Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 47 of 292
Found at i:13176685 original size:12 final size:13
Alignment explanation
Indices: 13176657--13176683 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13176647 ATAATAAAGG
13176657 TTAAGTTAAAATT
1 TTAAGTTAAAATT
13176670 TTAAGTTAAAATT
1 TTAAGTTAAAATT
13176683 T
1 T
13176684 AATAAAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
TTAAGTTAAAATT
Found at i:13179821 original size:50 final size:50
Alignment explanation
Indices: 13179737--13179842 Score: 142
Period size: 50 Copynumber: 2.1 Consensus size: 50
13179727 AAAACTGAGC
* *
13179737 ACATCAGTCAGAATAGATCCTAAAGGCTGTTGAACTAAGCAGAGTTAAGG
1 ACATCAGTCAGAATAAATCCTAAAGGCTGCTGAACTAAGCAGAGTTAAGG
* * * *
13179787 ACATTAGTCAGAATAAAT-CTGAAAGGCTGCTGAACTGAGCAGAGTTGAGC
1 ACATCAGTCAGAATAAATCCT-AAAGGCTGCTGAACTAAGCAGAGTTAAGG
13179837 ACATCA
1 ACATCA
13179843 TTTAGGTAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 2 0.04
50 46 0.96
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (50 bp):
ACATCAGTCAGAATAAATCCTAAAGGCTGCTGAACTAAGCAGAGTTAAGG
Found at i:13184124 original size:7 final size:7
Alignment explanation
Indices: 13184114--13184152 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
13184104 AAAATGTAAA
13184114 ATGGAGT
1 ATGGAGT
13184121 ATGGAGT
1 ATGGAGT
13184128 ATGAAGAGT
1 ATG--GAGT
*
13184137 ATGGAGC
1 ATGGAGT
13184144 ATGGAGT
1 ATGGAGT
13184151 AT
1 AT
13184153 TTCAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 21 0.75
9 7 0.25
ACGTcount: A:0.33, C:0.03, G:0.38, T:0.26
Consensus pattern (7 bp):
ATGGAGT
Found at i:13184688 original size:24 final size:24
Alignment explanation
Indices: 13184661--13184730 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 24
13184651 TTTCTATATT
13184661 CCAGGATGGATCGCTGGAGCACTG
1 CCAGGATGGATCGCTGGAGCACTG
* * *
13184685 CCAGGATGGCTTGCCGGAGCACTG
1 CCAGGATGGATCGCTGGAGCACTG
*
13184709 CC-GGAATAGATCGCTGGAGCAC
1 CCAGG-ATGGATCGCTGGAGCAC
13184731 CGCTGGGAAC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
23 2 0.05
24 36 0.95
ACGTcount: A:0.21, C:0.27, G:0.36, T:0.16
Consensus pattern (24 bp):
CCAGGATGGATCGCTGGAGCACTG
Found at i:13185242 original size:58 final size:59
Alignment explanation
Indices: 13185148--13185262 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 59
13185138 ACAGGGACGA
* * *
13185148 TTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTGAATTCTAGC-TTTGGGATGG
1 TTCATTCATTATTGGGTACCGAACATGCAACAGTATCTGAATTCTACCTTTTGGGATGG
*
13185206 TTCATTCATTATTGGGTACCGAACATGTAACAGTATCTGAATTCTACCTTTTGGGAT
1 TTCATTCATTATTGGGTACCGAACATGCAACAGTATCTGAATTCTACCTTTTGGGAT
13185263 TGGGGAGGGA
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
58 44 0.85
59 8 0.15
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (59 bp):
TTCATTCATTATTGGGTACCGAACATGCAACAGTATCTGAATTCTACCTTTTGGGATGG
Found at i:13185516 original size:26 final size:26
Alignment explanation
Indices: 13185493--13185577 Score: 170
Period size: 26 Copynumber: 3.3 Consensus size: 26
13185483 GACATTCATG
13185493 TGTCTGAAACAGGGACAGGTTTCAGA
1 TGTCTGAAACAGGGACAGGTTTCAGA
13185519 TGTCTGAAACAGGGACAGGTTTCAGA
1 TGTCTGAAACAGGGACAGGTTTCAGA
13185545 TGTCTGAAACAGGGACAGGTTTCAGA
1 TGTCTGAAACAGGGACAGGTTTCAGA
13185571 TGTCTGA
1 TGTCTGA
13185578 TGGCACGGCA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 59 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (26 bp):
TGTCTGAAACAGGGACAGGTTTCAGA
Found at i:13188594 original size:35 final size:35
Alignment explanation
Indices: 13188555--13188626 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
13188545 CATCTCTGGA
* *
13188555 GCTTGGCAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* *
13188590 GCTTGGAAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
13188625 GC
1 GC
13188627 GATCCTAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:13193766 original size:35 final size:35
Alignment explanation
Indices: 13193720--13193791 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
13193710 CATCTCTGGA
* *
13193720 GCTTGGAAAATATGGAAAGTAATCTTCAAATATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
13193755 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
13193790 GC
1 GC
13193792 GATCCTAGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.28
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:13202268 original size:28 final size:28
Alignment explanation
Indices: 13202203--13202303 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
13202193 ATAGTGAATC
*
13202203 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
13202232 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
13202260 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
13202290 CGCACACTTAGTGC
1 CGCACACTTAGTGC
13202304 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:13210219 original size:28 final size:28
Alignment explanation
Indices: 13210154--13210254 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
13210144 ATAGTGAATC
*
13210154 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
13210183 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
13210211 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
13210241 CGCACACTTAGTGC
1 CGCACACTTAGTGC
13210255 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:13214251 original size:85 final size:84
Alignment explanation
Indices: 13214132--13214337 Score: 202
Period size: 85 Copynumber: 2.4 Consensus size: 84
13214122 AGTTACCTAC
* ** * * *
13214132 GGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATACTGCTCGAGGCTCCCGTACAT
1 GGTGTCCGAGGCTCTCGCACGA-CCAAGGGCCAAGGTACCAATACTGCCCGAGGCTCCCGCACAT
* *
13214196 CCGAGCCACCAAGGTGCCGAT
65 CCAAG-CACCAAGGTACCGAT
* ** **
13214217 GGTG-CTCGAGGCTC-CTTCACGACCAAGGGCCAAGGTTACTGATGGTGCCCGAGGCTCCCGCAC
1 GGTGTC-CGAGGCTCTC-GCACGACCAAGGGCCAAGG-TACCAATACTGCCCGAGGCTCCCGCAC
*
13214280 ATCCAAGCACCAAGGTACTGAT
63 ATCCAAGCACCAAGGTACCGAT
* *
13214302 GGTGTCCGAGGCTCTCGCACGACCAAGTGCCTAGGT
1 GGTGTCCGAGGCTCTCGCACGACCAAGGGCCAAGGT
13214338 TGCCGATGGT
Statistics
Matches: 99, Mismatches: 16, Indels: 13
0.77 0.12 0.10
Matches are distributed among these distances:
84 3 0.03
85 67 0.68
86 29 0.29
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.17
Consensus pattern (84 bp):
GGTGTCCGAGGCTCTCGCACGACCAAGGGCCAAGGTACCAATACTGCCCGAGGCTCCCGCACATC
CAAGCACCAAGGTACCGAT
Found at i:13214328 original size:42 final size:42
Alignment explanation
Indices: 13214132--13214826 Score: 401
Period size: 43 Copynumber: 16.4 Consensus size: 42
13214122 AGTTACCTAC
* * * *
13214132 GGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAAT
1 GGTGCCCGAGGCTCCCGCACGA-CCAAGCGCCTAGGTGCCGAT
** * * * * *
13214174 ACTGCTCGAGGCTCCCGTAC-ATCCGAGCCACCAAGGTGCCGAT
1 GGTGCCCGAGGCTCCCGCACGA-CCAAG-CGCCTAGGTGCCGAT
* ** * * * *
13214217 GGTGCTCGAGGCTCCTTCACGACCAAGGGCCAAGGTTACTGAT
1 GGTGCCCGAGGCTCCCGCACGACCAAGCGCCTAGG-TGCCGAT
* * * *
13214260 GGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTACTGAT
1 GGTGCCCGAGGCTCCCGCACGA-CCAAGCGCCTAGGTGCCGAT
* * *
13214302 GGTGTCCGAGGCTCTCGCACGACCAAGTGCCTAGGTTGCCGAT
1 GGTGCCCGAGGCTCCCGCACGACCAAGCGCCTAGG-TGCCGAT
* * * * * * *
13214345 GGT-CCTGAGGCTCTCGCATGACTAGGGGCCTAGGTTGTCGAT
1 GGTGCCCGAGGCTCCCGCACGACCAAGCGCCTAGG-TGCCGAT
* * * * *
13214387 GGTGCTCGAAGCTCTCGCACGACCAGGGGCCTAGGTGCCGAT
1 GGTGCCCGAGGCTCCCGCACGACCAAGCGCCTAGGTGCCGAT
* * *
13214429 GGTGCCCGAGGCTCCCGCACGGCTAA-CGGCCTAGGTTGCTGAT
1 GGTGCCCGAGGCTCCCGCACGACCAAGC-GCCTAGG-TGCCGAT
* * ** * *
13214472 GGT-CTCAAGGCTCTTGCACGACCAAGGGCCTAGGTTGCCGAG
1 GGTGCCCGAGGCTCCCGCACGACCAAGCGCCTAGG-TGCCGAT
* *
13214514 GGTGCCCGAGGCTCCAGCACGACCAGAG-TCCTAGGTTGCCGAT
1 GGTGCCCGAGGCTCCCGCACGACCA-AGCGCCTAGG-TGCCGAT
* * *
13214557 GGTGCCCAAGGCTCTCGCACGACCAATG-GCCTAGGTTGTCGAT
1 GGTGCCCGAGGCTCCCGCACGACCAA-GCGCCTAGG-TGCCGAT
* *
13214600 GGTGCTCGAGGCTCCCGCACGACCAATG-GCCTAGGTTACCGAT
1 GGTGCCCGAGGCTCCCGCACGACCAA-GCGCCTAGG-TGCCGAT
* * * * * *
13214643 GGCG-CTGAGGCTCTCACAC-ATCCAAGCACCAAGGTGCCGAT
1 GGTGCCCGAGGCTCCCGCACGA-CCAAGCGCCTAGGTGCCGAT
* * * * * *
13214684 GGTCCCCAACGCTCCCGCAC-ATCCAAGCACCAAGGTGCTGAT
1 GGTGCCCGAGGCTCCCGCACGA-CCAAGCGCCTAGGTGCCGAT
* * * *
13214726 GGTGCCCGAGGCTCCCGCACAACCAATG-GCCTAGTTTTCTGAT
1 GGTGCCCGAGGCTCCCGCACGACCAA-GCGCCTAG-GTGCCGAT
* * * * * *
13214769 AGTGTCCGAAGCTCCCGCAC-ATCAGAGGCACCAAGGTGCCGAT
1 GGTGCCCGAGGCTCCCGCACGACCA-A-GCGCCTAGGTGCCGAT
* *
13214812 GTTGCGCGAGGCTCC
1 GGTGCCCGAGGCTCC
13214827 TACACATCCG
Statistics
Matches: 519, Mismatches: 113, Indels: 41
0.77 0.17 0.06
Matches are distributed among these distances:
41 10 0.02
42 243 0.47
43 259 0.50
44 7 0.01
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (42 bp):
GGTGCCCGAGGCTCCCGCACGACCAAGCGCCTAGGTGCCGAT
Found at i:13214338 original size:85 final size:84
Alignment explanation
Indices: 13214180--13214967 Score: 460
Period size: 85 Copynumber: 9.3 Consensus size: 84
13214170 CAATACTGCT
* * * *
13214180 CGAGGCTCCCGTACATCCGAGCCACCAAGGTGCCGATGGTGCTCGAGGCTC-CTTCACGACCAAG
1 CGAGGCTCCCGCACATCCAAG-CACCAAGGTGCTGATGGTGC-CGAGGCTCTC-GCACGACCAAG
* * *
13214244 GGCCAAGGTTACTGATGGTGCC
63 GGCCTAGGTTGCCGATGGTGCC
* *
13214266 CGAGGCTCCCGCACATCCAAGCACCAAGGTACTGATGGTGTCCGAGGCTCTCGCACGACCAAGTG
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCTGATGGTG-CCGAGGCTCTCGCACGACCAAGGG
13214331 CCTAGGTTGCCGATGGT-CC
65 CCTAGGTTGCCGATGGTGCC
* * * * * ** * * *
13214350 TGAGGCTCTCGCATGA-CTAGGGGCCTAGGTTG-TCGATGGTGCTCGAAGCTCTCGCACGACCAG
1 CGAGGCTCCCGCA-CATCCAAGCACCAAGG-TGCT-GATGGTGC-CGAGGCTCTCGCACGACCAA
13214413 GGGCCTAGG-TGCCGATGGTGCC
62 GGGCCTAGGTTGCCGATGGTGCC
** * * * * *
13214435 CGAGGCTCCCGCACGGCTAA-CGGCCTAGGTTGCTGATGGT-CTCAAGGCTCTTGCACGACCAAG
1 CGAGGCTCCCGCACATCCAAGC-ACCAAGG-TGCTGATGGTGC-CGAGGCTCTCGCACGACCAAG
*
13214498 GGCCTAGGTTGCCGAGGGTGCC
63 GGCCTAGGTTGCCGATGGTGCC
* * * * *
13214520 CGAGGCTCCAGCACGA-CCAGAG-TCCTAGGTTGCCGATGGTGCCCAAGGCTCTCGCACGACCAA
1 CGAGGCTCCCGCAC-ATCCA-AGCACCAAGG-TGCTGATGGTG-CCGAGGCTCTCGCACGACCAA
* * *
13214583 TGGCCTAGGTTGTCGATGGTGCT
62 GGGCCTAGGTTGCCGATGGTGCC
* * * * * * *
13214606 CGAGGCTCCCGCACGA-CCAATG-GCCTAGGTTACCGATGGCGCTGAGGCTCTCACAC-ATCCAA
1 CGAGGCTCCCGCAC-ATCCAA-GCACCAAGG-TGCTGATGGTGCCGAGGCTCTCGCACGA-CCAA
** * *
13214668 GCACCAAGG-TGCCGATGGTCCC
62 GGGCCTAGGTTGCCGATGGTGCC
* * * * *
13214690 CAACGCTCCCGCACATCCAAGCACCAAGGTGCTGATGGTGCCCGAGGCTCCCGCACAACCAATGG
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCTGATGGTG-CCGAGGCTCTCGCACGACCAAGGG
* * * * *
13214755 CCTAGTTTTCTGATAGTGTC
65 CCTAGGTTGCCGATGGTGCC
* * * * *
13214775 CGAAGCTCCCGCACAT-CAGAGGCACCAAGGTGCCGATGTTGCGCGAGGCTC-CTACAC-ATCCG
1 CGAGGCTCCCGCACATCCA-A-GCACCAAGGTGCTGATGGTGC-CGAGGCTCTC-GCACGA-CCA
* *** * *
13214837 A-GGCACTAAGTTGTTAATGCTGCT
61 AGGGC-CTAGGTTGCCGATGGTGCC
* * * * * * * * *
13214861 CGAGGCTCCCGCATATCCGAGCACCAAGGTGCCGATGCTGCTTGAAGCTCTCGCAC-ACCGATGT
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCTGATGGTGC-CGAGGCTCTCGCACGACCAAGGG
* * ***
13214925 CCTAGGCTACCGATGGCATC
65 CCTAGGTTGCCGATGGTGCC
* *
13214945 CAAGGCTCCAGCACATCCAAGCA
1 CGAGGCTCCCGCACATCCAAGCA
13214968 GTAATATGCC
Statistics
Matches: 555, Mismatches: 115, Indels: 66
0.75 0.16 0.09
Matches are distributed among these distances:
83 10 0.02
84 145 0.26
85 244 0.44
86 154 0.28
87 2 0.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (84 bp):
CGAGGCTCCCGCACATCCAAGCACCAAGGTGCTGATGGTGCCGAGGCTCTCGCACGACCAAGGGC
CTAGGTTGCCGATGGTGCC
Found at i:13214415 original size:43 final size:43
Alignment explanation
Indices: 13214210--13214759 Score: 444
Period size: 42 Copynumber: 13.0 Consensus size: 43
13214200 GCCACCAAGG
* *
13214210 TGCCGATGGTGCTCGAGGCTC-CTTCACGACCAAGGGCCAAGGT
1 TGCCGATGGTGCTCGAGGCTCTC-GCACGACCAAGGGCCTAGGT
* * * * ** *
13214253 TACTGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCTCGAGGCTCTCGCACGA-CCAAGGGCCTAGGT
* * *
13214295 TACTGATGGTG-TCCGAGGCTCTCGCACGACCAAGTGCCTAGGT
1 TGCCGATGGTGCT-CGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * * *
13214338 TGCCGATGGTCCT-GAGGCTCTCGCATGACTAGGGGCCTAGGT
1 TGCCGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * *
13214380 TGTCGATGGTGCTCGAAGCTCTCGCACGACCAGGGGCCTAGG-
1 TGCCGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * * * *
13214422 TGCCGATGGTGCCCGAGGCTCCCGCACGGCTAACGGCCTAGGT
1 TGCCGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * *
13214465 TGCTGATGGT-CTCAAGGCTCTTGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * *
13214507 TGCCGAGGGTGCCCGAGGCTC-CAGCACGACC-AGAGTCCTAGGT
1 TGCCGATGGTGCTCGAGGCTCTC-GCACGACCAAG-GGCCTAGGT
* * *
13214550 TGCCGATGGTGCCCAAGGCTCTCGCACGACCAATGGCCTAGGT
1 TGCCGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * *
13214593 TGTCGATGGTGCTCGAGGCTCCCGCACGACCAATGGCCTAGGT
1 TGCCGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * * ** *
13214636 TACCGATGGCGCT-GAGGCTCTCACAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCTCGAGGCTCTCGCACGA-CCAAGGGCCTAGGT
* * * * * ** *
13214677 TGCCGATGGTCCCCAACGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCTCGAGGCTCTCGCACGA-CCAAGGGCCTAGGT
* * * * *
13214719 TGCTGATGGTGCCCGAGGCTCCCGCACAACCAATGGCCTAG
1 TGCCGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAG
13214760 TTTTCTGATA
Statistics
Matches: 413, Mismatches: 78, Indels: 33
0.79 0.15 0.06
Matches are distributed among these distances:
41 10 0.02
42 215 0.52
43 184 0.45
44 4 0.01
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (43 bp):
TGCCGATGGTGCTCGAGGCTCTCGCACGACCAAGGGCCTAGGT
Found at i:13214430 original size:127 final size:128
Alignment explanation
Indices: 13214210--13214641 Score: 432
Period size: 127 Copynumber: 3.4 Consensus size: 128
13214200 GCCACCAAGG
* * * * * *
13214210 TGCCGATGGTGCTCGAGGCTC-CTTCACGACCAAGGGCCAAGGTTACTGATGGTGCCCGAGGCTC
1 TGCCGATGGT-CTCGAGGCTCTC-GCACGACCAAGGGCCTAGGTTGCCGAGGGTGCCCGAAGCTC
* * * * * *
13214274 CCGCAC-ATCCA-AGCACCAAGG-TACTGATGGTGTCCGAGGCTCTCGCACGACCAAGTGCCTAG
64 CAGCACGA-CCAGAG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGTGCCTAG
13214336 GT
127 GT
* * * * * *
13214338 TGCCGATGGTC-CTGAGGCTCTCGCATGACTAGGGGCCTAGGTTGTCGATGGTGCTCGAAGCTCT
1 TGCCGATGGTCTC-GAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAGGGTGCCCGAAGCTC-
* * * *
13214402 C-GCACGACCAGGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGGCTAACG-GCCTAGG
64 CAGCACGACCAGAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAA-GTGCCTAGG
13214464 T
128 T
* * * *
13214465 TGCTGATGGTCTCAAGGCTCTTGCACGACCAAGGGCCTAGGTTGCCGAGGGTGCCCGAGGCTCCA
1 TGCCGATGGTCTCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAGGGTGCCCGAAGCTCCA
* *
13214530 GCACGACCAGAGTCCTAGGTTGCCGATGGTGCCCAAGGCTCTCGCACGACCAA-TGGCCTAGGT
66 GCACGACCAGAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGT-GCCTAGGT
* * * *
13214593 TGTCGATGGTGCTCGAGGCTCCCGCACGACCAATGGCCTAGGTTACCGA
1 TGCCGATGGT-CTCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGA
13214642 TGGCGCTGAG
Statistics
Matches: 250, Mismatches: 42, Indels: 23
0.79 0.13 0.07
Matches are distributed among these distances:
126 2 0.01
127 154 0.62
128 61 0.24
129 33 0.13
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (128 bp):
TGCCGATGGTCTCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAGGGTGCCCGAAGCTCCA
GCACGACCAGAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGTGCCTAGGT
Found at i:13214826 original size:43 final size:43
Alignment explanation
Indices: 13214644--13214901 Score: 152
Period size: 43 Copynumber: 6.0 Consensus size: 43
13214634 GTTACCGATG
* * * *
13214644 GCGCTGAGGCTCTCACACATCC-AAGCACCAAGGTGCCGATGGT
1 GCGC-GAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGCT
* * * * * * *
13214687 CCCCAACGCTCCCGCACATCC-AAGCACCAAGGTGCTGATGGT
1 GCGCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGCT
* * * * * * *
13214729 GCCCGAGGCTCCCGCACAACCAATGG--CCTAGTTTTCTGATAG-T
1 GCGCGAGGCTCCCGCACATCCGA-GGCACCAAG-GTGCCGAT-GCT
* * *
13214772 GTC-CGAAGCTCCCGCACATCAGAGGCACCAAGGTGCCGATGTT
1 G-CGCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGCT
** * * ***
13214815 GCGCGAGGCTCCTACACATCCGAGGCACTAAGTTGTTAATGCT
1 GCGCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGCT
* *
13214858 GCTCGAGGCTCCCGCATATCCGA-GCACCAAGGTGCCGATGCT
1 GCGCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGCT
13214900 GC
1 GC
13214902 TTGAAGCTCT
Statistics
Matches: 164, Mismatches: 42, Indels: 19
0.73 0.19 0.08
Matches are distributed among these distances:
42 74 0.45
43 83 0.51
44 7 0.04
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.18
Consensus pattern (43 bp):
GCGCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGCT
Found at i:13215730 original size:58 final size:59
Alignment explanation
Indices: 13215633--13215754 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 59
13215623 GGGAGGGACA
* * **
13215633 GGGAGGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATTCTA-CTTTT
1 GGGATGATTCATTCATTATTGGGTACCAAACATGCAACGGTATCCGAATTCTACCTTTT
* **
13215691 GGGATGATTCATTCATTATTGGGTACCAAACATGTAACGGTATGTGAATTCTACCTTTT
1 GGGATGATTCATTCATTATTGGGTACCAAACATGCAACGGTATCCGAATTCTACCTTTT
13215750 GGGAT
1 GGGAT
13215755 TGGGGAGGGA
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
58 46 0.82
59 10 0.18
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (59 bp):
GGGATGATTCATTCATTATTGGGTACCAAACATGCAACGGTATCCGAATTCTACCTTTT
Found at i:13226990 original size:26 final size:26
Alignment explanation
Indices: 13226967--13227035 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
13226957 GACATTCATG
13226967 TGTCTGAAACAGGGACAGGTTTCAGA
1 TGTCTGAAACAGGGACAGGTTTCAGA
13226993 TGTCTGAAACAGGGACAGGTTTCAGA
1 TGTCTGAAACAGGGACAGGTTTCAGA
*
13227019 TGTCTGAAATAGGGACA
1 TGTCTGAAACAGGGACA
13227036 TTTTTTTTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.23
Consensus pattern (26 bp):
TGTCTGAAACAGGGACAGGTTTCAGA
Found at i:13234497 original size:43 final size:42
Alignment explanation
Indices: 13234433--13234571 Score: 127
Period size: 43 Copynumber: 3.3 Consensus size: 42
13234423 TTTTCTTTAG
* * * *
13234433 CCCGCACATCCGAGGCACTAGGGTGCCCATGCTGCTCGAGGCA
1 CCCGCACATCC-AAGCACTAGGGTGCCAATGCTGATCGAGGCT
* * * ** *
13234476 CCCGCACATCCAACGTC-CTAGGTTGCCTACGAAGTTCGAGGCT
1 CCCGCACATCCAA-G-CACTAGGGTGCCAATGCTGATCGAGGCT
* *
13234519 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGATCGAGGCT
1 CCCGCACATCCAAGCACTAGGGTGCCAATGCTGATCGAGGCT
*
13234561 CCCGTACATCC
1 CCCGCACATCC
13234572 GAGGCACCAA
Statistics
Matches: 76, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
41 1 0.01
42 30 0.39
43 44 0.58
44 1 0.01
ACGTcount: A:0.22, C:0.37, G:0.24, T:0.17
Consensus pattern (42 bp):
CCCGCACATCCAAGCACTAGGGTGCCAATGCTGATCGAGGCT
Found at i:13234606 original size:43 final size:42
Alignment explanation
Indices: 13234512--13234865 Score: 146
Period size: 43 Copynumber: 8.3 Consensus size: 42
13234502 CTACGAAGTT
*
13234512 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGAT
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGAC
* * * * *
13234554 CGAGGCTCCCGTACATCCGAGGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACATCC-AAGCACCAAGGTGCCAATGCTGAC
* * ** * * *
13234597 CGAGACTCCCTCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-C
1 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGAC
* ** * ** * *
13234639 CTGAGGCTCCCGCACAACCAAGGGCCTAGGTGCTGAGGGTG-C
1 C-GAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGAC
* * * *** *
13234681 CGAGGCTCTCGCATGA-CTAAGGGTCTAGGTTGCCAATAG-TG-C
1 CGAGGCTCCCGCA-CATCCAAGCACCAAGG-TGCCAAT-GCTGAC
* * * ** * * * *
13234723 TCGAGGCTCCCACACAACCAGGGGCCTAGGTTGCCGATGGTGCC
1 -CGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCAATGCTGAC
* ** * * * *
13234767 CGAGGCTCCTGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGAC
* *
13234810 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCC
1 CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGAC
13234852 CGAGGCTCCCGCAC
1 CGAGGCTCCCGCAC
13234866 GACCAAGGGC
Statistics
Matches: 257, Mismatches: 41, Indels: 28
0.79 0.13 0.09
Matches are distributed among these distances:
41 22 0.09
42 74 0.29
43 158 0.61
44 3 0.01
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (42 bp):
CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGAC
Found at i:13234860 original size:212 final size:212
Alignment explanation
Indices: 13234581--13235543 Score: 833
Period size: 212 Copynumber: 4.5 Consensus size: 212
13234571 CGAGGCACCA
* * * * ** *
13234581 AGGTGCCGATGGTGCCCGAGACTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGC
1 AGGTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGCACCTAGGTTGCCGATGGTGCCCGAGGC
* * * * * * *
13234646 TCCCGCACAACCAAGGGCCTAGG-TGCTGAGGGTGCCGAGGCTCTCGCATGACTAAGGGTCTAGG
66 TCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCGAGGCTCTCGCACGACCAAGGGCCTAGG
* * ** * *
13234710 TTGCCAATAGTGCTCGAGGCTCCCACACAACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
131 TTGCCGATAGTGC-CAAGGCTCCCGTACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTC
13234775 CTGCACGACCAAGGGCCT
195 CTGCACGACCAAGGGCCT
* * *
13234793 AGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCAATGGTGCCCGAGG
1 AGG-TGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGCACCTAGGTTGCCGATGGTGCCCGAGG
* * * *
13234857 CTCCCGCACGACCAAGGGCCTAGG-TACTGATGGTTCCGA-GCTTCTCGTACGACCAAGGGCCTT
65 CTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCGAGGC-TCTCGCACGACCAAGGGCCTA
* * * * * * * * *
13234920 GGTTGCCGATGGTGCCCGAGGCTCCCTTACGACCAGGGGCCTAGGTTACCGATAGTACCCAAGGG
129 GGTTGCCGATAGTG-CCAAGGCTCCCGTACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGC
* * *
13234985 TCCTGCATGACTAAGGGTCT
193 TCCTGCACGACCAAGGGCCT
* * * * * ** * * *
13235005 AGATTGCTGATGGT-TCCGAGGCTCTCGCACAACTAGGGGCCTAGGTTGCTGATGGTGTCTGAGG
1 AG-GTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGCACCTAGGTTGCCGATGGTGCCCGAGG
*
13235069 CTCCCGCACGACC-AGAGGCTTAGGTTACCGATGGTGCCAGAGGCTC-CTGCACGACCAAGGGCC
65 CTCCCGCACGACCAAG-GGCCTAGGTTACCGATGGTGCC-GAGGCTCTC-GCACGACCAAGGGCC
* * * * **
13235132 TAGGATGCCGATGGTGCCAAGGCTCCCGTA-AGACCAAGGGCCGAAGTTGCCGATGGTGCCTGAG
127 TAGGTTGCCGATAGTGCCAAGGCTCCCGTACA-ACCAAGGGCCTAGGTTGCCGATGGTGCCCAAG
* * *
13235196 GCTCCCGCACGACCAGGGGCTT
191 GCTCCTGCACGACCAAGGGCCT
* * **
13235218 AGGTGCCGATGGTGCCCGAGGCTCCCACACAACCAA-CAGCCTAGGTTATCGATGGT-CCCGAGG
1 AGGTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGCA-CCTAGGTTGCCGATGGTGCCCGAGG
* * * * * * *
13235281 CTCTCGCACGACCAAGGGCCTAGGTTGCCAATAGTGCCCGAGGCTCCCGCACTACCAGGGGCCTA
65 CTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTG-CCGAGGCTCTCGCACGACCAAGGGCCTA
* * ** * **
13235346 GGTTGCCGATAGCGCAAAGGCTTTCGGATGACCAAGGGCCTAGGTTGCCGA---TGCCACTAAGG
129 GGTTGCCGATAGTGCCAAGGCTCCCGTACAACCAAGGGCCTAGGTTGCCGATGGTGCC-C-AAGG
* ** *
13235408 CTCTTGCAC-ATCCAAGCACCA
192 CTCCTGCACGA-CCAAGGGCCT
* * * * * *
13235429 AGGTGCCGATGGT-TCCTGAGGCTCCCGCACATCTAAGCACC-AAGATGCTGATGGTGCCCAAGG
1 AGGTGCCGATGGTGTCC-GAGGCTCCCGCACAACCAAGCACCTAGGTTGCCGATGGTGCCCGAGG
* * * * * *
13235492 CTCCCACACAACCAATGGCCTAGTTTACCGATGGTGTCCGAGACTCCCGCAC
65 CTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTG-CCGAGGCTCTCGCAC
13235544 ATCTGAAGCA
Statistics
Matches: 599, Mismatches: 129, Indels: 47
0.77 0.17 0.06
Matches are distributed among these distances:
209 4 0.01
210 12 0.02
211 122 0.20
212 291 0.49
213 136 0.23
214 32 0.05
215 2 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (212 bp):
AGGTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGCACCTAGGTTGCCGATGGTGCCCGAGGC
TCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCGAGGCTCTCGCACGACCAAGGGCCTAGG
TTGCCGATAGTGCCAAGGCTCCCGTACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCC
TGCACGACCAAGGGCCT
Found at i:13234873 original size:85 final size:85
Alignment explanation
Indices: 13234512--13235543 Score: 725
Period size: 85 Copynumber: 12.2 Consensus size: 85
13234502 CTACGAAGTT
** * * * * * *
13234512 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGAT-CGAGGCTCCCGTACATCCGA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-TCCGAGGCTCCCGCACAACCAA
* *
13234574 GGCACCAAGGTGCCGATGGTGCC
64 GG-GCCTAGGTGCCGATGGTGCC
* *
13234597 CGAGACTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCTGAGGCTCCCGCACAACCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACAACCAAG
* *
13234661 GGCCTAGGTGCTGAGGGTG-C
65 GGCCTAGGTGCCGATGGTGCC
* * * * * * * *
13234681 CGAGGCTCTCGCATGACTAAGGGTCTAGGTTGCCAATAGTG-CTCGAGGCTCCCACACAACCAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC-CGAGGCTCCCGCACAACCAAG
13234745 GGCCTAGGTTGCCGATGGTGCC
65 GGCCTAGG-TGCCGATGGTGCC
* * *
13234767 CGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGG
* * *
13234832 ACCAAGGTGCCAATGGTGCC
66 GCCTAGGTGCCGATGGTGCC
* * * * *
13234852 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TACTGATGGT-TCCGA-GCTTCTCGTACGACCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGC-TCCCGCACAACCAAG
*
13234914 GGCCTTGGTTGCCGATGGTGCC
65 GGCCTAGG-TGCCGATGGTGCC
** * * * ** * * * ** *
13234936 CGAGGCTCCCTTACGACCAGGGGCCTAGGTTACCGATAGTACCCAAGGGTCCTGCATGACTAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGG
* * * *
13235001 GTCTAGATTGCTGATGGT-TC
66 GCCTAG-GTGCCGATGGTGCC
* * * * * * *
13235021 CGAGGCTCTCGCACAACTAGGGGCCTAGGTTGCTGATGGTGTCTGAGGCTCCCGCACGACC-AGA
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAG-
* *
13235085 GGCTTAGGTTACCGATGGTGCC
65 GGCCTAGG-TGCCGATGGTGCC
* * * * *
13235107 AGAGGCTCCTGCACGACCAAGGGCCTAGGATGCCGATGGTG-CCAAGGCTCCCGTA-AGACCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-ACCAAG
* *
13235170 GGCCGAAGTTGCCGATGGTGCC
65 GGCC-TAGGTGCCGATGGTGCC
* * * * * **
13235192 TGAGGCTCCCGCACGACCAGGGGCTTAGG-TGCCGATGGTGCCCGAGGCTCCCACACAACCAACA
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGG
**
13235256 GCCTAGGTTATCGATGGT-CC
66 GCCTAGG-TGCCGATGGTGCC
* * * * * *
13235276 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCAATAGTGCCCGAGGCTCCCGCACTACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGG
* *
13235341 GCCTAGGTTGCCGATAGCG-C
66 GCCTAGG-TGCCGATGGTGCC
** ** * * *** ** ** * *
13235361 AAAGGCTTTCGGATGACCAAGGGCCTAGGTTGCCGAT-GCCACTAAGGCTCTTGCACATCCAAGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGG
* * *
13235425 ACCAAGGTGCCGATGGTTCC
66 GCCTAGGTGCCGATGGTGCC
* * ** * * * * * * *
13235445 TGAGGCTCCCGCAC-ATCTAAGCACC-AAGATGCTGATGGTGCCCAAGGCTCCCACACAACCAAT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAG
* * *
13235508 GGCCTAGTTTACCGATGGTGTC
65 GGCCTAG-GTGCCGATGGTGCC
*
13235530 CGAGACTCCCGCAC
1 CGAGGCTCCCGCAC
13235544 ATCTGAAGCA
Statistics
Matches: 730, Mismatches: 188, Indels: 58
0.75 0.19 0.06
Matches are distributed among these distances:
82 2 0.00
83 37 0.05
84 206 0.28
85 331 0.45
86 152 0.21
87 2 0.00
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (85 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACAACCAAGG
GCCTAGGTGCCGATGGTGCC
Found at i:13234951 original size:43 final size:43
Alignment explanation
Indices: 13234584--13235543 Score: 781
Period size: 43 Copynumber: 22.6 Consensus size: 43
13234574 GGCACCAAGG
* *
13234584 TGCCGATGGTGCCCGAGACTCCCTCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
13234627 TGCCGATGGTGCCTGAGGCTCCCGCACAACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
13234669 TGCTGAGGGTG-CCGAGGCTCTCGCATGACTAAGGGTCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
13234711 TGCCAATAGTGCTCGAGGCTCCCACACAACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
13234754 TGCCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
13234797 TGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
*
13234839 TGCCAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
13234881 TACTGATGGT-TCCGA-GCTTCTCGTACGACCAAGGGCCTTGGT
1 TGCCGATGGTGCCCGAGGC-TCCCGCACGACCAAGGGCCTAGGT
** *
13234923 TGCCGATGGTGCCCGAGGCTCCCTTACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * * * * * *
13234966 TACCGATAGTACCCAAGGGTCCTGCATGACTAAGGGTCTAGAT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
13235009 TGCTGATGGT-TCCGAGGCTCTCGCACAACTAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
13235051 TGCTGATGGTGTCTGAGGCTCCCGCACGACC-AGAGGCTTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGT
* * * *
13235094 TACCGATGGTGCCAGAGGCTCCTGCACGACCAAGGGCCTAGGA
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
13235137 TGCCGATGGTG-CCAAGGCTCCCGTAAGACCAAGGGCCGAAGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
13235179 TGCCGATGGTGCCTGAGGCTCCCGCACGACCAGGGGCTTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * **
13235221 TGCCGATGGTGCCCGAGGCTCCCACACAACCAACAGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
** *
13235264 TATCGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
13235306 TGCCAATAGTGCCCGAGGCTCCCGCACTACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** ** * *
13235349 TGCCGATAGCG-CAAAGGCTTTCGGATGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** ** *
13235391 TGCCGA---TGCCACTAAGGCTCTTGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCC-C-GAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * ** * *
13235432 TGCCGATGGTTCCTGAGGCTCCCGCAC-ATCTAAGCACC-AAGA
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * * *
13235474 TGCTGATGGTGCCCAAGGCTCCCACACAACCAATGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
13235517 TACCGATGGTGTCCGAGACTCCCGCAC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC
13235544 ATCTGAAGCA
Statistics
Matches: 717, Mismatches: 176, Indels: 48
0.76 0.19 0.05
Matches are distributed among these distances:
39 1 0.00
40 3 0.00
41 57 0.08
42 297 0.41
43 352 0.49
44 7 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:13235302 original size:340 final size:339
Alignment explanation
Indices: 13234586--13235348 Score: 897
Period size: 340 Copynumber: 2.2 Consensus size: 339
13234576 CACCAAGGTG
* * * **
13234586 CCGATGGTGCCCGAGACTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATAGTACCCAAGGCTCCCG
** *
13234651 CACAACCAAGGGCCTAGGTGCTGAGGGTGCCGAGGCTCTCGCATGACTAAGGGTCTAGGTTGCCA
66 CACAACCAAGGGCCTAGGTGCTGAGGGTGCCGAGGCTCTCGCACAACTAAGGGCCTAGGTTGCCA
* * *
13234716 ATAGTGCTCGAGGCTCCCACACAACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCAC
131 ATAGTGCTCGAGGCTCCCACACAACCAGAGGCCTAGGTTACCGATGGTGCCAGAGGCTCCTGCAC
* * *
13234781 GACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAAT
196 GACCAAGGGCCTAGGATGCCGATGGTGTCCAAGGCTCCCGCACAACCAAGCACCAAGGTGCCAAT
* * * ** *
13234846 GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTACTGATGGTTCCGAGCTTCTCGTACGACC
261 GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTACCGATGGTCCCGAGCTTCCCACACAACC
** * *
13234911 AAGGGCCTTGGTTG
326 AACAGCCTAGGTTA
* * * * *
13234925 CCGATGGTGCCCGAGGCTCCCTTACGACCAGGGGCCTAGGTTACCGATAGTACCCAAGGGTCCTG
1 CCGATGGTGCCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATAGTACCCAAGGCTCCCG
** * * * * * * *
13234990 CATGACTAAGGGTCTAGATTGCTGATGGTTCCGAGGCTCTCGCACAACTAGGGGCCTAGGTTGCT
66 CACAACCAAGGGCCTAG-GTGCTGAGGGTGCCGAGGCTCTCGCACAACTAAGGGCCTAGGTTGCC
* * * * *
13235055 GATGGTG-TCTGAGGCTCCCGCACGACCAGAGGCTTAGGTTACCGATGGTGCCAGAGGCTCCTGC
130 AATAGTGCTC-GAGGCTCCCACACAACCAGAGGCCTAGGTTACCGATGGTGCCAGAGGCTCCTGC
* ** *
13235119 ACGACCAAGGGCCTAGGATGCCGATGGTG-CCAAGGCTCCCGTA-AGACCAAGGGCCGAAGTTGC
194 ACGACCAAGGGCCTAGGATGCCGATGGTGTCCAAGGCTCCCGCACA-ACCAAGCACC-AAGGTGC
* * * * *
13235182 CGATGGTGCCTGAGGCTCCCGCACGACCAGGGGCTTAGGTGCCGATGGTGCCCGAGGC-TCCCAC
257 CAATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTACCGATGGT-CCCGA-GCTTCCCAC
13235246 ACAACCAACAGCCTAGGTTA
320 ACAACCAACAGCCTAGGTTA
* * * * * *
13235266 TCGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCAATAGTGCCCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATAGTACCCAAGGCTCCCG
* *
13235330 CACTACCAGGGGCCTAGGT
66 CACAACCAAGGGCCTAGGT
13235349 TGCCGATAGC
Statistics
Matches: 349, Mismatches: 69, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
338 1 0.00
339 90 0.26
340 227 0.65
341 29 0.08
342 2 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (339 bp):
CCGATGGTGCCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATAGTACCCAAGGCTCCCG
CACAACCAAGGGCCTAGGTGCTGAGGGTGCCGAGGCTCTCGCACAACTAAGGGCCTAGGTTGCCA
ATAGTGCTCGAGGCTCCCACACAACCAGAGGCCTAGGTTACCGATGGTGCCAGAGGCTCCTGCAC
GACCAAGGGCCTAGGATGCCGATGGTGTCCAAGGCTCCCGCACAACCAAGCACCAAGGTGCCAAT
GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTACCGATGGTCCCGAGCTTCCCACACAACC
AACAGCCTAGGTTA
Found at i:13235658 original size:42 final size:42
Alignment explanation
Indices: 13235413--13235671 Score: 191
Period size: 43 Copynumber: 6.1 Consensus size: 42
13235403 TAAGGCTCTT
* *
13235413 GCACATCCAAGCACCAAGGTGCCGATGGTTC-CTGAGGCTCCC
1 GCACATCCAAGCACCAAGGTGCCGATGCTGCTC-GAGGCTCCC
* * * * * *
13235455 GCACATCTAAGCACCAAGATGCTGATGGTGCCCAAGGCTCCC
1 GCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCC
* * * * * * * *
13235497 ACACAACCAATG-GCCTAGTTTACCGATGGTG-TCCGAGACTCCC
1 GCACATCCAA-GCACCAAG-GTGCCGATGCTGCT-CGAGGCTCCC
* * *
13235540 GCACATCTGAAGCACCAAGGTACCGATGCTGCTAGAGGCTCCC
1 GCACATC-CAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCC
* * * *
13235583 GCACATCTGAGGCTCCAAGTTGCCGATGCTGCTCGAGGCTCCC
1 GCACATC-CAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCC
* * * * *
13235626 GCACATCCGAGCACCAAGCTGCCGATGTTGCTCGAAGCTCTC
1 GCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCC
13235668 GCAC
1 GCAC
13235672 CACCGACGTC
Statistics
Matches: 172, Mismatches: 38, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
42 77 0.45
43 88 0.51
44 7 0.04
ACGTcount: A:0.23, C:0.34, G:0.25, T:0.18
Consensus pattern (42 bp):
GCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCC
Found at i:13235690 original size:85 final size:85
Alignment explanation
Indices: 13235432--13235695 Score: 214
Period size: 85 Copynumber: 3.1 Consensus size: 85
13235422 AGCACCAAGG
* * * * *
13235432 TGCCGATGGT-TCCTGAGGCTCCCGCACATCTAAGCACCAAGATGCTGATGGTGC-CCAAGGCTC
1 TGCCGATGCTGTCC-GAGGCTCCCGCACATCTGAGCACCAAGATGCCGATGCTGCTCGAA-GCTC
* * * * * *
13235495 CCACACAACCAATGGCCTAGTT
64 CCGCACCACCGACGTCCTAGGT
* * * * * * *
13235517 TACCGATGGTGTCCGAGACTCCCGCACATCTGAAGCACCAAGGTACCGATGCTGCTAGAGGCTCC
1 TGCCGATGCTGTCCGAGGCTCCCGCACATCTG-AGCACCAAGATGCCGATGCTGCTCGAAGCTCC
* * *
13235582 CGCA-CATCTGAGGCTCC-AAGT
65 CGCACCA-CCGACG-TCCTAGGT
* * * *
13235603 TGCCGATGCTG-CTCGAGGCTCCCGCACATCCGAGCACCAAGCTGCCGATGTTGCTCGAAGCTCT
1 TGCCGATGCTGTC-CGAGGCTCCCGCACATCTGAGCACCAAGATGCCGATGCTGCTCGAAGCTCC
13235667 CGCACCACCGACGTCCTAGGT
65 CGCACCACCGACGTCCTAGGT
13235688 TGCCGATG
1 TGCCGATG
13235696 GCTTTCAAGG
Statistics
Matches: 140, Mismatches: 31, Indels: 16
0.75 0.17 0.09
Matches are distributed among these distances:
84 3 0.02
85 72 0.51
86 62 0.44
87 3 0.02
ACGTcount: A:0.21, C:0.34, G:0.25, T:0.19
Consensus pattern (85 bp):
TGCCGATGCTGTCCGAGGCTCCCGCACATCTGAGCACCAAGATGCCGATGCTGCTCGAAGCTCCC
GCACCACCGACGTCCTAGGT
Found at i:13235925 original size:24 final size:24
Alignment explanation
Indices: 13235893--13236016 Score: 131
Period size: 24 Copynumber: 5.2 Consensus size: 24
13235883 TCTATATTTT
* *
13235893 GGGATGGCTCACCGGAGAACCGCC
1 GGGATGGCTCGCCGGAGCACCGCC
* **
13235917 GGGATGGCTCGCCGAAGCACCTTC
1 GGGATGGCTCGCCGGAGCACCGCC
* *
13235941 GGGATGGCTCGTCGGAGCACCGCT
1 GGGATGGCTCGCCGGAGCACCGCC
* * *
13235965 GGGATGGCTCACTGGAGCACCACC
1 GGGATGGCTCGCCGGAGCACCGCC
* * *
13235989 GGAATGGATCGCCCGAGCACCGCC
1 GGGATGGCTCGCCGGAGCACCGCC
13236013 GGGA
1 GGGA
13236017 ACCTAACCGG
Statistics
Matches: 78, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 78 1.00
ACGTcount: A:0.19, C:0.32, G:0.37, T:0.12
Consensus pattern (24 bp):
GGGATGGCTCGCCGGAGCACCGCC
Found at i:13236516 original size:58 final size:59
Alignment explanation
Indices: 13236419--13236539 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 59
13236409 GGAAGGGACA
* * *
13236419 GGGACGATTCATTCATTTTTTGGTACCAGACATGCAACGGTATCCAAATTCTACC-TTT
1 GGGACGATTCATTCATTATTAGGTACCAGACAAGCAACGGTATCCAAATTCTACCTTTT
* *
13236477 GGGACGATTCATTCATTATTAGGTACC-GAACAAGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTAGGTACCAG-ACAAGCAACGGTATCCAAATTCTACCTTTT
13236536 GGGA
1 GGGA
13236540 TTGGAGAGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
57 1 0.02
58 48 0.86
59 7 0.12
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTAGGTACCAGACAAGCAACGGTATCCAAATTCTACCTTTT
Found at i:13240058 original size:35 final size:35
Alignment explanation
Indices: 13240019--13240088 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
13240009 CATCTCTGAA
*
13240019 GCTTGGAAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
13240054 GCTTGGTAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
13240089 ACGATCCTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.29
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:13245244 original size:35 final size:35
Alignment explanation
Indices: 13245198--13245269 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
13245188 CATCTCTGGA
* *
13245198 GCTTGGCAAATATGAAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGAAAAGGAATCTTCAAAGATAT
* * *
13245233 GCTTGGAAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGAAAAGGAATCTTCAAAGATAT
13245268 GC
1 GC
13245270 GATCCTAGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGAAAAGGAATCTTCAAAGATAT
Found at i:13245965 original size:12 final size:12
Alignment explanation
Indices: 13245930--13245965 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
13245920 TCTAGCCCGT
*
13245930 TGACTCGCACAT
1 TGACTCGCACAC
13245942 TGACTCGCACAC
1 TGACTCGCACAC
13245954 TGACTCGCACAC
1 TGACTCGCACAC
13245966 ATGTTAGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.25, C:0.39, G:0.17, T:0.19
Consensus pattern (12 bp):
TGACTCGCACAC
Found at i:13255452 original size:43 final size:43
Alignment explanation
Indices: 13255403--13255587 Score: 232
Period size: 43 Copynumber: 4.3 Consensus size: 43
13255393 TTTTCAGAAA
* *
13255403 AAACGCCACTAAAGACCAGGACTTTTAGCGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTTCAC
* ** * * *
13255446 AAACGCCGCTTAAGATGATGACCTTTAGCGGCACTTTTTTTGA-
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGC-TTTTTTCAC
13255489 AAACGCCGCTAAAGACC-GTGACCTTTAGCGGCGCTTTTTTCAC
1 AAACGCCGCTAAAGACCAG-GACCTTTAGCGGCGCTTTTTTCAC
* *
13255532 AAACGCCGCTAAAGACCATGACCTTTAGCGGCG-TTTTTTTAGC
1 AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTTCA-C
13255575 AAACGCCGCTAAA
1 AAACGCCGCTAAA
13255588 AATAATGATC
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
42 14 0.12
43 100 0.83
44 7 0.06
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTTCAC
Found at i:13255505 original size:86 final size:86
Alignment explanation
Indices: 13255402--13255587 Score: 277
Period size: 86 Copynumber: 2.2 Consensus size: 86
13255392 TTTTTCAGAA
* * * **
13255402 AAAACGCCACTAAAGACCAG-GACTTTTAGCGGCGCTTTTTTCACAAACGCCGCTTAAGATGATG
1 AAAACGCCGCTAAAGACC-GTGACCTTTAGCGGCGCTTTTTTCACAAACGCCGCTAAAGACCATG
13255466 ACCTTTAGCGGCACTTTTTTT-G
65 ACCTTTAGCGGC-CTTTTTTTAG
13255488 AAAACGCCGCTAAAGACCGTGACCTTTAGCGGCGCTTTTTTCACAAACGCCGCTAAAGACCATGA
1 AAAACGCCGCTAAAGACCGTGACCTTTAGCGGCGCTTTTTTCACAAACGCCGCTAAAGACCATGA
*
13255553 CCTTTAGCGGCGTTTTTTTAG
66 CCTTTAGCGGCCTTTTTTTAG
*
13255574 CAAACGCCGCTAAA
1 AAAACGCCGCTAAA
13255588 AATAATGATC
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
85 8 0.09
86 83 0.91
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (86 bp):
AAAACGCCGCTAAAGACCGTGACCTTTAGCGGCGCTTTTTTCACAAACGCCGCTAAAGACCATGA
CCTTTAGCGGCCTTTTTTTAG
Found at i:13255651 original size:21 final size:19
Alignment explanation
Indices: 13255604--13255662 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 19
13255594 GATCTTAAAA
13255604 AAATAT-TTTATTTTAATT
1 AAATATATTTATTTTAATT
*
13255622 AAATAATATTTATTTCTATGTT
1 AAAT-ATATTTATTT-TA-ATT
13255644 AAATATA-TTATGTTTAATT
1 AAATATATTTAT-TTTAATT
13255663 TTTGAAACTT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
18 4 0.12
19 4 0.12
20 13 0.38
21 7 0.21
22 6 0.18
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (19 bp):
AAATATATTTATTTTAATT
Found at i:13261568 original size:26 final size:26
Alignment explanation
Indices: 13261539--13261588 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13261529 AAGAATTACA
13261539 TAAAATTTGAAATCTTGAAAATTTTT
1 TAAAATTTGAAATCTTGAAAATTTTT
* * *
13261565 TAAAATTTTAATTCTTTAAAATTT
1 TAAAATTTGAAATCTTGAAAATTT
13261589 GAAATTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (26 bp):
TAAAATTTGAAATCTTGAAAATTTTT
Found at i:13261577 original size:16 final size:16
Alignment explanation
Indices: 13261558--13261588 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13261548 AAATCTTGAA
*
13261558 AATTTTTTAAAATTTT
1 AATTCTTTAAAATTTT
13261574 AATTCTTTAAAATTT
1 AATTCTTTAAAATTT
13261589 GAAATTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTCTTTAAAATTTT
Found at i:13261767 original size:15 final size:15
Alignment explanation
Indices: 13261737--13261769 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
13261727 ATATATCTTA
13261737 AACCCTAAACCTCAT
1 AACCCTAAACCTCAT
13261752 AACCCGTAAACC-CAT
1 AACCC-TAAACCTCAT
13261767 AAC
1 AAC
13261770 TCTTAACCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.42, C:0.39, G:0.03, T:0.15
Consensus pattern (15 bp):
AACCCTAAACCTCAT
Found at i:13262335 original size:41 final size:41
Alignment explanation
Indices: 13262290--13262582 Score: 408
Period size: 41 Copynumber: 7.1 Consensus size: 41
13262280 TAGTGTTTAT
13262290 GACTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCC
1 GACTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCC
* *
13262331 GACTTTTAGTGGCGTTTTACAAAAAGCGCCGCGAATGCTCC
1 GACTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCC
** *
13262372 GGTTTTTAGCGGCGTTTTACAAAAAGCGCTGCTAATGCTCC
1 GACTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCC
* * *
13262413 G-GTTAATAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCT
1 GACTT-TTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCC
** * *
13262454 GGTTTTTAGCGGTGTTTTACAAAAAGCGCCGCTAATGCTCT
1 GACTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCC
* *
13262495 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
1 GACTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCC
* * *
13262536 GTCTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
1 GACTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCC
*
13262577 GTCTTT
1 GACTTT
13262583 AGACCAAAAA
Statistics
Matches: 229, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 2 0.01
41 225 0.98
42 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (41 bp):
GACTTTTAGCGGCGTTTTACAAAAAGCGCCGCTAATGCTCC
Found at i:13262790 original size:19 final size:19
Alignment explanation
Indices: 13262756--13262803 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
13262746 AAATAAAAAC
*
13262756 AAGAAAA-AACAGGAACCA
1 AAGAAAATAAAAGGAACCA
*
13262774 AATAAAATAAAAGGAACCA
1 AAGAAAATAAAAGGAACCA
13262793 AAGAAAATAAA
1 AAGAAAATAAA
13262804 TCAGGAGGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.71, C:0.10, G:0.12, T:0.06
Consensus pattern (19 bp):
AAGAAAATAAAAGGAACCA
Found at i:13263351 original size:85 final size:85
Alignment explanation
Indices: 13263262--13263615 Score: 241
Period size: 85 Copynumber: 4.2 Consensus size: 85
13263252 TCCCACACAT
* * * * *
13263262 CCAAGCACCAAGG-TGCCAATGCTG-CTCGAGGGTCCCGTACATCTGAGGCACCAAGGTGCCAAT
1 CCAAGCACCAAGGTTGCCAATGCTGTCT-GAGGCTACCGCACATC-CAAGCACCAAGGTGCCAAT
*
13263325 GGTGCCCGAGGCTCTTGCACGA
64 GGTGCCCGAGGCTCTCGCACGA
** * * * *
13263347 CCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTACCGCACATCCAAGCACCAAGGTGCCGATGG
1 CCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACATCCAAGCACCAAGGTGCCAATGG
13263412 TGCCCGAGGCTCTCGCACGA
66 TGCCCGAGGCTCTCGCACGA
* * * * * * * * * ** * * *
13263432 CGAAG-GCCTAGGTTACCGATGGTGCCTGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTACCGAT
1 CCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCAC-ATCCAAGCACCAAGG-TGCCAAT
* *
13263495 GGTGCCCGAGGCTCCCACACGA
64 GGTGCCCGAGGCTCTCGCACGA
** * * * * ** * * * *
13263517 CCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACATCTAACCACCAAGGTGCCGATGG
1 CCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACATCCAAGCACCAAGGTGCCAATGG
*
13263582 TGCCCGAGGCTCCCGCA-GAA
66 TGCCCGAGGCTCTCGCACG-A
* *
13263602 CCAAGGACCTAGGT
1 CCAAGCACCAAGGT
13263616 GCCGGTGGTC
Statistics
Matches: 226, Mismatches: 36, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
84 42 0.19
85 121 0.54
86 61 0.27
87 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.31, T:0.16
Consensus pattern (85 bp):
CCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACATCCAAGCACCAAGGTGCCAATGG
TGCCCGAGGCTCTCGCACGA
Found at i:13263371 original size:43 final size:43
Alignment explanation
Indices: 13263318--13264772 Score: 1198
Period size: 43 Copynumber: 34.2 Consensus size: 43
13263308 GGCACCAAGG
* **
13263318 TGCCAATGGTGCCCGAGGCTCTTGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** *
13263361 TGCCGATGGTGTCTGAGGCTACCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
13263403 TGCCGATGGTGCCCGAGGCTCTCGCACGACGAA-GGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
13263445 TACCGATGGTGCCTGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
13263488 TACCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *** *
13263531 TACCGATGGTGTCCAAGGCTCCCGCAC-ATCTAACCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
*
13263573 TGCCGATGGTGCCCGAGGCTCCCGCA-GAACCAAGGACCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACG-ACCAAGGGCCTAGGT
* ** **
13263615 TGCCGGTGGT-CCTAAGGCTTTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
13263657 TGTCC-ATGGTGCCCGAGGCTCCCGTACGACC-AGAGGCCTAGGT
1 TG-CCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGT
* * *
13263700 TGCCGATGGTGCCCAAGGCCCCCGCACGACCAAGGGCCTATGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
13263743 TGCCGATGGTGCCCGAGGCTCCCGTAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
13263785 TGCCGATGGTACCCGAGGCTCCCGTATGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
13263828 TGCCGATGGTACTCGAGGCTCCTGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * ** *
13263871 TGCAGATAGTGCCCGAAGCTCCCGTAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * * ** *
13263913 TACCGATAGTGCCCGAGGCTCCTGTAC-ATTCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
13263955 TGCCAATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
13263997 TGTCGATGGTGCCCGAGACTCCCGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
13264040 TGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
13264082 TACCGATGGTGCCCGAGGCTCCCGCATGACC-AGGGTCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT
* * * * *
13264125 TGTCAATGGTGCCCAAGGCTCCCGCAGGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** * * *
13264168 TGCCAATGGTGCTCGAGGCTATCGTACAACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
13264211 TACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCTTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
13264253 TGCTGATGGTGCCTGAGGCACCCGTACGACCAATGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
13264296 TGCCGATTGT-CCCGAGGCTCTCGCACGACCAAGGGCCAAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
13264338 TACCGATGGTACCCGAGGCTCCCACACGACC-AGGGTCCCAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT
* *
13264381 TGCCGATGGTACCCGAGGCTCCCAG-ACGACCAAGTGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCC-GCACGACCAAGGGCCTAGGT
** *
13264424 TGCCGATGGTGGTCGAGGCTCCCGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
13264467 TGCTGATGG-GGCCGAGGCTCTCC-CAC-ATCCAAGAACCAAGG-
1 TGCCGATGGTGCCCGAGGCTC-CCGCACGA-CCAAGGGCCTAGGT
* * ** *
13264508 TGCCGGTGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACC-AGGG
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
*** * * * *
13264550 TGTTAATGGTGCCCGAGGCTCCCACACAACCAATGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** * *
13264593 TACCGATAGTGTCCGAGGCTCCCGCAC-ATCTGAGGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGT
* * * ** *
13264636 TGCCGATGTTGCTCGAGGCTCCCGCAC-ATCCGA-GGTATCAAGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT-AGGT
* * * ** *
13264679 TGCCGATGCTGCTCGAGGCTCCCGCAC-ATCCGAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * * * *
13264721 TGCCGATGCTGCTCGAAGCTCTCGCACTACCAACGTCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
*
13264764 TACCGATGG
1 TGCCGATGG
13264773 CGTCCAAGGC
Statistics
Matches: 1149, Mismatches: 220, Indels: 86
0.79 0.15 0.06
Matches are distributed among these distances:
41 42 0.04
42 476 0.41
43 619 0.54
44 12 0.01
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:13263528 original size:170 final size:170
Alignment explanation
Indices: 13263323--13264582 Score: 1137
Period size: 170 Copynumber: 7.4 Consensus size: 170
13263313 CAAGGTGCCA
** * * *
13263323 ATGGTGCCCGAGGCTCTTGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTACCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * *
13263388 -ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACGAAGGCCTAGGTTACCGAT
66 GA-CCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGCCTAGGTTGCCGAT
* *
13263452 GGTGCCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCG
130 GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCG
* * * *
13263493 ATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * *
13263558 -ATCTAACCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCA-GAACCAAGGACCTAGG-TGCCG
66 GA-CCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGTACG-ACCAAGG-CCTAGGTTGCCG
* ** ** *
13263620 GTGGT-CCTAAGGCTTTCGCACGACCAAGGGCCTAGGTTGTCC-
128 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT-ACCG
* * *
13263662 ATGGTGCCCGAGGCTCCCGTACGACC-AGAGGCCTAGGTTGCCGATGGTGCCCAAGGCCCCCGCA
1 ATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
* * * * *
13263726 CGACCAAGGGCCTATGTTGCCGATGGTGCCCGAGGCTCCCGTAC-ATCCAAGCACCAAGG-TGCC
65 CGACCAAGCGCC-AAGGTGCCGATGGTGCCCGAGGCTCCCGTACGA-CCAAG-GCCTAGGTTGCC
* * * *
13263789 GATGGTACCCGAGGCTCCCGTATGACCAAGGGCCTAGGTTGCCG
127 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCG
* * * * * * * *
13263833 ATGGTACTCGAGGCTCCTGCACGACCAGGGGCCTAGGTTGCAGATAGTGCCCGAAGCTCCCGTAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * * * * *
13263898 -ATCCAAGCACCAAGGTACCGATAGTGCCCGAGGCTCCTGTAC-ATTCAAGCACCAAGG-TGCCA
66 GA-CCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGTACGA-CCAAG-GCCTAGGTTGCCG
*
13263960 ATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTGT--CG
128 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT-TACCG
* * *
13264002 ATGGTGCCCGAGACTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGT-CCCGAGGCTCTCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * * * * *
13264066 GACCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCATGACCAGGGTCCTAGGTTGTCAA
66 GACCAAGCGCCAAGG-TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGG-CCTAGGTTGCCGA
* * * * *
13264131 TGGTGCCCAAGGCTCCCGCAGGACCAGGGGCCTAGGTTGCCA
129 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCG
* ** * * * *
13264173 ATGGTGCTCGAGGCTATCGTACAACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * ** * * *
13264238 GACCAGGGGCTTAGGTGCTGATGGTGCCTGAGGCACCCGTACGACCAATGGCCTAGGTTGCCGAT
66 GACCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGTACGACCAA-GGCCTAGGTTGCCGAT
* * *
13264303 TGT-CCCGAGGCTCTCGCACGACCAAGGGCCAAGGTTACCG
130 GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCG
* * * *
13264343 ATGGTACCCGAGGCTCCCACACGACC-AGGGTCCCAGGTTGCCGATGGTACCCGAGGCTCCCAG-
1 ATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCC-GC
* * ** *
13264406 ACGACCAAGTGCCTAGGTTGCCGATGGTGGTCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCT
64 ACGACCAAGCGCCAAGG-TGCCGATGGTGCCCGAGGCTCCCGTACGACCAA-GGCCTAGGTTGCC
* ** * *
13264471 GATGG-GGCCGAGGCTCTCC-CAC-ATCCAAGAACCAAGG-TGCCG
127 GATGGTGCCCGAGGCTC-CCGCACGA-CCAAGGGCCTAGGTTACCG
* * ** * *** *
13264513 GTGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACC-AGGGTGTTAATGGTGCCCGAGGCTCCCACA
1 ATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
*
13264576 CAACCAA
65 CGACCAA
13264583 TGGCCTAGTT
Statistics
Matches: 901, Mismatches: 157, Indels: 65
0.80 0.14 0.06
Matches are distributed among these distances:
168 25 0.03
169 201 0.22
170 398 0.44
171 245 0.27
172 32 0.04
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (170 bp):
ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
GACCAAGCGCCAAGGTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGCCTAGGTTGCCGATG
GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCG
Found at i:13264770 original size:85 final size:83
Alignment explanation
Indices: 13264516--13264771 Score: 246
Period size: 85 Copynumber: 3.0 Consensus size: 83
13264506 GGTGCCGGTG
* * *** * * *
13264516 GTGCTCGAGGCTCCCGCACATCCAAGCACCAGGGTGTTAATGGTGCCCGAGGCTCCCACACAACC
1 GTGCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCAC-ACC
* * *
13264581 AATGGCCTAGTTTACCGAT
65 AACGTCCTAGGTTACCGAT
* *
13264600 AGTG-TCCGAGGCTCCCGCACATCTGAGGCACCAAGGTGCCGATGTTGCTCGAGGCTCCCGCACA
1 -GTGCT-CGAGGCTCCCGCACATCCGA-GCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACA
* * * * *
13264664 TCCGAGGT-ATCAAGTTGCCGAT
63 -CCAACGTCCT-AGGTTACCGAT
* *
13264686 GCTGCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGCTGCTCGAAGCTCTCGCACTAC
1 G-TGCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCAC-AC
13264751 CAACGTCCTAGGTTACCGAT
64 CAACGTCCTAGGTTACCGAT
13264771 G
1 G
13264772 GCGTCCAAGG
Statistics
Matches: 138, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
84 1 0.01
85 72 0.52
86 64 0.46
87 1 0.01
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.19
Consensus pattern (83 bp):
GTGCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACACCA
ACGTCCTAGGTTACCGAT
Found at i:13264989 original size:24 final size:24
Alignment explanation
Indices: 13264962--13265023 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
13264952 TGGCTCACCA
*
13264962 GAGCACCGCCGGGATGGCTTGCAG
1 GAGCACCGCCGGGATGGCTCGCAG
* * *
13264986 GAGCACAGTCGGGATGGCTCGCCG
1 GAGCACCGCCGGGATGGCTCGCAG
*
13265010 GAGCACCACCGGGA
1 GAGCACCGCCGGGA
13265024 ACTTAACCGG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.19, C:0.31, G:0.40, T:0.10
Consensus pattern (24 bp):
GAGCACCGCCGGGATGGCTCGCAG
Found at i:13276222 original size:58 final size:59
Alignment explanation
Indices: 13276122--13276243 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 59
13276112 GGGAGGGACA
* * * **
13276122 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATTTGAATTCTACC-TTT
1 GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
* *
13276180 GGGATGATTCATTCATTATTGGGTACCGAACATGTAATGGTATCCGAATTCTACCTTTT
1 GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
13276239 GGGAT
1 GGGAT
13276244 TGGGGAGGGA
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
58 48 0.86
59 8 0.14
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (59 bp):
GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
Found at i:13288418 original size:24 final size:23
Alignment explanation
Indices: 13288391--13288435 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
13288381 CCGGCGGTGC
*
13288391 TCCGATGATCCATCCCAGGGATGA
1 TCCGACGATCCATCCC-GGGATGA
* *
13288415 TCCGGCGATCTATCCCGGGAT
1 TCCGACGATCCATCCCGGGAT
13288436 ATACAAAACG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 5 0.28
24 13 0.72
ACGTcount: A:0.20, C:0.31, G:0.27, T:0.22
Consensus pattern (23 bp):
TCCGACGATCCATCCCGGGATGA
Found at i:13288567 original size:58 final size:58
Alignment explanation
Indices: 13288472--13288587 Score: 196
Period size: 58 Copynumber: 2.0 Consensus size: 58
13288462 CCCAATCCCA
* *
13288472 AAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCGTCTC
1 AAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCGTCTC
* *
13288530 AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCGTCTC
1 AAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCGTCTC
13288588 TGTCCCTCCC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (58 bp):
AAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCGTCTC
Found at i:13294450 original size:85 final size:85
Alignment explanation
Indices: 13294216--13295100 Score: 927
Period size: 85 Copynumber: 10.4 Consensus size: 85
13294206 GACGTCAGTG
* * * * * *
13294216 GTGCGAGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCCTTGGAT-ATGCAGGAGCCTCGGACACC
1 GTGCGGGAGCCTCG-GCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGACACC
* *
13294279 ATCAGCAACCTAGGCTCTTGGTC
63 ATCGGCAACCTAGGCCCTTGGTC
** * *
13294302 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCATTTGGTCGTGCGGGAGCCTTGGGCACCAT
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
*
13294367 TGGCAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
** * *
13294388 GTGCAAGAGCCTCGGCACCATCGACAACCTATGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
**
13294453 GAAAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* *
13294473 GTACGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCTTGGTCGTGCAGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
* *
13294536 CAGTAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * *
13294557 GTACAGGAGCCTCGTGCACCATCGG-TACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGACACCAT
1 GTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
* *
13294621 CGGCACCCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * * *
13294642 GTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTAGTCGTGCTGGAGCCTCAGACACCAT
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
* *
13294707 CGGTAACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * *
13294728 ATGTGGGAGCCTCGGGACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
* **
13294792 GGC-ACCTTGGTGCTTGGAT-
66 GGCAACCTAGGCCCTTGG-TC
* * * *
13294811 GTGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCTT
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
* **
13294876 CGGC-ACCTTGGTGCTTGGAT-
65 CGGCAACCTAGGCCCTTGG-TC
* **
13294896 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGTACCAT
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
*
13294961 CGGTAACCTAGGCCCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * * * *
13294982 GTGCGGGAGCCTCGGGCGCCATCGGC-ACCTTGGTGCCTCGGAT-GTGTGGGAGCCTC-GAGCAG
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGA-CAC
* * **
13295044 CATTGGC-ACCTTGGTGCTTGGAT-
62 CATCGGCAACCTAGGCCCTTGG-TC
*
13295067 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGG
13295101 ACGTTGGATG
Statistics
Matches: 683, Mismatches: 95, Indels: 42
0.83 0.12 0.05
Matches are distributed among these distances:
83 24 0.04
84 123 0.18
85 314 0.46
86 212 0.31
87 10 0.01
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:13295006 original size:297 final size:294
Alignment explanation
Indices: 13294262--13295100 Score: 1011
Period size: 297 Copynumber: 2.8 Consensus size: 294
13294252 CTTGGATATG
* * * *
13294262 CAGGAGCCTCGGACACCATCAGCAACCTAGGCTCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
1 CAGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGG
** * *
13294327 CAACCTAGGCATTTGGTCGTGCGGGAGCCTTGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGC
65 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
* * * * * **
13294392 AAGAGCCTCGGCACCATCGACAACCTATGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGAAA
130 AGGAGCCTCGGCACCATCG-GAACCTAGGCCCCTGGTCGTGTGGGAGCCTCGG-CACCATCG-GC
*
13294457 ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCACCTAGGCCTTGGTCGTGCAGGA
192 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCTTGGTCGTGCAGGA
*
13294522 GCCTCGGACACCATCAGTAACCTAGGCCCTTGGTCGTA
257 GCCTCGGACACCATCAGTAACCTAGGCCCCTGGTCGTA
* * *
13294560 CAGGAGCCTCGTGCACCATCGGTACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGACACCATCGGC
1 CAGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC
* * * * * * *
13294625 ACCCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTAGTCGTGCT
66 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCA
* * *
13294690 GGAGCCTCAGACACCATCGGTAACCTAGGCCCCTGGTCATGTGGGAGCCTCGGGACCATCGGCAC
131 GGAGCCTC-GGCACCATCGG-AACCTAGGCCCCTGGTCGTGTGGGAGCCTCGGCACCATCGGCAC
* * *
13294755 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGA
194 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCTTGG-TCGTGCAGGA
* *
13294819 GCCTCGGACACCATCGGTAACCTAGGCCCCTGGTCGTG
257 GCCTCGGACACCATCAGTAACCTAGGCCCCTGGTCGTA
* * * **
13294857 CGGGAGCCTCGGGCACCTTCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGG
1 CAGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG
* * *
13294921 CAACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGTACCATCGGTAACCTAGGCCCTTGGTCGTGC
65 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
* * * * ** * *
13294986 GGGAGCCTCGGGCGCCATCGGCACCTTGGTGCCTCGGAT-GTGTGGGAGCCTCGAGCAGCATTGG
130 AGGAGCCTC-GGCACCATCGGAACCTAGGCCCCT-GG-TCGTGTGGGAGCCTCG-GCACCATCGG
* ** * *
13295050 CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
191 CACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG
13295101 ACGTTGGATG
Statistics
Matches: 461, Mismatches: 70, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
296 56 0.12
297 296 0.64
298 102 0.22
299 7 0.02
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (294 bp):
CAGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC
AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCA
GGAGCCTCGGCACCATCGGAACCTAGGCCCCTGGTCGTGTGGGAGCCTCGGCACCATCGGCACCT
AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCTTGGTCGTGCAGGAGCCT
CGGACACCATCAGTAACCTAGGCCCCTGGTCGTA
Found at i:13295113 original size:43 final size:43
Alignment explanation
Indices: 13294264--13295100 Score: 941
Period size: 43 Copynumber: 19.7 Consensus size: 43
13294254 TGGATATGCA
* *
13294264 GGAGCCTCGGACACCATCAGCAACCTAGGCTCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* **
13294307 GGAGCCTCGGGCACCATCGGCAACCTAGGCATTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
13294350 GGAGCCTTGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
13294393 AGAGCCTCGG-CACCATCGACAACCTATGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
** *
13294435 GGAGCCTCGGACACCATCGAAAACCTAGGCCCTTGGTCGTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
13294478 GGAGCCTCGGGCACCATCGGC-ACCTAGG-CCTTGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
13294519 GGAGCCTCGGACACCATCAGTAACCTAGGCCCTTGGTCGTACA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
13294562 GGAGCCTCGTG-CACCATCGG-TACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCG-GACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
13294604 GGAGCCTCAGACACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
13294647 GGAGCCTCGGACACCATCGGCACCCTAGGCCCCTAGTCGTGCT
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
13294690 GGAGCCTCAGACACCATCGGTAACCTAGGCCCCTGGTCATGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
13294733 GGAGCCTCGG-GACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
13294774 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
13294816 GGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * **
13294859 GGAGCCTCGGGCACCTTCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
*
13294901 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
** *
13294944 GGAGCCTCGGGTACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * *
13294987 GGAGCCTCGGGCGCCATCGGC-ACCTTGGTGCCTCGGAT-GTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
* * * **
13295030 GGAGCCTC-GAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
*
13295072 GGAGCCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
13295101 ACGTTGGATG
Statistics
Matches: 679, Mismatches: 97, Indels: 36
0.84 0.12 0.04
Matches are distributed among these distances:
41 58 0.09
42 208 0.31
43 411 0.61
44 2 0.00
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:13296569 original size:46 final size:45
Alignment explanation
Indices: 13296407--13296579 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
13296397 ATTTGGGCAT
* *
13296407 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGC
* * * *
13296453 CTGAA--CGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC---GC
13296496 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGC
*
13296544 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13296580 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
40 2 0.02
41 4 0.04
43 3 0.03
44 21 0.20
45 4 0.04
46 39 0.37
47 21 0.20
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGC
Found at i:13309166 original size:28 final size:28
Alignment explanation
Indices: 13309105--13309202 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
13309095 TCACAAATTG
** * *
13309105 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
13309134 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
13309162 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
13309190 GCACTAAGTGTGC
1 GCACTAAGTGTGC
13309203 GGGCTTATGG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:13313760 original size:58 final size:57
Alignment explanation
Indices: 13313675--13313784 Score: 193
Period size: 58 Copynumber: 1.9 Consensus size: 57
13313665 CCAATCCCAA
*
13313675 AAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCGTCCC
1 AAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAATCGTCCC
*
13313732 AAGGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATC
1 AAGG-TAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAATC
13313785 ATCCTTGTCC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
57 4 0.08
58 46 0.92
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (57 bp):
AAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAATCGTCCC
Found at i:13314079 original size:14 final size:13
Alignment explanation
Indices: 13314055--13314088 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
13314045 GACACGTGAA
13314055 TGTCGCCTGGTAG
1 TGTCGCCTGGTAG
*
13314068 TGGTCGCTTGGTAG
1 T-GTCGCCTGGTAG
13314082 TGTCGCC
1 TGTCGCC
13314089 GGCCTGGTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.06, C:0.24, G:0.38, T:0.32
Consensus pattern (13 bp):
TGTCGCCTGGTAG
Found at i:13328723 original size:24 final size:24
Alignment explanation
Indices: 13328648--13328725 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
13328638 CGGGTTAGGT
** *
13328648 TCCCGGCGGTGCTCTGACGATCCA
1 TCCCGGCGGTGCTCTGGTGAGCCA
* * * **
13328672 TTCCGGCGGTGGTCCGGTGAGCTT
1 TCCCGGCGGTGCTCTGGTGAGCCA
13328696 TCCCGGCGGTGCTCTGGTGAGCCA
1 TCCCGGCGGTGCTCTGGTGAGCCA
13328720 TCCCGG
1 TCCCGG
13328726 AATATAGAAA
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.08, C:0.33, G:0.36, T:0.23
Consensus pattern (24 bp):
TCCCGGCGGTGCTCTGGTGAGCCA
Found at i:13329034 original size:43 final size:43
Alignment explanation
Indices: 13329003--13329924 Score: 1068
Period size: 43 Copynumber: 21.6 Consensus size: 43
13328993 ATATGCAGGT
* * * *
13329003 GCCTCGGACACCATCGGAAACCTAGGTCCTTGGTCGTACGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
13329046 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
13329089 GCCTC-GGCACCATTGGCAACCTATGCCCTTGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
13329131 GCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
13329174 GCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * *
13329216 GCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTGTGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * *
13329259 CCCTCGGACACCATCGGCACCCTAGG-CCTCTGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGA
* * ***
13329302 GCCTCAGGCACCATCGGCATCCTAGGCCCTTGGTCGTATAGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
13329345 GCCTCGGGCACCATCGGCAACTTAGGCCCTTGGTCGTACGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * *
13329388 GCCTCAGACACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
13329431 GCCTCGGG-ACCATCGGCAACCTAGGACCC-AGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGA
*
13329473 GCCTCGGGCACCATCGGCAACTTAGGCACC-TGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGGA
* * * * *
13329516 GCCTCGGGCACCATCGGTACCCTAGGCCCCTGGTAGTGCGAGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * *
13329559 GCCTCGGGCACCATCGGCACCCTAGGCGCTTGGTCGTGCGAGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * **
13329602 GCCTCGGG-ACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * * *
13329643 GCCTCGGACACCATCGGTAAGCTAGGCCCCTGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
13329686 GCCTCGGGCACCATCGG-TACCTTAGTG--CTTGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGA
* * *
13329728 GCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCTGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
*
13329771 GCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * *
13329814 GCCTTGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGA
* * * * **
13329857 GCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGA
1 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
13329899 GCCTCGGACACTATAGGCAACCTAGG
1 GCCTCGGGCACCATCGGCAACCTAGG
13329925 ACGTTGGATG
Statistics
Matches: 760, Mismatches: 97, Indels: 44
0.84 0.11 0.05
Matches are distributed among these distances:
41 26 0.03
42 204 0.27
43 525 0.69
44 5 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
Found at i:13329132 original size:85 final size:85
Alignment explanation
Indices: 13329003--13329924 Score: 1037
Period size: 85 Copynumber: 10.8 Consensus size: 85
13328993 ATATGCAGGT
* * * *
13329003 GCCTCGGACACCATCGGAAACCTAGGTCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACC
1 GCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
*
13329068 TAGGCCCTTGGTCGTGCGAGA
65 TAGGCCCTTGGTCGTGCGGGA
* *
13329089 GCCTCGGCACCATTGGCAACCTATGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCT
1 GCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCT
*
13329154 AGGCCCTTGGTCGTACGGGA
66 AGGCCCTTGGTCGTGCGGGA
*
13329174 GCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCC
1 GCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* *
13329238 TAGGCCCCTGGTCGTGTGGGA
65 TAGGCCCTTGGTCGTGCGGGA
* * *
13329259 CCCTCGGACACCATCGGCACCCTAGG-CCTCTGGTCGTGCGGGAGCCTCAGG-CACCATCGGCAT
1 GCCTCGG-CACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTC-GGACACCATCGGCAA
***
13329322 CCTAGGCCCTTGGTCGTATAGGA
63 CCTAGGCCCTTGGTCGTGCGGGA
* * * *
13329345 GCCTCGGGCACCATCGGCAACTTAGGCCCTTGGTCGTACGGGAGCCTCAGACACCATCGGTAACC
1 GCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
*
13329410 TAGGCCCCTGGTCGTGCGGGA
65 TAGGCCCTTGGTCGTGCGGGA
* * * *
13329431 GCCTCGGGACCATCGGCAACCTAGGACCC-AGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACT
1 GCCTCGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
13329495 TAGGCACC-TGGTCGTGCGGGA
65 TAGGC-CCTTGGTCGTGCGGGA
* * * * * * *
13329516 GCCTCGGGCACCATCGGTACCCTAGGCCCCTGGTAGTGCGAGAGCCTCGGGCACCATCGGCACCC
1 GCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* *
13329581 TAGGCGCTTGGTCGTGCGAGA
65 TAGGCCCTTGGTCGTGCGGGA
* * * ** * *
13329602 GCCTCGGGACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGTAAGC
1 GCCTCGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
*
13329665 TAGGCCCCTGGTCGTGCGGGA
65 TAGGCCCTTGGTCGTGCGGGA
*
13329686 GCCTCGGGCACCATCGG-TACCTTAGTG--CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCA
1 GCCTC-GGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCA
* *
13329747 ACCTAGGCCCTTGGTCATGCTGGA
62 ACCTAGGCCCTTGGTCGTGCGGGA
* * *
13329771 GCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGC-ACC
1 GCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
13329835 TTGGTGCCTCGGAT-GTGCGGGA
65 TAGG-CCCTTGG-TCGTGCGGGA
* * * ** * *
13329857 GCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACTATAGGCAAC
1 GCCTCG-GCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAAC
13329920 CTAGG
64 CTAGG
13329925 ACGTTGGATG
Statistics
Matches: 717, Mismatches: 92, Indels: 54
0.83 0.11 0.06
Matches are distributed among these distances:
84 60 0.08
85 365 0.51
86 283 0.39
87 9 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (85 bp):
GCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCT
AGGCCCTTGGTCGTGCGGGA
Found at i:13329146 original size:128 final size:128
Alignment explanation
Indices: 13329003--13329924 Score: 1100
Period size: 128 Copynumber: 7.2 Consensus size: 128
13328993 ATATGCAGGT
* * *
13329003 GCCTCGGACACCATCGGAAACCTAGGTCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACC
1 GCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
13329068 TAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATTGGCAACCTATGCCCTTGGTCGTGCGGGA
66 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
13329131 GCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGC-ACC
1 GCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
13329195 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTGTGGGA
66 TAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * * *
13329259 CCCTCGGACACCATCGGCACCCTAGG-CCTCTGGTCGTGCGGGAGCCTCAGGCACCATCGGCATC
1 GCCTCGGACACCATCGGTAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
*** * *
13329323 CTAGGCCCTTGGTCGTATAGGAGCCTCGGGCACCATCGGCAACTTAGGCCCTTGGTCGTACGGGA
65 CTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* *
13329388 GCCTCAGACACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG-ACCATCGGCAACC
1 GCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
13329452 TAGGACCC-AGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTTAGGCACC-TGGTCGTGCGGG
66 TAGG-CCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGC-CCTTGGTCGTGCGGG
13329515 A
128 A
* * * * * *
13329516 GCCTCGGGCACCATCGGTACCCTAGGCCCCTGGTAGTGCGAGAGCCTCGGGCACCATCGGCACCC
1 GCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * **
13329581 TAGGCGCTTGGTCGTGCGAGAGCCTCGGGACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGA
66 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * *
13329643 GCCTCGGACACCATCGGTAAGCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGG-TACC
1 GCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* *
13329707 TTAGTG--CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCTG
66 -TAG-GCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
13329769 GA
127 GA
* *
13329771 GCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGC-ACC
1 GCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * * * **
13329835 TTGGTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGG
66 TAGG-CCCTTGG-TCGTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
13329897 GA
127 GA
* * *
13329899 GCCTCGGACACTATAGGCAACCTAGG
1 GCCTCGGACACCATCGGTAACCTAGG
13329925 ACGTTGGATG
Statistics
Matches: 691, Mismatches: 80, Indels: 46
0.85 0.10 0.06
Matches are distributed among these distances:
126 23 0.03
127 119 0.17
128 381 0.55
129 163 0.24
130 5 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (128 bp):
GCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
TAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
Found at i:13329977 original size:43 final size:43
Alignment explanation
Indices: 13329806--13329983 Score: 157
Period size: 43 Copynumber: 4.2 Consensus size: 43
13329796 GCCCTTGGTC
* * * * *
13329806 GTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * *
13329849 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * * *
13329891 GTGCGGGAGCCTCG-GACA-CTATAGGCAACCTAGG-ACGTTGGAT
1 GTGCGGGAGCCTCGAG-CAGC-ATAGGCACCCT-GGTGCCTCGGAT
* * **
13329934 GTGCCGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
13329977 GTGCGGG
1 GTGCGGG
13329984 CTAGAGAAAA
Statistics
Matches: 109, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.02
42 32 0.29
43 73 0.67
44 2 0.02
ACGTcount: A:0.15, C:0.27, G:0.39, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
Found at i:13333746 original size:28 final size:28
Alignment explanation
Indices: 13333715--13333784 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
13333705 ATATTTTCCT
*
13333715 TCGCACACTTAGTGCTCGA-TAATCAAAC
1 TCGCACACTTAGTGCTC-ATTAACCAAAC
13333743 TCGCACACTTAGTGCTCATTAACCAAAC
1 TCGCACACTTAGTGCTCATTAACCAAAC
**
13333771 TCGCATGCTTAGTG
1 TCGCACACTTAGTG
13333785 AAATTTTCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCATTAACCAAAC
Found at i:13338066 original size:26 final size:26
Alignment explanation
Indices: 13337992--13338060 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
13337982 CTGAAAAAAG
13337992 TGTCCCTGTTTCAGACATCTGAAACC
1 TGTCCCTGTTTCAGACATCTGAAACC
13338018 TGTCCCTGTTTCAGACATCTGAAACC
1 TGTCCCTGTTTCAGACATCTGAAACC
*
13338044 TGTCCTTGTTTCAGACA
1 TGTCCCTGTTTCAGACA
13338061 CATGAATGTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (26 bp):
TGTCCCTGTTTCAGACATCTGAAACC
Found at i:13338957 original size:25 final size:25
Alignment explanation
Indices: 13338923--13338973 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
13338913 CAAGTCGTCT
13338923 CGGTCCCTCCCCTTTCGAATCATCC
1 CGGTCCCTCCCCTTTCGAATCATCC
13338948 CGGTCCCTCCCCTTTCGAATCATCC
1 CGGTCCCTCCCCTTTCGAATCATCC
13338973 C
1 C
13338974 CTCCGGCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.12, C:0.49, G:0.12, T:0.27
Consensus pattern (25 bp):
CGGTCCCTCCCCTTTCGAATCATCC
Found at i:13339214 original size:85 final size:84
Alignment explanation
Indices: 13339119--13339852 Score: 640
Period size: 85 Copynumber: 8.7 Consensus size: 84
13339109 GACGTCAGTG
* * * * * *
13339119 GTGCGAGAGCCTC-GGCAGCATTGGCACCTTGGTGCCTTGGATATGCAGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCAGGCACCATCGGCACCTTGG-CCCTTGG-TGTGCGGGAGCCTCGGACACCAT
* *
13339183 CGACAACCTATGCCCTTGGTC
64 CGGCAACCTAGGCCCTTGGTC
* * * *
13339204 GTGCGGGAGCCTC-GGCCACCAACGGCAACCTAGGCCCTTGGTCGTAC-GGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCAGG-CACCATCGGC-ACCTTGGCCCTTGGT-GTGCGGGAGCCTCGGACACCA
**
13339267 TCGGCAATATAGGCCCTTGGTC
63 TCGGCAACCTAGGCCCTTGGTC
* * *
13339289 GTGCGAGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCAGGCACCATCGGC-ACCTTGGCCCTTGGT-GTGCGGGAGCCTCGGACACCAT
*
13339354 CCGCAACCTAGGCCCTTGGTC
64 CGGCAACCTAGGCCCTTGGTC
* * * * *
13339375 GTGCGGGAGCCTCAGACACCATCGGAACCTAGGCCCCTGGTCATGCGGGAG-CTCGGACACCATC
1 GTGCGGGAGCCTCAGGCACCATCGGCACCTTGGCCCTTGGT-GTGCGGGAGCCTCGGACACCATC
13339439 GGCAACCTAGG-CCTCTGGTC
65 GGCAACCTAGGCCCT-TGGTC
* * * * * *
13339459 GTGTGGGAGCCTC-GGGACCATCGACAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGCACCGT
1 GTGCGGGAGCCTCAGGCACCATCGGC-ACCTTGGCCCTTGGT-GTGCGGGAGCCTCGGACACCAT
* *
13339522 CGGCAACCTAAGCCCCTGGTC
64 CGGCAACCTAGGCCCTTGGTC
* * * * *
13339543 GTGCAGGAGCCTCGGGCACCATCGACACCTAGGCCC-TGGTTGTGC-GGAGCCTCGG-GACCATC
1 GTGCGGGAGCCTCAGGCACCATCGGCACCTTGGCCCTTGG-TGTGCGGGAGCCTCGGACACCATC
*
13339605 GGC-ACCTAGGCCC-TCGTC
65 GGCAACCTAGGCCCTTGGTC
* * ** *
13339623 GTGCGGGAGCCTCGGGCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCTGGGACACCATC
1 GTGCGGGAGCCTCAGGCACCATCGGCACCTTGGCCCTTGG-TGTGCGGGAGCCTCGGACACCATC
* *
13339688 GGTAACCTA-GCCCCTGGTC
65 GGCAACCTAGGCCCTTGGTC
* * * * * * *
13339707 GTACCGGAGCCTCTGGCACCATCGGTAACCTAGGCCCTTGGTCGTTCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCAGGCACCATCGG-CACCTTGGCCCTTGGT-GTGCGGGAGCCTCGGACACCAT
* * * *
13339772 CGAC-ACCTTGGTGCCTCGGAT-
64 CGGCAACCTAGG-CCCTTGG-TC
* * * *
13339793 GTGCGGGAGCCTC-GTGTAGCATTGGCACCTTGG--TTTGGATGTGCGGGAGCCTCGGACACC
1 GTGCGGGAGCCTCAG-GCACCATCGGCACCTTGGCCCTTGG-TGTGCGGGAGCCTCGGACACC
13339853 GTATAGCAAC
Statistics
Matches: 544, Mismatches: 82, Indels: 48
0.81 0.12 0.07
Matches are distributed among these distances:
80 34 0.06
81 17 0.03
82 17 0.03
83 68 0.12
84 141 0.26
85 165 0.30
86 95 0.17
87 7 0.01
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.18
Consensus pattern (84 bp):
GTGCGGGAGCCTCAGGCACCATCGGCACCTTGGCCCTTGGTGTGCGGGAGCCTCGGACACCATCG
GCAACCTAGGCCCTTGGTC
Found at i:13339272 original size:42 final size:43
Alignment explanation
Indices: 13339166--13339773 Score: 735
Period size: 43 Copynumber: 14.4 Consensus size: 43
13339156 TGGATATGCA
* * *
13339166 GGAGCCTCGGACACCATCGACAACCTATGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
13339209 GGAGCCTCGGCCACCAACGGCAACCTAGGCCCTTGGTCGTAC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
**
13339251 GGAGCCTCGGGCACCATCGGCAATATAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
13339294 AGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
13339337 AGAGCCTCGGACACCATCCGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
13339380 GGAGCCTCAGACACCATCGG-AACCTAGGCCCCTGGTCATGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
13339422 GGAG-CTCGGACACCATCGGCAACCTAGG-CCTCTGGTCGTGTG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCG
*
13339464 GGAGCCTCGGG-ACCATCGACAACCTAGGCCC-TGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
13339505 GGAGCCTCGGGCACCGTCGGCAACCTAAGCCCCTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
13339548 GGAGCCTCGGGCACCATCGAC-ACCTAGGCCC-TGGTTGTGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
13339588 GGAGCCTCGGG-ACCATCGGC-ACCTAGGCCC-TCGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
13339628 GGAGCCTCGGGCACCATCGG-TACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * *
13339670 GGAGCCT-GGGACACCATCGGTAACCTA-GCCCCTGGTCGTACC
1 GGAGCCTCGGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
13339712 GGAGCCTCTGGCACCATCGGTAACCTAGGCCCTTGGTCGTTCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
13339755 GGAGCCTCGGGCACCATCG
1 GGAGCCTCGGGCACCATCG
13339774 ACACCTTGGT
Statistics
Matches: 492, Mismatches: 56, Indels: 34
0.85 0.10 0.06
Matches are distributed among these distances:
39 25 0.05
40 22 0.04
41 63 0.13
42 177 0.36
43 205 0.42
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (43 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:13339467 original size:84 final size:84
Alignment explanation
Indices: 13339166--13339773 Score: 714
Period size: 84 Copynumber: 7.2 Consensus size: 84
13339156 TGGATATGCA
* * * *
13339166 GGAGCCTCGGACACCATCGACAACCTATGCCCTTGGTCGTGCGGGAGCCTCGGCCACCAACGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGCACCATCGG-A
*
13339231 ACCTAGGCCCTTGGTCGTAC-
64 ACCTAGGCCCTTGGTCGTGCG
* ** * *
13339251 GGAGCCTCGGGCACCATCGGCAATATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGCACCATCGG-A
13339316 ACCTAGGCCCTTGGTCGTGCG
64 ACCTAGGCCCTTGGTCGTGCG
* * * *
13339337 AGAGCCTCGGACACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGACACCATCGGAA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGCACCATCGGAA
* *
13339402 CCTAGGCCCCTGGTCATGCG
65 CCTAGGCCCTTGGTCGTGCG
* *
13339422 GGAG-CTCGGACACCATCGGCAACCTAGGCCTCTGGTCGTGTGGGAGCCTCGGG-ACCATCGACA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCC-CTGGTCGTGCGGGAGCCTCGGGCACCATCG-GA
13339485 ACCTAGGCCC-TGGTCGTGCG
64 ACCTAGGCCCTTGGTCGTGCG
* * * *
13339505 GGAGCCTCGGGCACCGTCGGCAACCTAAGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATC-GAC
1 GGAGCCTCGGACACCATCGGCAACCT-AGGCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGA-
*
13339569 ACCTAGGCCC-TGGTTGTGC-
64 ACCTAGGCCCTTGGTCGTGCG
* * *
13339588 GGAGCCTCGG-GACCATCGGC-ACCTAGGCCCTCGTCGTGCGGGAGCCTCGGGCACCATCGGTAC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGAAC
* **
13339651 CTTGGTGCTTGGAT-GTGCG
66 CTAGGCCCTTGG-TCGTGCG
* * * * * *
13339670 GGAGCCTGGGACACCATCGGTAACCTAGCCCCTGGTCGTACCGGAGCCTCTGGCACCATCGGTAA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AA
*
13339735 CCTAGGCCCTTGGTCGTTCG
65 CCTAGGCCCTTGGTCGTGCG
*
13339755 GGAGCCTCGGGCACCATCG
1 GGAGCCTCGGACACCATCG
13339774 ACACCTTGGT
Statistics
Matches: 451, Mismatches: 57, Indels: 30
0.84 0.11 0.06
Matches are distributed among these distances:
80 38 0.08
81 12 0.03
82 18 0.04
83 39 0.09
84 147 0.33
85 141 0.31
86 56 0.12
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (84 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGAAC
CTAGGCCCTTGGTCGTGCG
Found at i:13344702 original size:58 final size:59
Alignment explanation
Indices: 13344611--13344731 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
13344601 TCCTCTCCAA
* *
13344611 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCAGTACCCAATAATGAATGAACCG
* *
13344670 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCAGTACCCAATAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCAGTACCCAATAATGAATGAACCG
13344728 TCCC
1 TCCC
13344732 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCAGTACCCAATAATGAATGAACCG
Found at i:13345267 original size:25 final size:25
Alignment explanation
Indices: 13345233--13345281 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
13345223 TGCTACAAGT
13345233 CATCCCGGTCCCTCCCCTTTCGGAC
1 CATCCCGGTCCCTCCCCTTTCGGAC
13345258 CATCCCGGTCCCTCCCCTTTCGGA
1 CATCCCGGTCCCTCCCCTTTCGGA
13345282 GCAAGAGCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.08, C:0.51, G:0.16, T:0.24
Consensus pattern (25 bp):
CATCCCGGTCCCTCCCCTTTCGGAC
Found at i:13345680 original size:42 final size:42
Alignment explanation
Indices: 13345483--13346233 Score: 770
Period size: 43 Copynumber: 17.6 Consensus size: 42
13345473 TGGATATGCA
* * *
13345483 GGAGCCTCGGACACCATCGGCAACCTAGGCTCTTGGTCGTGCA
1 GGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
13345526 GGAGCCTCGGCCACCATCGACAACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
13345569 GGAGCCTCGGCCACTATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
13345612 GGAGCCTCAGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
13345655 AGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
**
13345697 GGAGCCTCAAACACCATCGG-AACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
13345739 GGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCG
*
13345781 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGATCGTGCG
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
** * * *
13345824 AAAGCCTCGGGTACCATCGGCACCCT-TGCCCCTTGGTCGTGCG
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCC-TGGTCGTGCG
* * * * *
13345867 AGAGCCTCGGGACCATCAGC-ACCTAGGCTCTTGGTCGTGCG
1 GGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* ** *
13345908 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCG
* * *
13345950 GGAGCTTGGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * * ** *
13345993 AGAGCCTCGGGCACCATCGGC-ACTTTGGTACTTGGAT-GTGCG
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCG
* *
13346035 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCC
1 GGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* * *
13346078 GGAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
* **
13346121 GGAGCCTCGGACACCATCGGC-ACCTTGGTGCCTCGGAT-GTGCG
1 GGAGCCTCGG-CACCATCGGCAACCTAGGCCCCT-GG-TCGTGCG
* * * ** *
13346164 GGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCG-GCACCATCGGCAACCTAGGCCCCTGG-TCGTGCG
*
13346206 GGAGCCTCGGACACCATAGGCAACCTAG
1 GGAGCCTCGG-CACCATCGGCAACCTAG
13346234 TGTCATGAGT
Statistics
Matches: 610, Mismatches: 73, Indels: 50
0.83 0.10 0.07
Matches are distributed among these distances:
41 37 0.06
42 220 0.36
43 343 0.56
44 10 0.02
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (42 bp):
GGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCG
Found at i:13345712 original size:85 final size:86
Alignment explanation
Indices: 13345484--13346233 Score: 814
Period size: 85 Copynumber: 8.8 Consensus size: 86
13345474 GGATATGCAG
* * * * * *
13345484 GAGCCTCGGACACCATCGGCAACCTAGGCTCTTGGTCGTGCAGGAGCCTCGGCCACCATCGACAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
*
13345549 CCTAGGCCCTTGGTCGTGC-A
66 CCTAGGCCCCTGGTCGTGCGA
* * *
13345569 GGAGCCTCGGCCACTATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGG-CACCATCGGT
1 -GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGACACCATCGGC
13345633 AACCTAGGCCCCTGGTCGTGCGA
64 AACCTAGGCCCCTGGTCGTGCGA
**
13345656 GAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAAACACCATCGG-AA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
*
13345719 CCTAGGCCCCTGGTCGTGCGG
66 CCTAGGCCCCTGGTCGTGCGA
* *
13345740 GAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
*
13345804 CCTAGGCCCCTGATCGTGCGA
66 CCTAGGCCCCTGGTCGTGCGA
* * * * * * *
13345825 AAGCCTCGGGTACCATCGGCACCCT-TGCCCCTTGGTCGTGCGAGAGCCTCGG-GACCATCAGC-
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCC-TGGTCGTGCGGGAGCCTCGGACACCATCGGCA
* * *
13345887 ACCTAGGCTCTTGGTCGTGCGG
65 ACCTAGGCCCCTGGTCGTGCGA
* ** * * * *
13345909 GAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCTTGGGACACCATCGGTA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGACACCATCGGCA
13345972 ACCTAGGCCCCTGGTCGTGCGA
65 ACCTAGGCCCCTGGTCGTGCGA
* * ** *
13345994 GAGCCTCGGGCACCATCGGC-ACTTTGGTACTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGACACCATCGGCA
*
13346057 ACCTAGGCCCTTGGTCGTGCCG-
65 ACCTAGGCCCCTGGTCGTG-CGA
* * *
13346079 GAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC-A
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
* ** *
13346143 CCTTGGTGCCTCGGAT-GTGCGG
66 CCTAGGCCCCT-GG-TCGTGCGA
* * * * ** * *
13346165 GAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGACACCATCGGCA
13346228 ACCTAG
65 ACCTAG
13346234 TGTCATGAGT
Statistics
Matches: 572, Mismatches: 73, Indels: 38
0.84 0.11 0.06
Matches are distributed among these distances:
83 21 0.04
84 121 0.21
85 245 0.43
86 181 0.32
87 4 0.01
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (86 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCAA
CCTAGGCCCCTGGTCGTGCGA
Found at i:13345797 original size:169 final size:171
Alignment explanation
Indices: 13345484--13346233 Score: 842
Period size: 169 Copynumber: 4.4 Consensus size: 171
13345474 GGATATGCAG
* * * * * *
13345484 GAGCCTCGGACACCATCGGCAACCTAGGCTCTTGGTCGTGCAGGAGCCTCGGCCACCATCGACAA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCG-GAA
* * *
13345549 CCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACTATCGGCAACCTAGGCCCCTGGTCGTGCGGG
65 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGG
*
13345614 AGCCTCAGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
130 AGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
**
13345656 GAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAAACACCATCGGAAC
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGAAC
* *
13345720 CTAGGCCCCTGGTCGTGCGGGAG-CTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
66 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
* *
13345784 GCCTCGGGCACCATCGGCAACCTAGGCCCCTGATCGTGCGA
131 GCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
* * * * * * * *
13345825 AAGCCTCGGGTACCATCGGCACCCT-TGCCCCTTGGTCGTGCGAGAGCCTCGG-GACCATCAGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCC-TGGTCGTGCGGGAGCCTCGGACACCATCGGAA
* * ** *
13345888 CCTAGGCTCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGG
65 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGG
*
13345951 GAG-CTTGGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
129 GAGCCTCGGG-CACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
* * ** *
13345994 GAGCCTCGGGCACCATCGGC-ACTTTGGTACTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGACACCATCGG-A
* * * *
13346057 ACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTCGTGCGG
64 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGG
* * * ** *
13346122 GAGCCTCGGACACCATCGG-CACCTTGGTGCCTCGGAT-GTGCGG
129 GAGCCTCGGGCACCATCGGTAACCTAGGCCCCT-GG-TCGTGCGA
* * * * ** * *
13346165 GAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCA
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGACACCATCGG-A
13346228 ACCTAG
64 ACCTAG
13346234 TGTCATGAGT
Statistics
Matches: 497, Mismatches: 67, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
168 24 0.05
169 196 0.39
170 120 0.24
171 145 0.29
172 12 0.02
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (171 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGAAC
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGA
GCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGA
Found at i:13346399 original size:35 final size:35
Alignment explanation
Indices: 13346360--13346431 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
13346350 CATCTCCGGA
*
13346360 GCTTGGCAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGCAAATATGG-AAGGAGATCTTCAAAGATAT
13346395 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
13346430 GC
1 GC
13346432 GATCTTAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:13350804 original size:35 final size:35
Alignment explanation
Indices: 13350765--13350836 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
13350755 CATCTCCGGA
*
13350765 GCTTGGCAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGCAAATATGG-AAGGAGATCTTCAAAGATAT
13350800 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
13350835 GC
1 GC
13350837 GATCTTAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:13360488 original size:10 final size:10
Alignment explanation
Indices: 13360473--13360498 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
13360463 GTTGAGGGTT
13360473 TCGTTTTTAG
1 TCGTTTTTAG
13360483 TCGTTTTTAG
1 TCGTTTTTAG
13360493 TCGTTT
1 TCGTTT
13360499 CTGTATGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.12, G:0.19, T:0.62
Consensus pattern (10 bp):
TCGTTTTTAG
Found at i:13365649 original size:24 final size:24
Alignment explanation
Indices: 13365596--13365654 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
13365586 CTGGTTAGGT
*
13365596 TTCCGGCGGTGCTCCGGTGAGCCA
1 TTCCGGCGGTGCTCCGGTGAGCAA
* * * *
13365620 TCCCGGTGTTGCTCTGGTGAGCAA
1 TTCCGGCGGTGCTCCGGTGAGCAA
13365644 TTCCGGCGGTG
1 TTCCGGCGGTG
13365655 TTCAGGCGAG
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.08, C:0.29, G:0.37, T:0.25
Consensus pattern (24 bp):
TTCCGGCGGTGCTCCGGTGAGCAA
Found at i:13372228 original size:13 final size:13
Alignment explanation
Indices: 13372210--13372240 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
13372200 AAAAAAGAAT
*
13372210 GTCGCCTGGTAGG
1 GTCGCCTGGTAGC
13372223 GTCGCCTGGTAGC
1 GTCGCCTGGTAGC
13372236 GTCGC
1 GTCGC
13372241 TTGATAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.29, G:0.42, T:0.23
Consensus pattern (13 bp):
GTCGCCTGGTAGC
Found at i:13386247 original size:20 final size:20
Alignment explanation
Indices: 13386222--13386260 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
13386212 TATAAGATGT
13386222 AACGGGGTTGAAATAATGGC
1 AACGGGGTTGAAATAATGGC
13386242 AACGGGGTTGAAATAATGG
1 AACGGGGTTGAAATAATGG
13386261 TAACAAAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.08, G:0.36, T:0.21
Consensus pattern (20 bp):
AACGGGGTTGAAATAATGGC
Found at i:13393549 original size:24 final size:24
Alignment explanation
Indices: 13393513--13393566 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
13393503 CCAGTTAGGT
* *
13393513 TCCCGGCAGTGCTCCGGCGATCTA
1 TCCCGGCAGTGCTCCGGCGAGCCA
13393537 TCCCGGC-GATGCTCCGGCGAGCCA
1 TCCCGGCAG-TGCTCCGGCGAGCCA
13393561 TCCCGG
1 TCCCGG
13393567 GATATACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 1 0.04
24 26 0.96
ACGTcount: A:0.11, C:0.41, G:0.31, T:0.17
Consensus pattern (24 bp):
TCCCGGCAGTGCTCCGGCGAGCCA
Found at i:13393744 original size:75 final size:75
Alignment explanation
Indices: 13393588--13393745 Score: 217
Period size: 75 Copynumber: 2.1 Consensus size: 75
13393578 TGGCACAACG
* * * * * *
13393588 AGTCCCTCCCCAATCTCAAAAGGTAGAATTTGGATACCGTTACATGTTCGGTACCCAATAATGAA
1 AGTCCCTTCCCAGTC-CCAAAGGTAGAATTCGGATACCATTACATGTTCGGTACCCAAAAATGAA
* *
13393653 TGAATCGTCCC
65 TAAATCATCCC
*
13393664 AGTCCCTTCCCAGTCCCAAAGGTAGAATTCGGATACCATTGCATGTTCGGTACCCAAAAATGAAT
1 AGTCCCTTCCCAGTCCCAAAGGTAGAATTCGGATACCATTACATGTTCGGTACCCAAAAATGAAT
13393729 AAATCATCCC
66 AAATCATCCC
*
13393739 TGTCCCT
1 AGTCCCT
13393746 CCCCTTTTGC
Statistics
Matches: 72, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
75 59 0.82
76 13 0.18
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (75 bp):
AGTCCCTTCCCAGTCCCAAAGGTAGAATTCGGATACCATTACATGTTCGGTACCCAAAAATGAAT
AAATCATCCC
Found at i:13394050 original size:24 final size:25
Alignment explanation
Indices: 13394005--13394057 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 25
13393995 CACATGAATG
13394005 TCGCCTGGTAGTAGCCTGGTAGCAA
1 TCGCCTGGTAGTAGCCTGGTAGCAA
*
13394030 TCGCCTGGTAGT-GCCTGGTAGCAG
1 TCGCCTGGTAGTAGCCTGGTAGCAA
13394054 TCGC
1 TCGC
13394058 AGTAGCAGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 15 0.56
25 12 0.44
ACGTcount: A:0.15, C:0.26, G:0.34, T:0.25
Consensus pattern (25 bp):
TCGCCTGGTAGTAGCCTGGTAGCAA
Found at i:13408372 original size:85 final size:85
Alignment explanation
Indices: 13408215--13408650 Score: 363
Period size: 85 Copynumber: 5.1 Consensus size: 85
13408205 CACATTCGAG
* * * * * *
13408215 GCACCAAGGTGTCGATGGTGCCCGAGACTCCAGCATGACCAAGGGCCTAGGTTGCCGAAGGTGTC
1 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGTCGATGGTGCC
*
13408280 TGAGGCTCTCGTACATCCAA
66 TGAGGCTCTCGCACATCCAA
* * *
13408300 GCACCAAGGTGCC-AGTGGTGCCCGAAGCTCCCGTACGACCAAGGGCCTAGGTTGTCGATGGTGC
1 GCACCAAGGTGCCGA-TGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGTCGATGGTGC
* *
13408364 CTGGGGCTCCCGCACGA-CCAA
65 CTGAGGCTCTCGCAC-ATCCAA
** * * * * *
13408385 GGGCCTAGGTTGCTGATGGTGCCCGAGGCTCTAGCACGTCCAA--GCACTAAGG-TGCCGATGGT
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGC-CT-AGGTTGTCGATGGT
* * *
13408447 GCCCGAGGCTCTTGCATGA-CCAA
63 GCCTGAGGCTCTCGCA-CATCCAA
** * * * *
13408470 GGGCCTAGGTTACCGATGGTGCCCGAGGCTCCTA-CACAACCAAGGGCCTAGGTT-TCTGATTGT
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCC-AGCACGACCAAGGGCCTAGGTTGTC-GATGGT
* *
13408533 -ACTGAGGCTCTCGCAAATCCAA
63 GCCTGAGGCTCTCGCACATCCAA
* * *
13408555 GCACCAAGGTGCCAATGGTGCCCGAGGCTCCCA-CATGACCAAGGGCCTA-GTTTTCCGATGGTG
1 GCACCAAGGTGCCGATGGTGCCCGAGGCT-CCAGCACGACCAAGGGCCTAGGTTGT-CGATGGTG
* * *
13408618 TCTGAGGCTCCCGCACATCGAA
64 CCTGAGGCTCTCGCACATCCAA
13408640 GGCACCAAGGT
1 -GCACCAAGGT
13408651 ACTGATGCTA
Statistics
Matches: 283, Mismatches: 50, Indels: 35
0.77 0.14 0.10
Matches are distributed among these distances:
83 3 0.01
84 43 0.15
85 186 0.66
86 48 0.17
87 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (85 bp):
GCACCAAGGTGCCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGTCGATGGTGCC
TGAGGCTCTCGCACATCCAA
Found at i:13408373 original size:43 final size:43
Alignment explanation
Indices: 13408227--13408633 Score: 310
Period size: 43 Copynumber: 9.6 Consensus size: 43
13408217 ACCAAGGTGT
* * *
13408227 CGATGGTGCCCGAGACTCCAGCATGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * ** *
13408270 CGAAGGTGTCTGAGGCTCTCGTAC-ATCCAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * *
13408312 C-AGTGGTGCCCGAAGCTCCCGTACGACCAAGGGCCTAGGTTGT
1 CGA-TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
13408355 CGATGGTGCCTGGGGCTCCCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* ** *
13408398 TGATGGTGCCCGAGGCTCTAGCACGTCCAA--GCACTAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC-CT-AGGTTGC
** * *
13408440 CGATGGTGCCCGAGGCTCTTGCATGACCAAGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * *
13408483 CGATGGTGCCCGAGGCTCCTACACAACCAAGGGCCTAGGTTTC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * * ** *
13408526 TGATTGT-ACTGAGGCTCTCGCA-AATCCAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * * * *
13408567 CAATGGTGCCCGAGGCTCCCACATGACCAAGGGCCTAGTTTTC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
13408610 CGATGGTGTCTGAGGCTCCCGCAC
1 CGATGGTGCCCGAGGCTCCCGCAC
13408634 ATCGAAGGCA
Statistics
Matches: 280, Mismatches: 70, Indels: 28
0.74 0.19 0.07
Matches are distributed among these distances:
41 11 0.04
42 105 0.38
43 161 0.57
44 3 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (43 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
Found at i:13408452 original size:128 final size:127
Alignment explanation
Indices: 13408224--13408633 Score: 491
Period size: 128 Copynumber: 3.2 Consensus size: 127
13408214 GGCACCAAGG
* * * * * *
13408224 TGTCGATGGTGCCCGAGACTCCAGCATGACCAAGGGCCTAGGTTGCCGAAGGTGTCTGAGGCTCT
1 TGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACTGAGGCTCT
* * * *
13408289 CGTACATCCAAGCACCAAGGTGCCAGTGGTGCCCGAAGCTCCCGTACGACCAAGGGCCTAGGT
66 CGCACATCCAAGCACCAAGGTGCCA-TGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGT
* * * *
13408352 TGTCGATGGTGCCTGGGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCT
1 TGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACTGAGGCTCT
* * * **
13408417 AGCACGTCCAAGCACTAAGGTGCCGATGGTGCCCGAGGCTCTTGCATGACCAAGGGCCTAGGT
66 CGCACATCCAAGCACCAAGGTGCC-ATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGT
** ** * * *
13408480 TACCGATGGTGCCCGAGGCTCCTACACAACCAAGGGCCTAGGTTTCTGATTGT-ACTGAGGCTCT
1 TGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACTGAGGCTCT
* *
13408544 CGCAAATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCACATGACCAAGGGCCTA-GT
66 CGCACATCCAAGCACCAAGGTGCC-ATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGT
* * *
13408606 TTTCCGATGGTGTCTGAGGCTCCCGCAC
1 TGT-CGATGGTGCCCGAGGCTCCCGCAC
13408634 ATCGAAGGCA
Statistics
Matches: 237, Mismatches: 43, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
126 3 0.01
127 81 0.34
128 152 0.64
129 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (127 bp):
TGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACTGAGGCTCT
CGCACATCCAAGCACCAAGGTGCCATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGT
Found at i:13408711 original size:43 final size:42
Alignment explanation
Indices: 13408664--13408755 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
13408654 GATGCTATTT
* *
13408664 GAGGCTCCCACATATCCGAGGCACCAAGGTGCCAATACTGCTC
1 GAGGCTCCCACACATCAGAGGCA-CAAGGTGCCAATACTGCTC
*** ** *
13408707 GAGGCTCCTGTACATCAGAGGCACAAGGTGCTGATGCTGCTC
1 GAGGCTCCCACACATCAGAGGCACAAGGTGCCAATACTGCTC
13408749 GAGGCTC
1 GAGGCTC
13408756 TCTCACCACC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 23 0.56
43 18 0.44
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (42 bp):
GAGGCTCCCACACATCAGAGGCACAAGGTGCCAATACTGCTC
Found at i:13426688 original size:42 final size:42
Alignment explanation
Indices: 13426456--13426688 Score: 121
Period size: 42 Copynumber: 5.5 Consensus size: 42
13426446 AGACCGATCG
* * * * * *
13426456 ATGGTGACTGAGGCTCCCGCGCATCCAAGTACCAAGGTGCCG
1 ATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTACCA
* * * * ** * ** *
13426498 ATGGTACCCGAGGCTCTCGAACAACCAAGGGCCTAAGTTGTCG
1 ATGGTGCCCGAGGCTCCCGCACATCCAAGCACC-AAGGTACCA
* * * * ** * *
13426541 ATGGTGTCCGAGGCTCCCTCA-AGACCGAGGGCCTAGGTTACCG
1 ATGGTGCCCGAGGCTCCCGCACA-TCCAAGCACCAAGG-TACCA
* * * *
13426584 ATGGTG--CGAAGGCTCTCGCAAATGCAAGCACCAAGGTGCCA
1 ATGGTGCCCG-AGGCTCCCGCACATCCAAGCACCAAGGTACCA
* *
13426625 ATGGTGCCCGAGGCTCCCGCACATCCAATCACCAAGGTACCG
1 ATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTACCA
* *
13426667 GTGGTGCTCGAGGCTCCCGCAC
1 ATGGTGCCCGAGGCTCCCGCAC
13426689 GACCAAGGGC
Statistics
Matches: 145, Mismatches: 39, Indels: 14
0.73 0.20 0.07
Matches are distributed among these distances:
41 11 0.08
42 90 0.62
43 44 0.30
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (42 bp):
ATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTACCA
Found at i:13426752 original size:43 final size:42
Alignment explanation
Indices: 13426454--13426791 Score: 181
Period size: 43 Copynumber: 8.0 Consensus size: 42
13426444 AAAGACCGAT
* * *
13426454 CGATGGTGACTGAGGCTCCCGCGCATCCAA-GTACCAAGGTGC
1 CGATGGTG-CCGAGGCTCCCGCACATCCAAGGCACCAAGGTGC
* * * * * * *
13426496 CGATGGTACCCGAGGCTCTCGAACAACCAAGGGC-CTAAGTTGT
1 CGATGGT-GCCGAGGCTCCCGCACATCCAA-GGCACCAAGGTGC
* * * * * *
13426539 CGATGGTGTCCGAGGCTCCCTCA-AGACCGAGG-GCCTAGGTTAC
1 CGATGGTG-CCGAGGCTCCCGCACA-TCCAAGGCACCAAGG-TGC
* * *
13426582 CGATGGTG-CGAAGGCTCTCGCAAATGCAA-GCACCAAGGTGC
1 CGATGGTGCCG-AGGCTCCCGCACATCCAAGGCACCAAGGTGC
* * *
13426623 CAATGGTGCCCGAGGCTCCCGCACATCCAA-TCACCAAGGTAC
1 CGATGGTG-CCGAGGCTCCCGCACATCCAAGGCACCAAGGTGC
* * * *
13426665 CGGTGGTGCTCGAGGCTCCCGCACGA-CCAAGG-GCCTAGTTTGC
1 CGATGGTGC-CGAGGCTCCCGCAC-ATCCAAGGCACCAAG-GTGC
* * *
13426708 CGATGGTGTCCAAGGCTCCCGTACATCGAAGGCACCAAGGTGC
1 CGATGGTG-CCGAGGCTCCCGCACATCCAAGGCACCAAGGTGC
* * ** **
13426751 CGATGCTGCTCGAGGCTTCTACACATCTGAGGCACCAAGGT
1 CGATGGTGC-CGAGGCTCCCGCACATCCAAGGCACCAAGGT
13426792 TCTAATTGTG
Statistics
Matches: 220, Mismatches: 56, Indels: 39
0.70 0.18 0.12
Matches are distributed among these distances:
41 13 0.06
42 100 0.45
43 101 0.46
44 6 0.03
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (42 bp):
CGATGGTGCCGAGGCTCCCGCACATCCAAGGCACCAAGGTGC
Found at i:13429039 original size:38 final size:38
Alignment explanation
Indices: 13428997--13429087 Score: 130
Period size: 38 Copynumber: 2.4 Consensus size: 38
13428987 ACAGGCTATA
* * * *
13428997 TGCTGGAATTATATCCGGG-TTACATCCCGCAGGCTTCG
1 TGCTGGTATTATATCAGGGTTTA-ATCCCGCAGGCCTAG
13429035 TGCTGGTATTATATCAGGGTTTAATCCCGCAGGCCTAG
1 TGCTGGTATTATATCAGGGTTTAATCCCGCAGGCCTAG
13429073 TGCTGGTATTATATC
1 TGCTGGTATTATATC
13429088 TGAGCTTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
38 45 0.94
39 3 0.06
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (38 bp):
TGCTGGTATTATATCAGGGTTTAATCCCGCAGGCCTAG
Found at i:13430050 original size:43 final size:43
Alignment explanation
Indices: 13429957--13430061 Score: 147
Period size: 43 Copynumber: 2.4 Consensus size: 43
13429947 TACACTGATA
* *
13429957 CTGCTCGAGGCTCCCGCACATTCGAGGCACCAAGGTACCGATG
1 CTGCTCGAGGCTCCCGCACATCCGAGGCACCAAGGTACCAATG
* * **
13430000 TTACTCGAGGCTCCCGCACATCCGAGGCACCAAGGTTTCAATG
1 CTGCTCGAGGCTCCCGCACATCCGAGGCACCAAGGTACCAATG
*
13430043 CTGCTCGAGGCTCTCGCAC
1 CTGCTCGAGGCTCCCGCAC
13430062 CACCGATGTT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.20, C:0.35, G:0.26, T:0.19
Consensus pattern (43 bp):
CTGCTCGAGGCTCCCGCACATCCGAGGCACCAAGGTACCAATG
Found at i:13430338 original size:24 final size:24
Alignment explanation
Indices: 13430306--13430352 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
13430296 TTCCAAGATC
13430306 GCTCACCAGAGCACCATCGGGAAA
1 GCTCACCAGAGCACCATCGGGAAA
* *
13430330 GCTCGCCAGAGCACCGTCGGGAA
1 GCTCACCAGAGCACCATCGGGAA
13430353 CCTAACCTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.34, G:0.30, T:0.09
Consensus pattern (24 bp):
GCTCACCAGAGCACCATCGGGAAA
Found at i:13434577 original size:40 final size:40
Alignment explanation
Indices: 13434472--13434616 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
13434462 GCTACTCGTT
*
13434472 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
13434512 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
13434552 CCAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
13434593 CAAA-GCCTT-GGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
13434617 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
39 13 0.14
40 69 0.76
41 9 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:13435863 original size:8 final size:9
Alignment explanation
Indices: 13435848--13435878 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
13435838 AACATGAGAG
13435848 CTTTTTTTT
1 CTTTTTTTT
13435857 CTTTTTTTT
1 CTTTTTTTT
13435866 CTTTTTTTT
1 CTTTTTTTT
13435875 CTTT
1 CTTT
13435879 CTTCTATTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:13440678 original size:188 final size:188
Alignment explanation
Indices: 13440361--13440741 Score: 547
Period size: 188 Copynumber: 2.0 Consensus size: 188
13440351 ACTTAGTAGT
* * *
13440361 TTTAACTGAAAATTTTTTCTATTGGCCCAAAAGAAATACAAGAAGCCGAATGAAATATGGCATGA
1 TTTAACTCAAAATTTTTTCTATTGGCCCAAAACAAATACAAGAAGCCGAATGAAATATAGCATGA
* * *
13440426 TGGCATGGCACGGCACTACAGAAAATTGAACAAGTACCCTGACCACCAACAGTTGGGAGCTCACA
66 TGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCTGACCACCAACAATTGGGAGCTCACA
* *
13440491 CCCGCACCACTACGGCCCCCGTTGTGCCATGTTTC-CTAA-GGGGCGGTACAGCCAAGTG
131 CCCGCACCACCAC-GCCCCCGTTGTGCCATGTTTCTC-AAGGGGGCGGCACAGCCAAGTG
13440549 TTTAACTCAGAAA-TTTTTCTATTGGCCCAAAACAAATACAAGAAGCCGAAT-AAAGTATAGCAT
1 TTTAACTCA-AAATTTTTTCTATTGGCCCAAAACAAATACAAGAAGCCGAATGAAA-TATAGCAT
* ** * * *
13440612 GATGGCATGGCACGACACGGCAGAAAATTGAACAA-TTTCTTAGACCACTAATAATTGGGAGCTC
64 GATGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCT-GACCACCAACAATTGGGAGCTC
*
13440676 ACACCCGCACCACCACGCCCCCGTTGTGCCATGTTTCTCAAGGGGGCGGCACGGCCAAGTG
128 ACACCCGCACCACCACGCCCCCGTTGTGCCATGTTTCTCAAGGGGGCGGCACAGCCAAGTG
13440737 TTTAA
1 TTTAA
13440742 TTAACTCCTT
Statistics
Matches: 173, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
187 29 0.17
188 141 0.82
189 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.22
Consensus pattern (188 bp):
TTTAACTCAAAATTTTTTCTATTGGCCCAAAACAAATACAAGAAGCCGAATGAAATATAGCATGA
TGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCTGACCACCAACAATTGGGAGCTCACA
CCCGCACCACCACGCCCCCGTTGTGCCATGTTTCTCAAGGGGGCGGCACAGCCAAGTG
Found at i:13450320 original size:59 final size:59
Alignment explanation
Indices: 13450228--13450343 Score: 205
Period size: 59 Copynumber: 2.0 Consensus size: 59
13450218 TACGACGTCC
* *
13450228 GAAAGCCCCATATTAACCTTGGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
1 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
*
13450287 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCGTGACATAGGATT
1 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATT
13450344 CCGATATATT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (59 bp):
GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
Found at i:13458607 original size:39 final size:40
Alignment explanation
Indices: 13458525--13458676 Score: 150
Period size: 40 Copynumber: 3.8 Consensus size: 40
13458515 TGGTAGCCCA
* * * *
13458525 CACAAAGGCCTTCGGGACTTAACCCGGGTATCGCAACTCG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATCACAACTCG
* * *
13458565 CACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTTG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATCACAACTCG
* * *
13458604 CACAAATGCCTTCGGGTCTTAGCCCGGATGT-AGTC-ACTAG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATCA--CAACTCG
*
13458644 CACAAATGTCC-TCGAGACTTAGCCCGGATATCA
1 CACAAATG-CCTTCGGGACTTAGCCCGGATATCA
13458677 TTCAATTGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.37
40 55 0.59
41 4 0.04
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACAAATGCCTTCGGGACTTAGCCCGGATATCACAACTCG
Found at i:13461454 original size:26 final size:26
Alignment explanation
Indices: 13461417--13461500 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
13461407 TGATACAAAT
* *
13461417 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13461443 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13461469 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
13461495 TGATAA
1 TGATAA
13461501 GAATTCATGT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:13463155 original size:27 final size:27
Alignment explanation
Indices: 13463111--13463250 Score: 149
Period size: 27 Copynumber: 5.2 Consensus size: 27
13463101 GAGGAAGCGT
*
13463111 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
13463138 TCTGGTGGCTCTGGCACAAATATCTGG
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
13463165 TCTGGTGGCTCTGCCACATATATCT-A
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
13463191 TTCTGGTAGCTCTGCCACGATTATCTGTA
1 -TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
13463220 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
13463246 TCTGG
1 TCTGG
13463251 CAGCCATGCT
Statistics
Matches: 96, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.05
27 76 0.79
28 14 0.15
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:13463336 original size:19 final size:22
Alignment explanation
Indices: 13463312--13463351 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
13463302 CTCCCCACAC
13463312 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
13463331 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
13463352 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:13465829 original size:18 final size:18
Alignment explanation
Indices: 13465806--13465849 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
13465796 TTATTTGCTT
13465806 ATGGCTTATTAAGCTAAG
1 ATGGCTTATTAAGCTAAG
13465824 ATGGCTTATTAAGCTAAG
1 ATGGCTTATTAAGCTAAG
*
13465842 ATAGCTTA
1 ATGGCTTA
13465850 CCTTGTGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (18 bp):
ATGGCTTATTAAGCTAAG
Found at i:13467881 original size:125 final size:125
Alignment explanation
Indices: 13467661--13468252 Score: 1064
Period size: 125 Copynumber: 4.8 Consensus size: 125
13467651 AATTATGTGG
* * * * *
13467661 AATGAAATATGGATGTGTAATGATTATTGAT-T-TATGTGTGTATGAGTATTTGAATGATACCCG
1 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
13467724 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
66 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
* *
13467784 AATGAAACATGGATGTGTAATGATTATTGATGTATATGTGTGTATGAGCAATTGAATGATACCCG
1 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
13467849 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
66 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
13467909 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
1 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
13467974 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
66 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
13468034 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
1 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
13468099 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
66 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
* *
13468159 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGCGCATGAGCAATTGAATGATATCCG
1 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
*
13468224 GGCTAAGTCCCGAAGAC-ATTTATGCTAGT
66 GGCTAAGTCCCGAAGGCGA-TTATGCTAGT
13468253 AATTATATCC
Statistics
Matches: 458, Mismatches: 8, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
123 30 0.07
124 2 0.00
125 426 0.93
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (125 bp):
AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
Found at i:13468276 original size:40 final size:40
Alignment explanation
Indices: 13468217--13468424 Score: 215
Period size: 40 Copynumber: 5.2 Consensus size: 40
13468207 CAATTGAATG
* * * *
13468217 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
13468257 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
13468297 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-ATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGATT
* * *
13468337 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GATT
* * * *
13468377 CTATCCAGGCTAAGACCCGAAGGCATTCGTGC-ATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGATT
13468417 ATATCCGG
1 ATATCCGG
13468425 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.02
40 135 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:13468355 original size:80 final size:80
Alignment explanation
Indices: 13468218--13468424 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 80
13468208 AATTGAATGA
* * ** ** *
13468218 TATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAATTATATCCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GTGGTTATATCCGGGCTAAGACCCGAAGGCA
*
13468282 ATTGTGCTAGT-G-AC
65 ATTGTGCAAGTCGTAC
* *
13468296 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGGGCTAAGACCCGAAGGC
* *
13468361 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
*
13468378 TATCCAGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
13468425 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
80 105 0.95
81 2 0.02
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:13475520 original size:125 final size:125
Alignment explanation
Indices: 13475300--13475766 Score: 805
Period size: 125 Copynumber: 3.8 Consensus size: 125
13475290 AATTATGTGG
* * * * *
13475300 AATGAAATATGGATGTGTAATGATTATTGAT-T-TATGTGTGTATGAGTATTTGAATGATACCCG
1 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
13475363 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
66 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
* *
13475423 AATGAAACATGGATGTGTAATGATTATTGATGTATATGTGTGTATGAGCAATTGAATGATACCCG
1 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
13475488 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
66 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
13475548 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
1 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
13475613 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
66 GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
* **
13475673 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGCGCATGAGCAATTGAATGATATTCG
1 AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
*
13475738 GGCTAAGTCCCGAAGAC-ATTTATGCTAGT
66 GGCTAAGTCCCGAAGGCGA-TTATGCTAGT
13475767 AATTATATCC
Statistics
Matches: 332, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
123 30 0.09
124 2 0.01
125 300 0.90
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.33
Consensus pattern (125 bp):
AATGAAACATGGACGTGTAATGATTATTGATGTATATGTGTGCATGAGCAATTGAATGATACCCG
GGCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGAA
Found at i:13475804 original size:40 final size:40
Alignment explanation
Indices: 13475731--13475938 Score: 192
Period size: 40 Copynumber: 5.2 Consensus size: 40
13475721 CAATTGAATG
* * * * * *
13475731 ATATTCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
13475771 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
13475811 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GTGATT
* * * *
13475851 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGT-GATT
* *
13475891 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GTGATT
13475931 ATATCCGG
1 ATATCCGG
13475939 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
39 8 0.06
40 128 0.91
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:13475870 original size:80 final size:80
Alignment explanation
Indices: 13475773--13475938 Score: 246
Period size: 80 Copynumber: 2.1 Consensus size: 80
13475763 TAGTAATTAT
* *
13475773 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGT-G-ACTACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACT--ATCCGGGCTAAGACCCGAAGGCA
13475836 TTCGTGCATGTGGTTAA
64 TTCGTGCATGTGGTTAA
* * *
13475853 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACCCGAAGGCATT
*
13475918 CGTGCATGTGGTTAT
66 CGTGCATGTGGTTAA
13475933 ATCCGG
1 ATCCGG
13475939 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
80 75 0.96
81 1 0.01
82 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTACTATCCGGGCTAAGACCCGAAGGCATT
CGTGCATGTGGTTAA
Found at i:13479280 original size:12 final size:12
Alignment explanation
Indices: 13479263--13479287 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13479253 ATGTAAGTGA
13479263 TCTTGATGATTT
1 TCTTGATGATTT
13479275 TCTTGATGATTT
1 TCTTGATGATTT
13479287 T
1 T
13479288 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:13480525 original size:55 final size:55
Alignment explanation
Indices: 13480423--13480526 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
13480413 CTTGGGCAAT
* * *
13480423 ACTGACTTATTAACACGGCCATGGCGCACACCCGTGCTGCTTGCCCGTGGATGAC
1 ACTGACTTATTAACACGGCCATGGCGCACACCCATGCTGCCTACCCGTGGATGAC
* * *
13480478 ACTGTCTTTTTAACACGGCCATGGCGCACGCCCATG-TGGCCTACCCGTG
1 ACTGACTTATTAACACGGCCATGGCGCACACCCATGCT-GCCTACCCGTG
13480527 TACAACTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 1 0.02
55 41 0.98
ACGTcount: A:0.18, C:0.34, G:0.25, T:0.23
Consensus pattern (55 bp):
ACTGACTTATTAACACGGCCATGGCGCACACCCATGCTGCCTACCCGTGGATGAC
Found at i:13483059 original size:47 final size:45
Alignment explanation
Indices: 13482982--13483300 Score: 238
Period size: 47 Copynumber: 6.8 Consensus size: 45
13482972 ATGTTACAAT
13482982 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGA
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCCAGA
* * * *
13483029 CGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ATTA
1 -GAGAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCATCCA-GA
*
13483075 TGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCA--CAGA
1 -GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCCAGA
* *
13483121 GATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA
1 GA-GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATC--CAGA
* * * * *
13483171 GATAGCCAGTGTAAAACGTGTCTGGGACACGCATCGGC-T-AAGA
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCCAGA
* * * ** *
13483214 GTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAACA-CGCATATA
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATC-C--AGA
*
13483262 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 -GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
13483301 ACAATATATC
Statistics
Matches: 215, Mismatches: 35, Indels: 40
0.74 0.12 0.14
Matches are distributed among these distances:
43 4 0.02
44 28 0.13
45 3 0.01
46 32 0.15
47 78 0.36
48 44 0.20
49 15 0.07
50 11 0.05
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.20
Consensus pattern (45 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCCAGA
Found at i:13483141 original size:94 final size:93
Alignment explanation
Indices: 13482980--13483300 Score: 370
Period size: 94 Copynumber: 3.4 Consensus size: 93
13482970 GGATGTTACA
* * *
13482980 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-CAGACGAGGGCTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CAGAGATGAGTGCTAGTGTAA
13483044 GACATGTCTGGGACATGCATCAGCCATATT
65 GACATGTCTGGGACATGCATCAGCCATA-T
* * *
13483074 ATGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCACAGAGATGAGTGCCAGAGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAG
* *
13483139 ACATGTCTGGGACATGCATCGGCC-TCGAC
66 ACATGTCTGGGACATGCATCAGCCAT--AT
* * * *
13483168 A-GAGATAGCCAGTGTAA-AACGTGTCTGGGACA-CGCATCGGCTA-AGAG-T-TGTGCTAGTGT
1 ATGAG--AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGAGATGAGTGCTAGTGT
*
13483227 AAGACATGTCTGGGACATGCATCAACACGCATAT
63 AAGACATGTCTGGGACATGCATC-A-GC-CATAT
*
13483261 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
13483301 ACAATATATC
Statistics
Matches: 192, Mismatches: 22, Indels: 26
0.80 0.09 0.11
Matches are distributed among these distances:
91 31 0.16
92 12 0.06
93 32 0.17
94 104 0.54
95 13 0.07
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.21
Consensus pattern (93 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCTAGTGTAAG
ACATGTCTGGGACATGCATCAGCCATAT
Found at i:13489828 original size:12 final size:12
Alignment explanation
Indices: 13489811--13489835 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13489801 ATGTAAGTGA
13489811 TCTTGATGATTT
1 TCTTGATGATTT
13489823 TCTTGATGATTT
1 TCTTGATGATTT
13489835 T
1 T
13489836 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:13490622 original size:47 final size:47
Alignment explanation
Indices: 13490554--13491046 Score: 243
Period size: 47 Copynumber: 10.5 Consensus size: 47
13490544 TTTGTGCACC
* * *
13490554 AGTGTAAGA-CATGTCTTGGACATGCTTCGGCCACATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * *
13490600 AGTGTAAGACCATGTCTAGGACATGACATCTA--CATCCA-GACGAGGGCT
1 AGTGTAAGACCATGTCTGGGACATG-CATC-AGCCA--CATTATGAGAGCT
* * * *
13490648 AGTGTAA-AACATGTTTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * * * *
13490694 AATGTAAGACCATGTCTGGGACACGGCATC-GGCATCCA-GACGAGGGCT
1 AGTGTAAGACCATGTCTGGGACA-TGCATCAGCCA--CATTATGAGAGCT
* * *
13490742 AGTGTAAGA-CATGTCTAGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * * *
13490788 AGGGTAAGACCATGTCTGGGACATAGCATCAG-CATCCA-GACGAGGGTT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCA--CATTATGAGAGCT
* ** * *
13490836 AGTGTAAGA-CATGTTTGGGACATGGCATCAG-CACAGAGATGAGTGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCACA-TTATGAGAGCT
* * * * *
13490883 AGAGTAAGA-CATGTCTGGGACATGCATCGGCCTCGACA-GA-GATAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAG-C-C-ACATTATGAGAGCT
* * * * * * * * * *
13490930 AATGTAA-AACGTGTCTGGGACACGTATCGGCTA-A-GA-GTTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATG-AGAGCT
* * *
13490974 AGTGTAAGA-CATGTCTGGGACATGCATTAGCACGCATATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGC-CACAT-TATGAGAGCT
*
13491022 AGTATAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
13491047 GCGTCGGTAA
Statistics
Matches: 338, Mismatches: 76, Indels: 63
0.71 0.16 0.13
Matches are distributed among these distances:
43 4 0.01
44 26 0.08
45 6 0.02
46 53 0.16
47 155 0.46
48 70 0.21
49 21 0.06
50 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
Found at i:13490716 original size:94 final size:93
Alignment explanation
Indices: 13490554--13490910 Score: 438
Period size: 94 Copynumber: 3.8 Consensus size: 93
13490544 TTTGTGCACC
* * * * * *
13490554 AGTGTAAGACATGTCTT-GGACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGT-TTGGGACATGCATCAGCCATATTATGAGAGCCAATGTAAGACCATGTCTG
13490618 GGACATGACATCTACATCCAGACGAGGGCT
65 GGACATGACATC-ACATCCAGACGAGGGCT
*
13490648 AGTGTAAAACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAATGTAAGACCATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAATGTAAGACCATGTCTGG
* * *
13490713 GACACGGCATCGGCATCCAGACGAGGGCT
66 GACATGACATC-ACATCCAGACGAGGGCT
* * **
13490742 AGTGTAAGACATGTCTAGGACATGCATCAGCCATATTATGAGAGCCAGGGTAAGACCATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAATGTAAGACCATGTCTGG
*
13490807 GACAT-AGCATCAGCATCCAGACGAGGGTT
66 GACATGA-CATCA-CATCCAGACGAGGGCT
* * *
13490836 AGTGTAAGACATGTTTGGGACATGGCATCAGCACAGA-GATGAGTGCCAGA-GTAAGA-CATGTC
1 AGTGTAAGACATGTTTGGGACAT-GCATCAGC-CATATTATGAGAGCCA-ATGTAAGACCATGTC
13490898 TGGGACATG-CATC
63 TGGGACATGACATC
13490911 GGCCTCGACA
Statistics
Matches: 230, Mismatches: 26, Indels: 15
0.85 0.10 0.06
Matches are distributed among these distances:
93 6 0.03
94 198 0.86
95 23 0.10
96 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAATGTAAGACCATGTCTGG
GACATGACATCACATCCAGACGAGGGCT
Found at i:13490898 original size:188 final size:187
Alignment explanation
Indices: 13490554--13490913 Score: 514
Period size: 188 Copynumber: 1.9 Consensus size: 187
13490544 TTTGTGCACC
* * * * *
13490554 AGTGTAAGACATGTCTTGGACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGAGCCAGGGTAAGACCATGTCTAG
*
13490619 GACATGACATCTACATCCAGACGAGGGCTAGTGTAAAACATGTTTGGGACATGCATCAGCCATAT
66 GACATGACATCTACATCCAGACGAGGGCTAGTGTAAAACATGTTTGGGACATGCATCAGCCAGAT
*
13490684 TATGAGAGCCAATGTAAGACCATGTCTGGGACACGGCATCGGCATCCAGACGAGGGCT
131 GATGAGAGCCAATGTAAGACCATGTCTGGGACA-GGCATCGGCATCCAGACGAGGGCT
* *
13490742 AGTGTAAGACATGTCTAGGACATGCATCAGCCATATTATGAGAGCCAGGGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGAGCCAGGGTAAGACCATGTCTAG
* *
13490807 GACAT-AGCATC-AGCATCCAGACGAGGGTTAGTGTAAGACATGTTTGGGACATGGCATCAGCAC
66 GACATGA-CATCTA-CATCCAGACGAGGGCTAGTGTAAAACATGTTTGGGACAT-GCATCAGC-C
* *
13490870 AGA-GATGAGTGCCAGA-GTAAGA-CATGTCTGGGACATGCATCGGC
127 AGATGATGAGAGCCA-ATGTAAGACCATGTCTGGGACAGGCATCGGC
13490914 CTCGACAGAG
Statistics
Matches: 154, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
187 10 0.06
188 117 0.76
189 23 0.15
190 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (187 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGAGCCAGGGTAAGACCATGTCTAG
GACATGACATCTACATCCAGACGAGGGCTAGTGTAAAACATGTTTGGGACATGCATCAGCCAGAT
GATGAGAGCCAATGTAAGACCATGTCTGGGACAGGCATCGGCATCCAGACGAGGGCT
Found at i:13492826 original size:35 final size:35
Alignment explanation
Indices: 13492717--13492827 Score: 98
Period size: 35 Copynumber: 3.2 Consensus size: 35
13492707 AGGTAAGTAC
* * * * *
13492717 ATGTAAGCTTATATTAAACTGGTACATTCGGCTGT
1 ATGTGAGCTTATATTGAACTTGTACATTCGGTTAT
* * * * * *
13492752 ATGTGAGGTTACATTGAA-TTTTAGCATTTGATTAC
1 ATGTGAGCTTATATTGAACTTGTA-CATTCGGTTAT
*
13492787 ATGTGAGCTTATATTGAACTTGTATATTCGGTTAT
1 ATGTGAGCTTATATTGAACTTGTACATTCGGTTAT
13492822 ATGTGA
1 ATGTGA
13492828 AATTATCTTG
Statistics
Matches: 56, Mismatches: 18, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
34 3 0.05
35 49 0.88
36 4 0.07
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (35 bp):
ATGTGAGCTTATATTGAACTTGTACATTCGGTTAT
Found at i:13500533 original size:35 final size:35
Alignment explanation
Indices: 13500439--13500544 Score: 106
Period size: 35 Copynumber: 3.0 Consensus size: 35
13500429 AGTACTTCTA
* * **
13500439 AGCTTATATTGAACTGGTATATTCGGCTATATGTG
1 AGCTTATATTGAACTTGTATATTTGATTATATGTG
* * * * *
13500474 AGGTTACATTGAA-TTTTAGCATTTGATTACATGTG
1 AGCTTATATTGAACTTGTA-TATTTGATTATATGTG
*
13500509 AGCTTATATTGAACTTGTATATTTGTTTATATGTG
1 AGCTTATATTGAACTTGTATATTTGATTATATGTG
13500544 A
1 A
13500545 AATTATCTTG
Statistics
Matches: 54, Mismatches: 15, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
34 3 0.06
35 47 0.87
36 4 0.07
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.44
Consensus pattern (35 bp):
AGCTTATATTGAACTTGTATATTTGATTATATGTG
Found at i:13515645 original size:38 final size:34
Alignment explanation
Indices: 13515570--13515640 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
13515560 TTAACTCATG
13515570 TCATTTACTATTCATTTCCAAAAATCAATCACAA
1 TCATTTACTATTCATTTCCAAAAATCAATCACAA
*
13515604 TCATTTACTATTCATTTCCAAAAGTCAATCACAA
1 TCATTTACTATTCATTTCCAAAAATCAATCACAA
13515638 TCA
1 TCA
13515641 ATCATAATGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.39, C:0.24, G:0.01, T:0.35
Consensus pattern (34 bp):
TCATTTACTATTCATTTCCAAAAATCAATCACAA
Found at i:13522587 original size:46 final size:45
Alignment explanation
Indices: 13522443--13522659 Score: 199
Period size: 46 Copynumber: 4.7 Consensus size: 45
13522433 TTTGTGTGCT
* * * *
13522443 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGTC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGA-GATGA-AGGC
* * * * *
13522489 AATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGAAG-GC
13522536 TAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGCAAGGC
1 -AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATG-AAGGC
* * * *
13522583 AGTGTAAGACATGTTTGGGACATGCATCGG-CTACAAAATG-TGTC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGATGAAGGC
13522627 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGC
13522660 ACAGATATGT
Statistics
Matches: 144, Mismatches: 16, Indels: 21
0.80 0.09 0.12
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 66 0.46
47 30 0.21
48 20 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGAAGGC
Found at i:13522683 original size:94 final size:94
Alignment explanation
Indices: 13522440--13522706 Score: 298
Period size: 94 Copynumber: 2.9 Consensus size: 94
13522430 TCATTTGTGT
* * * *
13522440 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-TATGAGAGTCAATGTAAGACCATGT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCAGATATGTGAGAGTCAGTGTAAGACCATGT
* **
13522504 CTGGGACATGGCATCGGCATTGAGACGAGA
66 CTGGGACATGGCATCGGCA-TGACAAAAGA
* * * *
13522534 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATG-CA-AGGCAGTGTAAGA-CATG
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCC-AGATATGTGAGAGTCAGTGTAAGACCATG
* *
13522596 TTTGGGACAT-GCATCGGC-T-ACAAAATGT
65 TCTGGGACATGGCATCGGCATGACAAAA-GA
13522624 G-TCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGATATGTGAGAGTCAGTGTAAGACC
1 GCT-AGTGTAAGA-CATGTTTGGGACAT-GCATCGGC-CAGATATGTGAGAGTCAGTGTAAGACC
13522688 ATGTCTGGGACATGGCATC
62 ATGTCTGGGACATGGCATC
13522707 TACTTGATGG
Statistics
Matches: 144, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
89 4 0.03
90 12 0.08
91 14 0.10
92 21 0.15
93 15 0.10
94 57 0.40
95 15 0.10
96 6 0.04
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCAGATATGTGAGAGTCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCATGACAAAAGA
Found at i:13524062 original size:42 final size:43
Alignment explanation
Indices: 13523962--13524118 Score: 144
Period size: 42 Copynumber: 3.7 Consensus size: 43
13523952 TGAGATATCG
* * * * *
13523962 TGTAACACCGTGTCTGGGACATAGGCCTCGAT-TTGAGATTTACA
1 TGTAAGACCCTGTCTGGGACATCGGCATCGATACTGA-A-TTACA
* *
13524006 TGTAAGACCATGTCTGGGACATCGGCATCG-TATCTG-ATCT-CG
1 TGTAAGACCCTGTCTGGGACATCGGCATCGATA-CTGAAT-TACA
**
13524048 TGTAAGACCCTGTCTGGGACAGAGGCATCGATACTGAATTACA
1 TGTAAGACCCTGTCTGGGACATCGGCATCGATACTGAATTACA
*
13524091 TGTAAGACCAC-GTCTGGGACGTCGGCAT
1 TGTAAGACC-CTGTCTGGGACATCGGCAT
13524119 TGTACCCGTT
Statistics
Matches: 93, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
42 33 0.35
43 31 0.33
44 27 0.29
45 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACATCGGCATCGATACTGAATTACA
Found at i:13524110 original size:85 final size:86
Alignment explanation
Indices: 13523959--13524118 Score: 234
Period size: 86 Copynumber: 1.9 Consensus size: 86
13523949 ATCTGAGATA
* * * * *
13523959 TCGTGTAACACCGTGTCTGGGACATAGGCCTCGATTTGAGATTTACATGTAAGACCATGTCTGGG
1 TCGTGTAACACCCTGTCTGGGACAGAGGCATCGATCTGAGATTTACATGTAAGACCACGTCTGGG
13524024 ACATCGGCATCGTATCTGATC
66 ACATCGGCATCGTATCTGATC
*
13524045 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATACTGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTGTAACACCCTGTCTGGGACAGAGGCATCGAT-CTGAGATTTACATGTAAGACCACGTCTGG
*
13524108 GACGTCGGCAT
65 GACATCGGCAT
13524119 TGTACCCGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
85 31 0.47
86 32 0.48
87 3 0.05
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (86 bp):
TCGTGTAACACCCTGTCTGGGACAGAGGCATCGATCTGAGATTTACATGTAAGACCACGTCTGGG
ACATCGGCATCGTATCTGATC
Found at i:13530139 original size:38 final size:38
Alignment explanation
Indices: 13530068--13530224 Score: 163
Period size: 38 Copynumber: 4.0 Consensus size: 38
13530058 ATTTGATGTG
* * *
13530068 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGTATTA
*
13530108 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
13530146 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * * * *
13530184 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGTTGGTGTTA
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
13530224 T
1 T
13530225 GTTCGAGTTT
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
37 1 0.01
38 59 0.59
39 11 0.11
40 29 0.29
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:13530167 original size:76 final size:80
Alignment explanation
Indices: 13530068--13530224 Score: 189
Period size: 78 Copynumber: 2.0 Consensus size: 80
13530058 ATTTGATGTG
13530068 TATCCGGGCTTAAAGACCCGCAGG-CTATATGCTGGAATTATATCCG-GGTTAAA-TCCCACAGG
1 TATCCGGGCTTAAAGACCCGCAGGCCTA-ATGCTGGAATTATATCCGAGGTTAAAGTCCCACAGG
13530130 CTTCGTGCTGGTATTA
65 CTTCGTGCTGGTATTA
* * * * * **
13530146 TATCCGGG-TTAAA-TCCCGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCCCGTAGGC
1 TATCCGGGCTTAAAGACCCGCAGGCCTAATGCTGGAATTATATCCGAGGTTAAAGTCCCACAGGC
* *
13530209 TTCGTGTTGGTGTTA
66 TTCGTGCTGGTATTA
13530224 T
1 T
13530225 GTTCGAGTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
76 23 0.34
77 14 0.21
78 30 0.45
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (80 bp):
TATCCGGGCTTAAAGACCCGCAGGCCTAATGCTGGAATTATATCCGAGGTTAAAGTCCCACAGGC
TTCGTGCTGGTATTA
Done.