Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 50 of 292
Found at i:14354290 original size:29 final size:29
Alignment explanation
Indices: 14354258--14354350 Score: 104
Period size: 29 Copynumber: 3.1 Consensus size: 29
14354248 ATTAATATCC
14354258 AAAATAAAATAAATAAATAAT-AAATAATT
1 AAAATAAAATAAATAAATAATAAAATAA-T
14354287 AAAATAAAAT-AATAAAATAATAAAATAAT
1 AAAATAAAATAAAT-AAATAATAAAATAAT
14354316 AAAATAATAGATAAATAAAATAA-AGAAA-AAT
1 AAAATAA-A-ATAAAT-AAATAATA-AAATAAT
14354347 AAAA
1 AAAA
14354351 ATTGGATTGC
Statistics
Matches: 58, Mismatches: 0, Indels: 10
0.85 0.00 0.15
Matches are distributed among these distances:
28 3 0.05
29 25 0.43
30 7 0.12
31 10 0.17
32 13 0.22
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (29 bp):
AAAATAAAATAAATAAATAATAAAATAAT
Found at i:14354298 original size:21 final size:21
Alignment explanation
Indices: 14354268--14354339 Score: 83
Period size: 21 Copynumber: 3.3 Consensus size: 21
14354258 AAAATAAAAT
14354268 AAAT-AAATAATAAATAATTA
1 AAATAAAATAATAAATAATTA
*
14354288 AAATAAAATAATAAAATAATAAA
1 AAATAAAATAAT-AAATAAT-TA
* *
14354311 ATAATAAAATAATAGATAAATA
1 A-AATAAAATAATAAATAATTA
14354333 AAATAAA
1 AAATAAA
14354340 GAAAAATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
20 4 0.09
21 13 0.30
22 9 0.20
23 7 0.16
24 11 0.25
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.25
Consensus pattern (21 bp):
AAATAAAATAATAAATAATTA
Found at i:14360236 original size:64 final size:67
Alignment explanation
Indices: 14360089--14360272 Score: 180
Period size: 66 Copynumber: 2.8 Consensus size: 67
14360079 AACACTTAGT
* * * * *
14360089 ACCACCCATGTGACCTAGC--CATTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCT
1 ACCACACATGTGACCTAGCTACATTTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCACCT
14360152 AA
66 AA
* *
14360154 ACCACACATGCGACCTAGCTACA-TTTATCCCGTAGCTCTTTTGTCTACATGGTATACATC-CC-
1 ACCACACATGTGACCTAGCTACATTTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCACCT
*
14360216 AT
66 AA
** ** * *
14360218 TTCACACATGTGACCTAGCTACCACATAGTATCTCGTAGCTCTCTTGTATACATG
1 ACCACACATGTGACCTAGCT---ACATTTTATCCCGTAGCTCTCTTGTCTACATG
14360273 ATATGCACTT
Statistics
Matches: 97, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
64 18 0.19
65 19 0.20
66 32 0.33
67 5 0.05
68 23 0.24
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (67 bp):
ACCACACATGTGACCTAGCTACATTTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCACCT
AA
Found at i:14370751 original size:10 final size:10
Alignment explanation
Indices: 14370724--14370773 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
14370714 TTAAATTCTA
14370724 AAAGATAAAT
1 AAAGATAAAT
*
14370734 ACAA-ATAATT
1 A-AAGATAAAT
*
14370744 AAAGATAATT
1 AAAGATAAAT
14370754 AAAGATAAAT
1 AAAGATAAAT
*
14370764 AAAAATAAAT
1 AAAGATAAAT
14370774 TCTAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:14375795 original size:31 final size:31
Alignment explanation
Indices: 14375757--14375822 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
14375747 ACAATTAATC
14375757 TTAAAGCTCAGAAACGTCAACTAATCTAAGG
1 TTAAAGCTCAGAAACGTCAACTAATCTAAGG
*
14375788 TTAAAGCTCAGAAACGTCAGCTAATCTAAGG
1 TTAAAGCTCAGAAACGTCAACTAATCTAAGG
14375819 TTAA
1 TTAA
14375823 GGACAACAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (31 bp):
TTAAAGCTCAGAAACGTCAACTAATCTAAGG
Found at i:14379716 original size:177 final size:177
Alignment explanation
Indices: 14379396--14380854 Score: 2186
Period size: 177 Copynumber: 8.2 Consensus size: 177
14379386 ATATGACCAC
* * * *
14379396 AATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT-TCTCAATCTGCTCCACAACTACT
1 AATCTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCT-TCGATCTGCTCCACAACTGCT
* * *
14379460 TAGGGA-AT-AGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGACAAGACCACAAT
65 TAGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
* *
14379523 CGCCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
130 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
*
14379571 AATTTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTT
1 AATCTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTT
* *
14379636 AGGGAGATAAGAGCTTCAATCTTTAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
66 AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
*
14379701 GCCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
131 GCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
* * * * * *
14379748 AATCTGCTCCATTGCCAATATATGGAGATAAGATTCGCCATCTTTGATCTGTTTCACAGCTGCTT
1 AATCTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTT
* *
14379813 AGGGAGATAAGATTTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
66 AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
* *
14379878 GCCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTAGTAGCTAA
131 GCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
* ** *
14379925 AATCTGCTACATTGCCAATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACAGTTGCTC
1 AATCTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTT
* * *
14379990 AGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTTAGGAAGATAAGACTATAATC
66 AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
* *
14380055 GTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
131 GCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
* * * * * * * *
14380102 AATCTCCTCCATTGCCAATACACGGAGATAAGATGCACCATCTTTGATCTGCTCCATAGCAGATT
1 AATCTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTT
* *
14380167 AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAAGAAGACAAGACTACAATC
66 AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
14380232 GCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
131 GCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
* * * * *
14380279 AATCTGCTTCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTACTCCACAACTACTT
1 AATCTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTT
* *
14380344 AGGGAGATAAGATCTTCAATCTTCAGTCTGTTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
66 AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
* * *
14380409 GCCAACCTTCTCTCTTGCTACCTCAGAGAGATAAGACTGGTGGCTAA
131 GCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
* * * *
14380456 AATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTTTGATTTGCTCCACAACTGCTC
1 AATCTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTT
*
14380521 AGGGAGATAAGATTTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
66 AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
* * * *
14380586 GTCAACCTGCTCTCTTACTACCTTAGAGAGAAAAGGCTAGTGGCTAA
131 GCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
* * ** * * * * * *
14380633 AATCTGCTTCATTGCCAATACATGGAGATAAGGTTTGCCATCTTTGATCTACTTCATAGCTGTTT
1 AATCTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTT
* *
14380698 AGGGAGATAAGATCTTCAATCTTTAAGTCTGCTTCCTTGCTACTTCAGGAAGATAAGACTACAAT
66 AGGGAGATAAGATCTTCAATCTTCAA-TCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
14380763 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
130 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
* * * *
14380811 AATTTGCTCCATTGCCGATACATGGAAATAAGATTTACCATCTT
1 AATCTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCTT
14380855 TGGTCTACTC
Statistics
Matches: 1159, Mismatches: 121, Indels: 5
0.90 0.09 0.00
Matches are distributed among these distances:
175 63 0.05
176 3 0.00
177 974 0.84
178 119 0.10
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (177 bp):
AATCTGCTCCATTGCCAATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCACAACTGCTT
AGGGAGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
GCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
Found at i:14379877 original size:44 final size:43
Alignment explanation
Indices: 14379829--14380608 Score: 142
Period size: 44 Copynumber: 17.6 Consensus size: 43
14379819 ATAAGATTTT
*
14379829 CAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
1 CAATCTTCAATCTGC-TCCTTGCTACCTCAGGAAGATAAGACTA
** * * *
14379873 CAATCGCCAACCTGCTCTCTTGCTACCTTA-GAGAGATAAGGCTA
1 CAATCTTCAATCTGCTC-CTTGCTACCTCAGGA-AGATAAGACTA
** * ** * * * *
14379917 GTAGCTAAAATCTGCTACATTGCCA-ATACATGG-AGATAAGATTCA
1 CAATCTTCAATCTGCT-CCTTGCTACCT-CA-GGAAGATAAGACT-A
* * ** ** * *
14379962 CCATCTTCGATCTGCTCCACAG-TTGCTCAGGGAGATAAGATCTT
1 CAATCTTCAATCTGCTCC-TTGCTACCTCAGGAAGATAAGA-CTA
* *
14380006 CAATCTTCAGTCTGCTTCCTTGCTACCTTAGGAAGATAAGACTA
1 CAATCTTCAATCTGC-TCCTTGCTACCTCAGGAAGATAAGACTA
* * * * *
14380050 TAATCGTCAACCTGCTCTCTTGCTACCTCA-GAGAGATAAGGCTG
1 CAATCTTCAATCTGCTC-CTTGCTACCTCAGGA-AGATAAGACTA
**** ** * * *
14380094 GTGGCTAAAATCTCCTCCATTGCCA-ATACACGG-AGATAAGA-TGCA
1 CAATCTTCAATCTGCTCC-TTGCTACCT-CA-GGAAGATAAGACT--A
* ** * ** * * *
14380139 CCATCTTTGATCTGCTCCATAGC-AGATTAGGGAGATAAGATCTT
1 CAATCTTCAATCTGCTCC-TTGCTACCTCAGGAAGATAAGA-CTA
* *
14380183 CAATCTTCAATCTGCTTCCTTGCTACCTCAAGAAGACAAGACTA
1 CAATCTTCAATCTGC-TCCTTGCTACCTCAGGAAGATAAGACTA
** * *
14380227 CAATCGCCAACCTGCTCTCTTGCTACCTCA-GAGAGATAAGGCTA
1 CAATCTTCAATCTGCTC-CTTGCTACCTCAGGA-AGATAAGACTA
**** ** * * * *
14380271 GTGGCTAAAATCTGCTTCATTGC--CGATACATGG-AGATAAGATTCG
1 CAATCTTCAATCTGC-TCCTTGCTAC-CT-CA-GGAAGATAAGACT-A
* * * *** * * *
14380316 CCATCTTCGATCTACTCCACAACTA-CTTAGGGAGATAAGATCTT
1 CAATCTTCAATCTGCTCC-TTGCTACCTCAGGAAGATAAGA-CTA
* *
14380360 CAATCTTCAGTCTGTTTCCTTGCTACCTCAGGAAGATAAGACTA
1 CAATCTTCAATCTG-CTCCTTGCTACCTCAGGAAGATAAGACTA
** * * *
14380404 CAATCGCCAACCTTCTCTCTTGCTACCTCA-GAGAGATAAGACTG
1 CAATCTTCAATCTGCTC-CTTGCTACCTCAGGA-AGATAAGACTA
**** ** * *
14380448 GTGGCTAAAATCTGCTCCATTGC--CGATACATGG-AGATAAGATTCA
1 CAATCTTCAATCTGCTCC-TTGCTAC-CT-CA-GGAAGATAAGACT-A
* ** * * * * * *
14380493 CCATCTTTGATTTGCTCC--ACAACTGCTCAGGGAGATAAGATTTT
1 CAATCTTCAATCTGCTCCTTGCTAC--CTCAGGAAGATAAGA-CTA
14380537 CAATCTTCAATCTGCTTCCTTGCTACCTCAGGAAGATAAGACTA
1 CAATCTTCAATCTGC-TCCTTGCTACCTCAGGAAGATAAGACTA
* * *
14380581 CAATCGTCAACCTGCTCTCTTACTACCT
1 CAATCTTCAATCTGCTC-CTTGCTACCT
14380609 TAGAGAGAAA
Statistics
Matches: 505, Mismatches: 172, Indels: 118
0.64 0.22 0.15
Matches are distributed among these distances:
42 3 0.01
43 33 0.07
44 340 0.67
45 121 0.24
46 5 0.01
47 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
CAATCTTCAATCTGCTCCTTGCTACCTCAGGAAGATAAGACTA
Found at i:14381160 original size:64 final size:64
Alignment explanation
Indices: 14381054--14381299 Score: 366
Period size: 64 Copynumber: 3.8 Consensus size: 64
14381044 ATGATTTTGC
* * *
14381054 CAAATAATGAGGATGCTATGATCAAAATGAATCAAGTACTCCTAACAAGATGTGATGCTGATGT
1 CAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTGATGCTGATGT
* * * *
14381118 TAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGATGCTTATGT
1 CAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTGATGCTGATGT
** ** * *
14381182 CAAATAATTAACATGCTATGATCAAAATGAATCAAACGCTCCTAACTAGATGTAATGTTGATGT
1 CAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTGATGCTGATGT
*
14381246 CAAATAATTAGGATGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGTG
1 CAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTG
14381300 TTATGAATGA
Statistics
Matches: 161, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 161 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (64 bp):
CAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTGATGCTGATGT
Found at i:14382428 original size:14 final size:14
Alignment explanation
Indices: 14382411--14382451 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
14382401 TTGATTCTTT
14382411 TTTTGATTTTTTGA
1 TTTTGATTTTTTGA
*
14382425 TTTTGATTTTTTTA
1 TTTTGATTTTTTGA
*
14382439 TTTCGATCTTTTT
1 TTTTGAT-TTTTT
14382452 TTTGAGGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.12, C:0.05, G:0.10, T:0.73
Consensus pattern (14 bp):
TTTTGATTTTTTGA
Found at i:14382435 original size:24 final size:24
Alignment explanation
Indices: 14382382--14382437 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
14382372 TTCTTTCTTC
14382382 TTTTTTTTT-ATTTTTTTGATTGA
1 TTTTTTTTTGATTTTTTTGATTGA
14382405 TTCTTTTTTTGA-TTTTTTGATTTTGA
1 TT-TTTTTTTGATTTTTTTGA--TTGA
14382431 TTTTTTT
1 TTTTTTT
14382438 ATTTCGATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
23 2 0.07
24 15 0.52
25 6 0.21
26 6 0.21
ACGTcount: A:0.11, C:0.02, G:0.09, T:0.79
Consensus pattern (24 bp):
TTTTTTTTTGATTTTTTTGATTGA
Found at i:14389537 original size:40 final size:38
Alignment explanation
Indices: 14389488--14389595 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
14389478 ATCACGATTT
*
14389488 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
14389528 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
14389568 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
14389596 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:14389555 original size:80 final size:80
Alignment explanation
Indices: 14389447--14389595 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
14389437 TATGGTAACC
* * * *
14389447 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
14389511 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
14389527 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
14389592 CCGG
66 CCGG
14389596 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:14397438 original size:80 final size:80
Alignment explanation
Indices: 14397354--14397502 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
14397344 TATGGTAACC
* * * *
14397354 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
14397418 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
14397434 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
14397499 CCGG
66 CCGG
14397503 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:14397444 original size:40 final size:38
Alignment explanation
Indices: 14397395--14397502 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
14397385 ATCACGATTT
*
14397395 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
14397435 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
14397475 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
14397503 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:14400295 original size:80 final size:80
Alignment explanation
Indices: 14400211--14400359 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
14400201 TATGGTAACC
* * * *
14400211 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
14400275 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
14400291 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
14400356 CCGG
66 CCGG
14400360 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:14400301 original size:40 final size:38
Alignment explanation
Indices: 14400252--14400359 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
14400242 ATCACGATTT
*
14400252 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
14400292 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
14400332 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
14400360 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:14408407 original size:80 final size:80
Alignment explanation
Indices: 14408323--14408471 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
14408313 TATGGTAACC
* * * *
14408323 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
14408387 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
14408403 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
14408468 CCGG
66 CCGG
14408472 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:14408413 original size:40 final size:38
Alignment explanation
Indices: 14408364--14408471 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
14408354 ATCACGATTT
*
14408364 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
14408404 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
14408444 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
14408472 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:14414900 original size:29 final size:29
Alignment explanation
Indices: 14414799--14414892 Score: 188
Period size: 29 Copynumber: 3.2 Consensus size: 29
14414789 GTGACGAGAT
14414799 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
14414828 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
14414857 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
14414886 TGGCACT
1 TGGCACT
14414893 GGGTGTGCGA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:14414917 original size:58 final size:58
Alignment explanation
Indices: 14414795--14414929 Score: 184
Period size: 58 Copynumber: 2.3 Consensus size: 58
14414785 TACGGTGACG
*
14414795 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAA
* **
14414852 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAA
* * *
14414910 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
14414930 GGGCTTAAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 3 0.04
58 64 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.27
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAA
Found at i:14416470 original size:22 final size:22
Alignment explanation
Indices: 14416435--14416492 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
14416425 AAAAGGTATC
* *
14416435 TACAAATTAAATCTT-TAAGAT
1 TACAAATCATATCTTCTAAGAT
14416456 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
14416479 TGCATATCATATCT
1 TACAAATCATATCT
14416493 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 20 0.65
23 8 0.26
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14416527 original size:35 final size:37
Alignment explanation
Indices: 14416469--14416561 Score: 138
Period size: 35 Copynumber: 2.5 Consensus size: 37
14416459 AAAATCATAT
14416469 CTTCTAAGATTGCATATCATATCTAAGATTGCA-ATCA
1 CTTCTAAGATTG-ATATCATATCTAAGATTGCATATCA
14416506 -TATCTAAGATTG-TATCATATCTAAGATTGCATATCA
1 CT-TCTAAGATTGATATCATATCTAAGATTGCATATCA
14416542 CTTCTAAGATTGCATATCAT
1 CTTCTAAGATTG-ATATCAT
14416562 TGAAGATTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 9
0.85 0.00 0.15
Matches are distributed among these distances:
35 19 0.37
36 15 0.29
37 11 0.22
38 6 0.12
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (37 bp):
CTTCTAAGATTGATATCATATCTAAGATTGCATATCA
Found at i:14416540 original size:14 final size:15
Alignment explanation
Indices: 14416485--14416540 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
14416475 AGATTGCATA
14416485 TCATATCTAAGATTG
1 TCATATCTAAGATTG
14416500 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
14416518 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
14416535 -CATATC
1 TCATATC
14416541 ACTTCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:14416569 original size:17 final size:19
Alignment explanation
Indices: 14416471--14416561 Score: 145
Period size: 19 Copynumber: 4.9 Consensus size: 19
14416461 AATCATATCT
14416471 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
14416490 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
14416508 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
14416525 TCTAAGATTGCATATCACT-
1 TCTAAGATTGCATATCA-TA
14416544 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
14416562 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 0, Indels: 9
0.88 0.00 0.12
Matches are distributed among these distances:
17 16 0.24
18 17 0.25
19 34 0.50
20 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14419486 original size:17 final size:19
Alignment explanation
Indices: 14419450--14419490 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
14419440 ATAGATATGA
*
14419450 TATTTAACTTTTATTAATT
1 TATTTAACTTTTACTAATT
14419469 TATTTAA-TTTT-CTAATT
1 TATTTAACTTTTACTAATT
14419486 TATTT
1 TATTT
14419491 CTTATTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 4 0.19
19 7 0.33
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (19 bp):
TATTTAACTTTTACTAATT
Found at i:14430002 original size:49 final size:49
Alignment explanation
Indices: 14429930--14430111 Score: 283
Period size: 49 Copynumber: 3.7 Consensus size: 49
14429920 TGAGGTCACG
* *
14429930 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGATCGCA
* * *
14429979 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT-GATCGCA
*
14430030 TGTGTAGTACTAAGTACAGGCTACTATGTGTACCGGATAATTGATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGATCGCA
*
14430079 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
14430112 TATATAGCCT
Statistics
Matches: 120, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
49 74 0.62
50 4 0.03
51 42 0.35
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGATCGCA
Found at i:14430103 original size:100 final size:100
Alignment explanation
Indices: 14429925--14430111 Score: 338
Period size: 100 Copynumber: 1.9 Consensus size: 100
14429915 TATTGTGAGG
* * *
14429925 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGATCGCATGTGTAGTACT
14429990 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
*
14430025 TCACATGTGTAGTACTAAGTACAGGCTACTATGTGTACCGGATAATTGATCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGATCGCATGTGTAGTACT
14430090 AAGTGCAGGCTACTATGCGTAC
66 AAGTGCAGGCTACTATGCGTAC
14430112 TATATAGCCT
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGATCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
Found at i:14431079 original size:60 final size:60
Alignment explanation
Indices: 14430986--14431105 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
14430976 ATATGGACTT
*
14430986 ACTAAGCATAAAGCTTACCCATCCTCTCCATTTCTTTAGTATTGGTAGGTCGACTCGGGG
1 ACTAAGCATAAAGCTTACCCATCCTCTCCATTTCTTTAGTATTGGCAGGTCGACTCGGGG
14431046 ACTAAGCATAAAGCTTACCCATCCTCTCCATTTCTTTAGTATTGGCAGGTCGACTCGGGG
1 ACTAAGCATAAAGCTTACCCATCCTCTCCATTTCTTTAGTATTGGCAGGTCGACTCGGGG
14431106 TTAGAGATTG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (60 bp):
ACTAAGCATAAAGCTTACCCATCCTCTCCATTTCTTTAGTATTGGCAGGTCGACTCGGGG
Found at i:14437388 original size:54 final size:54
Alignment explanation
Indices: 14437286--14437432 Score: 154
Period size: 54 Copynumber: 2.7 Consensus size: 54
14437276 AATACTTTAG
* ** * *
14437286 TTTACCAAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCAA
1 TTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAGTACCCCCAA
* * * * * *
14437339 TTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAA-TACCCTCAG
1 TTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTA-CCAAAGTACCCCCAA
* *
14437393 TTTGCAAAATTACTAAAATACCCTCGATTTGTAAAATTAC
1 TTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTAC
14437433 TGCAATACTC
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 19 0.25
54 54 0.70
55 4 0.05
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAGTACCCCCAA
Found at i:14437439 original size:27 final size:27
Alignment explanation
Indices: 14437292--14437440 Score: 135
Period size: 27 Copynumber: 5.6 Consensus size: 27
14437282 TTAGTTTACC
* *
14437292 AAATTACTGAAATACCC-CCAGTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
14437318 AAATTAC-CAAAGTACCCCCAATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** *
14437345 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
14437372 AAATTA-TCGAAATACCCTC-AGTTTGCA
1 AAATTACT-GAAATACCCTCGA-TTTGTA
*
14437399 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
14437426 AAATTACTGCAATAC
1 AAATTACTGAAATAC
14437441 TCTTGTAAGA
Statistics
Matches: 100, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
25 3 0.03
26 13 0.13
27 78 0.78
28 6 0.06
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:14437482 original size:27 final size:27
Alignment explanation
Indices: 14437452--14437569 Score: 191
Period size: 27 Copynumber: 4.4 Consensus size: 27
14437442 CTTGTAAGAT
14437452 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
14437479 AGAATTATCGTTTTACCTTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
14437506 AGAATTACCATTTTACCCTTGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
14437533 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
14437560 AAAATTACCA
1 AGAATTACCA
14437570 AAATACCCTC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:14437576 original size:27 final size:27
Alignment explanation
Indices: 14437317--14437631 Score: 152
Period size: 27 Copynumber: 11.7 Consensus size: 27
14437307 CCCCAGTTGT
* * * *
14437317 AAAATTACCAAAGTACCCCCAATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* * **
14437344 AAAATTACCCAAATATCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * *
14437371 AAAATTATCGAAATACCCTC-AGTTTGC
1 AAAATTACCAAAATACCCTCGA-TTTAC
* **
14437398 AAAATTACTAAAATACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
*** * * * *
14437425 AAAATTACTGCAATACTCTTG--TAAG
1 AAAATTACCAAAATACCCTCGATTTAC
***
14437450 ATAGAATTACCATTTTACCCTCGATTTAC
1 A-A-AATTACCAAAATACCCTCGATTTAC
* * **** *
14437479 AGAATTATCGTTTTACCTTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
14437506 AGAATTACCATTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ***
14437533 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
** *
14437560 AAAATTACCAAAATACCCTCGATCAAT
1 AAAATTACCAAAATACCCTCGATTTAC
* **
14437587 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
14437614 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
14437632 CTGATTTGTG
Statistics
Matches: 231, Mismatches: 50, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
25 2 0.01
26 3 0.01
27 222 0.96
28 1 0.00
29 3 0.01
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:14437604 original size:81 final size:81
Alignment explanation
Indices: 14437452--14437604 Score: 180
Period size: 81 Copynumber: 1.9 Consensus size: 81
14437442 CTTGTAAGAT
* * **** * ** * *
14437452 AGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCTTCGATTTACAGAATTACCAT
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATCAACAAAATTACCAA
**
14437517 TTTACCCTTGATTTAC
66 AATACCCTTGATTTAC
*
14437533 AGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAA
1 AGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATCAACAAAATTACCAA
14437598 AATACCC
66 AATACCC
14437605 CTGGTTTGTA
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 58 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.34
Consensus pattern (81 bp):
AGAATTACCATTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATCAACAAAATTACCAA
AATACCCTTGATTTAC
Found at i:14437632 original size:27 final size:27
Alignment explanation
Indices: 14437560--14437646 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
14437550 CTCGATTTAC
***
14437560 AAAATTACCAAAATA-CCCTCGATCAAT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
14437587 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
14437614 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
14437641 GAAATT
1 AAAATT
14437647 CTCGAAACAC
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 49 0.92
28 4 0.08
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:14437673 original size:27 final size:27
Alignment explanation
Indices: 14437649--14438161 Score: 726
Period size: 27 Copynumber: 19.0 Consensus size: 27
14437639 GTGAAATTCT
* *
14437649 CGAAACACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
14437676 TGAAATACCCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
14437703 CGGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
14437730 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
14437757 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
14437784 CGGAATACTCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
14437811 CGGAATACTCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
14437838 TGGAATACCCTTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
14437865 CGGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
14437892 CGGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
14437919 CGGAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
14437946 CGAAATACCTTTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
14437973 C-ACAATACCCTTGTAGGATAGAATTAC
1 CGA-AATACCCCTGTAGGGTAGAATTAC
14438000 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
14438027 CGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
14438054 CGCAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
14438081 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
14438108 TAAAATACCCCTGTAGGGT-GAAATTAC
1 CGAAATACCCCTGTAGGGTAG-AATTAC
* * * *
14438135 CGAGATA-CCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
14438161 C
1 C
14438162 ATTTTGCCCC
Statistics
Matches: 444, Mismatches: 38, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
26 18 0.04
27 425 0.96
28 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:14437674 original size:54 final size:54
Alignment explanation
Indices: 14437589--14438161 Score: 600
Period size: 54 Copynumber: 10.6 Consensus size: 54
14437579 CGATCAATAA
* ** * * *
14437589 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTGATT-TGT-G
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACCGAAATACCCCTG-TTAGGTAG
* * * *
14437642 AAATT-CTCGAAACACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
1 -AATTAC-CGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTTAGGTAG
*
14437697 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG-TAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTTA-GGTAG
* *
14437751 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGGAATACTCCTG-TAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTTA-GGTAG
* * * * *
14437805 AATTACCGGAATACTCCTGTAGGGTAGAATTACTGGAATACCCTTG-TAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTTA-GGTAG
* * *
14437859 AATTATCGGAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTG-TAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTTA-GGTAG
* **
14437913 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCTTTG-TAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTTA-GGTAG
* * *
14437967 AATTATC-ACAATACCCTTGTAGGATAGAATTACCGAAATACCCCTG-TAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTTA-GGTAG
* *
14438021 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTG-TAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTTA-GGTAG
**
14438075 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTG-TAGGGT-G
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTTA-GGTAG
* * * *
14438128 AAATTACCGAGATA-CCTTGTGGGGTAAAATTACC
1 -AATTACCGAAATACCCCTGTAGGGTAGAATTACC
14438162 ATTTTGCCCC
Statistics
Matches: 459, Mismatches: 51, Indels: 19
0.87 0.10 0.04
Matches are distributed among these distances:
53 22 0.05
54 434 0.95
55 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTTAGGTAG
Found at i:14437674 original size:81 final size:82
Alignment explanation
Indices: 14437589--14438137 Score: 537
Period size: 81 Copynumber: 6.8 Consensus size: 82
14437579 CGATCAATAA
* ** **
14437589 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGT-GAAATT-CTC
1 AATTACCGAAATACCCCTGGTAAGGTAAAATTACCAAAATACCCCTGTA-GGGTAG-AATTAC-C
*
14437650 GAAACACCCTTGTAGGGTAG
63 GAAACACCCCTGTAGGGTAG
* * **
14437670 AATTACTGAAATACCCCT-GTAAGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGAA
1 AATTACCGAAATACCCCTGGTAAGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
14437734 ATACCCCTGTAGGGTAG
66 ACACCCCTGTAGGGTAG
* * ** * *
14437751 AATTACCGAAATACCCCT-GTAGGGTAGAATTACCGGAATACTCCTGTAGGGTAGAATTACCGGA
1 AATTACCGAAATACCCCTGGTAAGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
* *
14437815 ATACTCCTGTAGGGTAG
66 ACACCCCTGTAGGGTAG
* * * * * * ** *
14437832 AATTACTGGAATA-CCCTTGTAGGGTAGAATTATCGGAATACCCCTGTAGGGTAGAATTACCGGA
1 AATTACCGAAATACCCCTGGTAAGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
14437896 ATACCCCTGTAGGGTAG
66 ACACCCCTGTAGGGTAG
* * * * ** *
14437913 AATTACCGGAATACCCCT-GTAGGGTAGAATTACCGAAATACCTTTGTAGGGTAGAATTATC-AC
1 AATTACCGAAATACCCCTGGTAAGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGA-
* * *
14437976 AATACCCTTGTAGGATAG
65 AACACCCCTGTAGGGTAG
* * * * *
14437994 AATTACCGAAATACCCCT-GTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCA
1 AATTACCGAAATACCCCTGGTAAGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
14438058 ATACCCCTGTAGGGTAG
66 ACACCCCTGTAGGGTAG
* * *
14438075 AATTACCGAAATACCCCT-GTAGGGTAGAATTACTAAAATACCCCTGTAGGGT-GAAATTACCGA
1 AATTACCGAAATACCCCTGGTAAGGTAAAATTACCAAAATACCCCTGTAGGGTAG-AATTACCGA
14438138 GATACCTTGT
Statistics
Matches: 419, Mismatches: 40, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
80 7 0.02
81 405 0.97
82 7 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.25
Consensus pattern (82 bp):
AATTACCGAAATACCCCTGGTAAGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
ACACCCCTGTAGGGTAG
Found at i:14438640 original size:22 final size:23
Alignment explanation
Indices: 14438591--14438641 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
14438581 AAGCCTTCTG
* * *
14438591 ATTATGGCTTTGTGTCAACCTAC
1 ATTATGGCTCTATGCCAACCTAC
14438614 A-TATGGCTCTATGCCAACCTA-
1 ATTATGGCTCTATGCCAACCTAC
14438635 ATTATGG
1 ATTATGG
14438642 TTGTGTGCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 22 0.92
23 1 0.04
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (23 bp):
ATTATGGCTCTATGCCAACCTAC
Found at i:14438650 original size:22 final size:22
Alignment explanation
Indices: 14438591--14438652 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
14438581 AAGCCTTCTG
*
14438591 ATTATGGCTTTGTGTCAACCTAC
1 ATTATGG-TTTGTGCCAACCTAC
* *
14438614 A-TATGGCTCTATGCCAACCTA-
1 ATTATGG-TTTGTGCCAACCTAC
14438635 ATTATGGTTGTGTGCCAA
1 ATTATGGTT-TGTGCCAA
14438653 ACGTATTTGC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.06
22 29 0.91
23 1 0.03
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (22 bp):
ATTATGGTTTGTGCCAACCTAC
Found at i:14438841 original size:27 final size:27
Alignment explanation
Indices: 14438810--14438870 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
14438800 TATTCTGTTA
* *
14438810 AGTGGCTTTCCCAT-ATTATCTGTTTCT
1 AGTGGCTATCCCATAAATATCTG-TTCT
* *
14438837 TGTGGCTATGCCATAAATATCTGTTCT
1 AGTGGCTATCCCATAAATATCTGTTCT
14438864 AGTGGCT
1 AGTGGCT
14438871 CTGCCACAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.43
Consensus pattern (27 bp):
AGTGGCTATCCCATAAATATCTGTTCT
Found at i:14438875 original size:27 final size:26
Alignment explanation
Indices: 14438826--14438912 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
14438816 TTTCCCATAT
* *
14438826 TATCTGTTTCTTGTGGCTATGCCATAAA
1 TATCTG-TTCTAGTGGCTCTGCCA-AAA
*
14438854 TATCTGTTCTAGTGGCTCTGCCACAA
1 TATCTGTTCTAGTGGCTCTGCCAAAA
* * * *
14438880 TATCTGTATCTGGTGACTCTGTCACAA
1 TATCTGT-TCTAGTGGCTCTGCCAAAA
14438907 TATCTG
1 TATCTG
14438913 ATAACTGAGC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 9 0.17
27 37 0.71
28 6 0.12
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (26 bp):
TATCTGTTCTAGTGGCTCTGCCAAAA
Found at i:14439087 original size:6 final size:6
Alignment explanation
Indices: 14439072--14439162 Score: 60
Period size: 6 Copynumber: 14.8 Consensus size: 6
14439062 ATTCTGTTAC
* * * * * *
14439072 CTGATA CTGATT CTGATT TTGATT CTGGTAC CTGATA CTGGTT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT-T CTGATT CTGATT CTGATT
* *
14439121 CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
14439163 AATGTTTCTT
Statistics
Matches: 65, Mismatches: 14, Indels: 12
0.71 0.15 0.13
Matches are distributed among these distances:
5 2 0.03
6 55 0.85
7 7 0.11
8 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.18, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:14439095 original size:31 final size:31
Alignment explanation
Indices: 14439057--14439120 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
14439047 ACATTCTAAT
*
14439057 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGGTACCTGATACTGATTCTGA
*
14439088 TTTTGATTCTGGTACCTGATACTGGTTCTGA
1 TTTTGATTCTGGTACCTGATACTGATTCTGA
14439119 TT
1 TT
14439121 CTGTCACCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.17, C:0.16, G:0.19, T:0.48
Consensus pattern (31 bp):
TTTTGATTCTGGTACCTGATACTGATTCTGA
Found at i:14439106 original size:25 final size:26
Alignment explanation
Indices: 14439078--14439148 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
14439068 TTACCTGATA
*
14439078 CTGATTCTGATTTTGATTCTGGT-AC
1 CTGATTCTGATTCTGATTCTGGTCAC
* *
14439103 CTGATACTGGTTCTGATTCT-GTCAC
1 CTGATTCTGATTCTGATTCTGGTCAC
*
14439128 CTAATTCTGATTCTGATTCTG
1 CTGATTCTGATTCTGATTCTG
14439149 ATTCTAGTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 2 0.05
25 36 0.95
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (26 bp):
CTGATTCTGATTCTGATTCTGGTCAC
Found at i:14441225 original size:27 final size:27
Alignment explanation
Indices: 14441109--14441254 Score: 135
Period size: 27 Copynumber: 5.6 Consensus size: 27
14441099 TTAGTTTACC
14441109 AAATTACTGAAATACCC-CAG-TTGTA
1 AAATTACTGAAATACCCTCAGTTTGTA
* * *
14441134 AAATTAC-CAAAGTACCC-CAATTTATA
1 AAATTACTGAAA-TACCCTCAGTTTGTA
** * *
14441160 AAATTACCCAAATATCCTC-GATTGTA
1 AAATTACTGAAATACCCTCAGTTTGTA
*
14441186 AAATTA-TCGAAATACCCTCAGTTTGCA
1 AAATTACT-GAAATACCCTCAGTTTGTA
*
14441213 AAATTACTAAAATACCCTC-GATTTGTA
1 AAATTACTGAAATACCCTCAG-TTTGTA
14441240 AAATTACTGAAATAC
1 AAATTACTGAAATAC
14441255 TCCTGTAAGA
Statistics
Matches: 98, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
24 3 0.03
25 14 0.14
26 35 0.36
27 45 0.46
28 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAGTTTGTA
Found at i:14441232 original size:53 final size:52
Alignment explanation
Indices: 14441103--14441254 Score: 157
Period size: 53 Copynumber: 2.9 Consensus size: 52
14441093 AATACTTTAG
* * *
14441103 TTTACCAAATTACTGAAATACCC-C-AGTTGTAAAATTACCAAAGTACCCCAA
1 TTTACAAAATTACTAAAATACCCTCGAGTTGTAAAATTACGAAA-TACCCCAA
* ** * *
14441154 TTTATAAAATTACCCAAATATCCTCGA-TTGTAAAATTATCGAAATACCCTCAG
1 TTTACAAAATTACTAAAATACCCTCGAGTTGTAAAATTA-CGAAATACCC-CAA
* *
14441207 TTTGCAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATAC
1 TTTACAAAATTACTAAAATACCCTCGAGTTGTAAAATTAC-GAAATAC
14441255 TCCTGTAAGA
Statistics
Matches: 83, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
51 18 0.22
52 17 0.20
53 30 0.36
54 18 0.22
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (52 bp):
TTTACAAAATTACTAAAATACCCTCGAGTTGTAAAATTACGAAATACCCCAA
Found at i:14441298 original size:27 final size:27
Alignment explanation
Indices: 14441268--14441381 Score: 192
Period size: 27 Copynumber: 4.2 Consensus size: 27
14441258 TGTAAGATAG
14441268 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* * *
14441295 AATTATCGTTTTACCTTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
*
14441322 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAA
14441349 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
14441376 AATTAC
1 AATTAC
14441382 TAAAATACCC
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:14441390 original size:27 final size:27
Alignment explanation
Indices: 14441133--14441471 Score: 165
Period size: 27 Copynumber: 12.6 Consensus size: 27
14441123 CCCCAGTTGT
* * *
14441133 AAAATTACCAAAGTACCC-CAATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* *
14441159 AAAATTACCCAAATATCCTCGATTGT--
1 AAAATTACCAAAATACCCTCGATT-TAC
* * *
14441185 AAAATTATCGAAATACCCTC-AGTTTGC
1 AAAATTACCAAAATACCCTCGA-TTTAC
* **
14441212 AAAATTACTAAAATACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
** * *
14441239 AAAATTACTGAAATACTCCT-G--TAAG
1 AAAATTACCAAAATAC-CCTCGATTTAC
***
14441264 ATAGAATTACCATTTTACCCTCGATTTAC
1 A-A-AATTACCAAAATACCCTCGATTTAC
* **** *
14441293 AAAATTATCGTTTTACCTTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
***
14441320 AAAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ***
14441347 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* * ** *
14441374 AAAATTACTAAAATACCCTCAATCAAT
1 AAAATTACCAAAATACCCTCGATTTAC
* **
14441401 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
**
14441428 AAAATTACCAAAATACCC-CTGATTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
* *
14441455 GAAATTACCGAAATACC
1 AAAATTACCAAAATACC
14441472 ATTGTAGGGT
Statistics
Matches: 253, Mismatches: 47, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
25 4 0.02
26 39 0.15
27 201 0.79
28 6 0.02
29 3 0.01
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:14441434 original size:81 final size:80
Alignment explanation
Indices: 14441133--14441437 Score: 230
Period size: 81 Copynumber: 3.8 Consensus size: 80
14441123 CCCCAGTTGT
* * * * *
14441133 AAAATTACCAAAGTACCC-CAATTTATAAAATTACCCAAATATCCTCGATTGTAAAATTATCGA-
1 AAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAATACCCTCGATTGTAAAATTA-CCAT
** *
14441196 AATACCCTC-AGTTTGC
65 TTTACCCTCGA-TTTAC
* * ** * *
14441212 AAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATACTCCT-G-TAAGATAGAATTACC
1 AAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAATAC-CCTCGAT-TG-TAAAATTACC
14441275 ATTTTACCCTCGATTTAC
63 ATTTTACCCTCGATTTAC
** * * * ***
14441293 AAAATTATCGT--TTTACCTTCGATTTACAAAATTACCATTTTACCCTCGATT-TACAGAATTAC
1 AAAATTA-C-TAAAATACCCTCAATTTATAAAATTACCAAAATACCCTCGATTGTA-A-AATTAC
14441355 CATTTTACCCTCGATTTAC
62 CATTTTACCCTCGATTTAC
** * *
14441374 AAAATTACTAAAATACCCTCAATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCA
1 AAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAATA-CCCTCGATTGTAAAATTACCA
14441438 AAATACCCCT
Statistics
Matches: 173, Mismatches: 37, Indels: 30
0.72 0.15 0.12
Matches are distributed among these distances:
79 20 0.12
80 27 0.16
81 112 0.65
82 11 0.06
83 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.32
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAATACCCTCGATTGTAAAATTACCATT
TTACCCTCGATTTAC
Found at i:14441487 original size:27 final size:27
Alignment explanation
Indices: 14441457--14441919 Score: 592
Period size: 27 Copynumber: 17.2 Consensus size: 27
14441447 TGATTTGTGA
**
14441457 AATTACCGAAATACCATTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
14441484 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14441511 AATTATCGACATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
14441538 AATTACTGGAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14441565 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14441592 AATTACCGAAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14441619 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14441646 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14441673 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14441700 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14441727 AATTACC-AGAATACCTCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
14441754 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14441781 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14441808 AATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14441834 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
14441861 AATTACTAAAATACCCCTGTAGGGT-G
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
14441887 AAATTATCGAGATA-CCTTGTGGGGTAA
1 -AATTACCGAAATACCCCTGTAGGGTAG
14441914 AATTAC
1 AATTAC
14441920 GATTTTGCCC
Statistics
Matches: 383, Mismatches: 48, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
26 38 0.10
27 344 0.90
28 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:14442399 original size:22 final size:22
Alignment explanation
Indices: 14442347--14442400 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
14442337 TTAAAGCCTT
* * *
14442347 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTATGCCAAC
*
14442369 CT-ACATATGGCTCTATGCCAAC
1 CTGA-TTATGGCTCTATGCCAAC
14442391 CTGATTATGG
1 CTGATTATGG
14442401 TTGTGTGCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTATGCCAAC
Found at i:14442658 original size:27 final size:26
Alignment explanation
Indices: 14442570--14442670 Score: 121
Period size: 27 Copynumber: 3.8 Consensus size: 26
14442560 ATTTTGTTAA
* *
14442570 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
14442597 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
14442624 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* **
14442651 GTGACTCTATCACAATATCT
1 GTGGCTCTGCCACAATATCT
14442671 AATAACTGAG
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 9 0.14
27 50 0.76
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:14442854 original size:31 final size:31
Alignment explanation
Indices: 14442808--14442879 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
14442798 TTGCATTCAC
* *
14442808 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCAGATACTA
14442840 ATTCTGATTTTGATTCTGTTACCAGATACTA
1 ATTCTGATTTTGATTCTGTTACCAGATACTA
*
14442871 ATTATGATT
1 ATTCTGATT
14442880 CTGTCACCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
31 30 0.81
32 7 0.19
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCAGATACTA
Found at i:14442903 original size:25 final size:25
Alignment explanation
Indices: 14442839--14442907 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
14442829 ACCTGATACT
* *
14442839 GATTCTGATTTTGATTCTGTTACCA
1 GATTCTGATTATGATTCTGTCACCA
* *
14442864 GATACTAATTATGATTCTGTCACCTA
1 GATTCTGATTATGATTCTGTCACC-A
*
14442890 -ATTCTGATTCTGATTCTG
1 GATTCTGATTATGATTCTG
14442908 ATTCTAGTTC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 35 0.97
26 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.45
Consensus pattern (25 bp):
GATTCTGATTATGATTCTGTCACCA
Found at i:14443068 original size:29 final size:29
Alignment explanation
Indices: 14443025--14443090 Score: 114
Period size: 29 Copynumber: 2.2 Consensus size: 29
14443015 TGGGGCTAGA
*
14443025 CTTTTAATTCTTTTATATGACTGACTGTTC
1 CTTTT-ATTCTTTTATATGACTAACTGTTC
14443055 CTTTTATTCTTTTATATGACTAACTGTTC
1 CTTTTATTCTTTTATATGACTAACTGTTC
14443084 CTTTTAT
1 CTTTTAT
14443091 AGTAGGGGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 30 0.86
30 5 0.14
ACGTcount: A:0.20, C:0.17, G:0.08, T:0.56
Consensus pattern (29 bp):
CTTTTATTCTTTTATATGACTAACTGTTC
Found at i:14444115 original size:23 final size:23
Alignment explanation
Indices: 14444076--14444212 Score: 154
Period size: 22 Copynumber: 5.9 Consensus size: 23
14444066 AACCTCCTCC
14444076 TGAGCTGATAGACAGTAAGCTCTAT
1 TGAGCTGA-A-ACAGTAAGCTCTAT
*
14444101 TAAGCTGAAACAGTAAGCTCTAT
1 TGAGCTGAAACAGTAAGCTCTAT
* *
14444124 CGAGCT-AAATAGTAAGCTCTAT
1 TGAGCTGAAACAGTAAGCTCTAT
14444146 TGAGCTG-AACAGTAAGCTC-AT
1 TGAGCTGAAACAGTAAGCTCTAT
* * *
14444167 AAGAGCTGAAACAGTAAGCTCCAA
1 -TGAGCTGAAACAGTAAGCTCTAT
*
14444191 TGAGCTGAAAATAGTAAGCTCT
1 TGAGCTG-AAACAGTAAGCTCT
14444213 TACGAGCTGA
Statistics
Matches: 96, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
21 2 0.02
22 37 0.39
23 36 0.38
24 14 0.15
25 7 0.07
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAT
Found at i:14444144 original size:45 final size:47
Alignment explanation
Indices: 14444077--14444222 Score: 176
Period size: 45 Copynumber: 3.1 Consensus size: 47
14444067 ACCTCCTCCT
*
14444077 GAGCTGATAGACAGTAAGCTCTATTAAGCTGAAACAGTAAGCTCTAT-C
1 GAGCTGA-A-ACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTATAC
* *
14444125 GAGCT-AAATAGTAAGCTCTATTGAGCTG-AACAGTAAGCTC-ATAA
1 GAGCTGAAACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTATAC
* * *
14444169 GAGCTGAAACAGTAAGCTCCAATGAGCTGAAAATAGTAAGCTCT-TAC
1 GAGCTGAAACAGTAAGCTCTATTGAGCTG-AAACAGTAAGCTCTATAC
14444216 GAGCTGA
1 GAGCTGA
14444223 TATATTGGTA
Statistics
Matches: 85, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
43 2 0.02
44 17 0.20
45 39 0.46
46 1 0.01
47 21 0.25
48 5 0.06
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (47 bp):
GAGCTGAAACAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTATAC
Found at i:14444885 original size:21 final size:21
Alignment explanation
Indices: 14444841--14444886 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
14444831 AAACTTGTAT
* *
14444841 ATCTATCATTAAACCTTCATA
1 ATCTATCATTAAACATTCAAA
*
14444862 ATCTATCATTAAACATTTAAA
1 ATCTATCATTAAACATTCAAA
14444883 ATCT
1 ATCT
14444887 CAAGCATTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (21 bp):
ATCTATCATTAAACATTCAAA
Found at i:14451708 original size:23 final size:23
Alignment explanation
Indices: 14451680--14451757 Score: 97
Period size: 23 Copynumber: 3.4 Consensus size: 23
14451670 CTGATGGACA
*
14451680 GTAAGCTCTATTGAGCTGAAACG
1 GTAAGCTCTATCGAGCTGAAACG
* *
14451703 GTAAGCTCTATCAAGCTG-AACA
1 GTAAGCTCTATCGAGCTGAAACG
14451725 GTAAGCTC-ATACGAGCTGAAACG
1 GTAAGCTCTAT-CGAGCTGAAACG
*
14451748 ATAAGCTCTA
1 GTAAGCTCTA
14451758 ATGAGCTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
21 2 0.04
22 17 0.37
23 26 0.57
24 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (23 bp):
GTAAGCTCTATCGAGCTGAAACG
Found at i:14455454 original size:30 final size:31
Alignment explanation
Indices: 14455378--14455460 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
14455368 TCAGTCTCGA
14455378 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
14455408 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
14455439 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
14455461 ACTGTAAGTG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 18 0.35
31 34 0.65
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:14455708 original size:25 final size:25
Alignment explanation
Indices: 14455680--14455749 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
14455670 CTCTTTTAAT
*
14455680 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
14455705 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
14455730 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
14455750 AGCGCTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:14458204 original size:46 final size:46
Alignment explanation
Indices: 14458149--14458307 Score: 173
Period size: 46 Copynumber: 3.4 Consensus size: 46
14458139 GTTGAGCATC
14458149 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
* * * * * *
14458195 CAAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAA-T--G--TT
* *
14458242 CGAACTCGTTAAGTTGAGTCCAAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
14458288 CGAACTCGTTGAGTTGAGTC
1 CGAACTCGTTGAGTTGAGTC
14458308 TAAGTTCGTG
Statistics
Matches: 89, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.06
45 3 0.03
46 45 0.51
47 24 0.27
48 3 0.03
50 5 0.06
51 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
Found at i:14458260 original size:47 final size:47
Alignment explanation
Indices: 14458197--14458361 Score: 169
Period size: 47 Copynumber: 3.5 Consensus size: 47
14458187 CGAATGTTCA
*
14458197 AACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCTAAGTTCGTGAGATGTAACTAGGCATCCG
* * * * * *
14458244 AACTCGTTAAGTTGAGTCCAAGTTCACTTACGGATGCGAA-T--G--TTCG
1 AACTCGTTGAGTTGAGTCTAAGTTC-GTGA--GATG-TAACTAGGCATCCG
14458290 AACTCGTTGAGTTGAGTCTAAGTTCGTGAGATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCTAAGTTCGTGAGATGTAACTAGGCATCCG
* * *
14458337 AACTCATTTAGTTGAGTCTGAGTTC
1 AACTCGTTGAGTTGAGTCTAAGTTC
14458362 ACTTATAGAT
Statistics
Matches: 93, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 26 0.28
47 47 0.51
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.32
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCTAAGTTCGTGAGATGTAACTAGGCATCCG
Found at i:14458303 original size:93 final size:93
Alignment explanation
Indices: 14458144--14458407 Score: 393
Period size: 93 Copynumber: 2.8 Consensus size: 93
14458134 GGATGGTTGA
* *
14458144 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCAAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
14458209 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
*
14458237 GCATCCGAACTCGTTAAGTTGAGTCCAAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
*
14458302 TGAGTCTAAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
* * * ** * ** * *
14458330 GCATCCGAACTCATTTAGTTGAGTCTGAGTTCACTTATAGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
*
14458395 TGAGTCCGAGTTC
66 TGAGTCTGAGTTC
14458408 ACTTAGGGGC
Statistics
Matches: 154, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 154 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:14460615 original size:16 final size:16
Alignment explanation
Indices: 14460594--14460625 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
14460584 CGGAAAGTCA
14460594 AGAAATATGAATCCTC
1 AGAAATATGAATCCTC
14460610 AGAAATATGAATCCTC
1 AGAAATATGAATCCTC
14460626 GTCCCCAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (16 bp):
AGAAATATGAATCCTC
Found at i:14465695 original size:46 final size:45
Alignment explanation
Indices: 14465645--14465908 Score: 252
Period size: 46 Copynumber: 5.7 Consensus size: 45
14465635 TTGAGCATCC
*
14465645 AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTCCG
* * *
14465691 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G--TCCG
*
14465738 AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTCCG
* * * *
14465784 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G--TCCG
* * *
14465831 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTCCG
*
14465877 AGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
14465909 GGCGGGTTAC
Statistics
Matches: 178, Mismatches: 22, Indels: 37
0.75 0.09 0.16
Matches are distributed among these distances:
42 4 0.02
43 10 0.06
45 8 0.04
46 83 0.47
47 54 0.30
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGTCCG
Found at i:14465758 original size:47 final size:47
Alignment explanation
Indices: 14465689--14465855 Score: 209
Period size: 47 Copynumber: 3.6 Consensus size: 47
14465679 TGCGAATGTT
14465689 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATC
* * * *
14465736 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAA-T--G--TT
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
14465782 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATC
* *
14465829 CAAACTCGTTGAGTTGAGTCTGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
14465856 ACTTATGGAT
Statistics
Matches: 101, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 28 0.28
47 53 0.52
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATC
Found at i:14465804 original size:93 final size:92
Alignment explanation
Indices: 14465639--14465901 Score: 454
Period size: 93 Copynumber: 2.8 Consensus size: 92
14465629 GGATGGTTGA
14465639 GCATCCAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGTT
1 GCATCCAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGTT
14465704 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
14465731 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
14465796 TGAGTCCGAGTTCGTGAGATGTAACTAG
65 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * ** *
14465824 GCATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
14465889 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
14465902 ACTTAGGGGC
Statistics
Matches: 163, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 6 0.04
93 157 0.96
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:14472183 original size:2 final size:2
Alignment explanation
Indices: 14472176--14472205 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14472166 TCACTTTCAA
14472176 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14472206 TCAACTTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14476523 original size:43 final size:43
Alignment explanation
Indices: 14476456--14476848 Score: 599
Period size: 43 Copynumber: 9.1 Consensus size: 43
14476446 CCGGCATTAC
* * *
14476456 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGTCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
* * * *
14476499 TCCTACTAGGCACGAAGGCTCGAATACACATCACCGACATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
* *
14476542 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGACATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
14476585 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
* *
14476628 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
* *
14476671 GCCTGCTAGGCACAAAAGCCCGAATACACATCACCTG-CACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACC-GACACGAA
* **
14476714 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGGACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
* *
14476757 GCCTGCTAGGTACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
*
14476800 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
14476843 GCCTGC
1 GCCTGC
14476849 GGGTCTTTAA
Statistics
Matches: 326, Mismatches: 22, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
42 1 0.00
43 324 0.99
44 1 0.00
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
Found at i:14478089 original size:2 final size:2
Alignment explanation
Indices: 14478082--14478121 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
14478072 GCTCTTGTAC
14478082 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14478122 GTTTGCACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14479110 original size:123 final size:123
Alignment explanation
Indices: 14478646--14479093 Score: 851
Period size: 123 Copynumber: 3.6 Consensus size: 123
14478636 AATTATATTG
*
14478646 AAATGAAATATGGATGTGTCATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
14478711 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
14478769 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
*
14478834 GCTAAGTCCCGAAGGCAATTATGCTAATGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
14478892 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
*
14478957 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAATGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* *
14479015 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
14479080 GCTAAGTCCCGAAG
66 GCTAAGTCCCGAAG
14479094 ACATTTATAC
Statistics
Matches: 319, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 319 1.00
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:14479154 original size:40 final size:40
Alignment explanation
Indices: 14479072--14479256 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
14479062 CAATTGAATG
* * * *
14479072 ATATCCGGGCTAAGTCCCGAAGACATTTATACTG-G-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGC-GAGTTG-TT
* * * **
14479112 ATATCCGGGTTAAGACCTGAAGGTAATGGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGTT
14479152 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGTT
*
14479192 ATATCCGGGTTAAGACCCGAAGGCAATTATGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGTT
*
14479232 ATATCTGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
14479257 TTCGTGCTTG
Statistics
Matches: 126, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.98
41 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGTT
Found at i:14479273 original size:80 final size:79
Alignment explanation
Indices: 14479072--14479277 Score: 259
Period size: 80 Copynumber: 2.6 Consensus size: 79
14479062 CAATTGAATG
* * * * * * *
14479072 ATATCCGGGCTAAGTCCCGAAGACATTTATACTGGTGATTATATCCGGGTTAAGACCTGAAGGTA
1 ATATCCGGGCTAAGACCCGAAGGCA-TTATGCTAGTGGTTATATCCGGGTTAAGACCCGAAGGCA
*
14479137 ATGGTGCGAGTTGTT
65 ATGATGCGAGTTGTT
* *
14479152 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGTTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-ATTATGCTAGTGGTTATATCCGGGTTAAGACCCGAAGGCA
*
14479217 ATTATGCGAGTTGTT
65 ATGATGCGAGTTGTT
* * *
14479232 ATATCTGGGCTAAGACCCGAAGGCATTCGTGCTTGTGGTTATATCC
1 ATATCCGGGCTAAGACCCGAAGGCATT-ATGCTAGTGGTTATATCC
14479278 TGTTATATTC
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
79 3 0.03
80 104 0.96
81 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTATGCTAGTGGTTATATCCGGGTTAAGACCCGAAGGCAA
TGATGCGAGTTGTT
Found at i:14487206 original size:123 final size:123
Alignment explanation
Indices: 14486987--14487451 Score: 885
Period size: 123 Copynumber: 3.8 Consensus size: 123
14486977 AATTATATTG
*
14486987 AAATGAAATATGGATGTGTCATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
14487052 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
14487110 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
14487175 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
14487233 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
14487298 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
* *
14487356 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
* *
14487421 GCTAAGTCCCGAAGACATTTATGCTAGTGAT
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGAT
14487452 TATATCCGGG
Statistics
Matches: 337, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 337 1.00
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGCATGAGCAATTGAATTATACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
Found at i:14487614 original size:80 final size:79
Alignment explanation
Indices: 14487413--14487620 Score: 308
Period size: 80 Copynumber: 2.6 Consensus size: 79
14487403 CAATTGAATG
* * *
14487413 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA-TTATGCTAGTGGTTATATCCGGGTTAAGACCCGAAGGCA
*
14487478 ATTGTGCGAGTTGTT
65 ATTATGCGAGTTGTT
* * *
14487493 ATATCCGAGCTAAGACCCGAAGGCAATTATGCAAGTTGTTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-ATTATGCTAGTGGTTATATCCGGGTTAAGACCCGAAGGCA
14487558 ATTATGCGAGTTGTT
65 ATTATGCGAGTTGTT
* *
14487573 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCTTGTGGTTATATCCGG
1 ATATCCGGGCTAAGACCCGAAGGCATT-ATGCTAGTGGTTATATCCGG
14487621 TTATATTCCG
Statistics
Matches: 114, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
79 3 0.03
80 110 0.96
81 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTATGCTAGTGGTTATATCCGGGTTAAGACCCGAAGGCAA
TTATGCGAGTTGTT
Found at i:14487620 original size:40 final size:40
Alignment explanation
Indices: 14487413--14487597 Score: 273
Period size: 40 Copynumber: 4.6 Consensus size: 40
14487403 CAATTGAATG
* * * *
14487413 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG-TT
* *
14487453 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGTT
* *
14487493 ATATCCGAGCTAAGACCCGAAGGCAATTATGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGTT
*
14487533 ATATCCGGGTTAAGACCCGAAGGCAATTATGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGTT
14487573 ATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
14487598 TTCGTGCTTG
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 128 0.98
41 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGTT
Found at i:14491686 original size:44 final size:42
Alignment explanation
Indices: 14491594--14491694 Score: 114
Period size: 44 Copynumber: 2.4 Consensus size: 42
14491584 CCAAACAGAA
* * **
14491594 TCTTACACGAAATCAAATACGATGCCAACGTCCCAGATGTGG
1 TCTTACACGAAATCAAATACGATGCCAACATCCCAAACATGG
14491636 TCTTACACGTAAATACCAAAT-CGATGCCAACATCCCAAACATGG
1 TCTTACACG-AAAT--CAAATACGATGCCAACATCCCAAACATGG
* *
14491680 TTTTACACGATATCA
1 TCTTACACGAAATCA
14491695 CATATCAGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
41 2 0.04
42 9 0.18
43 7 0.14
44 27 0.54
45 5 0.10
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.24
Consensus pattern (42 bp):
TCTTACACGAAATCAAATACGATGCCAACATCCCAAACATGG
Found at i:14498782 original size:22 final size:19
Alignment explanation
Indices: 14498743--14498784 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
14498733 TATAAAGTTG
14498743 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
14498762 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
14498784 A
1 A
14498785 ATAACTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:14506106 original size:46 final size:46
Alignment explanation
Indices: 14506056--14506184 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
14506046 TGGTTGAGCA
*
14506056 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
14506102 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
14506148 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14506185 GCAGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:14518230 original size:29 final size:29
Alignment explanation
Indices: 14518196--14518327 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
14518186 TACTCAATTT
** * *
14518196 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
14518225 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
14518254 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
14518283 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
14518312 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
14518328 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:14526164 original size:29 final size:29
Alignment explanation
Indices: 14526130--14526261 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
14526120 TACTCGATTT
** * *
14526130 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
14526159 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
14526188 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
14526217 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
14526246 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
14526262 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:14536518 original size:16 final size:16
Alignment explanation
Indices: 14536497--14536536 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
14536487 TATTTTATGC
14536497 TATTTTCTT-AATATTT
1 TATTTT-TTCAATATTT
14536513 TATTTTTTCAATATTT
1 TATTTTTTCAATATTT
14536529 TAATTTTT
1 T-ATTTTT
14536537 AAATTATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.09
16 14 0.64
17 6 0.27
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTTTTTCAATATTT
Found at i:14536544 original size:17 final size:16
Alignment explanation
Indices: 14536506--14536545 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
14536496 CTATTTTCTT
* *
14536506 AATATTTTATTTTTTC
1 AATATTTTAATTTTTA
14536522 AATATTTTAATTTTTA
1 AATATTTTAATTTTTA
14536538 AATTATTT
1 AA-TATTT
14536546 GTTGTCATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
AATATTTTAATTTTTA
Found at i:14548134 original size:46 final size:46
Alignment explanation
Indices: 14548084--14548256 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
14548074 TGGTTGAGCA
*
14548084 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
14548130 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
14548177 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
14548223 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
14548257 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 62 0.58
47 29 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:14548240 original size:93 final size:93
Alignment explanation
Indices: 14548081--14548251 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
14548071 GGATGGTTGA
* *
14548081 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
14548146 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
14548174 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
14548239 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
14548252 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:14551812 original size:39 final size:40
Alignment explanation
Indices: 14551722--14551831 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
14551712 ATAACCACGT
*
14551722 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
14551762 GCACGAATGCCTTCGGGTCTTAG-CCGGAT-GTA-GCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
14551801 GCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
14551832 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
37 1 0.02
38 4 0.06
39 28 0.45
40 29 0.47
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:14560742 original size:38 final size:38
Alignment explanation
Indices: 14560689--14560822 Score: 150
Period size: 38 Copynumber: 3.6 Consensus size: 38
14560679 CGCACAAGCC
*
14560689 TCGGGACTTA-CCCGGATATCACGA-TGCACAAATGCCT
1 TCGGGTCTTAGCCCGGATAT-ACGACTGCACAAATGCCT
* *
14560726 TCGGGTCTTAGCCCGGATAAATGACTCGCAC-AATGCCT
1 TCGGGTCTTAGCCCGGATATACGACT-GCACAAATGCCT
* *
14560764 TCGGGTCTTAGCCCGGAT-TAGCCACTGCACAATTGCCT
1 TCGGGTCTTAGCCCGGATATA-CGACTGCACAAATGCCT
* *
14560802 TCGGGTCTTAACCCGGTTATA
1 TCGGGTCTTAGCCCGGATATA
14560823 ATTTCCAGCA
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
37 17 0.21
38 59 0.72
39 6 0.07
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.25
Consensus pattern (38 bp):
TCGGGTCTTAGCCCGGATATACGACTGCACAAATGCCT
Found at i:14569771 original size:80 final size:80
Alignment explanation
Indices: 14569687--14569835 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
14569677 TATGGTAACC
* * * *
14569687 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
14569751 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
14569767 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
14569832 CCGG
66 CCGG
14569836 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:14569777 original size:40 final size:38
Alignment explanation
Indices: 14569728--14569835 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
14569718 ATCACGATTT
*
14569728 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
14569768 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
14569808 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
14569836 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:14577333 original size:80 final size:80
Alignment explanation
Indices: 14577249--14577397 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
14577239 TATGGTAACC
* * * *
14577249 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
14577313 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
14577329 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
14577394 CCGG
66 CCGG
14577398 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:14577339 original size:40 final size:38
Alignment explanation
Indices: 14577290--14577397 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
14577280 ATCACGATTT
*
14577290 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
14577330 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
14577370 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
14577398 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:14583157 original size:22 final size:21
Alignment explanation
Indices: 14583127--14583192 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
14583117 TACAAATTAA
14583127 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
14583149 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
14583170 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
14583189 ATCT
1 ATCT
14583193 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:14583179 original size:19 final size:19
Alignment explanation
Indices: 14583144--14583241 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
14583134 AGATTACAAG
14583144 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
14583165 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14583184 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
14583201 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
14583220 ATCATATCTATGATTGCAT
1 ATCATATCTAAGATTGCAT
14583239 ATC
1 ATC
14583242 CTTAAAGATT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:14583186 original size:14 final size:15
Alignment explanation
Indices: 14583166--14583222 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
14583156 AGATTGCATA
14583166 TCATATCTAAGATTG
1 TCATATCTAAGATTG
14583181 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
14583200 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
14583217 -CATATC
1 TCATATC
14583223 ATATCTATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:14583208 original size:36 final size:37
Alignment explanation
Indices: 14583144--14583241 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
14583134 AGATTACAAG
14583144 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
14583184 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
*
14583220 ATCATATCTATGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
14583242 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:14584166 original size:219 final size:220
Alignment explanation
Indices: 14583568--14584327 Score: 1173
Period size: 220 Copynumber: 3.5 Consensus size: 220
14583558 TGTCATGTTG
* * * * * ** * **
14583568 ATGTTTTCGATCTTCTCTCCGTCGAATACAGAGATGTCAAATTTGCTACCTTCGATTCATTC-CT
1 ATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTG-TTTCTTCAATTTGTTCTC-
* * **
14583632 TGACAATACAGAGATGTCAAATCATCTTGGATCTGCTTTAGCGTAAACACCTGAACATCAGATCT
64 TGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCT
* * * * *
14583697 GCCATGTCTTCGATTTGCTCCTTGTAAACATAAGGATGCTAAATCATCTTGGATCTGCTTCAATG
129 GCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATG
* *
14583762 TGAAAATATCCAAAGGTTAGATCTGCT
194 TGAAAACATCCAAAGGTCAGATCTGCT
* * *
14583789 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTATTCAATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
* *
14583854 ACAATACAGAGATGACAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGC
14583919 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
14583984 AAAACATCCGAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
*
14584009 ATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCTTCGATTT-TTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
* *
14584073 ACAATATAGAGATGCCAAATCATCTTAGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGC
*
14584138 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
* * *
14584203 AAAACATCTAAAGGTCAAATCTTCT
196 AAAACATCCAAAGGTCAGATCTGCT
*
14584228 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
1 ATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
14584293 ACAATACAGAGATGCCAAATCATCTTGGATCTGCT
66 ACAATACAGAGATGCCAAATCATCTTGGATCTGCT
14584328 ATGTCTTCGA
Statistics
Matches: 496, Mismatches: 41, Indels: 5
0.92 0.08 0.01
Matches are distributed among these distances:
219 208 0.42
220 247 0.50
221 41 0.08
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (220 bp):
ATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
ACAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAGTGTAAACACCTGAAGGTCAGATCTGC
TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
AAAACATCCAAAGGTCAGATCTGCT
Found at i:14584183 original size:87 final size:89
Alignment explanation
Indices: 14584084--14584244 Score: 227
Period size: 89 Copynumber: 1.8 Consensus size: 89
14584074 CAATATAGAG
* * * * *
14584084 ATGCCAAATCATCTTAGATCTGCTT-TA-GTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTAGATCTACTTCGATGTGAAAACACCTAAAGGTCAAATCTGCTATGTCTTC
*
14584147 GATTTGCTCCTTGTAAACACAAGA
66 GATCTGCTCCTTGTAAACACAAGA
* * *
14584171 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCTAAAGGTCAAATCTTCTATGTCTTC
1 ATGCCAAATCATCTTAGATCTACTTCGATGTGAAAACACCTAAAGGTCAAATCTGCTATGTCTTC
14584236 GATCTGCTC
66 GATCTGCTC
14584245 TCCGTCGAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 23 0.37
88 1 0.02
89 39 0.62
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (89 bp):
ATGCCAAATCATCTTAGATCTACTTCGATGTGAAAACACCTAAAGGTCAAATCTGCTATGTCTTC
GATCTGCTCCTTGTAAACACAAGA
Found at i:14584451 original size:189 final size:189
Alignment explanation
Indices: 14584131--14584516 Score: 682
Period size: 189 Copynumber: 2.0 Consensus size: 189
14584121 CTGAAGGTCA
14584131 GATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTT
1 GATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTT
* * *
14584196 CGATGTGAAAACATCTAAAGGTCAAATCTTCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAG
66 CGATGTGAAAACATCCAAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAG
* *
14584261 ATGCCAAATCTGTTTCTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
131 ATGCCAAAGCTGTTTCTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTG
* *
14584320 GATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATTCCAAATCATCTTGGATCTGCTT
1 GATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTT
*
14584385 CGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAG
66 CGATGTGAAAACATCCAAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAG
* *
14584450 ATGCTAAAGCTGTTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTG
131 ATGCCAAAGCTGTTTCTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTG
14584509 GATCTGCT
1 GATCTGCT
14584517 TCAGCGTGAA
Statistics
Matches: 187, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
189 187 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (189 bp):
GATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTT
CGATGTGAAAACATCCAAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAG
ATGCCAAAGCTGTTTCTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTG
Found at i:14584675 original size:44 final size:44
Alignment explanation
Indices: 14584607--14584708 Score: 161
Period size: 44 Copynumber: 2.3 Consensus size: 44
14584597 ATCTGCTCCA
* *
14584607 CTACTGCTTA-GGGAGATAAAATCTGCAATTTTGACCTGTTACC
1 CTACTGCTTAGGGGAGATAAAATCTGCAAATTTAACCTGTTACC
* *
14584650 CTGCTGCTTAGGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGGAGATAAAATCTGCAAATTTAACCTGTTACC
14584694 CTACTGCTTAGGGGA
1 CTACTGCTTAGGGGA
14584709 TTAAGGCGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 9 0.17
44 44 0.83
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (44 bp):
CTACTGCTTAGGGGAGATAAAATCTGCAAATTTAACCTGTTACC
Found at i:14585667 original size:1 final size:1
Alignment explanation
Indices: 14585661--14585722 Score: 79
Period size: 1 Copynumber: 62.0 Consensus size: 1
14585651 GGCCTCTCCA
* * * * *
14585661 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTCTCTTTTTCTTTCTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14585723 GAAATAGAAG
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.02, C:0.06, G:0.00, T:0.92
Consensus pattern (1 bp):
T
Found at i:14596952 original size:20 final size:20
Alignment explanation
Indices: 14596927--14596964 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14596917 GTTTATTCGC
*
14596927 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
14596947 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
14596965 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:14598625 original size:28 final size:28
Alignment explanation
Indices: 14598593--14598661 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
14598583 GCGTAGATCA
14598593 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
14598621 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
14598649 CGATA-TACCCCTA
1 CGAAATTACCCCTA
14598662 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:14603159 original size:49 final size:50
Alignment explanation
Indices: 14603094--14603220 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 50
14603084 AAGTCGATGG
* *
14603094 CATGTCCCAGACATGGTCTTACACTGACTATTGA-A-ATC-GAGGCCAACGT
1 CATGTCCCAGACATGGTCTTACACTGACT-TTCACATATCTG-GGCCAACGC
* * * *
14603143 CATGTCCCAGACATGGTCTTACGCT-AGCTTTCACATATCTGTGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGA-CTTTCACATATCTGGGCCAACGC
14603193 CATGTCCCAGACATGGTCTTACACTGAC
1 CATGTCCCAGACATGGTCTTACACTGAC
14603221 ACATCTCGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
48 4 0.06
49 27 0.41
50 33 0.50
51 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (50 bp):
CATGTCCCAGACATGGTCTTACACTGACTTTCACATATCTGGGCCAACGC
Found at i:14603318 original size:46 final size:46
Alignment explanation
Indices: 14603041--14603403 Score: 179
Period size: 46 Copynumber: 7.7 Consensus size: 46
14603031 GGTATAATGT
* *
14603041 CGATGCCATGTCCTAGACATGGTCTTACACTAG--CTCATCCATC-AAGT
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCAT-C-TCGAGGC
* * * **
14603088 CGATGGCATGTCCCAGACATGGTCTTACACT-GACTATTGAAATCGAGGC
1 CGAT-GCATGTCCTAGACAT-GTCTTACACTAG-CT-CTCATCTCGAGGC
* * * * * * *
14603137 CAACGTCATGTCCCAGACATGGTCTTACGCTAGCTTTCACATATCTG-TGC
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAGC--TCTCATCTC-GAGGC
* * *
14603187 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-GC
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCATCTCG-AGGC
* * * *
14603233 TGATGCAAGTCCTAGAAATGTCTTACACTGGCT-TACATCTCGAGGC
1 CGATGCATGTCCTAGACATGTCTTACACTAGCTCT-CATCTCGAGGC
* * **
14603279 CGATGCATGTCCTAGACATGTATTACACTAGCTCTCATCTCAACAC
1 CGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATCTCGAGGC
* * * * *
14603325 CAATGCCATGTTCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCAT-CTCGAGGC
* * *
14603373 CGATGCTTGTCCCAGACATGTCGTACACTAG
1 CGATGCATGTCCTAGACATGTCTTACACTAG
14603404 TACACAAATA
Statistics
Matches: 245, Mismatches: 50, Indels: 43
0.72 0.15 0.13
Matches are distributed among these distances:
44 10 0.04
45 14 0.06
46 73 0.30
47 53 0.22
48 26 0.11
49 31 0.13
50 36 0.15
51 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATCTCGAGGC
Found at i:14605688 original size:27 final size:26
Alignment explanation
Indices: 14605644--14605695 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
14605634 CTCGCTGCAA
*
14605644 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
14605671 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
14605696 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:14605778 original size:27 final size:26
Alignment explanation
Indices: 14605736--14605795 Score: 111
Period size: 27 Copynumber: 2.3 Consensus size: 26
14605726 ACATATACAT
14605736 ATATCTGTTCTGGTGACTTCGTCACA
1 ATATCTGTTCTGGTGACTTCGTCACA
14605762 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACTTCGTCACA
14605789 ATATCTG
1 ATATCTG
14605796 GCAGCTTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 8 0.24
27 25 0.76
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACTTCGTCACA
Found at i:14609144 original size:50 final size:51
Alignment explanation
Indices: 14609006--14609145 Score: 140
Period size: 50 Copynumber: 2.8 Consensus size: 51
14608996 ATTGGTCGCA
* * * *
14609006 TGTGTAGTACTAAGTGTAGGCTACTATCCGTACCCGATAACTTCGATTACG
1 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATAACTTAGATCACG
* * * ** * *
14609057 TGTGTAGTACTAAGTGTAGGCTGCTACGTC-TATCAGAT-GGTTAGGTCATG
1 TGTGTAGTACTAAGTGTAGGCTACTATG-CGTACCAGATAACTTAGATCACG
* *
14609107 TGTGTAGTACTAAATGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
14609146 GCCTTGTCTA
Statistics
Matches: 70, Mismatches: 16, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
49 1 0.01
50 37 0.53
51 31 0.44
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATAACTTAGATCACG
Found at i:14615037 original size:43 final size:46
Alignment explanation
Indices: 14614983--14615100 Score: 163
Period size: 45 Copynumber: 2.7 Consensus size: 46
14614973 CGGGCTTCGG
* *
14614983 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TC-AGGCTTTGA
1 GCCTAGAAGGCTATAATGCCGGTGAAATGATTATTCGAGCCTTTGA
* * *
14615026 GCTTAGTAGGCTATGATGCCGGTGAAAT-ATTATTCGAGCCTTTGA
1 GCCTAGAAGGCTATAATGCCGGTGAAATGATTATTCGAGCCTTTGA
14615071 GCCTAGAAGGCTATAATGCCGGTGAAATGA
1 GCCTAGAAGGCTATAATGCCGGTGAAATGA
14615101 AATGTTATGT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.02
43 27 0.42
44 2 0.03
45 33 0.52
46 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (46 bp):
GCCTAGAAGGCTATAATGCCGGTGAAATGATTATTCGAGCCTTTGA
Found at i:14615448 original size:38 final size:38
Alignment explanation
Indices: 14615406--14615562 Score: 215
Period size: 38 Copynumber: 4.1 Consensus size: 38
14615396 ATGCTAGAAT
*
14615406 TATATCCAGGTTAAATCCCGCAGGGTTCGTGCTGGTAA
1 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * *
14615444 TATATCCAGGCTAAATCCCGTAGGCTTCATGCTGGTAA
1 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * *
14615482 TATATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * * *
14615520 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
14615558 TATAT
1 TATAT
14615563 TCGGGCCTTT
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 106 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (38 bp):
TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
Found at i:14615610 original size:45 final size:45
Alignment explanation
Indices: 14615560--14615685 Score: 200
Period size: 45 Copynumber: 2.8 Consensus size: 45
14615550 GCTGGTATTA
*
14615560 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * *
14615605 TATTCGGGCCTTTGGGCCGAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
14615650 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCG
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCG
14615686 ATGAAATGAT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
44 4 0.05
45 70 0.95
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:14618881 original size:20 final size:21
Alignment explanation
Indices: 14618845--14618889 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
14618835 AGCTTCAAAC
14618845 CTTTAATTTTCCCTTTTC-TT
1 CTTTAATTTTCCCTTTTCTTT
*
14618865 CTTT-ATTTTCTCTTTTTCTTT
1 CTTTAATTTTC-CCTTTTCTTT
14618886 CTTT
1 CTTT
14618890 CCTTCCGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 10 0.45
21 6 0.27
ACGTcount: A:0.07, C:0.22, G:0.00, T:0.71
Consensus pattern (21 bp):
CTTTAATTTTCCCTTTTCTTT
Found at i:14622356 original size:16 final size:15
Alignment explanation
Indices: 14622320--14622374 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
14622310 AATAATGTGA
14622320 ATAATAATATACATG
1 ATAATAATATACATG
*
14622335 AAAATATATATA-ATAG
1 ATAATA-ATATACAT-G
*
14622351 ATAATAATA-ATATG
1 ATAATAATATACATG
14622365 A-AATAATATA
1 ATAATAATATA
14622375 TTGTTAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
13 7 0.21
14 4 0.12
15 12 0.35
16 11 0.32
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (15 bp):
ATAATAATATACATG
Found at i:14622402 original size:8 final size:8
Alignment explanation
Indices: 14622389--14622554 Score: 61
Period size: 8 Copynumber: 21.9 Consensus size: 8
14622379 TAAAATGTAA
14622389 AATAATAT
1 AATAATAT
14622397 AATAATAT
1 AATAATAT
*
14622405 AAAAATAT
1 AATAATAT
14622413 -ATAA-AT
1 AATAATAT
* *
14622419 -ATTATGT
1 AATAATAT
* *
14622426 GATAAAAT
1 AATAATAT
*
14622434 -ATGATAT
1 AATAATAT
14622441 AATAA-AT
1 AATAATAT
*
14622448 AATAA-GT
1 AATAATAT
*
14622455 AATGATAT
1 AATAATAT
** *
14622463 -ATGTTAA
1 AATAATAT
14622470 AAT-ATAT
1 AATAATAT
*
14622477 ATTAATAT
1 AATAATAT
* *
14622485 GATAATAG
1 AATAATAT
*
14622493 AAAAATAT
1 AATAATAT
*
14622501 GAAGTAATAC
1 -AA-TAATAT
14622511 AAT-ATAAT
1 AATAAT-AT
14622519 AA-AATAT
1 AATAATAT
14622526 AAGTAA-AT
1 AA-TAATAT
14622534 AATAATAT
1 AATAATAT
14622542 AA-AATAT
1 AATAATAT
14622549 -ATAATA
1 AATAATA
14622555 CATATATAAA
Statistics
Matches: 117, Mismatches: 27, Indels: 29
0.68 0.16 0.17
Matches are distributed among these distances:
6 6 0.05
7 48 0.41
8 53 0.45
9 6 0.05
10 4 0.03
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.34
Consensus pattern (8 bp):
AATAATAT
Found at i:14622534 original size:25 final size:24
Alignment explanation
Indices: 14622493--14622552 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
14622483 ATGATAATAG
14622493 AAAAATATGAAGTAAT-ACAATATA
1 AAAAATAT-AAGTAATAACAATATA
*
14622517 ATAAAATATAAGTAAATAATAATATA
1 A-AAAATATAAGT-AATAACAATATA
*
14622543 AAATATATAA
1 AAAAATATAA
14622553 TACATATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 5 0.16
25 18 0.58
26 8 0.26
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (24 bp):
AAAAATATAAGTAATAACAATATA
Found at i:14622543 original size:23 final size:24
Alignment explanation
Indices: 14622392--14622549 Score: 83
Period size: 26 Copynumber: 6.2 Consensus size: 24
14622382 AATGTAAAAT
*
14622392 AATATAA-TAATATAAAAATATATA
1 AATATAAGTAATATAATAATATA-A
* * *
14622416 AATATTATGTGATAAAATATGATATAATA
1 AATA-TAAGTAATATAATA--ATAT-A-A
*
14622445 AATAATAAGTAATGAT-AT-ATGTTAA
1 AAT-ATAAGTAAT-ATAATAAT-ATAA
* * *
14622470 AATATATATTAATATGATAATAGAAA
1 AATATA-AGTAATATAATAATA-TAA
*
14622496 AATATGAAGTAATACAAT-ATAATAA
1 AATAT-AAGTAATATAATAAT-ATAA
14622521 AATATAAGTAA-ATAATAATATAA
1 AATATAAGTAATATAATAATATAA
14622544 AATATA
1 AATATA
14622550 TAATACATAT
Statistics
Matches: 103, Mismatches: 16, Indels: 31
0.69 0.11 0.21
Matches are distributed among these distances:
23 14 0.14
24 17 0.17
25 22 0.21
26 28 0.27
27 2 0.02
28 4 0.04
29 14 0.14
30 2 0.02
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.34
Consensus pattern (24 bp):
AATATAAGTAATATAATAATATAA
Found at i:14622563 original size:25 final size:24
Alignment explanation
Indices: 14622505--14622578 Score: 70
Period size: 23 Copynumber: 3.3 Consensus size: 24
14622495 AAATATGAAG
14622505 TAATACA-ATAT-AATAAAATATA
1 TAATACATATATAAATAAAATATA
* *
14622527 -AGTAAATA-ATAATATAAAATATA
1 TAATACATATATAA-ATAAAATATA
*
14622550 TAATACATATATAAA-AGAATATA
1 TAATACATATATAAATAAAATATA
14622573 T-ATACA
1 TAATACA
14622579 ATTTAAAATA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
21 6 0.14
22 7 0.17
23 18 0.43
24 7 0.17
25 4 0.10
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (24 bp):
TAATACATATATAAATAAAATATA
Found at i:14622585 original size:21 final size:23
Alignment explanation
Indices: 14622544--14622586 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
14622534 AATAATATAA
14622544 AATATATAATACATATATAAAAG
1 AATATATAATACATATATAAAAG
*
14622567 AATATAT-ATACA-ATTTAAAA
1 AATATATAATACATATATAAAA
14622587 TAAATAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 5 0.26
23 7 0.37
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (23 bp):
AATATATAATACATATATAAAAG
Found at i:14629775 original size:43 final size:43
Alignment explanation
Indices: 14629701--14629822 Score: 183
Period size: 43 Copynumber: 2.8 Consensus size: 43
14629691 CTAAATTCAT
* * * *
14629701 TCACTGGCATTAT-GCCTGCTACGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATTAAA
*
14629743 TCACCGGCATTATAGCCTGCTAGGCTTAAAGCCCGATATTAAA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATTAAA
14629786 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGA
14629823 ATAGCACTGT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
42 12 0.17
43 54 0.75
44 6 0.08
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATTAAA
Found at i:14648796 original size:48 final size:47
Alignment explanation
Indices: 14648721--14649056 Score: 348
Period size: 48 Copynumber: 7.0 Consensus size: 47
14648711 ACACATATTG
14648721 ATGCCGATGCCATATCCCAGATATGGTCTTACACTGGCTCTCATAATA
1 ATGCCGATGCCATA-CCCAGATATGGTCTTACACTGGCTCTCATAATA
* * *
14648769 ATGTCGATGCCATACCTCAGATATGGTCTTACATTGGCTCACATAATA
1 ATGCCGATGCCATACC-CAGATATGGTCTTACACTGGCTCTCATAATA
* * * * * *
14648817 ATGTCAATACCATATCCTAGATATGGTCTTACACTGGCTCACATCATA
1 ATGCCGATGCCATA-CCCAGATATGGTCTTACACTGGCTCTCATAATA
* * * * *
14648865 ATGTCGATGCCATGTCCCAGACATGGCCTTACACTAGCTCTCATAATA
1 ATGCCGATGCCAT-ACCCAGATATGGTCTTACACTGGCTCTCATAATA
*
14648913 ATGCCAATGCCATATCCCAGATATGGTCTTACACTGGCTCTCATAATA
1 ATGCCGATGCCATA-CCCAGATATGGTCTTACACTGGCTCTCATAATA
* ** * * * *
14648961 ATGCCAATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATACATCG
1 ATGCCGATGCCAT-ACCCAGATATGGTCTTACACTGGCTCTCATA-AT-A
* * * * *
14649011 GTGCCGATACCATGTCCCAGACATGGTCTTACACTGGCTCACATAA
1 ATGCCGATGCCAT-ACCCAGATATGGTCTTACACTGGCTCTCATAA
14649057 CAGCAGTGTC
Statistics
Matches: 245, Mismatches: 36, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
47 2 0.01
48 200 0.82
49 5 0.02
50 38 0.16
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (47 bp):
ATGCCGATGCCATACCCAGATATGGTCTTACACTGGCTCTCATAATA
Done.