Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 51 of 292
Found at i:14648876 original size:96 final size:95
Alignment explanation
Indices: 14648721--14649056 Score: 404
Period size: 96 Copynumber: 3.5 Consensus size: 95
14648711 ACACATATTG
* * *
14648721 ATGCCGATGCCATATCCCAGATATGGTCTTACACTGGCTCTCATAATAATGTCGATGCCATACCT
1 ATGCCAATACCATATCCCAGATATGGTCTTACACTGGCTCACATAATAATGTCGATGCCAT-CCT
* * * *
14648786 CAGATATGGTCTTACATTGGCTCACATAATA
65 CAGACATGGTCTTACACTAGCTCTCATAATA
* * *
14648817 ATGTCAATACCATATCCTAGATATGGTCTTACACTGGCTCACATCATAATGTCGATGCCATGTCC
1 ATGCCAATACCATATCCCAGATATGGTCTTACACTGGCTCACATAATAATGTCGATGCCA--TCC
*
14648882 -CAGACATGGCCTTACACTAGCTCTCATAATA
64 TCAGACATGGTCTTACACTAGCTCTCATAATA
* * * * **
14648913 ATGCCAATGCCATATCCCAGATATGGTCTTACACTGGCTCTCATAATAATGCCAATGCCATGTTC
1 ATGCCAATACCATATCCCAGATATGGTCTTACACTGGCTCACATAATAATGTCGATGCCATCCT-
* *
14648978 CAAACATGGTCTTACACTAGCTCTCATACATCG
65 CAGACATGGTCTTACACTAGCTCTCATA-AT-A
* * * *
14649011 GTGCCGATACCATGTCCCAGACATGGTCTTACACTGGCTCACATAA
1 ATGCCAATACCATATCCCAGATATGGTCTTACACTGGCTCACATAA
14649057 CAGCAGTGTC
Statistics
Matches: 205, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
94 1 0.00
96 159 0.78
97 4 0.02
98 41 0.20
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (95 bp):
ATGCCAATACCATATCCCAGATATGGTCTTACACTGGCTCACATAATAATGTCGATGCCATCCTC
AGACATGGTCTTACACTAGCTCTCATAATA
Found at i:14648987 original size:144 final size:146
Alignment explanation
Indices: 14648721--14649056 Score: 446
Period size: 144 Copynumber: 2.3 Consensus size: 146
14648711 ACACATATTG
* * * *
14648721 ATGCCGATGCCATATCCCAGATATGGTCTTACACTGGCTCTCATAATAATGTCGATGCCATACCT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATAATGCCAATGCCATACCT
* * * *
14648786 CAGATATGGTCTTACATTGGCTCACATAATAATGTCAATACCATATCCTAGATATGGTCTTACAC
66 CAGATATGGTCTTACACTGGCTCACATAATAATGCCAATACCATATCCTAAACATGGTCTTACAC
*
14648851 TGGCTCACAT-CAT-A
131 TAGCTCACATACATCA
* * *
14648865 ATGTCGATGCCATGTCCCAGACATGGCCTTACACTAGCTCTCATAATAATGCCAATGCCATATCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATAATGCCAATGCCATA-CC
* * *
14648930 -CAGATATGGTCTTACACTGGCTCTCATAATAATGCCAATGCCATGTTCC-AAACATGGTCTTAC
65 TCAGATATGGTCTTACACTGGCTCACATAATAATGCCAATACCAT-ATCCTAAACATGGTCTTAC
* *
14648993 ACTAGCTCTCATACATCG
129 ACTAGCTCACATACATCA
* * *
14649011 GTGCCGATACCATGTCCCAGACATGGTCTTACACTGGCTCACATAA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAA
14649057 CAGCAGTGTC
Statistics
Matches: 165, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
144 117 0.71
145 8 0.05
146 40 0.24
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (146 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATAATGCCAATGCCATACCT
CAGATATGGTCTTACACTGGCTCACATAATAATGCCAATACCATATCCTAAACATGGTCTTACAC
TAGCTCACATACATCA
Found at i:14656348 original size:27 final size:27
Alignment explanation
Indices: 14656240--14656547 Score: 319
Period size: 27 Copynumber: 11.6 Consensus size: 27
14656230 TTAGTTTACC
* *
14656240 AAATTACTGAAATACCC-CCAGTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
14656266 AAATTAC-CAAAGTA-CCACGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * *
14656292 AAATTACCGAAATATCATCG--TTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
14656317 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
14656344 AAATTACCGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
14656371 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
14656398 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
14656425 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** * *
14656452 AAATTACCCAAATATCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
14656479 AAATTA-TCAAAATACCCTC-AGTTTGCA
1 AAATTACT-GAAATACCCTCGA-TTTGTA
14656506 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
14656533 AAATTACTGAAATAC
1 AAATTACTGAAATAC
14656548 TCCTGTAAGA
Statistics
Matches: 235, Mismatches: 33, Indels: 27
0.80 0.11 0.09
Matches are distributed among these distances:
25 25 0.11
26 29 0.12
27 174 0.74
28 7 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:14656392 original size:54 final size:54
Alignment explanation
Indices: 14656240--14656846 Score: 337
Period size: 54 Copynumber: 11.3 Consensus size: 54
14656230 TTAGTTTACC
* * * * * * *
14656240 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTA-CCACGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTA
* *
14656292 AAATTACCGAAATATCATCG--TTGTAAAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTA
* *
14656344 AAATTACCGAAATACCCTC-AGTTTGCAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCTCGATTTGTA
* * * * * *
14656398 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTA
* * * *
14656452 AAATTACCCAAATATCCTTGATTTGTAAAATTA-TCAAAATACCCTC-AGTTTGCA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACT-AAAATACCCTCGA-TTTGTA
* * **
14656506 AAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACTCCT-G-TAAGATA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATAC-CCTCGATTTG-TA
* ** ** * ** *
14656560 GAATTACC-ATTTTACCCTCGATTTACAGAATTATCGT--TTTACCCTCGATTTATA
1 AAATTACCGA-AATACCCTCGATTTGTAAAATTA-C-TAAAATACCCTCGATTTGTA
* ** * * * *** * **
14656614 GAATTACC-ATTTTACCCTCGATTTATAGAATTACCATTTTATCCTCGATTTACA
1 AAATTACCGA-AATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTA
* *** * ** * * *** **
14656668 GAATTACCGTCTTATCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTA
* * * ** * ***
14656722 AAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAATA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTA
* * * * *
14656776 AAATTACCAAAATACCC-CTAGTTTATAAAA-TACCAAAATACCC-CTGATTTGTG
1 AAATTACCGAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCTC-GATTTGTA
14656829 AAATTACCGAAATACCCT
1 AAATTACCGAAATACCCT
14656847 TGTAGGGTAG
Statistics
Matches: 447, Mismatches: 85, Indels: 44
0.78 0.15 0.08
Matches are distributed among these distances:
51 17 0.04
52 42 0.09
53 42 0.09
54 338 0.76
55 7 0.02
56 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTA
Found at i:14656411 original size:81 final size:81
Alignment explanation
Indices: 14656240--14656846 Score: 348
Period size: 81 Copynumber: 7.6 Consensus size: 81
14656230 TTAGTTTACC
* * * *
14656240 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTA-CCACGATTTATAAAATTACCGAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCGAA
* *
14656303 ATATCATCG--TTGTA
66 ATACCCTCGATTTGTA
** *
14656317 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAA-TACCCTC-AGTTTGCAAAATTACTG
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACC-AAAGTACCCTCGA-TTTATAAAATTACCG
14656380 AAATACCCTCGATTTGTA
64 AAATACCCTCGATTTGTA
* * * *
14656398 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCGAA
* *
14656463 ATATCCTTGATTTGTA
66 ATACCCTCGATTTGTA
* * * *
14656479 AAATTA-TCAAAATACCCTC-AGTTTGCAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACT
1 AAATTACT-AAAATACCCTCGA-TTTGTAAAATTAC-CAAAGTACCCTCGATTTATAAAATTACC
**
14656541 GAAATACTCCT-G-TAAGATA
63 GAAATAC-CCTCGATTTG-TA
* * *** ** * * **** *
14656560 GAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACC-AT
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCGA-
** *
14656624 TTTACCCTCGATTTATA
65 AATACCCTCGATTTGTA
* * *** * ** * **** * * *
14656641 GAATTACCATTTTATCCTCGATTTACAGAATTACCGTCTTATCCTCGATTTACAGAATTACC-AT
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCGA-
** **
14656705 TTTACCCTCGATTTACA
65 AATACCCTCGATTTGTA
* * * ** * ** *
14656722 AAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCGAA
* *
14656787 ATACCC-CTAGTTTATA
66 ATACCCTCGA-TTTGTA
* *
14656803 AAA-TACCAAAATACCC-CTGATTTGTGAAATTACCGAAA-TACCCT
1 AAATTACTAAAATACCCTC-GATTTGTAAAATTACC-AAAGTACCCT
14656847 TGTAGGGTAG
Statistics
Matches: 422, Mismatches: 85, Indels: 43
0.77 0.15 0.08
Matches are distributed among these distances:
77 16 0.04
78 18 0.04
79 27 0.06
80 42 0.10
81 309 0.73
82 10 0.02
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCGAA
ATACCCTCGATTTGTA
Found at i:14656737 original size:27 final size:27
Alignment explanation
Indices: 14656265--14656846 Score: 279
Period size: 27 Copynumber: 21.7 Consensus size: 27
14656255 CCCCAGTTGT
* * *
14656265 AAAATTACCAAAGTA-CCACGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* * *
14656291 AAAATTACCGAAATATCATCG-TTGT--
1 AAAATTACCAAAATACCCTCGATT-TAC
* **
14656316 AAAATTACTAAAATACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* *
14656343 AAAATTACCGAAATACCCTC-AGTTTGC
1 AAAATTACCAAAATACCCTCGA-TTTAC
** **
14656370 AAAATTACTGAAATACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
** * **
14656397 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * *
14656424 AAAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* * * **
14656451 AAAATTACCCAAATATCCTTGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* *
14656478 AAAATTATCAAAATACCCTC-AGTTTGC
1 AAAATTACCAAAATACCCTCGA-TTTAC
** **
14656505 AAAATTACTGAAATACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
** * *
14656532 AAAATTACTGAAATACTCCT-G--TAAG
1 AAAATTACCAAAATAC-CCTCGATTTAC
***
14656557 ATAGAATTACCATTTTACCCTCGATTTAC
1 A-A-AATTACCAAAATACCCTCGATTTAC
* * **** *
14656586 AGAATTATCGTTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
14656613 AGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
14656640 AGAATTACCATTTTATCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* **** *
14656667 AGAATTACCGTCTTATCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ***
14656694 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
** * *
14656721 AAAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
** *
14656748 AAAATTACCAAAATACCCTCGATCAAT
1 AAAATTACCAAAATACCCTCGATTTAC
* *
14656775 AAAATTACCAAAATACCC-CTAGTTTAT
1 AAAATTACCAAAATACCCTCGA-TTTAC
**
14656802 AAAA-TACCAAAATACCC-CTGATTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
* *
14656828 GAAATTACCGAAATACCCT
1 AAAATTACCAAAATACCCT
14656847 TGTAGGGTAG
Statistics
Matches: 457, Mismatches: 80, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
25 20 0.04
26 46 0.10
27 383 0.84
28 5 0.01
29 3 0.01
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:14656860 original size:27 final size:27
Alignment explanation
Indices: 14656830--14657239 Score: 533
Period size: 27 Copynumber: 15.3 Consensus size: 27
14656820 TGATTTGTGA
*
14656830 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
14656857 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14656884 AATTA-CTAGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
14656911 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14656938 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
14656965 AATTATC-ACAATACCCCTGTATGGTGG
1 AATTACCGA-AATACCCCTGTAGGGTAG
14656992 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14657019 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14657046 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
14657073 AATTATC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
14657100 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
14657127 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
14657154 AATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
14657181 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
14657208 AATTACCGAGATA-CCTTGTGGGGTA-
1 AATTACCGAAATACCCCTGTAGGGTAG
14657233 AATTACC
1 AATTACC
14657240 ATTTTGCCCC
Statistics
Matches: 338, Mismatches: 39, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
25 7 0.02
26 11 0.03
27 319 0.94
28 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:14657686 original size:6 final size:6
Alignment explanation
Indices: 14657648--14657773 Score: 80
Period size: 6 Copynumber: 20.3 Consensus size: 6
14657638 TTGCATTCAC
* * *
14657648 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
14657698 -TTACTTG ATACTG ATTTTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
14657748 ATTCTG ATTCTA ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
14657774 AATGTTTCTT
Statistics
Matches: 93, Mismatches: 15, Indels: 24
0.70 0.11 0.18
Matches are distributed among these distances:
5 6 0.06
6 70 0.75
7 14 0.15
8 3 0.03
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:14657694 original size:31 final size:31
Alignment explanation
Indices: 14657648--14657758 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
14657638 TTGCATTCAC
*
14657648 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* *
14657680 ATTCTGATTTTGATTCTGTTACTTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * *
14657711 ATTTTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
14657742 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
14657759 AATTCTAGTT
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 64 0.90
32 7 0.10
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:14657712 original size:19 final size:19
Alignment explanation
Indices: 14657659--14657713 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 19
14657649 TTCTGATTTT
*
14657659 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACTTGATAC
14657678 TGATTCTG--A-TT--T--
1 TGATTCTGTTACTTGATAC
14657690 TGATTCTGTTACTTGATAC
1 TGATTCTGTTACTTGATAC
14657709 TGATT
1 TGATT
14657714 TTGATTCTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 14
0.65 0.02 0.33
Matches are distributed among these distances:
12 8 0.29
14 2 0.07
15 2 0.07
16 1 0.04
17 2 0.07
19 13 0.46
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.49
Consensus pattern (19 bp):
TGATTCTGTTACTTGATAC
Found at i:14657782 original size:24 final size:24
Alignment explanation
Indices: 14657733--14657789 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
14657723 ATTCTGTCAC
**
14657733 CTAATTCTGATTCTGATTCTGATT
1 CTAATTCTGATTCTGATAATGATT
*
14657757 CTAATTCT-AGTTCTGATAATGTTT
1 CTAATTCTGA-TTCTGATAATGATT
*
14657781 CTTATTCTG
1 CTAATTCTG
14657790 TAATGGGTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 1 0.04
24 26 0.96
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (24 bp):
CTAATTCTGATTCTGATAATGATT
Found at i:14663044 original size:30 final size:29
Alignment explanation
Indices: 14663004--14663063 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
14662994 CTAAGGTGCA
*
14663004 GGGGACACACGGCCTAAACACATGCCCGT
1 GGGGACACACGGCCTAAACACAAGCCCGT
* *
14663033 GGGGCACACACGGTCTAGACACAAGCCCGT
1 GGGG-ACACACGGCCTAAACACAAGCCCGT
14663063 G
1 G
14663064 TGCCTACCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.27, C:0.33, G:0.30, T:0.10
Consensus pattern (29 bp):
GGGGACACACGGCCTAAACACAAGCCCGT
Found at i:14674570 original size:20 final size:21
Alignment explanation
Indices: 14674545--14674583 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14674535 TTCTTGAAAC
14674545 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
14674565 AGGGCAACATGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
14674584 ATCCTTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.21, C:0.28, G:0.38, T:0.13
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:14676600 original size:193 final size:195
Alignment explanation
Indices: 14676215--14676604 Score: 443
Period size: 193 Copynumber: 2.0 Consensus size: 195
14676205 GTACTAAATT
* * * * * *
14676215 ATGTCAAAATTTAAGGTATAGAGATTAAATTTCAAATATGAGCATAGTACAATGACTAAAACTAA
1 ATGTCAAAAATTAAAGTACAGAGATCAAATTTCAAATATGAGCATAGTACAAGGACCAAAACTAA
* * * ** *
14676280 AATTTGATCGTTGTTATATAATCTAAAAAGATATTAAAAGCTTTACAACTGTTTCGTGTTCCTTT
66 AATTTGATCATTGTTATATAATCTAAAAAGATATAAAAAGCTTTACAACTGTTTCATGGGCATTT
*** * *
14676345 TATACATAAAGTATAGAATTTTATTGGTGCTAACAATTCTTTAAAAAAATCACATAAACATTTTA
131 TATACATAAAGTATAGAATTTTAACAGTACTAACAATTCATTAAAAAAATCACATAAACATTTTA
*** *
14676410 ATGTCAAAAATTAAAGTACAGAGATCAAATTTC-AA-ATGAGCATAGTATTGGGACCAAAATTAA
1 ATGTCAAAAATTAAAGTACAGAGATCAAATTTCAAATATGAGCATAGTACAAGGACCAAAACTAA
* *
14676473 AATTTGATCATTTTTATATAATCTAAAAA-ATATAAAAAGCTTTACAAGTGTTT-ATGAGGCATT
66 AATTTGATCATTGTTATATAATCTAAAAAGATATAAAAAGCTTTACAACTGTTTCATG-GGCATT
* * * *
14676536 CATTATCCATGAAGAGTATAGAATTTTAACAGTACTAA-AATT-ATT-AAAAATTTACATCAACA
130 --TTATACAT-AA-AGTATAGAATTTTAACAGTACTAACAATTCATTAAAAAAATCACATAAACA
14676598 TTTTA
191 TTTTA
14676603 AT
1 AT
14676605 CAGAATAAAT
Statistics
Matches: 163, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
191 2 0.01
192 25 0.15
193 70 0.43
194 11 0.07
195 35 0.21
196 20 0.12
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (195 bp):
ATGTCAAAAATTAAAGTACAGAGATCAAATTTCAAATATGAGCATAGTACAAGGACCAAAACTAA
AATTTGATCATTGTTATATAATCTAAAAAGATATAAAAAGCTTTACAACTGTTTCATGGGCATTT
TATACATAAAGTATAGAATTTTAACAGTACTAACAATTCATTAAAAAAATCACATAAACATTTTA
Found at i:14676620 original size:18 final size:19
Alignment explanation
Indices: 14676597--14676637 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
14676587 TTACATCAAC
14676597 ATTTTAATCAGAAT-AAAT
1 ATTTTAATCAGAATAAAAT
*
14676615 ATTTTAATCGGAATAAAAT
1 ATTTTAATCAGAATAAAAT
14676634 ATTT
1 ATTT
14676638 GGACTAGCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.41
Consensus pattern (19 bp):
ATTTTAATCAGAATAAAAT
Found at i:14677462 original size:21 final size:21
Alignment explanation
Indices: 14677437--14677478 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14677427 GTTTTAGCTA
* *
14677437 TTTGAATTGGTTAATAATATT
1 TTTGAACTCGTTAATAATATT
14677458 TTTGAACTCGTTAATAATATT
1 TTTGAACTCGTTAATAATATT
14677479 ATAAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (21 bp):
TTTGAACTCGTTAATAATATT
Found at i:14689383 original size:40 final size:40
Alignment explanation
Indices: 14689285--14689506 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
14689275 CGGTTGATAA
* * *
14689285 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTACA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
14689324 CCGGGCTAAG-CCCGAAGGCATTTATGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
14689363 CCGGGTTAAGTCCCGAAGGCATTTGTGC-AGTTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TTACTAAAT
* * * *
14689403 CCAGGCTAAG-CCCGAAGACAATTGTGCGAGTTACTAAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
14689442 CCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
* *
14689482 CTGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
14689507 AACGAGTGGC
Statistics
Matches: 155, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
38 24 0.15
39 52 0.34
40 78 0.50
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:14689489 original size:79 final size:80
Alignment explanation
Indices: 14689285--14689499 Score: 269
Period size: 79 Copynumber: 2.7 Consensus size: 80
14689275 CGGTTGATAA
* * * *
14689285 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-T-TACACCGGGCTAAGCCCGAAGGCATTTA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACACCGGGCTAAGCCCGAAGACAATTA
14689348 TGCGAGTTACTAAAT
66 TGCGAGTTACTAAAT
** *
14689363 CCGGGTTAAGTCCCGAAGGCATTTGTGC-AGTTTACTA-ATTCCAGGCTAAGCCCGAAGACAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TTACTATACACCGGGCTAAGCCCGAAGACAATT
* *
14689426 GTGCGAGTTACTAAGT
65 ATGCGAGTTACTAAAT
* * *
14689442 CCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATA-ACTGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACACCGGGCTAAG-CCCGAAG
14689500 GCATTTGAAC
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
77 2 0.02
78 29 0.25
79 76 0.65
80 10 0.09
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACACCGGGCTAAGCCCGAAGACAATTA
TGCGAGTTACTAAAT
Found at i:14689528 original size:79 final size:79
Alignment explanation
Indices: 14689285--14689539 Score: 263
Period size: 79 Copynumber: 3.2 Consensus size: 79
14689275 CGGTTGATAA
* *
14689285 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-T-TACACCGGGCTAAGCCCGAAGGCATTT-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACACCGGGCTAAGCCCGAAGGCATTTG
14689347 ATGCGAGTTACTAAAT
66 A-GCGAGTTACT-AAT
** * * *
14689363 CCGGGTTAAGTCCCGAAGGCATTTGTGC-AGTTTACTA-ATTCCAGGCTAAGCCCGAAGACAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TTACTATACACCGGGCTAAGCCCGAAGGCATTT
*
14689426 GTGCGAGTTACTAAGT
65 GAGCGAGTTACTAA-T
* * *
14689442 CCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATA-ACTGGGCTATGTCCCGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACACCGGGCTAAG-CCCGAAGGCATTT
* **
14689506 GAACGAGTGGCTATAT
65 GAGCGAGTTACTA-AT
* *
14689522 CC-GGTTAAATTCCGAAGG
1 CCGGGTTAAGTCCCGAAGG
14689540 TACGTGATTC
Statistics
Matches: 147, Mismatches: 21, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
77 2 0.01
78 31 0.21
79 87 0.59
80 26 0.18
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACACCGGGCTAAGCCCGAAGGCATTTG
AGCGAGTTACTAAT
Found at i:14698451 original size:16 final size:16
Alignment explanation
Indices: 14698430--14698461 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14698420 AATCTATATT
14698430 TATTATAAATTTTTTA
1 TATTATAAATTTTTTA
*
14698446 TATTATTAATTTTTTA
1 TATTATAAATTTTTTA
14698462 GATAAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TATTATAAATTTTTTA
Found at i:14701404 original size:19 final size:20
Alignment explanation
Indices: 14701380--14701417 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14701370 CACTTTAACA
14701380 ATAAATT-AATATAATATTT
1 ATAAATTAAATATAATATTT
*
14701399 ATAAATTAAATTTAATATT
1 ATAAATTAAATATAATATT
14701418 AAATTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAAATTAAATATAATATTT
Found at i:14701794 original size:19 final size:20
Alignment explanation
Indices: 14701770--14701811 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
14701760 TTCAACCAGT
* *
14701770 TTTTGGG-TCTTGGTCTCAA
1 TTTTGGGCTCTCGGGCTCAA
14701789 TTTTGGGCTCTCGGGCTCAA
1 TTTTGGGCTCTCGGGCTCAA
14701809 TTT
1 TTT
14701812 ACGATCTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.10, C:0.19, G:0.26, T:0.45
Consensus pattern (20 bp):
TTTTGGGCTCTCGGGCTCAA
Found at i:14709524 original size:40 final size:40
Alignment explanation
Indices: 14709421--14709524 Score: 156
Period size: 40 Copynumber: 2.6 Consensus size: 40
14709411 CCGGATAGCT
* * *
14709421 ACTCGCTCGAATACCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATACCTTCGGGACTTAGCCCGGATATAGTA
*
14709461 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTA
1 ACTCGCACAAATACCTTCGGGACTTAGCCCGGATA-TAGTA
14709501 ACTCGCACAAATACCTTCGGGACT
1 ACTCGCACAAATACCTTCGGGACT
14709525 CGCACAAATG
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.02
40 57 0.98
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (40 bp):
ACTCGCACAAATACCTTCGGGACTTAGCCCGGATATAGTA
Found at i:14709527 original size:21 final size:21
Alignment explanation
Indices: 14709501--14709545 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
14709491 GGAACTAGTA
14709501 ACTCGCACAAATACCTTCGGG
1 ACTCGCACAAATACCTTCGGG
*
14709522 ACTCGCACAAATGCCTTCGGG
1 ACTCGCACAAATACCTTCGGG
14709543 ACT
1 ACT
14709546 TAGCCCGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.33, G:0.20, T:0.20
Consensus pattern (21 bp):
ACTCGCACAAATACCTTCGGG
Found at i:14709556 original size:61 final size:61
Alignment explanation
Indices: 14709461--14709580 Score: 231
Period size: 61 Copynumber: 2.0 Consensus size: 61
14709451 GGATATAGTA
14709461 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATACCTTCGGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATACCTTCGGG
*
14709522 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATGCCTTCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATACCTTCG
14709581 ACGCTTAGCC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.20
Consensus pattern (61 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATACCTTCGGG
Found at i:14724396 original size:40 final size:40
Alignment explanation
Indices: 14724330--14724496 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
14724320 AAATTGAATG
* * *
14724330 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
14724369 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
14724409 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
14724449 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
14724489 ATATCCGG
1 ATATCCGG
14724497 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:14731594 original size:40 final size:40
Alignment explanation
Indices: 14731528--14731694 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
14731518 AAATTGAATG
* * *
14731528 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
14731567 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
14731607 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
14731647 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
14731687 ATATCCGG
1 ATATCCGG
14731695 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:14736105 original size:14 final size:15
Alignment explanation
Indices: 14736074--14736122 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 15
14736064 ACTAGAAGAA
14736074 AAAGAAAAAAGGAAG
1 AAAGAAAAAAGGAAG
* *
14736089 AAAG-AAAATGGAGG
1 AAAGAAAAAAGGAAG
*
14736103 AAA-AAGAAAGGAAG
1 AAAGAAAAAAGGAAG
14736117 -AAGAAA
1 AAAGAAA
14736123 TCGGCACCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 5
0.70 0.16 0.14
Matches are distributed among these distances:
13 2 0.08
14 20 0.77
15 4 0.15
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (15 bp):
AAAGAAAAAAGGAAG
Found at i:14742154 original size:40 final size:40
Alignment explanation
Indices: 14742095--14742302 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
14742085 CAATTGAATG
* * * *
14742095 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
14742135 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
14742175 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
14742215 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
14742255 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
14742295 ATATCCGG
1 ATATCCGG
14742303 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:14742233 original size:80 final size:80
Alignment explanation
Indices: 14742097--14742302 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
14742087 ATTGAATGAT
* * ** * * *
14742097 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
14742161 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
14742177 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
14742242 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
14742257 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
14742303 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:14750210 original size:40 final size:40
Alignment explanation
Indices: 14750151--14750358 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
14750141 CAATTGAATG
* * * *
14750151 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
14750191 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
14750231 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
14750271 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
14750311 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
14750351 ATATCCGG
1 ATATCCGG
14750359 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:14750289 original size:80 final size:80
Alignment explanation
Indices: 14750153--14750358 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
14750143 ATTGAATGAT
* * ** * * *
14750153 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
14750217 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
14750233 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
14750298 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
14750313 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
14750359 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:14754331 original size:20 final size:20
Alignment explanation
Indices: 14754306--14754354 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
14754296 GGAACTAAGG
14754306 AAATTTTTCGTAAAATTTCA
1 AAATTTTTCGTAAAATTTCA
14754326 AAATTTTTCGTAAAATTTCA
1 AAATTTTTCGTAAAATTTCA
14754346 AAATTTTTC
1 AAATTTTTC
14754355 CAAGGTACAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (20 bp):
AAATTTTTCGTAAAATTTCA
Found at i:14759231 original size:39 final size:39
Alignment explanation
Indices: 14759187--14759381 Score: 345
Period size: 39 Copynumber: 5.0 Consensus size: 39
14759177 ATTATATTAT
* *
14759187 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
14759226 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
14759265 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
14759304 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
14759343 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
14759382 AGTGTCTTGC
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 150 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:14760978 original size:21 final size:21
Alignment explanation
Indices: 14760954--14761008 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
14760944 TTTTCTAAAC
14760954 CCACTTGACCTTAGGGTCATA
1 CCACTTGACCTTAGGGTCATA
14760975 CCACTTGACCTTAGGGTCATA
1 CCACTTGACCTTAGGGTCATA
*
14760996 CCACTTGAGCTTA
1 CCACTTGACCTTA
14761009 ATAAATCGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (21 bp):
CCACTTGACCTTAGGGTCATA
Found at i:14766495 original size:40 final size:40
Alignment explanation
Indices: 14766440--14766643 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
14766430 TGAATGATAC
* * *
14766440 CCGGGCTAAGTCCCGAAGGCAATTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG-TTATAT
*
14766480 CCGGGCTGAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGTTATAT
* *
14766520 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
* *
14766560 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGTTATAT
* ** *
14766600 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
14766640 CCGG
1 CCGG
14766644 TTAAATTCCG
Statistics
Matches: 142, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.04
40 130 0.92
41 7 0.05
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
Found at i:14766573 original size:80 final size:80
Alignment explanation
Indices: 14766436--14766643 Score: 310
Period size: 80 Copynumber: 2.6 Consensus size: 80
14766426 CATTTGAATG
* * *
14766436 ATACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG-TGATTATATCCGGGCTGAGACCCGAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
*
14766500 ATTCGTGCGAGTTGTT
65 ATTCGTGCGAGTTGCT
* * *
14766516 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
14766581 TTCGTGCGAGTTGCT
66 TTCGTGCGAGTTGCT
* * *
14766596 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGG
14766644 TTAAATTCCG
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 112 0.98
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGCT
Found at i:14771545 original size:29 final size:28
Alignment explanation
Indices: 14771511--14771612 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 28
14771501 GTGACAAGAT
14771511 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCAAGCTT-AAATATA
*
14771540 TGGCACTAAGTGTGCGAA-CTTAAATTGTA
1 TGGCACTAAGTGTGC-AAGCTTAAA-TATA
* * * *
14771569 TGGCACTATGTGTACGAGCTTAAATCACA
1 TGGCACTAAGTGTGCAAGCTTAAAT-ATA
14771598 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
14771613 GAAATCGATT
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
28 5 0.08
29 54 0.89
30 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCAAGCTTAAATATA
Found at i:14773557 original size:29 final size:28
Alignment explanation
Indices: 14773515--14773617 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
14773505 GTGACAAGGT
14773515 TGGCACTAAGTGTGCGAGCTTGAAA-AGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATA-TA
* *
14773544 TGGCACTAAGTGTGCGAACTTAAATTATG
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
14773573 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
14773602 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14773618 TGATCGATAA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
28 4 0.06
29 59 0.92
30 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:14782976 original size:28 final size:28
Alignment explanation
Indices: 14782907--14783044 Score: 127
Period size: 28 Copynumber: 4.9 Consensus size: 28
14782897 GTGACAAGAT
*
14782907 TGGCACTAAGTGTGC-AAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAA-CTT-AATTATA
*
14782936 TGGCACTAAGTGTGCGAACTTAATTGTA
1 TGGCACTAAGTGTGCGAACTTAATTATA
* * * *
14782964 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAACTT-AATTATA
* **
14782993 TGGCACTAAGTGTGCGAAATCGATTAT-
1 TGGCACTAAGTGTGCGAACTTAATTATA
* *
14783020 TAAGCACTATGTGTGCGAACTTAAT
1 T-GGCACTAAGTGTGCGAACTTAAT
14783045 CTGTATATCT
Statistics
Matches: 87, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
27 1 0.01
28 45 0.52
29 39 0.45
30 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAACTTAATTATA
Found at i:14783008 original size:29 final size:28
Alignment explanation
Indices: 14782907--14783009 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 28
14782897 GTGACAAGAT
*
14782907 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
* * *
14782936 TGGCACTAAGTGTGCGAACTTAATTGTA
1 TGGCACTAAGTGTGCGAGCTTAAATATA
* *
14782964 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
14782993 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
14783010 AATCGATTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 27 0.43
29 36 0.57
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:14783027 original size:57 final size:56
Alignment explanation
Indices: 14782909--14783043 Score: 155
Period size: 57 Copynumber: 2.4 Consensus size: 56
14782899 GACAAGATTG
* * * * * *
14782909 GCACTAAGTGTGCAAGCTTGAAATATATGGCACTAAGTGTGCGAACTTAATTGTATG
1 GCACTATGTGTGCGAGCTT-AAATACATGGCACTAAGTGTGCGAAATCAATTGTATA
* *
14782966 GCACTATGTGTGCGAGCTTAAATCACATGGCACTAAGTGTGCGAAATCGATTAT-TAA
1 GCACTATGTGTGCGAGCTTAAAT-ACATGGCACTAAGTGTGCGAAATCAATTGTAT-A
*
14783023 GCACTATGTGTGCGAACTTAA
1 GCACTATGTGTGCGAGCTTAA
14783044 TCTGTATATC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
56 5 0.07
57 62 0.93
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (56 bp):
GCACTATGTGTGCGAGCTTAAATACATGGCACTAAGTGTGCGAAATCAATTGTATA
Found at i:14784954 original size:29 final size:28
Alignment explanation
Indices: 14784912--14785012 Score: 123
Period size: 29 Copynumber: 3.5 Consensus size: 28
14784902 GTGACAAGGT
14784912 TGGCACTAAGTGTGCGAGCTTGAAA-AGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATA-TA
* *
14784941 TGGCACTAAGTGTGCGAACTTAAATTATG
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
14784970 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
14784999 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
14785013 TGTGATCGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
28 4 0.06
29 57 0.92
30 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:14785160 original size:34 final size:34
Alignment explanation
Indices: 14785121--14785188 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
14785111 GCGGAAAGAG
14785121 TAAGTACCTTGAGCTCATGGCGAATAGGCGCTAT
1 TAAGTACCTTGAGCTCATGGCGAATAGGCGCTAT
14785155 TAAGTACCTTGAGCTCATGGCGAATAGGCGCTAT
1 TAAGTACCTTGAGCTCATGGCGAATAGGCGCTAT
14785189 GTTCATACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (34 bp):
TAAGTACCTTGAGCTCATGGCGAATAGGCGCTAT
Found at i:14787802 original size:29 final size:29
Alignment explanation
Indices: 14787756--14787823 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
14787746 ACGGAGCTAG
* **
14787756 ACTAAGTGTGCGAACTTAAATTATGTGGC
1 ACTAAGTGTGCGAACTTAAATCACATGGC
* *
14787785 ACTATGTGTGCGAGCTTAAATCACATGGC
1 ACTAAGTGTGCGAACTTAAATCACATGGC
14787814 ACTAAGTGTG
1 ACTAAGTGTG
14787824 TGTGATCGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (29 bp):
ACTAAGTGTGCGAACTTAAATCACATGGC
Found at i:14795362 original size:40 final size:40
Alignment explanation
Indices: 14795307--14795510 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
14795297 TGAATGATAC
* * *
14795307 CCGGGCTAAGTCCCGAAGGCAATTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG-TTATAT
*
14795347 CCGGGCTGAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGTTATAT
* *
14795387 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
* *
14795427 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGTTATAT
* ** *
14795467 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
14795507 CCGG
1 CCGG
14795511 TTAAATTCCG
Statistics
Matches: 142, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.04
40 130 0.92
41 7 0.05
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
Found at i:14795440 original size:80 final size:80
Alignment explanation
Indices: 14795303--14795510 Score: 310
Period size: 80 Copynumber: 2.6 Consensus size: 80
14795293 CATTTGAATG
* * *
14795303 ATACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG-TGATTATATCCGGGCTGAGACCCGAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
*
14795367 ATTCGTGCGAGTTGTT
65 ATTCGTGCGAGTTGCT
* * *
14795383 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
14795448 TTCGTGCGAGTTGCT
66 TTCGTGCGAGTTGCT
* * *
14795463 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGG
14795511 TTAAATTCCG
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 112 0.98
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGCT
Found at i:14797188 original size:39 final size:39
Alignment explanation
Indices: 14797134--14797366 Score: 387
Period size: 39 Copynumber: 6.0 Consensus size: 39
14797124 ATTATATTAT
*
14797134 CAGCACAAAGCCTGCGGGACTTTA-CCCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCC-GGATACATTTC
*
14797173 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
14797212 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
14797251 CAGCACGAAGCCTGCGGGACTTTGGCCCGAATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
14797290 CAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
14797329 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
14797367 TCAGTGTCTT
Statistics
Matches: 180, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 177 0.98
40 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:14798972 original size:21 final size:21
Alignment explanation
Indices: 14798948--14799002 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
14798938 TTTTCTAAAC
*
14798948 CCACTTGACCTTAGGGTCATA
1 CCACTTGAGCTTAGGGTCATA
14798969 CCACTTGAGCTTAGGGTCATA
1 CCACTTGAGCTTAGGGTCATA
14798990 CCACTTGAGCTTA
1 CCACTTGAGCTTA
14799003 ATAAATCGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (21 bp):
CCACTTGAGCTTAGGGTCATA
Found at i:14807802 original size:28 final size:28
Alignment explanation
Indices: 14807717--14807806 Score: 105
Period size: 28 Copynumber: 3.2 Consensus size: 28
14807707 GTGACAGAGT
*
14807717 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGA-ACAGATAATTTGTGGCA-TAGC
*
14807746 CACCAGAACAGAT-ATATGTGGCA-AGGC
1 CACCAGAACAGATAATTTGTGGCATA-GC
*
14807773 CACCAGAACTGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
14807801 CACCAG
1 CACCAG
14807807 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
27 22 0.42
28 23 0.43
29 8 0.15
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCATAGC
Found at i:14807959 original size:28 final size:28
Alignment explanation
Indices: 14807912--14807979 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
14807902 AAATTAACCC
* *
14807912 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
14807940 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
14807968 TAGGGGTATAAT
1 TAGGGGTATAAT
14807980 AGCACATCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:14815645 original size:55 final size:56
Alignment explanation
Indices: 14815580--14815694 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
14815570 AGCATGGCTG
* *
14815580 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
14815636 CCAGA-ACAGATATATGTGGCAGGGCCACTAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
14815691 CCAG
1 CCAG
14815695 GATGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:14815657 original size:27 final size:27
Alignment explanation
Indices: 14815605--14815694 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
14815595 GTGACAGAGT
14815605 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
14815634 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
14815661 CACTAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
14815689 CACCAG
1 CACCAG
14815695 GATGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:14815847 original size:28 final size:28
Alignment explanation
Indices: 14815800--14815867 Score: 111
Period size: 28 Copynumber: 2.4 Consensus size: 28
14815790 AAATTAACCC
*
14815800 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTCATTTTGCATACA
14815828 TAGGGGTATAATGG-CAATTTTGCATACA
1 TAGGGGTATAATGGTC-ATTTTGCATACA
14815856 TAGGGGTATAAT
1 TAGGGGTATAAT
14815868 AGCACATCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.32, C:0.09, G:0.26, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAATGGTCATTTTGCATACA
Found at i:14826801 original size:50 final size:50
Alignment explanation
Indices: 14826725--14826821 Score: 176
Period size: 50 Copynumber: 1.9 Consensus size: 50
14826715 AATTTTGTCG
* *
14826725 GATTAGGGTGAAACCTAATAAGGGAATCCATAAATCGAGTTAATGCACTA
1 GATTAAGGTGAAACCTAATAAAGGAATCCATAAATCGAGTTAATGCACTA
14826775 GATTAAGGTGAAACCTAATAAAGGAATCCATAAATCGAGTTAATGCA
1 GATTAAGGTGAAACCTAATAAAGGAATCCATAAATCGAGTTAATGCA
14826822 ACACTAGGGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.24
Consensus pattern (50 bp):
GATTAAGGTGAAACCTAATAAAGGAATCCATAAATCGAGTTAATGCACTA
Found at i:14836167 original size:19 final size:18
Alignment explanation
Indices: 14836133--14836168 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
14836123 GGTTTCTAAA
*
14836133 AAATGGAAATTGAAATGG
1 AAATGAAAATTGAAATGG
14836151 AAATGAAAATGTGAAATG
1 AAATGAAAAT-TGAAATG
14836169 ATCCATTTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.53, C:0.00, G:0.25, T:0.22
Consensus pattern (18 bp):
AAATGAAAATTGAAATGG
Found at i:14838964 original size:57 final size:58
Alignment explanation
Indices: 14838864--14839004 Score: 142
Period size: 57 Copynumber: 2.4 Consensus size: 58
14838854 ATGTATACAG
** ** ** *
14838864 CAGGATTACCAGTCTAGGCTAAATCCTTTTTATGTCATATGCTCTA-AGGAGCTT-GAT
1 CAGGATTACCAGTCTAGGCTAAATCCAATCCATAACATATGCTCGAGAGGA-CTTAGAT
* * * *
14838921 CTGGATTACCCGTCTAGGCTAAATCCAATCCATAACATGTGCTCGAGAGGACTTATAT
1 CAGGATTACCAGTCTAGGCTAAATCCAATCCATAACATATGCTCGAGAGGACTTAGAT
* *
14838979 CAGGATTACCTGTCTGGGCTAAATCC
1 CAGGATTACCAGTCTAGGCTAAATCC
14839005 TTTCGGTAAT
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
57 39 0.57
58 29 0.43
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (58 bp):
CAGGATTACCAGTCTAGGCTAAATCCAATCCATAACATATGCTCGAGAGGACTTAGAT
Found at i:14840684 original size:30 final size:30
Alignment explanation
Indices: 14840626--14840684 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
14840616 GATTTTCAGG
* **
14840626 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
14840656 CTAGGGGCAAAATGGAT-ATTTTACCAAAG
1 CTAGGGGCAAAATGG-TCATTTTACCAAAG
14840685 ATATGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:14842425 original size:20 final size:21
Alignment explanation
Indices: 14842386--14842425 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14842376 GTCGAAATGG
14842386 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
*
14842407 CCACATGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
14842426 GTTTCAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:14854751 original size:39 final size:39
Alignment explanation
Indices: 14854692--14854915 Score: 179
Period size: 39 Copynumber: 5.6 Consensus size: 39
14854682 CGGATGATAA
*
14854692 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-TAAAT
* *
14854732 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTG-TGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGAT-AAAT
* *
14854771 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTG-TGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGAT-AAAT
* ** * *
14854810 CCGGGTTAAGTCCCGAAGGCATTCATGTGAGTTATTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-TA-AAT
* * * *
14854851 CTGGGTTAAGTCCCGAAGGCATTTGTACGAGTCACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-TA-AAT
* * *
14854891 CCGGGCTATGCCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
14854916 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 70 0.45
40 49 0.31
41 36 0.23
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATAAAT
Found at i:14854842 original size:40 final size:39
Alignment explanation
Indices: 14854686--14854882 Score: 195
Period size: 39 Copynumber: 4.9 Consensus size: 39
14854676 AATGTTCGGA
* *
14854686 TGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TG
1 TGATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTG
*
14854725 ACT-AAATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTG
1 --TGATATCCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTG
14854765 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTG
* * * *
14854804 TGATATCCGGGTTAAGTCCCGAAGGCATTCATGTGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTG
* * * *
14854844 TTATAATCTGGGTTAAGTCCCGAAGGCATTTGTACGAGT
1 TGAT-ATCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGT
14854883 CACTATAACC
Statistics
Matches: 136, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 71 0.52
40 34 0.25
41 28 0.21
42 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (39 bp):
TGATATCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTG
Found at i:14854842 original size:79 final size:79
Alignment explanation
Indices: 14854685--14854882 Score: 215
Period size: 79 Copynumber: 2.5 Consensus size: 79
14854675 GAATGTTCGG
* *
14854685 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAAATCCGGGCTAAGCCCGAAG
1 ATGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGA-TAAATCCGGGCTAAGCCCGAAG
*
14854749 GCAATTGTGCGAGTT
65 GCAATTATGCGAGTT
* * * *
14854764 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTG-TGATATCCGGGTTAAGTCCCGAA
1 ATGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGAT-AAATCCGGGCTAAG-CCCGAA
*
14854827 GGC-ATTCATGTGAGTT
64 GGCAATT-ATGCGAGTT
* * * *
14854843 ATTATAATCTGGGTTAAGTCCCGAAGGCATTTGTACGAGT
1 ATGAT-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
14854883 CACTATAACC
Statistics
Matches: 99, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 33 0.33
79 36 0.36
80 10 0.10
81 19 0.19
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (79 bp):
ATGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGATAAATCCGGGCTAAGCCCGAAGG
CAATTATGCGAGTT
Found at i:14854895 original size:81 final size:78
Alignment explanation
Indices: 14854685--14854910 Score: 224
Period size: 81 Copynumber: 2.8 Consensus size: 78
14854675 GAATGTTCGG
* *
14854685 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AATCCGGGCTAAGCCCGAAG
1 ATGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAA-CCGGGCTAAGCCCGAAG
*
14854749 GCAATTGTGCGAGTT
64 GCAATTATGCGAGTT
* * ** * *
14854764 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAG
1 ATGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACT-ATAACCGGGCTAAG-CCCGAAG
*
14854828 GC-ATTCATGTGAGTT
64 GCAATT-ATGCGAGTT
* * * * *
14854843 ATTATAATCTGGGTTAAGTCCCGAAGGCATTTGTACGAGTCACTATAACCGGGCTATGCCCCGAA
1 ATGAT-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAACCGGGCTAAG-CCCGAA
14854908 GGC
63 GGC
14854911 GTTTGAACGA
Statistics
Matches: 118, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
77 1 0.01
78 32 0.27
79 35 0.30
80 10 0.08
81 39 0.33
82 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (78 bp):
ATGATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGGCTAAGCCCGAAGGC
AATTATGCGAGTT
Found at i:14856693 original size:51 final size:52
Alignment explanation
Indices: 14856616--14856718 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 52
14856606 CCATAAAAGT
14856616 TCATTCAATTCAAAACCATTTATTCACATACATATCATCCCTTATATGGGCC
1 TCATTCAATTCAAAACCATTTATTCACATACATATCATCCCTTATATGGGCC
*
14856668 TCATTCAATTC-AAACCATTTATTCACATACATATCGTCCCTTATATGGGCC
1 TCATTCAATTCAAAACCATTTATTCACATACATATCATCCCTTATATGGGCC
14856719 CACGAGGCCC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 39 0.78
52 11 0.22
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (52 bp):
TCATTCAATTCAAAACCATTTATTCACATACATATCATCCCTTATATGGGCC
Found at i:14859070 original size:20 final size:20
Alignment explanation
Indices: 14859034--14859071 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14859024 CGTTTCTCTA
*
14859034 ACCATAAACATGCAAAATCT
1 ACCATAAACATGAAAAATCT
14859054 ACCATTAAACAT-AAAAAT
1 ACCA-TAAACATGAAAAAT
14859072 ACAAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.55, C:0.21, G:0.03, T:0.21
Consensus pattern (20 bp):
ACCATAAACATGAAAAATCT
Found at i:14861973 original size:24 final size:23
Alignment explanation
Indices: 14861934--14861989 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 23
14861924 CAAGTAGTCA
* *
14861934 CATTTCATATACATGTATTAT-T
1 CATTTCATATAAATGTATCATAT
14861956 CATTTCATATATTAATGTATCATAT
1 CATTTCATATA--AATGTATCATAT
14861981 CACTTTCAT
1 CA-TTTCAT
14861990 GTGTTTTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 11 0.39
24 8 0.29
25 3 0.11
26 6 0.21
ACGTcount: A:0.32, C:0.16, G:0.04, T:0.48
Consensus pattern (23 bp):
CATTTCATATAAATGTATCATAT
Found at i:14862228 original size:25 final size:25
Alignment explanation
Indices: 14862200--14862257 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
14862190 AAGCTCCTCT
*
14862200 GAGCTGAATAAT-GGTAGGCTCATAC
1 GAGCTGAAT-ATCGGTAAGCTCATAC
*
14862225 GAGCTGAGTATCGGTAAGCTCATAC
1 GAGCTGAATATCGGTAAGCTCATAC
*
14862250 AAGCTGAA
1 GAGCTGAA
14862258 ATTAGTAACC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 2 0.07
25 26 0.93
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (25 bp):
GAGCTGAATATCGGTAAGCTCATAC
Found at i:14863908 original size:27 final size:28
Alignment explanation
Indices: 14863878--14863947 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
14863868 ATAGTGAGTC
*
14863878 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
*
14863905 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
14863933 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14863948 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:14868879 original size:43 final size:43
Alignment explanation
Indices: 14868811--14868894 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
14868801 GTTACATGAA
* * * *
14868811 TCGCATCCATTATGAACTCGGACCTCTCAACGAGCTCGGATGC
1 TCGCATCCATAATAAAATCGAACCTCTCAACGAGCTCGGATGC
*
14868854 TCGCATCCATAATAAAATCGAACCTCTCAACGAGGTCGGAT
1 TCGCATCCATAATAAAATCGAACCTCTCAACGAGCTCGGAT
14868895 ACCACATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (43 bp):
TCGCATCCATAATAAAATCGAACCTCTCAACGAGCTCGGATGC
Found at i:14873435 original size:15 final size:15
Alignment explanation
Indices: 14873416--14873460 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
14873406 AACTAGGATT
*
14873416 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
*
14873431 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
14873446 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
14873461 CAATATCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.56, C:0.13, G:0.18, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:14873436 original size:30 final size:30
Alignment explanation
Indices: 14873402--14873460 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
14873392 ATAGATAACA
* * * *
14873402 AGAAAACTAGGATTAAGAAGTCCAAGATAG
1 AGAAAACCAAGATAAAGAAATCCAAGATAG
*
14873432 AGAAATCCAAGATAAAGAAATCCAAGATA
1 AGAAAACCAAGATAAAGAAATCCAAGATA
14873461 CAATATCATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.54, C:0.12, G:0.19, T:0.15
Consensus pattern (30 bp):
AGAAAACCAAGATAAAGAAATCCAAGATAG
Found at i:14873609 original size:2 final size:2
Alignment explanation
Indices: 14873602--14873640 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
14873592 TGTGCCTTCC
14873602 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14873641 CGAACAGAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14878971 original size:28 final size:28
Alignment explanation
Indices: 14878902--14878999 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 28
14878892 GACAAGATTG
* * * *
14878902 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
14878932 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
14878960 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
14878989 GCACTAAGTGT
1 GCACTAAGTGT
14879000 TCGGATTCAC
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.39
29 16 0.26
30 18 0.30
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:14886617 original size:30 final size:29
Alignment explanation
Indices: 14886581--14886683 Score: 104
Period size: 28 Copynumber: 3.6 Consensus size: 29
14886571 GACAAGATTG
*
14886581 GCACTAAGTGTGCGG-GTTTAAAATTGTACA
1 GCACTAAGTGTGCGGAGTTT--AATTATACA
* *
14886611 GCACTAAGTGTG-GGAGTTTGATTATATA
1 GCACTAAGTGTGCGGAGTTTAATTATACA
* * *
14886639 GCACTAAGTGTGC-GAGTTGAATACATATA
1 GCACTAAGTGTGCGGAGTTTAAT-TATACA
14886668 GCACTAAGTGTGCGGA
1 GCACTAAGTGTGCGGA
14886684 TTCACTATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
28 25 0.40
29 20 0.32
30 18 0.29
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGGAGTTTAATTATACA
Found at i:14886649 original size:28 final size:29
Alignment explanation
Indices: 14886610--14886681 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
14886600 AAAATTGTAC
* *
14886610 AGCACTAAGTGTGGGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-TTGAATACATAT
14886638 AGCACTAAGTGTGCGAGTTGAATACATAT
1 AGCACTAAGTGTGCGAGTTGAATACATAT
14886667 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
14886682 GATTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 3 0.08
28 18 0.45
29 19 0.47
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGTTGAATACATAT
Found at i:14888516 original size:30 final size:30
Alignment explanation
Indices: 14888458--14888516 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
14888448 ATTTTCGAGC
**
14888458 CTAGGGGAAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGAAAAATGGTCATTTTACCAAAGT
* * *
14888488 CTAGGGGCAACATGGTCGTTTTACCAAAG
1 CTAGGGGAAAAATGGTCATTTTACCAAAG
14888517 ATTTGTATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (30 bp):
CTAGGGGAAAAATGGTCATTTTACCAAAGT
Found at i:14889004 original size:46 final size:45
Alignment explanation
Indices: 14888860--14889076 Score: 231
Period size: 46 Copynumber: 4.6 Consensus size: 45
14888850 TGTGTGAGCT
* * * *
14888860 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA-AGCC
* * *
14888906 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC-AAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAA--GCC
* *
14888954 AGTGTAAGACATGTCTAGGACATGCATCTGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AAGCC
14889000 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AAGCC
* *
14889046 AGTGTAAGATCATATTTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
14889077 ACACAGATAT
Statistics
Matches: 146, Mismatches: 16, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
46 78 0.53
47 40 0.27
48 27 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAAGCC
Found at i:14893399 original size:30 final size:30
Alignment explanation
Indices: 14893314--14893402 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 30
14893304 GACCCAACAT
* * * * * *
14893314 AGGGTATGAAAGGTAAATGTAAATGGTTAT
1 AGGGTATGATATGTAAATATGAATGATTAC
*
14893344 AGGGTATGATATGT--ATTTGAAAATGATTAC
1 AGGGTATGATATGTAAATATG--AATGATTAC
14893374 AGGGTATGATATGTAAATATGAATGATTA
1 AGGGTATGATATGTAAATATGAATGATTA
14893403 TATGGTTGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
28 3 0.06
30 41 0.85
32 4 0.08
ACGTcount: A:0.39, C:0.01, G:0.26, T:0.34
Consensus pattern (30 bp):
AGGGTATGATATGTAAATATGAATGATTAC
Found at i:14896382 original size:22 final size:22
Alignment explanation
Indices: 14896354--14896397 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
14896344 AACTCACAAG
14896354 TTAGTGCACTTGTCCATGATAC
1 TTAGTGCACTTGTCCATGATAC
14896376 TTAGTGCACTTGTCCATGATAC
1 TTAGTGCACTTGTCCATGATAC
14896398 AAATGAAGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (22 bp):
TTAGTGCACTTGTCCATGATAC
Found at i:14896650 original size:26 final size:26
Alignment explanation
Indices: 14896614--14896681 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
14896604 TACATCAATG
* *
14896614 CTCACAAGAGCTGTGGAATGGGTCTA
1 CTCATAAGAGCTGTGGAATGGGCCTA
14896640 CTCATAAGAGCTGTGGAATGGGCCTA
1 CTCATAAGAGCTGTGGAATGGGCCTA
*
14896666 CTCATACGAGCTGTGG
1 CTCATAAGAGCTGTGG
14896682 GCAGAATGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.24
Consensus pattern (26 bp):
CTCATAAGAGCTGTGGAATGGGCCTA
Found at i:14904277 original size:29 final size:28
Alignment explanation
Indices: 14904243--14904344 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 28
14904233 AATCGATTTC
* *
14904243 GCACACTTAGTGCCATGTGATTTAAGCCT
1 GCACACTTAGTGCCATAT-ATTTAAGCTT
* * *
14904272 GCACACATAGTGTCATACAATTTAAG-TT
1 GCACACTTAGTGCCATA-TATTTAAGCTT
14904300 CGCACACTTAGTGCCATATATTTCAAGCTT
1 -GCACACTTAGTGCCATATATTT-AAGCTT
14904330 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
14904345 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
28 5 0.08
29 54 0.89
30 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (28 bp):
GCACACTTAGTGCCATATATTTAAGCTT
Found at i:14912390 original size:29 final size:28
Alignment explanation
Indices: 14912290--14912391 Score: 107
Period size: 29 Copynumber: 3.5 Consensus size: 28
14912280 AATCGATTTC
* * *
14912290 GCACACTTAGTGCTATGTGATTTAAGCTC
1 GCACACTTAGTGCCATAT-ATTTAAGCTT
* * *
14912319 GCACACATAGTGTCATACAATTTAAG-TT
1 GCACACTTAGTGCCATA-TATTTAAGCTT
14912347 CGCACACTTAGTGCCATATATTTCAAGCTT
1 -GCACACTTAGTGCCATATATTT-AAGCTT
14912377 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
14912392 ATCTTGTCAC
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
28 5 0.08
29 53 0.88
30 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (28 bp):
GCACACTTAGTGCCATATATTTAAGCTT
Found at i:14921492 original size:5 final size:5
Alignment explanation
Indices: 14921482--14921506 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14921472 GTGTTCTAAC
14921482 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
14921507 GCATTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:14921562 original size:14 final size:14
Alignment explanation
Indices: 14921545--14921571 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14921535 TAGTTATGTA
14921545 AATATTTTTATTTT
1 AATATTTTTATTTT
14921559 AATATTTTTATTT
1 AATATTTTTATTT
14921572 ACCTTATTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
AATATTTTTATTTT
Found at i:14922147 original size:27 final size:27
Alignment explanation
Indices: 14922109--14922172 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
14922099 TGTTAGAATT
*
14922109 AGGAGAAATAAGGTTTTTGGATGTCAC
1 AGGAGAAATAAGGTTTTTGGATGTAAC
14922136 AGGAGAAATAAGGTTTTTGGATGTAAC
1 AGGAGAAATAAGGTTTTTGGATGTAAC
*
14922163 AGGACAAATA
1 AGGAGAAATA
14922173 GAAGCTAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.27
Consensus pattern (27 bp):
AGGAGAAATAAGGTTTTTGGATGTAAC
Found at i:14927904 original size:29 final size:29
Alignment explanation
Indices: 14927833--14927904 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
14927823 GGTGAGATTT
*
14927833 GCACTAAGTGTGCAAGCTTGAAATGTATG
1 GCACTAAGTGTGCGAGCTTGAAATGTATG
*
14927862 GCACTAAGTGTGCGAG-TTTAAA-GTACATG
1 GCACTAAGTGTGCGAGCTTGAAATGT--ATG
14927891 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
14927905 CGGTTGATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
27 2 0.05
28 5 0.13
29 32 0.82
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTTGAAATGTATG
Found at i:14934045 original size:29 final size:29
Alignment explanation
Indices: 14934011--14934113 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 29
14934001 TAATCGATCA
* *
14934011 CGCACACTTAGTGCCATGTGGTTTAAGCT
1 CGCACACTTAGTGCCATATAGTTTAAGCT
*
14934040 CGCACACATAGTGCCATATAGTTTAAGCT
1 CGCACACTTAGTGCCATATAGTTTAAGCT
*
14934069 CGCACACTTAGTGCCATACA-TTTCAAGCT
1 CGCACACTTAGTGCCATATAGTTT-AAGCT
* *
14934098 TGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
14934114 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 3 0.05
29 63 0.95
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAGTTTAAGCT
Found at i:14942284 original size:29 final size:29
Alignment explanation
Indices: 14942250--14942352 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 29
14942240 TAATCGATCA
* *
14942250 CGCACACTTAGTGCCATGTGGTTTAAGCT
1 CGCACACTTAGTGCCATATAGTTTAAGCT
*
14942279 CGCACACATAGTGCCATATAGTTTAAGCT
1 CGCACACTTAGTGCCATATAGTTTAAGCT
*
14942308 CGCACACTTAGTGCCATACA-TTTCAAGCT
1 CGCACACTTAGTGCCATATAGTTT-AAGCT
* *
14942337 TGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
14942353 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 3 0.05
29 63 0.95
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAGTTTAAGCT
Found at i:14947172 original size:29 final size:29
Alignment explanation
Indices: 14947138--14947271 Score: 101
Period size: 29 Copynumber: 4.6 Consensus size: 29
14947128 TACTCGATTT
* * *
14947138 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
14947167 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
14947196 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
14947225 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
14947254 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
14947272 TATTTCCAGC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:14947230 original size:58 final size:59
Alignment explanation
Indices: 14947137--14947296 Score: 200
Period size: 58 Copynumber: 2.7 Consensus size: 59
14947127 ATACTCGATT
** * ** * * *
14947137 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
14947195 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
14947254 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
14947297 TAATCTCGTC
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 85 0.94
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:14947272 original size:29 final size:29
Alignment explanation
Indices: 14947197--14947296 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
14947187 CTTCGAGCTC
14947197 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
14947226 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
14947255 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
14947284 GCACACTTAGTGC
1 GCACACTTAGTGC
14947297 TAATCTCGTC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:14955059 original size:29 final size:29
Alignment explanation
Indices: 14955025--14955158 Score: 101
Period size: 29 Copynumber: 4.6 Consensus size: 29
14955015 TACTCGATTT
* * *
14955025 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
14955054 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
14955083 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
14955112 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
14955141 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
14955159 TATTTCCAGC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:14955117 original size:58 final size:59
Alignment explanation
Indices: 14955024--14955181 Score: 196
Period size: 58 Copynumber: 2.7 Consensus size: 59
14955014 ATACTCGATT
** * ** * * *
14955024 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
14955082 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
14955141 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGT
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGT
14955182 CCAATCTCGT
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
57 4 0.05
58 83 0.94
59 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:14955159 original size:29 final size:29
Alignment explanation
Indices: 14955084--14955181 Score: 196
Period size: 29 Copynumber: 3.4 Consensus size: 29
14955074 CTTCGAGCTC
14955084 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
14955113 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
14955142 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
14955171 GCACACTTAGT
1 GCACACTTAGT
14955182 CCAATCTCGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 69 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:14962906 original size:29 final size:29
Alignment explanation
Indices: 14962872--14962976 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
14962862 TACTCGATTT
* * *
14962872 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
14962901 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
14962930 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
14962959 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
14962977 TATTTCCAGC
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:14962977 original size:29 final size:29
Alignment explanation
Indices: 14962931--14962999 Score: 138
Period size: 29 Copynumber: 2.4 Consensus size: 29
14962921 CTTCGAGCTC
14962931 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
14962960 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
14962989 GCACACTTAGT
1 GCACACTTAGT
14963000 CCTAATCTCG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:14969383 original size:29 final size:29
Alignment explanation
Indices: 14969349--14969451 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 29
14969339 TAATCGATCA
* *
14969349 CGCACACTTAGTGCCATGTGGTTTAAGCT
1 CGCACACTTAGTGCCATATAGTTTAAGCT
*
14969378 CGCACACATAGTGCCATATAGTTTAAGCT
1 CGCACACTTAGTGCCATATAGTTTAAGCT
*
14969407 CGCACACTTAGTGCCATACA-TTTCAAGCT
1 CGCACACTTAGTGCCATATAGTTT-AAGCT
* *
14969436 GGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
14969452 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 3 0.05
29 63 0.95
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAGTTTAAGCT
Found at i:14974788 original size:29 final size:28
Alignment explanation
Indices: 14974755--14974855 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 28
14974745 GGTGAGATTT
* *
14974755 GCACTAAGTGTGCAAGCTTGAAATGT-ATG
1 GCACTAAGTGTGCGAG-TTTAAA-GTAATG
14974784 GCACTAAGTGTGCGAGTTTAAAGTACATG
1 GCACTAAGTGTGCGAGTTTAAAGTA-ATG
14974813 GCACTAAGTGTGCGAGTTTAAAGTACATG
1 GCACTAAGTGTGCGAGTTTAAAGTA-ATG
14974842 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
14974856 CGGTTGATTA
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
27 2 0.03
28 5 0.07
29 61 0.90
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.27
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAAAGTAATG
Found at i:14976909 original size:40 final size:40
Alignment explanation
Indices: 14976824--14976974 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
14976814 AATTGAATGA
* * *
14976824 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
14976864 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
14976905 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
14976944 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
14976975 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:14976988 original size:40 final size:40
Alignment explanation
Indices: 14976861--14976990 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
14976851 ATGCTGGAAA
* * * *
14976861 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
14976901 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
14976941 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
14976981 TTATATCCGG
1 TTATATCCGG
14976991 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:14981911 original size:21 final size:21
Alignment explanation
Indices: 14981885--14981950 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
14981875 GAAATGTTAC
14981885 AGTTAAAGAAAGATTAGACTT
1 AGTTAAAGAAAGATTAGACTT
*
14981906 AGTTAACTGAAATG-TT--AC--
1 AGTTAA-AGAAA-GATTAGACTT
14981924 AGTTAAAGAAAGATTAGACTT
1 AGTTAAAGAAAGATTAGACTT
14981945 AGTTAA
1 AGTTAA
14981951 CTAACTTATC
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
16 1 0.03
17 6 0.17
18 6 0.17
19 2 0.06
20 2 0.06
21 12 0.33
22 6 0.17
23 1 0.03
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.30
Consensus pattern (21 bp):
AGTTAAAGAAAGATTAGACTT
Found at i:14981917 original size:39 final size:39
Alignment explanation
Indices: 14981873--14981952 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
14981863 TTTCTGAATT
14981873 CTGAAATGTTACAGTTAAAGAAAGATTAGACTTAGTTAA
1 CTGAAATGTTACAGTTAAAGAAAGATTAGACTTAGTTAA
14981912 CTGAAATGTTACAGTTAAAGAAAGATTAGACTTAGTTAA
1 CTGAAATGTTACAGTTAAAGAAAGATTAGACTTAGTTAA
14981951 CT
1 CT
14981953 AACTTATCCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.31
Consensus pattern (39 bp):
CTGAAATGTTACAGTTAAAGAAAGATTAGACTTAGTTAA
Found at i:14983352 original size:30 final size:30
Alignment explanation
Indices: 14983318--14983378 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14983308 TTCCCGAGCC
*
14983318 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
* * * *
14983348 TAGGGGTAAAATTGTAATTTTGAAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAAGTT
14983378 T
1 T
14983379 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.03, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGAAAAAGTT
Found at i:14984556 original size:12 final size:12
Alignment explanation
Indices: 14984539--14984565 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
14984529 AAAGGAATTC
14984539 TATATTCTGAGA
1 TATATTCTGAGA
14984551 TATATTCTGAGA
1 TATATTCTGAGA
14984563 TAT
1 TAT
14984566 TTAAGTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.44
Consensus pattern (12 bp):
TATATTCTGAGA
Found at i:14991466 original size:96 final size:96
Alignment explanation
Indices: 14991302--14991496 Score: 390
Period size: 96 Copynumber: 2.0 Consensus size: 96
14991292 GCATGATAGG
14991302 AGATAACCTTTACAGCCAGTTCGTTGATCTCAAACAAAAAAAATCGAGAGAAGGAGTAAGGAAAT
1 AGATAACCTTTACAGCCAGTTCGTTGATCTCAAACAAAAAAAATCGAGAGAAGGAGTAAGGAAAT
14991367 AAACATAGGAGTGATCCTCAAGGGCCGACAA
66 AAACATAGGAGTGATCCTCAAGGGCCGACAA
14991398 AGATAACCTTTACAGCCAGTTCGTTGATCTCAAACAAAAAAAATCGAGAGAAGGAGTAAGGAAAT
1 AGATAACCTTTACAGCCAGTTCGTTGATCTCAAACAAAAAAAATCGAGAGAAGGAGTAAGGAAAT
14991463 AAACATAGGAGTGATCCTCAAGGGCCGACAA
66 AAACATAGGAGTGATCCTCAAGGGCCGACAA
14991494 AGA
1 AGA
14991497 GAAAGAGTAA
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
96 99 1.00
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.17
Consensus pattern (96 bp):
AGATAACCTTTACAGCCAGTTCGTTGATCTCAAACAAAAAAAATCGAGAGAAGGAGTAAGGAAAT
AAACATAGGAGTGATCCTCAAGGGCCGACAA
Found at i:14996594 original size:16 final size:16
Alignment explanation
Indices: 14996575--14996608 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14996565 TGCTTATAAA
*
14996575 TTTTAGTACTTAATTT
1 TTTTAGCACTTAATTT
*
14996591 TTTTAGCATTTAATTT
1 TTTTAGCACTTAATTT
14996607 TT
1 TT
14996609 CAATTTATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTTAGCACTTAATTT
Found at i:14997209 original size:17 final size:18
Alignment explanation
Indices: 14997175--14997209 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14997165 AAATAAAATA
*
14997175 TTTAGAAATTTAATTATT
1 TTTACAAATTTAATTATT
14997193 TTTACAAATTT-ATTATT
1 TTTACAAATTTAATTATT
14997210 GAAATGGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTACAAATTTAATTATT
Found at i:14999098 original size:25 final size:27
Alignment explanation
Indices: 14999061--14999113 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
14999051 TCAAACATGC
14999061 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
14999087 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
14999113 A
1 A
14999114 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:15000636 original size:26 final size:26
Alignment explanation
Indices: 15000600--15000683 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
15000590 CATGAAATTC
15000600 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
15000626 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
15000652 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
15000678 TTATCA
1 TTATCA
15000684 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:15001522 original size:12 final size:12
Alignment explanation
Indices: 15001492--15001524 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
15001482 ACCGGAAAGC
*
15001492 ATAGATAGCTAA
1 ATAGATGGCTAA
15001504 ATAGATGGCTAA
1 ATAGATGGCTAA
15001516 ATAGATGGC
1 ATAGATGGC
15001525 CATGGAGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (12 bp):
ATAGATGGCTAA
Found at i:15004883 original size:14 final size:14
Alignment explanation
Indices: 15004860--15004889 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15004850 TTGAAAATAT
15004860 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
15004874 GTTGATTTGGATTG
1 GTTGAATTGGATTG
15004888 GT
1 GT
15004890 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:15007065 original size:24 final size:24
Alignment explanation
Indices: 15007031--15007141 Score: 141
Period size: 24 Copynumber: 4.6 Consensus size: 24
15007021 TCTTACTTAT
**
15007031 TCGCACACATAGTGCCACGTTTTC
1 TCGCACACATAGTGCCACGTAATC
* *
15007055 TTGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCACGTAATC
*
15007079 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCACGTAATC
* **
15007103 TCGCACACATAGTGCCACATAGCC
1 TCGCACACATAGTGCCACGTAATC
*
15007127 TTGCACACATAGTGC
1 TCGCACACATAGTGC
15007142 TGTATTTTCT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 77 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTAATC
Found at i:15010225 original size:16 final size:16
Alignment explanation
Indices: 15010206--15010241 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
15010196 ACCATTAAAT
15010206 TTTAATATGTGACCAA
1 TTTAATATGTGACCAA
15010222 TTTAATATGTGACCAA
1 TTTAATATGTGACCAA
15010238 TTTA
1 TTTA
15010242 GTAGGAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (16 bp):
TTTAATATGTGACCAA
Found at i:15023938 original size:18 final size:18
Alignment explanation
Indices: 15023915--15024005 Score: 128
Period size: 18 Copynumber: 5.1 Consensus size: 18
15023905 ATCCCAACTA
*
15023915 CGTATACGTGAACAGTAC
1 CGTATACGTGAATAGTAC
*
15023933 CGTATACGTGAATAGTAT
1 CGTATACGTGAATAGTAC
*
15023951 CGTATACGTAAATAGTAC
1 CGTATACGTGAATAGTAC
* *
15023969 CGTATACGTAAATAGTGC
1 CGTATACGTGAATAGTAC
*
15023987 TGTATACGTGAATAGTAC
1 CGTATACGTGAATAGTAC
15024005 C
1 C
15024006 ATAAATTGTC
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (18 bp):
CGTATACGTGAATAGTAC
Found at i:15024734 original size:24 final size:24
Alignment explanation
Indices: 15024691--15024739 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
15024681 GACACCAATT
* *
15024691 TTGTTTTATGAATCATATATATTG
1 TTGTTTTATGAAGCACATATATTG
*
15024715 TTGTTTTATGAAGGACATATATTG
1 TTGTTTTATGAAGCACATATATTG
15024739 T
1 T
15024740 GATTTTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.51
Consensus pattern (24 bp):
TTGTTTTATGAAGCACATATATTG
Found at i:15025255 original size:8 final size:8
Alignment explanation
Indices: 15025239--15025298 Score: 52
Period size: 8 Copynumber: 7.6 Consensus size: 8
15025229 GAAGAGAAAT
*
15025239 AAGATGAA
1 AAGAAGAA
15025247 AAGAAGAA
1 AAGAAGAA
15025255 AAGAAGAA
1 AAGAAGAA
*
15025263 AAG-GGAA
1 AAGAAGAA
*
15025270 AGAGAGGAA
1 A-AGAAGAA
*
15025279 AAGAATAA
1 AAGAAGAA
*
15025287 AA-AAAAA
1 AAGAAGAA
15025294 AAGAA
1 AAGAA
15025299 AAATAAAGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
7 10 0.23
8 29 0.66
9 5 0.11
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (8 bp):
AAGAAGAA
Found at i:15025282 original size:24 final size:23
Alignment explanation
Indices: 15025244--15025288 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
15025234 GAAATAAGAT
15025244 GAAAAGAAGAAAAGAAGAAAAGG
1 GAAAAGAAGAAAAGAAGAAAAGG
* *
15025267 GAAAGAGAGGAAAAGAATAAAA
1 GAAA-AGAAGAAAAGAAGAAAA
15025289 AAAAAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (23 bp):
GAAAAGAAGAAAAGAAGAAAAGG
Found at i:15025537 original size:16 final size:18
Alignment explanation
Indices: 15025513--15025556 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 18
15025503 GACATCTATA
*
15025513 TAATCAAATT-TATT-TT
1 TAATTAAATTATATTATT
15025529 TAATTAAATTATATTATT
1 TAATTAAATTATATTATT
15025547 TAATATAAAT
1 TAAT-TAAAT
15025557 AAAAATTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 9 0.38
17 4 0.17
18 6 0.25
19 5 0.21
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATTAAATTATATTATT
Found at i:15032560 original size:112 final size:112
Alignment explanation
Indices: 15032342--15032561 Score: 264
Period size: 113 Copynumber: 2.0 Consensus size: 112
15032332 TTCACTGTTG
* * * *
15032342 ATAGCTTTGTGCTTTAGCTGAGCTATCTATATTTGAAATGCATTTGACCTTAAAGTTGAAAGAGT
1 ATAGCTTTGTGCATTAACTGAGCTATCTATATTTGAAATACATTTGACCTTAAAG-TGAAAAAGT
* * *
15032407 AAAAAGCTATACTGTGAGATCTAAAAGGGTTGTTGAGTGCTGACACTT
65 AAAAAGCTATACTGTGAGATCTAAAAGGATAGTTGAATGCTGACACTT
* * * * **
15032455 ATAGTTTTGTGCATTAACTTAGCTATCTATATTTGAAATACGTTTGTCCTTGTAG-GAAAAAAGT
1 ATAGCTTTGTGCATTAACTGAGCTATCTATATTTGAAATACATTTGACCTTAAAGTG-AAAAAGT
* *
15032519 AGAAAA-CTATATTTTGAGATCTAAAAGGATAGTTGAATGCTGA
65 A-AAAAGCTATACTGTGAGATCTAAAAGGATAGTTGAATGCTGA
15032562 AACCTTTTAG
Statistics
Matches: 90, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
111 1 0.01
112 39 0.43
113 50 0.56
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.35
Consensus pattern (112 bp):
ATAGCTTTGTGCATTAACTGAGCTATCTATATTTGAAATACATTTGACCTTAAAGTGAAAAAGTA
AAAAGCTATACTGTGAGATCTAAAAGGATAGTTGAATGCTGACACTT
Found at i:15039722 original size:13 final size:13
Alignment explanation
Indices: 15039706--15039730 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15039696 AATATCTGCA
15039706 AAAATAAAAAAAT
1 AAAATAAAAAAAT
15039719 AAAATAAAAAAA
1 AAAATAAAAAAA
15039731 AACATAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAATAAAAAAAT
Done.