Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 54 of 292
Found at i:15801377 original size:19 final size:19
Alignment explanation
Indices: 15801355--15801396 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
15801345 TATGTTTAGT
*
15801355 TTAA-TTAATTAAAGGTTAA
1 TTAAGTTAATT-AAGATTAA
15801374 TTAAGTTAATTAAGATTAA
1 TTAAGTTAATTAAGATTAA
15801393 TTAA
1 TTAA
15801397 AAGTTAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (19 bp):
TTAAGTTAATTAAGATTAA
Found at i:15812449 original size:23 final size:23
Alignment explanation
Indices: 15812422--15812468 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
15812412 AGATAATAAG
15812422 TAAAGAAATTGCATAATTTAGAT
1 TAAAGAAATTGCATAATTTAGAT
15812445 TAAAGAAATTGCATAATTTAGAT
1 TAAAGAAATTGCATAATTTAGAT
15812468 T
1 T
15812469 GATAATGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (23 bp):
TAAAGAAATTGCATAATTTAGAT
Found at i:15813181 original size:9 final size:9
Alignment explanation
Indices: 15813155--15813201 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
15813145 ATACAGAAAT
*
15813155 AAAGTTTAA
1 AAAGTCTAA
15813164 AAA-TCTAA
1 AAAGTCTAA
*
15813172 ACAGTCTAA
1 AAAGTCTAA
15813181 AAAGTCTAA
1 AAAGTCTAA
* *
15813190 AGAGTCCAA
1 AAAGTCTAA
15813199 AAA
1 AAA
15813202 TTTACAGAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
8 6 0.19
9 25 0.81
ACGTcount: A:0.55, C:0.13, G:0.11, T:0.21
Consensus pattern (9 bp):
AAAGTCTAA
Found at i:15813188 original size:18 final size:17
Alignment explanation
Indices: 15813161--15813202 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
15813151 AAATAAAGTT
15813161 TAAAAATCTAAACAGTC
1 TAAAAATCTAAACAGTC
*
15813178 TAAAAAGTCTAAAGAGTC
1 TAAAAA-TCTAAACAGTC
*
15813196 CAAAAAT
1 TAAAAAT
15813203 TTACAGAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (17 bp):
TAAAAATCTAAACAGTC
Found at i:15814397 original size:21 final size:21
Alignment explanation
Indices: 15814346--15814397 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
15814336 AGCTAGAAGG
* * *
15814346 AGAACAAAATTGAATTGAAGA
1 AGAAAAAAATTAAATTGAAAA
*
15814367 AGAAACAAATTAAATTGAAAA
1 AGAAAAAAATTAAATTGAAAA
15814388 AGAAAAAAAT
1 AGAAAAAAAT
15814398 AGATTGCACA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.65, C:0.04, G:0.13, T:0.17
Consensus pattern (21 bp):
AGAAAAAAATTAAATTGAAAA
Found at i:15817086 original size:27 final size:28
Alignment explanation
Indices: 15817056--15817125 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
15817046 ATAGTGAATC
*
15817056 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
15817083 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
*
15817111 CGCACACTTCGTGCT
1 CGCACACTTAGTGCT
15817126 GTACAATTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 21 0.58
28 15 0.42
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:15817197 original size:42 final size:42
Alignment explanation
Indices: 15817133--15817239 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
15817123 GCTGTACAAT
* *
15817133 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
15817175 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
15817217 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
15817240 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:15820348 original size:15 final size:16
Alignment explanation
Indices: 15820328--15820358 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15820318 TATAACTTTG
15820328 ACAAAT-AAAATAAAA
1 ACAAATAAAAATAAAA
15820343 ACAAATAAAAATAAAA
1 ACAAATAAAAATAAAA
15820359 TAGAGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (16 bp):
ACAAATAAAAATAAAA
Found at i:15826756 original size:40 final size:38
Alignment explanation
Indices: 15826626--15826773 Score: 111
Period size: 40 Copynumber: 3.8 Consensus size: 38
15826616 TGAGAAATTG
* * *
15826626 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * * *
15826666 AAT-TATAACCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
15826703 ATTGGCTACATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
15826743 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
15826774 CTTGGTGCGG
Statistics
Matches: 84, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
37 4 0.05
38 2 0.02
39 3 0.04
40 75 0.89
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:15834879 original size:40 final size:39
Alignment explanation
Indices: 15834714--15834897 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
15834704 AAATTGAATG
* * *
15834714 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
15834754 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
15834794 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
15834834 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
15834873 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
15834898 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:15834922 original size:80 final size:81
Alignment explanation
Indices: 15834754--15834942 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
15834744 GCTGGAAATT
* * * *
15834754 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
15834819 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
15834835 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
15834898 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
15834914 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
15834943 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:15840434 original size:40 final size:40
Alignment explanation
Indices: 15840340--15840563 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
15840330 TATTCGAATG
*
15840340 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
15840381 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
15840421 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
15840461 ATATCCGGGCTAA-ACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
15840500 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
15840540 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
15840564 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 39 0.25
40 89 0.56
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:15840519 original size:79 final size:80
Alignment explanation
Indices: 15840340--15840599 Score: 312
Period size: 79 Copynumber: 3.3 Consensus size: 80
15840330 TATTCGAATG
* * * *
15840340 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
15840405 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * *
15840421 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAA-ACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
15840485 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
15840500 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
15840565 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
15840579 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
15840600 ATTACTTGAG
Statistics
Matches: 155, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
78 15 0.10
79 80 0.52
80 28 0.18
81 32 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:15840553 original size:119 final size:119
Alignment explanation
Indices: 15840340--15840599 Score: 314
Period size: 119 Copynumber: 2.2 Consensus size: 119
15840330 TATTCGAATG
* * *
15840340 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAA-ACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
15840405 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
65 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* *
15840461 ATATCCGGGCTAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGGC
* * *
15840524 ATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 ATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
15840579 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAA-CCCGAAG
15840600 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 13, Indels: 11
0.84 0.09 0.08
Matches are distributed among these distances:
117 8 0.07
118 26 0.21
119 57 0.47
120 18 0.15
121 13 0.11
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (119 bp):
ATATCCGGGCTAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCA
TTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:15848587 original size:40 final size:40
Alignment explanation
Indices: 15848493--15848717 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
15848483 TATTCGAATG
*
15848493 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
15848534 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
15848574 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
15848614 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
15848654 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
15848694 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
15848718 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:15848673 original size:80 final size:80
Alignment explanation
Indices: 15848493--15848753 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
15848483 TATTCGAATG
* * * *
15848493 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
15848558 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
15848574 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
15848639 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
15848654 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
15848719 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
15848733 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
15848754 ATTACTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 95 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:15848707 original size:120 final size:120
Alignment explanation
Indices: 15848493--15848753 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
15848483 TATTCGAATG
* * *
15848493 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
15848558 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
15848614 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
15848677 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
15848733 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
15848754 ATTACTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:15857229 original size:129 final size:129
Alignment explanation
Indices: 15856999--15857251 Score: 443
Period size: 129 Copynumber: 2.0 Consensus size: 129
15856989 TCATTGTAAG
*
15856999 AATACTAGGAATACGGGTCGTAAGGATCATTTGTCGGGTAACCACCTTCCCATCCTTTCTTGTCA
1 AATACGAGGAATACGGGTCGTAAGGATCATTTGTCGGGTAACCACCTTCCCATCCTTTCTTGTCA
*
15857064 CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAGGATCATATCATTGTCTCCCATAAC
66 CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAAGATCATATCATTGTCTCCCATAAC
* *
15857128 AATACGAGGAATACGGGTCGTAAGGATCATTTGTCGGGTAACCACCTTCCCATCTTTTCTTGTCG
1 AATACGAGGAATACGGGTCGTAAGGATCATTTGTCGGGTAACCACCTTCCCATCCTTTCTTGTCA
* * *
15857193 CTCTCTACCAGATCGGTATAACTATACGAATTATAACAAAGATCATATCGTTGTCTCCC
66 CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAAGATCATATCATTGTCTCCC
15857252 GTAAGGGCCA
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
129 117 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (129 bp):
AATACGAGGAATACGGGTCGTAAGGATCATTTGTCGGGTAACCACCTTCCCATCCTTTCTTGTCA
CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAAGATCATATCATTGTCTCCCATAAC
Found at i:15864515 original size:71 final size:71
Alignment explanation
Indices: 15864427--15864590 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
15864417 GAGATGTATC
15864427 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
15864492 AGGACA
66 AGGACA
*
15864498 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
15864563 CGGACA
66 AGGACA
15864569 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
15864591 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:15872970 original size:25 final size:25
Alignment explanation
Indices: 15872941--15872998 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
15872931 AATTCACCAT
* * *
15872941 AAAGGCTTTCCAAATATTTCTTCAC
1 AAAGGCTTTACAAAGATTTCGTCAC
15872966 AAAGGCTTTACAAAGATTTCGTCAC
1 AAAGGCTTTACAAAGATTTCGTCAC
15872991 AAAGGCTT
1 AAAGGCTT
15872999 GGTTTGGCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (25 bp):
AAAGGCTTTACAAAGATTTCGTCAC
Found at i:15874652 original size:40 final size:40
Alignment explanation
Indices: 15874582--15874719 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
15874572 AAACCAAGTA
* * *
15874582 CCTTTGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
15874621 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
15874661 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
15874701 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
15874720 TTATCATCCG
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 13 0.14
40 79 0.86
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:15878907 original size:20 final size:21
Alignment explanation
Indices: 15878871--15878913 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
15878861 ACAAACATAT
15878871 TACATAATAACTATTTTA-AC
1 TACATAATAACTATTTTATAC
*
15878891 TACATAATCAC-ATTTTTATAC
1 TACATAATAACTA-TTTTATAC
15878912 TA
1 TA
15878914 AAACATAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 15 0.75
21 4 0.20
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (21 bp):
TACATAATAACTATTTTATAC
Found at i:15881588 original size:40 final size:40
Alignment explanation
Indices: 15881543--15881767 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
15881533 CTTGCACAAG
* * * *
15881543 GCCTTCGAGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
15881583 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
15881623 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
15881663 GCCTTCAGGTCTTAGCCCGAATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
15881703 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
15881744 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
15881768 CATTCGAATA
Statistics
Matches: 154, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.81
41 29 0.19
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:15881641 original size:80 final size:80
Alignment explanation
Indices: 15881507--15881767 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
15881497 CTCAAGTAAT
* * * * * * * *
15881507 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGAGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
15881570 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
15881585 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
15881649 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * * *
15881665 CTTCAGGTCTTAGCCCGAATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
15881730 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
15881746 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
15881768 CATTCGAATA
Statistics
Matches: 150, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.11
80 91 0.61
81 31 0.21
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:15884892 original size:56 final size:58
Alignment explanation
Indices: 15884821--15884938 Score: 143
Period size: 56 Copynumber: 2.1 Consensus size: 58
15884811 CCTTGTTCAT
* * * *
15884821 TTTTCATTTTCATTTTGGA-AAGAACCA-CATCATTTCCAAATGATTCC-AATTCTCTA
1 TTTTAATTTTCATTTTGCAGAA-AACCATAATCATTTCCAAATGATTCCTAATTCTCCA
* * *
15884877 TTTTAATTTTCATTTTGCAGAAAACCATAATCATTTTCAAATGTTTCCTATTTCTCCA
1 TTTTAATTTTCATTTTGCAGAAAACCATAATCATTTCCAAATGATTCCTAATTCTCCA
15884935 TTTT
1 TTTT
15884939 CACCACTTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
56 22 0.42
57 19 0.37
58 11 0.21
ACGTcount: A:0.29, C:0.19, G:0.06, T:0.46
Consensus pattern (58 bp):
TTTTAATTTTCATTTTGCAGAAAACCATAATCATTTCCAAATGATTCCTAATTCTCCA
Found at i:15886818 original size:19 final size:19
Alignment explanation
Indices: 15886794--15886830 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
15886784 AACATATAAC
15886794 ATAGAGAAACACTATTAAT
1 ATAGAGAAACACTATTAAT
15886813 ATAGAGAAACACTATTAA
1 ATAGAGAAACACTATTAA
15886831 AGCTAATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.24
Consensus pattern (19 bp):
ATAGAGAAACACTATTAAT
Found at i:15887566 original size:26 final size:26
Alignment explanation
Indices: 15887532--15887639 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
15887522 TGGTACAAAT
*
15887532 TGATGATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
15887558 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15887584 TGATAATGGGTTATGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
15887610 TGATAATAGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15887636 TGAT
1 TGAT
15887640 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15894634 original size:26 final size:26
Alignment explanation
Indices: 15894605--15894712 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
15894595 TGGTACAAAT
15894605 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
15894631 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15894657 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
15894683 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15894709 TGAT
1 TGAT
15894713 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15900342 original size:80 final size:80
Alignment explanation
Indices: 15900175--15900383 Score: 215
Period size: 80 Copynumber: 2.6 Consensus size: 80
15900165 ATATAAAATG
* * * * * *
15900175 ACATAAACACCCTCAAAATAAATCTTTATTACTTTGTAAAAGGAATAAGTTTTTGGTAATTTTAT
1 ACATAAACACCCTCAAAAT-AATATTTATTACTTTATAAAAAGAATAAATTTTTAGTAATTTTAC
* ***
15900240 AACTGAGTTGAGTTGA
65 AACTGAATTGAGACAA
* *
15900256 GCATAAATACCCTCAAAATAATATTTATTACTTTATAAAAAGAATAAATTTTTAGT-ATTTTCAC
1 ACATAAACACCCTCAAAATAATATTTATTACTTTATAAAAAGAATAAATTTTTAGTAATTTT-AC
* *
15900320 AATTGAATTGGGACAA
65 AACTGAATTGAGACAA
* * **
15900336 ATATAAACATCCTCAAAATAATATTTATTGTTTTATAAATAA-AATAAA
1 ACATAAACACCCTCAAAATAATATTTATTACTTTATAAA-AAGAATAAA
15900384 CTTTCAATAA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
79 5 0.05
80 82 0.77
81 19 0.18
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.37
Consensus pattern (80 bp):
ACATAAACACCCTCAAAATAATATTTATTACTTTATAAAAAGAATAAATTTTTAGTAATTTTACA
ACTGAATTGAGACAA
Found at i:15902202 original size:15 final size:15
Alignment explanation
Indices: 15902172--15902200 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
15902162 ACTATTAGTA
15902172 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
15902187 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
15902201 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:15909426 original size:67 final size:67
Alignment explanation
Indices: 15909344--15909477 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
15909334 TCTATTCTTG
15909344 AACTATAACCAGAGGTGTCTATAAGTAAAGCTGCGACTTGAAATATTTTTATCTCTTCCCCAAGA
1 AACTATAACCAGAGGTGTCTATAAGTAAAGCTGCGACTTGAAATATTTTTATCTCTTCCCCAAGA
15909409 GC
66 GC
*
15909411 AACTATAACCAGAGGTGTCTGTAAGTAAAGCTGCGACTTGAAATATTTTTATCTCTTCCCCAAGA
1 AACTATAACCAGAGGTGTCTATAAGTAAAGCTGCGACTTGAAATATTTTTATCTCTTCCCCAAGA
15909476 GC
66 GC
15909478 TTGATATGGG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (67 bp):
AACTATAACCAGAGGTGTCTATAAGTAAAGCTGCGACTTGAAATATTTTTATCTCTTCCCCAAGA
GC
Found at i:15913874 original size:13 final size:13
Alignment explanation
Indices: 15913856--15913880 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15913846 TACTTTAAAA
15913856 TTTATTAAAAACT
1 TTTATTAAAAACT
15913869 TTTATTAAAAAC
1 TTTATTAAAAAC
15913881 CCATAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATTAAAAACT
Found at i:15917428 original size:13 final size:13
Alignment explanation
Indices: 15917410--15917447 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
15917400 ATAGTTCAAC
15917410 TAGAGAATTTTAT
1 TAGAGAATTTTAT
15917423 TAGAGAATTTTAT
1 TAGAGAATTTTAT
*
15917436 TAAAAGAATTTT
1 T-AGAGAATTTT
15917448 CTTGAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TAGAGAATTTTAT
Found at i:15918074 original size:16 final size:16
Alignment explanation
Indices: 15918055--15918091 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
15918045 TCGTAATCAA
15918055 TTACTGTCATTTTGCC
1 TTACTGTCATTTTGCC
15918071 TTACTGTCATTTTGCC
1 TTACTGTCATTTTGCC
15918087 TTACT
1 TTACT
15918092 TTAGCCATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.14, C:0.24, G:0.11, T:0.51
Consensus pattern (16 bp):
TTACTGTCATTTTGCC
Found at i:15921647 original size:14 final size:13
Alignment explanation
Indices: 15921627--15921663 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
15921617 AATATTTGAC
15921627 TTGTTCTTAATTA
1 TTGTTCTTAATTA
15921640 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
15921654 TTGTT-TTAAT
1 TTGTTCTTAAT
15921664 ATTCCAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:15924962 original size:30 final size:30
Alignment explanation
Indices: 15924926--15925026 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
15924916 GACAAGATTG
* * *
15924926 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
15924956 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
15924984 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
15925013 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
15925027 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:15925038 original size:29 final size:28
Alignment explanation
Indices: 15924955--15925030 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
15924945 AAAATTGTAC
* *
15924955 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
15924983 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
15925012 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
15925031 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:15926809 original size:26 final size:26
Alignment explanation
Indices: 15926779--15926829 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15926769 AATTCAAAAT
15926779 CAATCAATTTATCATATTCATTAATA
1 CAATCAATTTATCATATTCATTAATA
15926805 CAATCAATTTATCATATTCATTAAT
1 CAATCAATTTATCATATTCATTAAT
15926830 TCCAATAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (26 bp):
CAATCAATTTATCATATTCATTAATA
Found at i:15931985 original size:22 final size:21
Alignment explanation
Indices: 15931955--15932020 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
15931945 TACAAATTAA
15931955 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
15931977 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
15931998 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
15932017 ATCT
1 ATCT
15932021 AACATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:15932007 original size:19 final size:19
Alignment explanation
Indices: 15931972--15932069 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
15931962 AGATTACAAG
15931972 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
15931993 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
15932012 ATCATATCTAACATTG--T
1 ATCATATCTAAGATTGCAT
15932029 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
15932048 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
15932067 ATC
1 ATC
15932070 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:15932036 original size:36 final size:36
Alignment explanation
Indices: 15931992--15932063 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
15931982 CAAGATTGCA
15931992 TATCATATCTAAGATTGCATATCATATCTAACATTG
1 TATCATATCTAAGATTGCATATCATATCTAACATTG
*
15932028 TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 TATCATATCTAAGATTGCATATCATATCTAACATTG
15932064 CATATCCTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (36 bp):
TATCATATCTAAGATTGCATATCATATCTAACATTG
Found at i:15932078 original size:36 final size:35
Alignment explanation
Indices: 15931972--15932079 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
15931962 AGATTACAAG
*
15931972 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTGCATATC--CT-TAAGATTGCAT
*
15932012 ATCATATCTAACATTGTATCATAT-C-TAAGATTGCAT
1 ATCATATCTAAGATTG---CATATCCTTAAGATTGCAT
15932048 ATCATATCTAAGATTGCATATCCTTAAAGATT
1 ATCATATCTAAGATTGCATATCCTT-AAGATT
15932080 ATATTTCCCT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 5 0.08
34 1 0.02
35 1 0.02
36 32 0.54
38 6 0.10
39 1 0.02
40 8 0.14
41 5 0.08
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (35 bp):
ATCATATCTAAGATTGCATATCCTTAAGATTGCAT
Found at i:15932201 original size:6 final size:6
Alignment explanation
Indices: 15932192--15932229 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
15932182 TTGGACTTTG
*
15932192 TTTTAT TTTTA- TTTTAT TTTTAT TTTT-T TATTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
15932230 TTGAACTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 9 0.32
6 19 0.68
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:15932208 original size:11 final size:11
Alignment explanation
Indices: 15932192--15932228 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
15932182 TTGGACTTTG
15932192 TTTTATTTTTA
1 TTTTATTTTTA
15932203 TTTTATTTTTA
1 TTTTATTTTTA
15932214 TTTT-TTTATTA
1 TTTTATTT-TTA
15932225 TTTT
1 TTTT
15932229 TTTGAACTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 3 0.12
11 22 0.88
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:15932214 original size:17 final size:17
Alignment explanation
Indices: 15932192--15932229 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
15932182 TTGGACTTTG
15932192 TTTTATTTTTATT-TTAT
1 TTTTATTTTT-TTATTAT
15932209 TTTTATTTTTTTATTAT
1 TTTTATTTTTTTATTAT
15932226 TTTT
1 TTTT
15932230 TTGAACTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTATTTTTTTATTAT
Found at i:15938524 original size:30 final size:30
Alignment explanation
Indices: 15938469--15938599 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
15938459 ATAGTGAATC
*
15938469 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
15938498 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
15938528 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
15938556 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
15938586 CGCACACTTAGTGC
1 CGCACACTTAGTGC
15938600 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:15938579 original size:58 final size:58
Alignment explanation
Indices: 15938468--15938599 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
15938458 TATAGTGAAT
* * * * *
15938468 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
15938527 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
15938585 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
15938600 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:15946480 original size:30 final size:30
Alignment explanation
Indices: 15946425--15946555 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
15946415 ATAGTGAATC
*
15946425 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
15946454 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
15946484 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
15946512 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
15946542 CGCACACTTAGTGC
1 CGCACACTTAGTGC
15946556 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:15946535 original size:58 final size:58
Alignment explanation
Indices: 15946424--15946555 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
15946414 TATAGTGAAT
* * * * *
15946424 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
15946483 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
15946541 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
15946556 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:15971390 original size:53 final size:49
Alignment explanation
Indices: 15971207--15971356 Score: 273
Period size: 49 Copynumber: 3.0 Consensus size: 49
15971197 GTACATAATA
*
15971207 ATATATGTATATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGT-GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
15971257 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
15971306 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
15971355 AT
1 AT
15971357 CTATATATGT
Statistics
Matches: 98, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
49 90 0.92
50 8 0.08
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:15972962 original size:29 final size:29
Alignment explanation
Indices: 15972928--15973003 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
15972918 TACTCGATTT
* * *
15972928 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
15972957 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
15972986 CGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
15973004 TATTTCCACC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:15973020 original size:29 final size:29
Alignment explanation
Indices: 15972988--15973059 Score: 126
Period size: 29 Copynumber: 2.5 Consensus size: 29
15972978 TTCGAGCTCG
15972988 CACACTTAGTGCCATATATTTCCACCATA
1 CACACTTAGTGCCATATATTTCCACCATA
* *
15973017 CACACTTAGTGCCATATATTTCCAGCATG
1 CACACTTAGTGCCATATATTTCCACCATA
15973046 CACACTTAGTGCCA
1 CACACTTAGTGCCA
15973060 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.29, C:0.31, G:0.11, T:0.29
Consensus pattern (29 bp):
CACACTTAGTGCCATATATTTCCACCATA
Found at i:15980769 original size:50 final size:50
Alignment explanation
Indices: 15980694--15980922 Score: 262
Period size: 50 Copynumber: 4.6 Consensus size: 50
15980684 CTAGTACGCA
*
15980694 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACATG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* * * * *
15980744 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCAGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
* * * * * * * * * *
15980794 TATTAGCCTGCACTTAGAACTACACATGTGATCGAAGCTATCGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAA-CAATCTGGTACACG
* * *
15980845 TAGTAGCCTGCACTTAGTACTACACATGCGACCCAACAATTTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
15980895 TAGTAGCCTGA-ACTTAGTACTACACATG
1 TAGTAGCCT-ACACTTAGTACTACACATG
15980923 TCTTCTCACA
Statistics
Matches: 149, Mismatches: 28, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
50 109 0.73
51 40 0.27
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
Found at i:15987702 original size:61 final size:63
Alignment explanation
Indices: 15987569--15987702 Score: 143
Period size: 60 Copynumber: 2.2 Consensus size: 63
15987559 ACTGGGCCTA
* **
15987569 AGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCACATATCAATATTAATCTGGGCCAT
1 AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCACATATCAATATCAATCTACGCCAT
* * * * * *
15987631 AGCCCT-TTACAG-TATCAGAG-TATACTGGG-CTTAGCCCATATCAGTGTCAATTTACGCCGT
1 AGCCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCACATATCAATATCAATCTACGCCAT
15987691 AGCCCTATTACA
1 AGCCCTATTACA
15987703 AGTTGAGATA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
60 31 0.52
61 20 0.33
62 9 0.15
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (63 bp):
AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCACATATCAATATCAATCTACGCCAT
Found at i:15989269 original size:25 final size:23
Alignment explanation
Indices: 15989215--15989269 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
15989205 TTTCGGGTAG
15989215 AGAAG-AAAAGAAGGAGAAAAGA
1 AGAAGAAAAAGAAGGAGAAAAGA
* *
15989237 AAATAGAAAAAGAGAGGAGAAGAGA
1 AGA-AGAAAAAGA-AGGAGAAAAGA
15989262 AGGAAGAA
1 A-GAAGAA
15989270 TTCGACACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 2 0.08
24 6 0.23
25 15 0.58
26 1 0.04
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (23 bp):
AGAAGAAAAAGAAGGAGAAAAGA
Found at i:15992086 original size:22 final size:22
Alignment explanation
Indices: 15992061--15992119 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
15992051 TTCAAGCAAA
15992061 GAAT-AGGCTGAAAAAGAAAAGG
1 GAATCAGGC-GAAAAAGAAAAGG
* *
15992083 GAATCGGGCGAGAAAGAAAAGG
1 GAATCAGGCGAAAAAGAAAAGG
* *
15992105 GAATCGGGGGAAAAA
1 GAATCAGGCGAAAAA
15992120 ATAAAACGGC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 29 0.91
23 3 0.09
ACGTcount: A:0.49, C:0.07, G:0.37, T:0.07
Consensus pattern (22 bp):
GAATCAGGCGAAAAAGAAAAGG
Found at i:15992269 original size:41 final size:41
Alignment explanation
Indices: 15992222--15992355 Score: 144
Period size: 41 Copynumber: 3.3 Consensus size: 41
15992212 GGTAAAAACA
* *
15992222 CCGCTATTTCCTTACCTTTTGCGGCATTTATGGTAAAAATG
1 CCGCTATTGCCTTACCTTTTGCGGCATTTATGGAAAAAATG
* * * ***
15992263 TCGCTATTGCCTAACC-TTTACGATGTTTATGGAAAAAATG
1 CCGCTATTGCCTTACCTTTTGCGGCATTTATGGAAAAAATG
* * * *
15992303 CCACTATTGCCTTACCTTTTGCGGCATTTGTGGCAGAAATG
1 CCGCTATTGCCTTACCTTTTGCGGCATTTATGGAAAAAATG
*
15992344 CCACTATTGCCT
1 CCGCTATTGCCT
15992356 GTCTTTTAAG
Statistics
Matches: 74, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 32 0.43
41 42 0.57
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (41 bp):
CCGCTATTGCCTTACCTTTTGCGGCATTTATGGAAAAAATG
Found at i:15994715 original size:43 final size:43
Alignment explanation
Indices: 15994668--15994761 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
15994658 CCCGGATAGT
* *
15994668 GTCTTACACGAAATC-GATTAACGATGCCAATATCCCAGACATG
1 GTCTTACACGAAATCTGAAT-ACAATGCCAATATCCCAGACATG
* * * *
15994711 GTCTTACACGTAATCTGAATCCAATGCCAATGTCCCAGACATT
1 GTCTTACACGAAATCTGAATACAATGCCAATATCCCAGACATG
15994754 GTCTTACA
1 GTCTTACA
15994762 TGTAATCATA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
43 41 0.93
44 3 0.07
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.27
Consensus pattern (43 bp):
GTCTTACACGAAATCTGAATACAATGCCAATATCCCAGACATG
Found at i:15994914 original size:26 final size:26
Alignment explanation
Indices: 15994884--15994933 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15994874 TTCATAGCAA
*
15994884 TTCAATGATAATAAAACATATATAAT
1 TTCAATAATAATAAAACATATATAAT
15994910 TTCAATAATAATAAAACATATATA
1 TTCAATAATAATAAAACATATATA
15994934 TGAACTTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34
Consensus pattern (26 bp):
TTCAATAATAATAAAACATATATAAT
Found at i:15997830 original size:43 final size:43
Alignment explanation
Indices: 15997735--15997900 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
15997725 ATCGAGATGT
* * *
15997735 GATTACATGTAAGACCATGTATGGGACATTGGCCTTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
* *
15997778 GATTACGTGTAAGACAATGTCTGGGACATTGGCATTATTAATT-A
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATT-GT-ATTGA
* * * * *
15997822 -ATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGA
* * * *
15997864 GATAACATGTAAGACCATATCTGGGATA-TGGCATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGT
15997901 TCGAGCTTAT
Statistics
Matches: 98, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 7 0.07
43 83 0.85
44 2 0.02
45 3 0.03
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
Found at i:16005210 original size:69 final size:68
Alignment explanation
Indices: 16005132--16005326 Score: 201
Period size: 61 Copynumber: 3.0 Consensus size: 68
16005122 TTAATAAATC
* * *
16005132 TAATATTAAATTTAATTTAATATATATCTTGATAGTATTTTTATTAATTTAATATTAAAGTGATT
1 TAATATTAAATTTAATCTAATATTTATCTTGATAGTATTTATATTAATTTAATATTAAAGTGATT
16005197 ATCT
66 AT-T
* * ** *
16005201 TAATATTAAATTTAATGTAATATTTATCTTG-TA-AATAAATATT-CTATTAAT-TT-AA-T-A-
1 TAATATTAAATTTAATCTAATATTTATCTTGATAGTATTTATATTAAT-TTAATATTAAAGTGAT
*
16005258 GATT
65 TATT
* *
16005262 TAGTATTAAATTTAATCTAGTATTTATCTTGATAAGTA-TTATATTAATTTAATATTAAAGTGAT
1 TAATATTAAATTTAATCTAATATTTATCTTGAT-AGTATTTATATTAATTTAATATTAAAGTGAT
16005326 T
65 T
16005327 CAGTTCAATT
Statistics
Matches: 100, Mismatches: 16, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
61 29 0.29
62 3 0.03
63 12 0.12
64 5 0.05
65 4 0.04
66 4 0.04
67 12 0.12
68 2 0.02
69 29 0.29
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (68 bp):
TAATATTAAATTTAATCTAATATTTATCTTGATAGTATTTATATTAATTTAATATTAAAGTGATT
ATT
Found at i:16006988 original size:18 final size:19
Alignment explanation
Indices: 16006960--16006996 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
16006950 AAACCACAAA
*
16006960 CATAGCATTTGTATGTCAT
1 CATAGCATTTGTATCTCAT
16006979 CATA-CATTTGTATCTCAT
1 CATAGCATTTGTATCTCAT
16006997 ACTCATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43
Consensus pattern (19 bp):
CATAGCATTTGTATCTCAT
Found at i:16011819 original size:31 final size:31
Alignment explanation
Indices: 16011784--16011847 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
16011774 CCTTTTCATG
16011784 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
16011815 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
16011846 TT
1 TT
16011848 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:16012090 original size:24 final size:24
Alignment explanation
Indices: 16012039--16012181 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
16012029 GCTTTATCAT
*
16012039 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
16012064 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
16012088 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
16012111 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
16012135 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
16012159 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
16012182 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:16012118 original size:47 final size:48
Alignment explanation
Indices: 16012039--16012180 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
16012029 GCTTTATCAT
* *
16012039 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
16012088 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
16012135 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
16012181 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:16012139 original size:71 final size:72
Alignment explanation
Indices: 16012038--16012181 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
16012028 TGCTTTATCA
*
16012038 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
16012103 GCCCTTT
66 GCCCTTT
* * **
16012110 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
16012173 AGCCCTTT
65 AGCCCTTT
16012181 T
1 T
16012182 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:16012256 original size:20 final size:20
Alignment explanation
Indices: 16012231--16012291 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
16012221 TTATGATTAC
16012231 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
16012251 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
16012271 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
16012291 A
1 A
16012292 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:16012366 original size:25 final size:25
Alignment explanation
Indices: 16012334--16012381 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
16012324 ATACATAAAC
* * *
16012334 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
16012359 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
16012382 ATGGTATAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:16020251 original size:124 final size:124
Alignment explanation
Indices: 16020029--16020253 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
16020019 GAATTATGTG
* * * * * * *
16020029 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
16020094 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
16020153 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
16020218 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
16020254 CTGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:16020375 original size:40 final size:40
Alignment explanation
Indices: 16020248--16020377 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
16020238 TTGCTGGAAA
* * * *
16020248 TTATATCTGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
16020288 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
16020328 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
16020368 TTATATCCGG
1 TTATATCCGG
16020378 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:16023229 original size:30 final size:31
Alignment explanation
Indices: 16023195--16023257 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
16023185 CCTTTTCATG
16023195 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
16023225 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
16023256 TT
1 TT
16023258 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:16023499 original size:24 final size:24
Alignment explanation
Indices: 16023448--16023590 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
16023438 GCTTTATCAT
*
16023448 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
16023473 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
16023497 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
16023520 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
16023544 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
16023568 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
16023591 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:16023527 original size:47 final size:48
Alignment explanation
Indices: 16023448--16023589 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
16023438 GCTTTATCAT
* *
16023448 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
16023497 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
16023544 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
16023590 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:16023548 original size:71 final size:72
Alignment explanation
Indices: 16023447--16023590 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
16023437 TGCTTTATCA
*
16023447 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
16023512 GCCCTTT
66 GCCCTTT
* * **
16023519 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
16023582 AGCCCTTT
65 AGCCCTTT
16023590 T
1 T
16023591 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:16023665 original size:20 final size:20
Alignment explanation
Indices: 16023640--16023700 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
16023630 TTATGATTAC
16023640 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
16023660 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
16023680 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
16023700 A
1 A
16023701 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:16023775 original size:25 final size:25
Alignment explanation
Indices: 16023743--16023790 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
16023733 ATACATAAAC
* * *
16023743 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
16023768 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
16023791 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:16031894 original size:14 final size:15
Alignment explanation
Indices: 16031875--16031904 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
16031865 ATATTTAACT
16031875 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
16031889 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
16031904 T
1 T
16031905 TTTGATATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:16042188 original size:49 final size:49
Alignment explanation
Indices: 16042132--16042376 Score: 258
Period size: 49 Copynumber: 4.9 Consensus size: 49
16042122 TAGACAAGGC
*
16042132 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
16042181 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * * *
16042231 CATTTGATA-GACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
1 TATCTGGTACG-CATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* *
16042282 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * ** * * * *
16042331 TATCCGATACATATAGTAACCTACGCTTAGTACTACACACGTGACC
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
16042377 TCACAATAGA
Statistics
Matches: 163, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 80 0.49
50 46 0.28
51 36 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:16046912 original size:33 final size:33
Alignment explanation
Indices: 16046865--16046930 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
16046855 GAATAAATTA
*
16046865 CTCCCCCTTAATAAAATTCATTTTCCATTTAAG
1 CTCCCCCTTAATAAAATTCATTTTCAATTTAAG
*
16046898 CTCCCCC-TATATAAAATTCGTTTTCAATTTAAG
1 CTCCCCCTTA-ATAAAATTCATTTTCAATTTAAG
16046931 GCTTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 2 0.07
33 28 0.93
ACGTcount: A:0.30, C:0.26, G:0.05, T:0.39
Consensus pattern (33 bp):
CTCCCCCTTAATAAAATTCATTTTCAATTTAAG
Found at i:16049204 original size:38 final size:39
Alignment explanation
Indices: 16049139--16049215 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 39
16049129 TTTAACCTTA
16049139 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
1 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
* * *
16049178 CAAC-TCCCTTAAGGTTTTTACTCAAAATCTTAAGATTG
1 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
16049216 AATTCTCTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 31 0.89
39 4 0.11
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (39 bp):
CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
Found at i:16049664 original size:21 final size:21
Alignment explanation
Indices: 16049638--16049679 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
16049628 AAACTTGGTA
*
16049638 AAAGGTATCTATACTTTTTGT
1 AAAGGTATCGATACTTTTTGT
16049659 AAAGGTATCGATACTTTTTGT
1 AAAGGTATCGATACTTTTTGT
16049680 GTAAATTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.45
Consensus pattern (21 bp):
AAAGGTATCGATACTTTTTGT
Found at i:16049918 original size:22 final size:24
Alignment explanation
Indices: 16049890--16049933 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
16049880 ATTTTGTTCA
16049890 ACTTTAACTT-TTAT-TCAAAAGC
1 ACTTTAACTTCTTATATCAAAAGC
*
16049912 ACTTTAATTTCTTATATCAAAA
1 ACTTTAACTTCTTATATCAAAA
16049934 CATATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (24 bp):
ACTTTAACTTCTTATATCAAAAGC
Found at i:16054506 original size:41 final size:45
Alignment explanation
Indices: 16054401--16054508 Score: 109
Period size: 45 Copynumber: 2.5 Consensus size: 45
16054391 ATGTGTTTTT
* * * *
16054401 GTGTAAGACCAC-ATGTGGGACGTTGGCATCGATATATGTGGTTAC
1 GTGTAAGACC-CTATCTGGGACATCGGCATCGATATATGTGATTAC
* *
16054446 GTGTAAGACCATGTCTGGGACATCGGCATC-ATAT-T-TGATT-C
1 GTGTAAGACCCTATCTGGGACATCGGCATCGATATATGTGATTAC
*
16054487 GTGTAAGACCCTATTTGGGACA
1 GTGTAAGACCCTATCTGGGACA
16054509 GTGGTATTGA
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
41 20 0.38
42 4 0.08
43 1 0.02
44 4 0.08
45 24 0.45
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (45 bp):
GTGTAAGACCCTATCTGGGACATCGGCATCGATATATGTGATTAC
Found at i:16057782 original size:20 final size:19
Alignment explanation
Indices: 16057757--16057811 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
16057747 CATAAAATAT
16057757 CTGTTAATAAAATATCAAAA
1 CTGTTAATAAAATAT-AAAA
***
16057777 CTGTTAACTAATGCATAAAA
1 CTGTTAA-TAAAATATAAAA
16057797 CTGTTAATACAAATA
1 CTGTTAATA-AAATA
16057812 AATTCTAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
19 2 0.07
20 20 0.74
21 5 0.19
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.31
Consensus pattern (19 bp):
CTGTTAATAAAATATAAAA
Found at i:16062550 original size:27 final size:28
Alignment explanation
Indices: 16062520--16062579 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
16062510 CAGTTCAGCC
16062520 AATTTAAAACCCTAGGGGT-ATTTCGGT
1 AATTTAAAACCCTAGGGGTAATTTCGGT
* ** **
16062547 AATTTTACTCTTTAGGGGTAATTTCGGT
1 AATTTAAAACCCTAGGGGTAATTTCGGT
16062575 AATTT
1 AATTT
16062580 TGCTCTTTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 14 0.52
28 13 0.48
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.42
Consensus pattern (28 bp):
AATTTAAAACCCTAGGGGTAATTTCGGT
Found at i:16062571 original size:28 final size:28
Alignment explanation
Indices: 16062532--16062600 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
16062522 TTTAAAACCC
16062532 TAGGGGT-ATTTCGGTAATTTTACTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
*
16062559 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTACTCTT
16062587 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
16062601 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTACTCTT
Found at i:16066026 original size:16 final size:16
Alignment explanation
Indices: 16066005--16066037 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
16065995 ACTTATGTCT
16066005 ATTAGAAGCCACCTAA
1 ATTAGAAGCCACCTAA
16066021 ATTAGAAGCCACCTAA
1 ATTAGAAGCCACCTAA
16066037 A
1 A
16066038 GATGATCCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.12, T:0.18
Consensus pattern (16 bp):
ATTAGAAGCCACCTAA
Found at i:16076191 original size:41 final size:41
Alignment explanation
Indices: 16076146--16076263 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
16076136 TGAAAGATAA
16076146 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
16076187 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
16076217 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
16076258 ATGTAG
1 ATGTAG
16076264 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:16076202 original size:71 final size:71
Alignment explanation
Indices: 16076114--16076277 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
16076104 GAGATGTATC
16076114 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
16076179 AGGACA
66 AGGACA
16076185 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
16076250 AGGACA
66 AGGACA
16076256 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
16076278 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:16083689 original size:71 final size:71
Alignment explanation
Indices: 16083604--16083772 Score: 320
Period size: 71 Copynumber: 2.4 Consensus size: 71
16083594 GAGATGTATC
16083604 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGCTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGCTCGCATGCGTGATTCCAAGTGA
16083669 AGGACA
66 AGGACA
*
16083675 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGCTCGCATGCGTGATTCCAAGTGA
16083740 AGGACA
66 AGGACA
*
16083746 CCATGTAGACAAGAGAGCTACGAGAAA
1 CCATGTAGACAAGAGAGCTACGTGAAA
16083773 ATCGGTTAGG
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 96 1.00
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGCTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:16085551 original size:42 final size:42
Alignment explanation
Indices: 16085442--16085603 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 42
16085432 CGATATGCAT
* * *
16085442 TTTCGTGTAAGACCACGCCTGGGACGTTGACATCGACTTCT-A
1 TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGA-TTCTGA
* *
16085484 TTTTACGTGTAAGACCATGTGTGGGACATTGGCATC-ATATCTGA
1 -TTT-CGTGTAAGACCACGTCTGGGACATTGGCATCGAT-TCTGA
* *
16085528 TTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATGTTTGA
1 TTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TCTGA
* *
16085571 TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
1 TTTCGTGTAAGACCACGTCTGGGACATTGGCAT
16085604 TGTATAGGTT
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
42 28 0.28
43 44 0.44
44 28 0.28
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (42 bp):
TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATTCTGA
Found at i:16093281 original size:604 final size:605
Alignment explanation
Indices: 16092136--16093346 Score: 1887
Period size: 604 Copynumber: 2.0 Consensus size: 605
16092126 CGAGCAATCC
*
16092136 CACACCTAAAACAACAATTAACACCACCAGTTTCAATAATAATTAGTGAAATTTAACTAATAATC
1 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
*
16092201 AACCAAAACCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACGAACAGATAC
66 AACCAAAACCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACAAACAGATAC
* * *
16092266 TATGCAAAACCTAAGGCATTGGAGGAACAACCAACTGCTCTCGATTTTCACTTAACAATGTGCAA
131 TATGCAAAACCTAAGGCACTAGAGGAACAACCAACTGCTCTCGATTTTCACCTAACAATGTGCAA
* * *
16092331 ACAATTTGATTAAACAACTAAAACCCTGATTTCACTGCAAGATCACAACACACTAGCCAAAAACA
196 ACAATTAGATTAAACAACTAAAACCCCGATTACACTGCAAGATCACAACACACTAGCCAAAAACA
* * *
16092396 AAAAGAAGAACCTAACCTTCCCAAATATCACAACTTACCAGATAACTCAATAGCAAGAACAACCA
261 AAAACAAGAACCGAACCTTCCCAAATATCACAACTTACCAGATAACTCAATAGCAACAACAACCA
*
16092461 CAAAAAATCATGAGCAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAAAGATTGA
326 CAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAAAGATTGA
* *
16092526 AGAAAGAAAGAAAAAGAACCAAAAAATCAAAGAATGGAACTGCTGGCACATGGGAAAAAACGACT
391 AGAAAGAAAGAAAAAGAACCAAAAAATCAAAGAATGGAACTACTGGCACATGGGAAAAAACGACG
* *
16092591 TGAATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATGGAGCTATTTTTGGGGAACAAGAAAA
456 TGAATAGTAGGGTCTCAGGGAAACAAACGTGAAGTTAATGGAGCTATTTTTGGGGAAAAAGAAAA
* *
16092656 ATACTAAAGTCAAATAAATTAA-A-ACA-A-AAAAAAAAGATCATGTTGAACAAACTTCTACAAC
521 ATACTAAAGTCAAATAAATTAACACACACACAAAAAAAAGATCATGCTGAAAAAACTTCTACAAC
16092717 TAATCCAACTCATCAGAATT
586 TAATCCAACTCATCAGAATT
16092737 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
1 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
* ** * * * *
16092802 AACCACAACTTAACTACAATAGCCTTACAAAAAACCACATCCTCACACTTACCATTTAACAAACA
66 AACCAAAACCAAACTACAACAGCCCTACAAAAAAACACATCCTCACAC-T----TTGAACAAACA
** **
16092867 -ACTACTATGCAAAACCTAAGGTGCTAGAGGAACAACCAACTGCTCTCGATTTTCACCTAACTGT
126 GA-TACTATGCAAAACCTAAGGCACTAGAGGAACAACCAACTGCTCTCGATTTTCACCTAACAAT
* * * *
16092931 GTGCAAACAATTAGATTAAATAGCTAAAACCCCGATTACACTGCAAGATCACAACATAGTAGCC-
190 GTGCAAACAATTAGATTAAACAACTAAAACCCCGATTACACTGCAAGATCACAACACACTAGCCA
*
16092995 AAAACAAAAACAAGAACCGAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACAA
255 AAAACAAAAACAAGAACCGAACCTTCCCAAATATCACAACTTACCAGATAACTCAATAGCAACAA
* * *
16093060 CGACCACAAAAAATCGTGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAG-AAAAACAAA
320 CAACCACAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAAA
* * * *
16093124 GATTGAAGAAAGAAAGAAAAAGAATCAAAGAATTAGAGAATGGAACTACTGGCACATGGGAAAAA
385 GATTGAAGAAAGAAAGAAAAAGAACCAAAAAATCAAAGAATGGAACTACTGGCACATGGGAAAAA
* ** * * *
16093189 ACGACGTGAATAGTAGGGTTTTGGGGAAACAAATGTGATGTTAATGGAGTTATTTTTGGGGAAAA
450 ACGACGTGAATAGTAGGGTCTCAGGGAAACAAACGTGAAGTTAATGGAGCTATTTTTGGGGAAAA
*
16093254 AGAAAAATACTAGAGTCAAATAAATTAACACACACACAAAAAAAAGATCATGCTGAAAAAACTTC
515 AGAAAAATACTAAAGTCAAATAAATTAACACACACACAAAAAAAAGATCATGCTGAAAAAACTTC
16093319 TACAACTAATCCAACTCATCAGAATT
580 TACAACTAATCCAACTCATCAGAATT
16093345 CA
1 CA
16093347 AAATTTCCCT
Statistics
Matches: 552, Mismatches: 48, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
601 106 0.19
602 1 0.00
604 151 0.27
605 115 0.21
606 124 0.22
607 1 0.00
608 54 0.10
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (605 bp):
CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
AACCAAAACCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACAAACAGATAC
TATGCAAAACCTAAGGCACTAGAGGAACAACCAACTGCTCTCGATTTTCACCTAACAATGTGCAA
ACAATTAGATTAAACAACTAAAACCCCGATTACACTGCAAGATCACAACACACTAGCCAAAAACA
AAAACAAGAACCGAACCTTCCCAAATATCACAACTTACCAGATAACTCAATAGCAACAACAACCA
CAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAAAGATTGA
AGAAAGAAAGAAAAAGAACCAAAAAATCAAAGAATGGAACTACTGGCACATGGGAAAAAACGACG
TGAATAGTAGGGTCTCAGGGAAACAAACGTGAAGTTAATGGAGCTATTTTTGGGGAAAAAGAAAA
ATACTAAAGTCAAATAAATTAACACACACACAAAAAAAAGATCATGCTGAAAAAACTTCTACAAC
TAATCCAACTCATCAGAATT
Found at i:16095071 original size:40 final size:40
Alignment explanation
Indices: 16094967--16095094 Score: 123
Period size: 40 Copynumber: 3.2 Consensus size: 40
16094957 CGGAATATAA
*** *
16094967 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
* * * *
16095007 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * *
16095047 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGG-TCTTAGC
16095087 CCGGATAT
1 CCGGATAT
16095095 CATTCAATTT
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 70 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:16102960 original size:40 final size:40
Alignment explanation
Indices: 16102856--16102983 Score: 123
Period size: 40 Copynumber: 3.2 Consensus size: 40
16102846 CGGAATATAA
*** *
16102856 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
* * * *
16102896 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * *
16102936 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGG-TCTTAGC
16102976 CCGGATAT
1 CCGGATAT
16102984 CATTCAATTT
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 70 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:16114737 original size:93 final size:93
Alignment explanation
Indices: 16114625--16114796 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
16114615 GCCCATAAGT
* *
16114625 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
16114690 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
16114718 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
16114783 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
16114797 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:16114792 original size:46 final size:46
Alignment explanation
Indices: 16114617--16114792 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
16114607 TGTAACCCGC
* * *
16114617 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
16114663 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
16114713 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
16114756 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
16114793 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:16117196 original size:30 final size:30
Alignment explanation
Indices: 16117152--16117240 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
16117142 CAAAGATAAC
16117152 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
16117181 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
16117211 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
16117241 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:16117200 original size:15 final size:15
Alignment explanation
Indices: 16117152--16117231 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
16117142 CAAAGATAAC
*
16117152 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
16117166 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
16117181 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
16117196 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
16117211 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
16117226 AAGAAA
1 AAGAAA
16117232 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:16117240 original size:15 final size:15
Alignment explanation
Indices: 16117163--16117240 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
16117153 AGAAAACCGA
16117163 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
16117178 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
16117192 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
16117207 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
16117223 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
16117238 ATA
1 ATA
16117241 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:16120295 original size:93 final size:93
Alignment explanation
Indices: 16120183--16120354 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
16120173 GCCCATAAGT
* *
16120183 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
16120248 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
16120276 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
16120341 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
16120355 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:16120350 original size:46 final size:46
Alignment explanation
Indices: 16120175--16120350 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
16120165 TGTAACCCGC
* * *
16120175 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
16120221 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
16120271 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
16120314 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
16120351 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:16123626 original size:39 final size:39
Alignment explanation
Indices: 16123526--16123749 Score: 220
Period size: 40 Copynumber: 5.6 Consensus size: 39
16123516 TCGAATGATA
* **
16123526 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * * * *
16123565 ATCCGGACTAAGATCCAAAGGCATTTGTGAGAGTTAGTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
16123606 TCTGAGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
16123645 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
16123684 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
16123723 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
16123750 AACGAGTACC
Statistics
Matches: 152, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
39 70 0.46
40 74 0.49
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:16123704 original size:79 final size:80
Alignment explanation
Indices: 16123525--16123747 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 80
16123515 TTCGAATGAT
* ** * * *
16123525 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGACTATATCCGGACTAAGATCCAAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCAT
* *
16123589 TTGTGAGAGTTAGTAA
65 TGGTGAGAGTTACTAA
* * *
16123605 TTCTGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCAT
*
16123667 TGGTGCGAGTTACTAA
65 TGGTGAGAGTTACTAA
* * * * *
16123683 ATCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
16123748 TGAACGAGTA
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
78 31 0.26
79 59 0.50
80 29 0.24
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
GGTGAGAGTTACTAA
Found at i:16123771 original size:79 final size:78
Alignment explanation
Indices: 16123613--16123772 Score: 200
Period size: 79 Copynumber: 2.0 Consensus size: 78
16123603 AATTCTGAGC
* * **
16123613 TAAGCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTT
1 TAAGCCCAAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTT
16123678 ACTAAATCCGGGT
66 ACTAAATCCGGGT
* *
16123691 TAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAG-CCCAAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGA
*
16123755 G-TACCTATATCC-GGT
63 GTTA-CTAAATCCGGGT
16123770 TAA
1 TAA
16123773 ATTCCGAAGG
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
78 6 0.08
79 41 0.58
80 24 0.34
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (78 bp):
TAAGCCCAAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTT
ACTAAATCCGGGT
Found at i:16134387 original size:45 final size:45
Alignment explanation
Indices: 16134333--16134472 Score: 244
Period size: 45 Copynumber: 3.1 Consensus size: 45
16134323 GCTAGGCTCG
*
16134333 AGGCCCGAATAATATCTCACTGGCATTATAGCCTACTAGGTTCAA
1 AGGCCCGAATAATATCTCACCGGCATTATAGCCTACTAGGTTCAA
*
16134378 AGGCCCGAATAATGTCTCACCGGCATTATAGCCTACTAGGTTCAA
1 AGGCCCGAATAATATCTCACCGGCATTATAGCCTACTAGGTTCAA
* *
16134423 AGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGCTCAA
1 AGGCCCGAATAATATCTCACCGGCATTATAGCCTACTAGGTTCAA
16134468 AGGCC
1 AGGCC
16134473 TGAAATATTC
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 90 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
AGGCCCGAATAATATCTCACCGGCATTATAGCCTACTAGGTTCAA
Found at i:16137188 original size:6 final size:6
Alignment explanation
Indices: 16137177--16137215 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
16137167 AGTTGTTAAT
* *
16137177 TCTACC TCTACC TCTACA TCTACA TCTACA TCTACA TCT
1 TCTACA TCTACA TCTACA TCTACA TCTACA TCTACA TCT
16137216 CTATTAATTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.26, C:0.38, G:0.00, T:0.36
Consensus pattern (6 bp):
TCTACA
Found at i:16139365 original size:58 final size:58
Alignment explanation
Indices: 16139275--16139391 Score: 198
Period size: 58 Copynumber: 2.0 Consensus size: 58
16139265 TCTCTCTTGG
*
16139275 CGAACTCACTTTTTGTCAATACCTGAAACATAAAGATAACACTTGTAAGTTACACAAA
1 CGAACTCACTTTTCGTCAATACCTGAAACATAAAGATAACACTTGTAAGTTACACAAA
* **
16139333 CGAACTCACTTTTCGTCAATCCCTGAAACATAAAGATAATGCTTGTAAGTTACACAAA
1 CGAACTCACTTTTCGTCAATACCTGAAACATAAAGATAACACTTGTAAGTTACACAAA
16139391 C
1 C
16139392 TTATTGAGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.27
Consensus pattern (58 bp):
CGAACTCACTTTTCGTCAATACCTGAAACATAAAGATAACACTTGTAAGTTACACAAA
Found at i:16141121 original size:48 final size:48
Alignment explanation
Indices: 16141058--16141336 Score: 182
Period size: 48 Copynumber: 5.9 Consensus size: 48
16141048 CATCGGGTTG
* * * *
16141058 ATGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGAT
1 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGAT
* * * * * * *
16141106 GTGAGATCTCATATAAGGCCATGTTTGGGACATGGCTTTTGCATCGTT
1 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGAT
* * *
16141154 ATGTGATCCCATGTAAGACCATGTCCGGGACATGGCATTGGCATCGAT
1 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGAT
* * * *
16141202 AT-AGGA-CATCGTGTAAGACCATAGT-TGGG-CTATCGGC-TTCG-AT--AT
1 ATGA-GATC-CCATATAAGACCAT-GTCTGGGAC-AT-GGCATTGGCATCGAT
* ** * *
16141247 ATGTGATCCCATGCAAGACCCTATCTGGG-CATGGCATTGGCATCGAT
1 ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGAT
* * * **
16141294 AT-ATGGTCCCATGTAAGACCATATCTGGGATTTGGCATTGGCA
1 ATGA-GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCA
16141337 CGTTACCATG
Statistics
Matches: 178, Mismatches: 39, Indels: 28
0.73 0.16 0.11
Matches are distributed among these distances:
43 3 0.02
44 6 0.03
45 23 0.13
46 1 0.01
47 30 0.17
48 110 0.62
49 5 0.03
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (48 bp):
ATGAGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGAT
Found at i:16146060 original size:26 final size:26
Alignment explanation
Indices: 16146031--16146084 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
16146021 CCGGGTTAAG
16146031 ACCCGAAGGCAATTGTGCTAGTGGCT
1 ACCCGAAGGCAATTGTGCTAGTGGCT
16146057 ACCCGAAGGCAATTGTGCTAGTGGCT
1 ACCCGAAGGCAATTGTGCTAGTGGCT
16146083 AC
1 AC
16146085 ATCCGGGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (26 bp):
ACCCGAAGGCAATTGTGCTAGTGGCT
Found at i:16146105 original size:40 final size:40
Alignment explanation
Indices: 16146057--16146154 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
16146047 GCTAGTGGCT
*
16146057 ACCCGAAGGCAATTGTGCTAGTGGC-TAC-ATCCGGGCTAAG
1 ACCCGAAGGCAATTGTGCGAGT--CATACTATCCGGGCTAAG
*
16146097 ACCCGAAGGC-ATTCGTGCGAGTCATTCTATCCGGGCTAAG
1 ACCCGAAGGCAATT-GTGCGAGTCATACTATCCGGGCTAAG
*
16146137 ACCCGAAGGCATTTGTGC
1 ACCCGAAGGCAATTGTGC
16146155 AAATCGTGAT
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
38 1 0.02
39 5 0.10
40 43 0.84
41 2 0.04
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (40 bp):
ACCCGAAGGCAATTGTGCGAGTCATACTATCCGGGCTAAG
Found at i:16146168 original size:40 final size:40
Alignment explanation
Indices: 16146085--16146186 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
16146075 TAGTGGCTAC
* * **
16146085 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* *
16146125 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* * *
16146165 ATCCGGGTTAAGTCCCGTAGGC
1 ATCCGGGCTAAGACCCGAAGGC
16146187 CTTGGTGCGG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
Found at i:16154268 original size:40 final size:39
Alignment explanation
Indices: 16154143--16154286 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 39
16154133 ACCGTTGTGC
* * * *
16154143 TATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * * *
16154181 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-G
* *
16154222 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * *
16154261 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
16154287 CTTGGTGCGG
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
39 4 0.05
40 81 0.95
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
Found at i:16154295 original size:80 final size:81
Alignment explanation
Indices: 16154142--16154295 Score: 186
Period size: 80 Copynumber: 1.9 Consensus size: 81
16154132 GACCGTTGTG
* * * *
16154142 CTATACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGC
1 CTATACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGC
16154207 ATTCGTGCGAGTCATT
66 ATTCGTGCGAGTCATT
* * * * *
16154223 CTAT-CCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGG
1 CTATACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGG
* *
16154286 CCTTGGTGCG
65 CATTCGTGCG
16154296 GGTTACCATA
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
79 1 0.02
80 56 0.92
81 4 0.07
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (81 bp):
CTATACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGC
ATTCGTGCGAGTCATT
Found at i:16158650 original size:40 final size:40
Alignment explanation
Indices: 16158568--16158668 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
16158558 GGCATTAGTG
* * **
16158568 ATCCGGGCTAAGA-CCGAAGGCATTCGTGCGAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* *
16158607 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTGAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
* * *
16158647 ATCCGGGTTAAGTCCCGTAGGC
1 ATCCGGGCTAAGACCCGAAGGC
16158669 CTTGGTGCGG
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
39 13 0.25
40 39 0.75
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAATCATGAT
Found at i:16166651 original size:18 final size:18
Alignment explanation
Indices: 16166628--16166662 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
16166618 GCTACACCGG
16166628 GTAAGACCCGAAGGCATA
1 GTAAGACCCGAAGGCATA
16166646 GTAAGACCCGAAGGCAT
1 GTAAGACCCGAAGGCAT
16166663 TCGTGCGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.29, T:0.11
Consensus pattern (18 bp):
GTAAGACCCGAAGGCATA
Found at i:16166722 original size:40 final size:40
Alignment explanation
Indices: 16166647--16166740 Score: 107
Period size: 40 Copynumber: 2.4 Consensus size: 40
16166637 GAAGGCATAG
* * **
16166647 TAAGACCCGAAGGCATTCGTGCGAGTCATTCTATCCGGGC
1 TAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGC
* * *
16166687 TAAGACCCGAAGGCATTTGTGCAAATCGTGATATCCGGGT
1 TAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGC
* *
16166727 TAAGTCCCGTAGGC
1 TAAGACCCGAAGGC
16166741 CTTGGTGCGG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTCGTGCAAATCATGATATCCGGGC
Found at i:16171121 original size:15 final size:15
Alignment explanation
Indices: 16171101--16171131 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
16171091 AACCATAGGC
16171101 TATATCATAATGGAA
1 TATATCATAATGGAA
16171116 TATATCATAATGGAA
1 TATATCATAATGGAA
16171131 T
1 T
16171132 TGGTACATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.35
Consensus pattern (15 bp):
TATATCATAATGGAA
Found at i:16173173 original size:40 final size:39
Alignment explanation
Indices: 16173128--16173309 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
16173118 GCTACTCATT
*
16173128 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
* * *
16173168 TAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
*
16173208 CAAATGCCTTCGGG-CTTAGCCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
* * * **
16173246 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
16173287 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
16173310 ACATCATTCG
Statistics
Matches: 121, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
37 2 0.02
38 24 0.20
39 17 0.14
40 66 0.55
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:16173254 original size:78 final size:81
Alignment explanation
Indices: 16173128--16173309 Score: 232
Period size: 78 Copynumber: 2.3 Consensus size: 81
16173118 GCTACTCATT
* * *
16173128 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAATGCCTTCGGGA-CTTAACT-C
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTT-ACTCC
* **
16173191 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAACA
*
16173208 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
*
16173271 ATATAGTCACTTAACA
66 ATATAGTAACTTAACA
16173287 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
16173310 ACATCATTCG
Statistics
Matches: 90, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
77 5 0.06
78 45 0.50
79 26 0.29
80 14 0.16
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
ATATAGTAACTTAACA
Found at i:16181338 original size:79 final size:82
Alignment explanation
Indices: 16181226--16181410 Score: 247
Period size: 79 Copynumber: 2.3 Consensus size: 82
16181216 GCTACTCGTT
* *
16181226 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
16181289 GGATTTAGTAAC-TCGCA
65 GGATATAGCAACTTAGCA
**
16181306 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
16181369 GATATAGCCACTTAGCA
66 GATATAGCAACTTAGCA
16181386 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
16181411 CATCATTCGA
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.60
80 34 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGCAACTTAGCA
Done.