCAAGGTGCCGGA-GGTGCCCGAAGCT
1 CC-CGCACATCCAAGGCACCAAGGTGCC-GATGGTGCTCGAGGCT
* * * * *
11496227 CCTGCACATCCAA-GCACCAAGGTACTGATGGTACCCGAGGCT
1 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCTCGAGGCT
* * * * ** *
11496269 CTCACACGA-CCAAGG-GCCTAGGTTATCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCTCGAGGCT
* * * * *
11496312 CTCGCACAACCAAAGG--TCTAGGTTGCCGATGGTG-TCCGTGGCT
1 CCCGCACATCC-AAGGCACCAAGG-TGCCGATGGTGCT-CGAGGCT
* * * * * * *
11496355 CCTGGACATCCAA-GCACTAAGGTGTCGATAGTGTTTGAGGCT
1 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCTCGAGGCT
* * * * * *
11496397 CCCGCATGA-CTAAGG-GCCTAGTTTGCTGATGGTG-TCCGAGGCT
1 CCCGCA-CATCCAAGGCACCAAG-GTGCCGATGGTGCT-CGAGGCT
* *
11496440 CCTGCACATCCAA-GCACCAAGGTGCCGATGCTGCTCGAGGCT
1 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCTCGAGGCT
* *
11496482 CCCGCACATCCGAGGCACCAAGTTGCCGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCTCGAGGCT
* * * * * * * *
11496525 CTCGCACAACCAAGG-GCCTAGGTTACTGATGGTGCCCGATGCT
1 CCCGCACATCCAAGGCACCAAGG-TGCCGATGGTGCTCGAGGCT
*
11496568 CCGGCACGA-CCAAGGGC-CCAAGGTGCCGA
1 CCCGCAC-ATCCAA-GGCACCAAGGTGCCGA
11496597 AGGATCTTGT
Statistics
Matches: 373, Mismatches: 94, Indels: 62
0.71 0.18 0.12
Matches are distributed among these distances:
41 3 0.01
42 126 0.34
43 230 0.62
44 14 0.04
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.18
Consensus pattern (43 bp):
CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCTCGAGGCT
Found at i:11496756 original size:24 final size:24
Alignment explanation
Indices: 11496694--11496758 Score: 112
Period size: 24 Copynumber: 2.7 Consensus size: 24
11496684 GGAATGCTTG
* *
11496694 CCGGAGCACCGCCGAGATGGCTCG
1 CCGGAGCACCGCCGGGATGGCTCA
11496718 CCGGAGCACCGCCGGGATGGCTCA
1 CCGGAGCACCGCCGGGATGGCTCA
11496742 CCGGAGCACCGCCGGGA
1 CCGGAGCACCGCCGGGA
11496759 ACCTAATCCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.17, C:0.38, G:0.38, T:0.06
Consensus pattern (24 bp):
CCGGAGCACCGCCGGGATGGCTCA
Found at i:11500428 original size:80 final size:80
Alignment explanation
Indices: 11500344--11500492 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
11500334 TATGGTAACC
* * * *
11500344 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
11500408 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
11500424 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
11500489 CCGG
66 CCGG
11500493 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:11500434 original size:40 final size:38
Alignment explanation
Indices: 11500385--11500492 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
11500375 ATCACGATTT
*
11500385 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
11500425 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
11500465 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
11500493 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:11508509 original size:80 final size:80
Alignment explanation
Indices: 11508425--11508573 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
11508415 TATGGTAACC
* * * *
11508425 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
11508489 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
11508505 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
11508570 CCGG
66 CCGG
11508574 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:11508515 original size:40 final size:38
Alignment explanation
Indices: 11508466--11508573 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
11508456 ATCACGATTT
*
11508466 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
11508506 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
11508546 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
11508574 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:11514903 original size:13 final size:13
Alignment explanation
Indices: 11514881--11514913 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
11514871 AAGGGTTTTT
11514881 TTAT-TAAACTAA
1 TTATCTAAACTAA
11514893 TTATCTAAACTAA
1 TTATCTAAACTAA
*
11514906 TTAACTAA
1 TTATCTAA
11514914 TTTGATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:11517782 original size:6 final size:6
Alignment explanation
Indices: 11517774--11517811 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
11517764 AAATTGAAAT
11517774 AAAAGTA AAAAGA AAAAG- AAAAGA AAAAG- AAAAGA AAA
1 AAAAG-A AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAA
11517812 TAGTAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
5 10 0.34
6 14 0.48
7 5 0.17
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.03
Consensus pattern (6 bp):
AAAAGA
Found at i:11517795 original size:11 final size:11
Alignment explanation
Indices: 11517781--11517811 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
11517771 AATAAAAGTA
11517781 AAAAGAAAAAG
1 AAAAGAAAAAG
11517792 AAAAGAAAAAG
1 AAAAGAAAAAG
11517803 AAAAGAAAA
1 AAAAGAAAA
11517812 TAGTAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:11517846 original size:6 final size:6
Alignment explanation
Indices: 11517770--11517848 Score: 50
Period size: 6 Copynumber: 12.5 Consensus size: 6
11517760 TAAAAAATTG
* * * * * * *
11517770 AAATAA AAGTAA AAAGAA AAAGAA AAGAAAA AGAAAAGA AAATAG TAATAA
1 AAATAA AAATAA AAATAA AAATAA AA-ATAA A-AATA-A AAATAA AAATAA
*
11517821 TAAATAA GAATAA AAATAA AAATAA AAA
1 -AAATAA AAATAA AAATAA AAATAA AAA
11517849 GATAGGAGGA
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
6 40 0.69
7 15 0.26
8 3 0.05
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:11519694 original size:60 final size:60
Alignment explanation
Indices: 11519620--11519736 Score: 216
Period size: 60 Copynumber: 1.9 Consensus size: 60
11519610 CGTGTCTCAC
*
11519620 GCCCATGTCGAAGAAATAGAATCAAGCCTTGTTCCTGGCACGCCTGTGGTTTTCCATCAT
1 GCCCATGTCAAAGAAATAGAATCAAGCCTTGTTCCTGGCACGCCTGTGGTTTTCCATCAT
*
11519680 GCCCATGTCAAAGAAATAGAATCGAGCCTTGTTCCTGGCACGCCTGTGGTTTTCCAT
1 GCCCATGTCAAAGAAATAGAATCAAGCCTTGTTCCTGGCACGCCTGTGGTTTTCCAT
11519737 TCCTACGCCC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (60 bp):
GCCCATGTCAAAGAAATAGAATCAAGCCTTGTTCCTGGCACGCCTGTGGTTTTCCATCAT
Found at i:11521214 original size:76 final size:76
Alignment explanation
Indices: 11521088--11521240 Score: 270
Period size: 76 Copynumber: 2.0 Consensus size: 76
11521078 TGGTAAGTTA
* * *
11521088 ATATGTAATTTCTTTAAGAGTTTGACAAAGTTATCGAATAGTTCTTCTGTTCTGTCTTTCGTCAT
1 ATATGTAATTTCTTTAAGAGTTTGACAAACTTACCGAATAGTTCTTCTGTTCTATCTTTCGTCAT
11521153 CGCTTTAGGAT
66 CGCTTTAGGAT
*
11521164 ATATGTAATTTCTTTAAGAGTTTGACAAACTTACCGAATTGTTCTTCTGTTCTATCTTTCGTCAT
1 ATATGTAATTTCTTTAAGAGTTTGACAAACTTACCGAATAGTTCTTCTGTTCTATCTTTCGTCAT
11521229 CGCTTTAGGAT
66 CGCTTTAGGAT
11521240 A
1 A
11521241 CGGCACACAA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (76 bp):
ATATGTAATTTCTTTAAGAGTTTGACAAACTTACCGAATAGTTCTTCTGTTCTATCTTTCGTCAT
CGCTTTAGGAT
Found at i:11522969 original size:40 final size:40
Alignment explanation
Indices: 11522904--11523187 Score: 381
Period size: 40 Copynumber: 7.1 Consensus size: 40
11522894 CGGAATACAA
* ** * *
11522904 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* *
11522944 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
*
11522984 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
11523024 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
*
11523064 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
* * * *
11523104 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
11523144 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
11523184 CCGG
1 CCGG
11523188 GTATCATTCA
Statistics
Matches: 221, Mismatches: 21, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
40 220 1.00
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:11523342 original size:64 final size:64
Alignment explanation
Indices: 11523274--11523462 Score: 142
Period size: 64 Copynumber: 3.0 Consensus size: 64
11523264 GAACACAAAC
11523274 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * ** * *
11523338 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCAAACACAA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTCATACACAC
*
11523395 AC
63 AT
11523397 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
11523461 AT
1 AT
11523463 GTCAATAATC
Statistics
Matches: 80, Mismatches: 34, Indels: 22
0.59 0.25 0.16
Matches are distributed among these distances:
58 1 0.01
59 24 0.30
60 7 0.09
61 7 0.09
62 7 0.09
63 7 0.09
64 26 0.32
65 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:11523375 original size:123 final size:123
Alignment explanation
Indices: 11523156--11523494 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
11523146 GGATATAATT
* * * * * * *
11523156 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
11523221 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
11523279 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
11523344 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
11523402 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
11523467 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
11523495 CACATAATTC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:11530429 original size:40 final size:40
Alignment explanation
Indices: 11530364--11530607 Score: 303
Period size: 40 Copynumber: 6.1 Consensus size: 40
11530354 CGGAATACAA
* ** * * *
11530364 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
11530404 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
11530444 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
11530484 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
11530524 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
11530564 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
11530604 CCGG
1 CCGG
11530608 GTATCATTCA
Statistics
Matches: 182, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 181 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:11530762 original size:64 final size:64
Alignment explanation
Indices: 11530694--11530882 Score: 142
Period size: 64 Copynumber: 3.0 Consensus size: 64
11530684 GAACACAAAC
11530694 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * ** * *
11530758 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCAAACACAA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTCATACACAC
*
11530815 AC
63 AT
11530817 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
11530881 AT
1 AT
11530883 GTCAATAATC
Statistics
Matches: 80, Mismatches: 34, Indels: 22
0.59 0.25 0.16
Matches are distributed among these distances:
58 1 0.01
59 24 0.30
60 7 0.09
61 7 0.09
62 7 0.09
63 7 0.09
64 26 0.32
65 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:11530795 original size:123 final size:123
Alignment explanation
Indices: 11530576--11530914 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
11530566 GGATATAATT
* * * * * * *
11530576 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
11530641 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
11530699 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
11530764 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
11530822 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
11530887 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
11530915 CACATAATTC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:11540571 original size:93 final size:93
Alignment explanation
Indices: 11540462--11540632 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
11540452 GCCCCTAAGT
*
11540462 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTTGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTTGCATCCATAAATGAACTCGGACTCAACTCA
11540526 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
11540555 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
11540620 CGAGTTCGGATGC
66 CGAGTTCGGATGC
11540633 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Done.