Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 6 of 292
Found at i:1598543 original size:15 final size:15
Alignment explanation
Indices: 1598523--1598553 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1598513 ATAAAAGCAC
*
1598523 TTAATTTTAGTTTCT
1 TTAATTATAGTTTCT
1598538 TTAATTATAGTTTCT
1 TTAATTATAGTTTCT
1598553 T
1 T
1598554 ATTCTACAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (15 bp):
TTAATTATAGTTTCT
Found at i:1607959 original size:25 final size:25
Alignment explanation
Indices: 1607924--1607974 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
1607914 TCATCTATAT
*
1607924 TTACTTGATTGATATGAAGATTTTG
1 TTACTTAATTGATATGAAGATTTTG
1607949 TTACTTAATTGATATGAAGATTTTG
1 TTACTTAATTGATATGAAGATTTTG
1607974 T
1 T
1607975 GACTAACATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.18, T:0.49
Consensus pattern (25 bp):
TTACTTAATTGATATGAAGATTTTG
Found at i:1610401 original size:268 final size:267
Alignment explanation
Indices: 1609924--1610461 Score: 1067
Period size: 268 Copynumber: 2.0 Consensus size: 267
1609914 GTTTGTCTAC
1609924 TAATACAAGCTGTCTTTCCGTATCACGATCCGACCATGTAATAATGCTCAGTATTACTTTACTTT
1 TAATACAAGCTGTCTTTCCGTATCACGATCCGACCATGTAATAATGCTCAGTATTACTTTACTTT
1609989 AAACATTAGACAACCAATTAGCAACATTTGTTTCCATTTTTCTTTGCATGCAAAAACCATTTGAA
66 AAACATTAGACAACCAATTAGCAACATTTGTTTCCATTTTTCTTTGCATGCAAAAACCATTTGAA
1610054 AACAATCATACAAAGTATATTAATGTAATCATTAAATTTGTTTTATTAATCAATCTATTCAAAAA
131 AACAATCATACAAAGTATATTAATGTAATCATTAAATTTGTTTTATTAATCAATCTATTCAAAAA
1610119 AATTACAAGTTTACAATTGAATATATTACACTCAGGGCACCAGATCCAACATAGGTTGTAGGGAG
196 AATTACAAGTTTACAATTGAATATATTACACTCAGGGCACCAGATCCAACATAGGTTGTA-GGAG
1610184 TACTGTTG
260 TACTGTTG
1610192 TAATACAAGCTGTCTTTCCGTATCACGATCCGACCATGTAATAATGCTCAGTATTACTTTACTTT
1 TAATACAAGCTGTCTTTCCGTATCACGATCCGACCATGTAATAATGCTCAGTATTACTTTACTTT
1610257 AAACATTAGACAACCAATTAGCAACATTTGTTTCCATTTTTCTTTGCATGCAAAAACCATTTGAA
66 AAACATTAGACAACCAATTAGCAACATTTGTTTCCATTTTTCTTTGCATGCAAAAACCATTTGAA
1610322 AACAATCATACAAAGTATATTAATGTAATCATTAAATTTGTTTTATTAATCAATCTATTCAAAAA
131 AACAATCATACAAAGTATATTAATGTAATCATTAAATTTGTTTTATTAATCAATCTATTCAAAAA
1610387 AATTACAAGTTTACAATTGAATATATTACACTCAGGGCACCAGATCCAACATAGGTTGTAGGAGT
196 AATTACAAGTTTACAATTGAATATATTACACTCAGGGCACCAGATCCAACATAGGTTGTAGGAGT
1610452 ACTGTTG
261 ACTGTTG
1610459 TAA
1 TAA
1610462 CACCCTAAAC
Statistics
Matches: 270, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
267 15 0.06
268 255 0.94
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.34
Consensus pattern (267 bp):
TAATACAAGCTGTCTTTCCGTATCACGATCCGACCATGTAATAATGCTCAGTATTACTTTACTTT
AAACATTAGACAACCAATTAGCAACATTTGTTTCCATTTTTCTTTGCATGCAAAAACCATTTGAA
AACAATCATACAAAGTATATTAATGTAATCATTAAATTTGTTTTATTAATCAATCTATTCAAAAA
AATTACAAGTTTACAATTGAATATATTACACTCAGGGCACCAGATCCAACATAGGTTGTAGGAGT
ACTGTTG
Found at i:1612998 original size:31 final size:31
Alignment explanation
Indices: 1612960--1613021 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
1612950 GCTTGCTTTT
1612960 GGATATATGACAGTCGCAATTAACTTTAAAC
1 GGATATATGACAGTCGCAATTAACTTTAAAC
1612991 GGATATATGACAGTCGCAATTAACTTTAAAC
1 GGATATATGACAGTCGCAATTAACTTTAAAC
1613022 CTTACCTGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (31 bp):
GGATATATGACAGTCGCAATTAACTTTAAAC
Found at i:1615324 original size:36 final size:36
Alignment explanation
Indices: 1615283--1615365 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
1615273 ACATTATAAA
* *
1615283 CACTGTCACATGGCATGAATAACATACCCACATATT
1 CACTGTCACATGGCATGAACAACACACCCACATATT
* * * **
1615319 TACTGTAACAGGGCATGAACAACACACCTTCATATT
1 CACTGTCACATGGCATGAACAACACACCCACATATT
*
1615355 CACTTTCACAT
1 CACTGTCACAT
1615366 CAGCCATCAT
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.27
Consensus pattern (36 bp):
CACTGTCACATGGCATGAACAACACACCCACATATT
Found at i:1617120 original size:2 final size:2
Alignment explanation
Indices: 1617113--1617141 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1617103 TCAGTGACGT
1617113 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1617142 TTCAAGCTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1619798 original size:17 final size:18
Alignment explanation
Indices: 1619785--1619909 Score: 91
Period size: 19 Copynumber: 6.9 Consensus size: 18
1619775 TAATCTTCAA
1619785 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
1619804 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
1619821 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
1619840 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
1619856 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
* *
1619875 TGAT-TGTAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
1619893 TGATATACAATCTTAGA
1 TGATATGCAATCTTAGA
1619910 AGATATGATT
Statistics
Matches: 89, Mismatches: 7, Indels: 20
0.77 0.06 0.17
Matches are distributed among these distances:
15 2 0.02
16 3 0.03
17 24 0.27
18 27 0.30
19 29 0.33
20 4 0.04
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:1619854 original size:35 final size:35
Alignment explanation
Indices: 1619792--1619909 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
1619782 CAATGATATG
*
1619792 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1619828 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
1619863 CAATCTTAGATATGATTGTAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
1619900 CAATCTTAGA
1 CAATCTTAGA
1619910 AGATATGATT
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 50 0.64
36 15 0.19
37 13 0.17
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:1619935 original size:22 final size:20
Alignment explanation
Indices: 1619829--1619945 Score: 70
Period size: 18 Copynumber: 6.0 Consensus size: 20
1619819 GATATGATAC
*
1619829 AATCTT-AGATATGA-TTGC
1 AATCTTGAGATATGATTTGT
**
1619847 AATCTT-AGATATGA--TAC
1 AATCTTGAGATATGATTTGT
1619864 AATCTT-AGATATGA-TTGT
1 AATCTTGAGATATGATTTGT
* **
1619882 AATCTT-AGATATGATATAC
1 AATCTTGAGATATGATTTGT
1619901 AATCTTAGAAGATATGATTTTGT
1 AATCTT-G-AGATATGA-TTTGT
* *
1619924 AATCTTGGAGATTTAATTTGT
1 AATCTT-GAGATATGATTTGT
1619945 A
1 A
1619946 GATATCCTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
17 16 0.20
18 29 0.36
19 7 0.09
21 6 0.07
22 14 0.17
23 9 0.11
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (20 bp):
AATCTTGAGATATGATTTGT
Found at i:1621342 original size:46 final size:44
Alignment explanation
Indices: 1621237--1621344 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
1621227 TGTCTTTGAC
** * * *
1621237 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
1621281 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
*
1621327 ATGGGCTTACATGGCTCA
1 ATGGACTTACATGGCTCA
1621345 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 33 0.60
46 22 0.40
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:1622598 original size:31 final size:31
Alignment explanation
Indices: 1622560--1622623 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
1622550 GTTACATTTC
1622560 TCCCCCTCTTTAGGGATTTTCGTCCCGAAAA
1 TCCCCCTCTTTAGGGATTTTCGTCCCGAAAA
1622591 TCCCCCTCTTTAGGGATTTTCGTCCCGAAAA
1 TCCCCCTCTTTAGGGATTTTCGTCCCGAAAA
1622622 TC
1 TC
1622624 TTACCTGTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.19, C:0.33, G:0.16, T:0.33
Consensus pattern (31 bp):
TCCCCCTCTTTAGGGATTTTCGTCCCGAAAA
Found at i:1624000 original size:44 final size:45
Alignment explanation
Indices: 1623952--1624040 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
1623942 CATGAATTAT
*
1623952 TCCTGTCTCCAATGCCATA-TATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATTATAATATGGACTTACATGGCTCAA
*
1623996 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TCCTGTCTCCAAAGCCATA-TTATAATATGGACTTACATGGCTCA
1624041 TTTCGTTCTG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 18 0.44
46 23 0.56
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (45 bp):
TCCTGTCTCCAAAGCCATATTATAATATGGACTTACATGGCTCAA
Found at i:1631402 original size:46 final size:44
Alignment explanation
Indices: 1631302--1631409 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
1631292 TGTCTTTGAC
** * * *
1631302 ATGGACTTACATGAATTATTCCTATCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
* *
1631346 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATA--TATAAT
*
1631392 ATGGGCTTACATGGCTCA
1 ATGGACTTACATGGCTCA
1631410 TTTCTGTTCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 32 0.59
46 22 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTATCTCCAAAGCCATATATAAT
Found at i:1638280 original size:11 final size:11
Alignment explanation
Indices: 1638266--1638335 Score: 65
Period size: 11 Copynumber: 6.5 Consensus size: 11
1638256 TCAAAAGCAA
1638266 AAAAAAAAGAG
1 AAAAAAAAGAG
1638277 AAAAAAAAGA-
1 AAAAAAAAGAG
1638287 AAAGAAAAAGA-
1 AAA-AAAAAGAG
* *
1638298 AAAAGAAAGAA
1 AAAAAAAAGAG
*
1638309 AAAAAAAAAAG
1 AAAAAAAAGAG
*
1638320 AGGAAAAAA-AG
1 A-AAAAAAAGAG
1638331 AAAAA
1 AAAAA
1638336 TGGAGAGGCC
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
10 12 0.24
11 32 0.64
12 6 0.12
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAG
Found at i:1638289 original size:16 final size:15
Alignment explanation
Indices: 1638264--1638335 Score: 85
Period size: 15 Copynumber: 4.7 Consensus size: 15
1638254 TTTCAAAAGC
1638264 AAAAAAAAAAGAGAA
1 AAAAAAAAAAGAGAA
1638279 AAAAAAGAAAAGA-AA
1 AAAAAA-AAAAGAGAA
*
1638294 AAGAAAAAGAA-AGAA
1 AA-AAAAAAAAGAGAA
1638309 AAAAAAAAAAGAGGAA
1 AAAAAAAAAAGA-GAA
1638325 AAAAAGAAAAA
1 AAAAA-AAAAA
1638336 TGGAGAGGCC
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
14 8 0.16
15 18 0.37
16 18 0.37
17 5 0.10
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAGAGAA
Found at i:1638289 original size:17 final size:16
Alignment explanation
Indices: 1638264--1638335 Score: 78
Period size: 16 Copynumber: 4.6 Consensus size: 16
1638254 TTTCAAAAGC
1638264 AAAAAAAAAAGAGAAA
1 AAAAAAAAAAGAGAAA
*
1638280 AAAAAGAAAAGA-AAA
1 AAAAAAAAAAGAGAAA
* *
1638295 AGAAAAAGAA-AG-AA
1 AAAAAAAAAAGAGAAA
1638309 AAAAAAAAAAGAGGAAA
1 AAAAAAAAAAGA-GAAA
*
1638326 AAAAGAAAAA
1 AAAAAAAAAA
1638336 TGGAGAGGCC
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
14 11 0.24
15 11 0.24
16 12 0.27
17 11 0.24
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGAGAAA
Found at i:1639415 original size:87 final size:86
Alignment explanation
Indices: 1639266--1639551 Score: 390
Period size: 87 Copynumber: 3.4 Consensus size: 86
1639256 CAAAATTCAG
* *
1639266 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGT----TCGCAGATCTTATCTCCCTAAGCAGTAG
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTAAAATTGCAGATCTTATCTCCCTAAGCAGTAG
1639327 CGGAGCAGATCGACGACGACT
66 CGGAGCAGATCGACGACGACT
* *
1639348 CGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGG-TAAAATTGCAGATCTTATCTCCCTAAGCAGTA
* *
1639413 GCGGAACAGATCAACGACGACT
65 GCGGAGCAGATCGACGACGACT
* * *
1639435 TGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCAAAATTGCGGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGT-AAAATTGCAGATCTTATCTCCCTAAGCAGTA
*
1639500 GTGGAGCAGATCGA--A-GA-T
65 GCGGAGCAGATCGACGACGACT
*
1639518 GCGCCTTAACCTCCTAAGCAGTAGGGTAACAGGT
1 -CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGT
1639552 TAAAGTATAG
Statistics
Matches: 180, Mismatches: 17, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
82 30 0.17
83 2 0.01
84 32 0.18
85 1 0.01
86 1 0.01
87 114 0.63
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.22
Consensus pattern (86 bp):
CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTAAAATTGCAGATCTTATCTCCCTAAGCAGTAG
CGGAGCAGATCGACGACGACT
Found at i:1639465 original size:44 final size:43
Alignment explanation
Indices: 1639267--1639470 Score: 128
Period size: 44 Copynumber: 4.8 Consensus size: 43
1639257 AAAATTCAGC
* *
1639267 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGT--TCG-CAGAT
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGATCAACGACAGAT
* *
1639307 --CTT-ATCTCCCTAAGCAGTAGCGG-AGCAGATCGACGAC-GACT
1 GCCTTAATC-CCCTAAGCAGTAG-GGTAACAGATCAACGACAGA-T
* * * * **
1639348 CGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTAAAATTACAGAT
1 -GCCTTAATCCCCTAAGCAGTAGGGTAACA-GAT-CAACGACAGAT
1639394 --CTT-ATCTCCCTAAGCAGTAGCGG-AACAGATCAACGAC-GACTT
1 GCCTTAATC-CCCTAAGCAGTAG-GGTAACAGATCAACGACAGA--T
*
1639436 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTCAA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGATCAA
1639471 AATTGCGGAT
Statistics
Matches: 124, Mismatches: 18, Indels: 40
0.68 0.10 0.22
Matches are distributed among these distances:
37 3 0.02
38 21 0.17
39 2 0.02
40 6 0.05
41 6 0.05
42 5 0.04
43 23 0.19
44 45 0.36
45 7 0.06
46 4 0.03
47 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.21
Consensus pattern (43 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGATCAACGACAGAT
Found at i:1640582 original size:35 final size:35
Alignment explanation
Indices: 1640524--1640641 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
1640514 AATCATATCT
1640524 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
1640561 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
1640596 TCTAAGATTGTATCTTATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
1640632 TCTAAGATTG
1 TCTAAGATTG
1640642 CATATCATTG
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 53 0.68
36 15 0.19
37 10 0.13
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:1640657 original size:17 final size:18
Alignment explanation
Indices: 1640524--1640646 Score: 94
Period size: 18 Copynumber: 6.8 Consensus size: 18
1640514 AATCATATCT
* *
1640524 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATAT-ACA
*
1640543 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
1640561 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
1640578 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
* * *
1640596 TCTAAGATTGTATCT-TA
1 TCTAAGATTGCATATACA
1640613 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATAT-ACA
1640632 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
1640647 CATTGAAGAT
Statistics
Matches: 92, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
17 31 0.34
18 33 0.36
19 28 0.30
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCATATACA
Found at i:1647861 original size:17 final size:17
Alignment explanation
Indices: 1647841--1647873 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
1647831 GATTAATGTT
1647841 TGGCACTGATTTTCTTA
1 TGGCACTGATTTTCTTA
1647858 TGGCACTGATTTTCTT
1 TGGCACTGATTTTCTT
1647874 GTGATGGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.18, G:0.18, T:0.48
Consensus pattern (17 bp):
TGGCACTGATTTTCTTA
Found at i:1652339 original size:22 final size:23
Alignment explanation
Indices: 1652314--1652381 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
1652304 TATTTTTCAC
1652314 TTAAAA-TTT-TTAGAATTTTTTT
1 TTAAAAGTTTATTA-AATTTTTTT
*
1652336 TTAAAAGTTTATTATATTTTTTT
1 TTAAAAGTTTATTAAATTTTTTT
** *
1652359 CGAAAATTTTATTAAATTTTTTT
1 TTAAAAGTTTATTAAATTTTTTT
1652382 AAAATATTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 6 0.15
23 30 0.77
24 3 0.08
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (23 bp):
TTAAAAGTTTATTAAATTTTTTT
Found at i:1652473 original size:20 final size:21
Alignment explanation
Indices: 1652450--1652488 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1652440 TTTAAAAAAA
*
1652450 TTTATTAAA-CTCTTAAAAGT
1 TTTACTAAACCTCTTAAAAGT
1652470 TTTACTAAACCTCTTAAAA
1 TTTACTAAACCTCTTAAAA
1652489 TTTAGCCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (21 bp):
TTTACTAAACCTCTTAAAAGT
Found at i:1653225 original size:18 final size:18
Alignment explanation
Indices: 1653202--1653253 Score: 65
Period size: 17 Copynumber: 2.9 Consensus size: 18
1653192 TATTTATCTA
1653202 TTATTTTTGTTT-TTATTT-
1 TTATTTTT-TTTCTT-TTTG
1653220 TTATTTTTTTTCTTTTTG
1 TTATTTTTTTTCTTTTTG
1653238 TTA-TTTTTTTCTTTTT
1 TTATTTTTTTTCTTTTT
1653254 TGGATGTTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 19 0.59
18 13 0.41
ACGTcount: A:0.08, C:0.04, G:0.04, T:0.85
Consensus pattern (18 bp):
TTATTTTTTTTCTTTTTG
Found at i:1653254 original size:18 final size:17
Alignment explanation
Indices: 1653202--1653255 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 17
1653192 TATTTATCTA
1653202 TTATTTTTGTTTTTATTT-
1 TTATTTTT-TTTTT-TTTG
1653220 TTATTTTTTTTCTTTTTG
1 TTATTTTTTTT-TTTTTG
1653238 TTATTTTTTTCTTTTTTG
1 TTATTTTTTT-TTTTTTG
1653256 GATGTTCTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.18
18 26 0.79
19 1 0.03
ACGTcount: A:0.07, C:0.04, G:0.06, T:0.83
Consensus pattern (17 bp):
TTATTTTTTTTTTTTTG
Found at i:1659396 original size:58 final size:60
Alignment explanation
Indices: 1659334--1659448 Score: 144
Period size: 58 Copynumber: 1.9 Consensus size: 60
1659324 GAATAGCTGA
* * * *
1659334 GTGACTATCTTGTAATTTTTCATAACTGAGTGACC-AAAAA-AAATTTACTAATAGTCAG
1 GTGACCATCTTGTAACTTCTCATAACTGAGTGACCAAAAAACAAATTCACTAATAGTCAG
* ** *
1659392 GTGACCATTTTGTAACTTCTCATAGTTGGGTGACCAAAAAACAAATTCACTAATAGT
1 GTGACCATCTTGTAACTTCTCATAACTGAGTGACCAAAAAACAAATTCACTAATAGT
1659449 TTATCCAGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
58 28 0.60
59 5 0.11
60 14 0.30
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.33
Consensus pattern (60 bp):
GTGACCATCTTGTAACTTCTCATAACTGAGTGACCAAAAAACAAATTCACTAATAGTCAG
Found at i:1665453 original size:9 final size:9
Alignment explanation
Indices: 1665439--1665467 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
1665429 TTATTAATTT
1665439 AAAATTTTA
1 AAAATTTTA
1665448 AAAATTTTA
1 AAAATTTTA
1665457 AAAATTTTA
1 AAAATTTTA
1665466 AA
1 AA
1665468 GGGTTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
AAAATTTTA
Found at i:1666978 original size:16 final size:17
Alignment explanation
Indices: 1666957--1666990 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1666947 GTTGCGATTG
*
1666957 AAAAATAC-TTTTAAAA
1 AAAAATACATTTGAAAA
1666973 AAAAATACATTTGAAAA
1 AAAAATACATTTGAAAA
1666990 A
1 A
1666991 TATTACAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAAATACATTTGAAAA
Found at i:1670962 original size:47 final size:48
Alignment explanation
Indices: 1670893--1670991 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 48
1670883 TTAACCACAC
* * *
1670893 ATTTGTTTTAGCAGCTTGACTGCGATTCTGGTGG-CTTGACCAAATAT
1 ATTTGTTCTAGCAGCTTGACTGCAACTCTGGTGGACTTGACCAAATAT
* * * *
1670940 ATTTGTTCTGGCAGCTTGACTGCAACTCTGGTGGATTTGTCCACATAT
1 ATTTGTTCTAGCAGCTTGACTGCAACTCTGGTGGACTTGACCAAATAT
1670988 ATTT
1 ATTT
1670992 ATTGGCGTGT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 30 0.68
48 14 0.32
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.39
Consensus pattern (48 bp):
ATTTGTTCTAGCAGCTTGACTGCAACTCTGGTGGACTTGACCAAATAT
Found at i:1675420 original size:206 final size:204
Alignment explanation
Indices: 1675066--1675475 Score: 568
Period size: 206 Copynumber: 2.0 Consensus size: 204
1675056 ATTTGATTGG
* * * * * *
1675066 ATATTTCTCGTTAAAAGTTATTTTGTGGACAAAAACACTCTTGGCTCATTAATTGGCTTCATCAT
1 ATATTTCCCGTTAAAAGTTATTGTGTAGACAAAAACACTCTTGGCTCATTAATTGACCTCATCAC
* * * ** *
1675131 ATTAGTGTCGCAACATTGATGGTAGTCTACTAGTCTTAGGCATGTCTTCAAGGTTGTGTTGTGAC
66 ATCAGTGTCGCAACATTGATAGCAGTCTACTAGTCTTAGGCATGTCTTCAAGGTTGTGCCGCGAC
* *
1675196 ACTGAAGGCATACTACTCCTTTTTTGAGTACTCTGTTCACTGTGTTGCGACATCGAAGCTCCATG
131 ACTAAAGGCAGACTACTCC--TTTTGAGTACTCTGTTCACTGTGTTGCGACATCGAAGCTCCATG
1675261 TTACAACATCA
194 TTACAACATCA
* ** * *
1675272 ATATTTCCCGTTAAAAGTTGTTGTGTAGATGAAAACACTCTTGGCTTATTAATTGACCTCATTAC
1 ATATTTCCCGTTAAAAGTTATTGTGTAGACAAAAACACTCTTGGCTCATTAATTGACCTCATCAC
* *
1675337 GTCAGTGTTGCAACATTGATAGCAGTCTACTAGTCTTAGGCATGTCTTCAAGGTTGTGCCGCGAC
66 ATCAGTGTCGCAACATTGATAGCAGTCTACTAGTCTTAGGCATGTCTTCAAGGTTGTGCCGCGAC
* * * *
1675402 ACTAAAGGCAGACTACTCCTTTTGAGTACTTTGTTCACTGTGTTGCGATATTGAAGCTCTATGTT
131 ACTAAAGGCAGACTACTCCTTTTGAGTACTCTGTTCACTGTGTTGCGACATCGAAGCTCCATGTT
*
1675467 GCAACATCA
196 ACAACATCA
1675476 CAGGTAGTCT
Statistics
Matches: 178, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
204 50 0.28
206 128 0.72
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (204 bp):
ATATTTCCCGTTAAAAGTTATTGTGTAGACAAAAACACTCTTGGCTCATTAATTGACCTCATCAC
ATCAGTGTCGCAACATTGATAGCAGTCTACTAGTCTTAGGCATGTCTTCAAGGTTGTGCCGCGAC
ACTAAAGGCAGACTACTCCTTTTGAGTACTCTGTTCACTGTGTTGCGACATCGAAGCTCCATGTT
ACAACATCA
Found at i:1676566 original size:5 final size:5
Alignment explanation
Indices: 1676556--1676604 Score: 89
Period size: 5 Copynumber: 9.8 Consensus size: 5
1676546 TTCTGATACG
*
1676556 TATGA TATGA TATGA TACGA TATGA TATGA TATGA TATGA TATGA TATG
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATGA TATG
1676605 TGGTGATGGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (5 bp):
TATGA
Found at i:1688340 original size:25 final size:24
Alignment explanation
Indices: 1688304--1688392 Score: 87
Period size: 24 Copynumber: 3.8 Consensus size: 24
1688294 TTCTAACGAG
*
1688304 AAGCTCA-TAAGAGCCATAATCAGA
1 AAGCTCACAAAGAGCCAT-ATCAGA
* *
1688328 AAGTTCACAAAGAACCATATC-GA
1 AAGCTCACAAAGAGCCATATCAGA
*
1688351 GAAGCTCACGAAA-AGCC-TATCAGG
1 -AAGCTCAC-AAAGAGCCATATCAGA
1688375 AAGCTCACAAAGAGCCAT
1 AAGCTCACAAAGAGCCAT
1688393 GTAACGGGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
22 3 0.06
23 18 0.34
24 21 0.40
25 11 0.21
ACGTcount: A:0.44, C:0.24, G:0.18, T:0.15
Consensus pattern (24 bp):
AAGCTCACAAAGAGCCATATCAGA
Found at i:1688384 original size:47 final size:48
Alignment explanation
Indices: 1688300--1688392 Score: 118
Period size: 47 Copynumber: 2.0 Consensus size: 48
1688290 AGCTTTCTAA
* * *
1688300 CGAGAAGCTCATAAGAGCCATAATCAGAAAGTTCACAAAGAACCATAT
1 CGAGAAGCTCAGAAAAGCCATAATCAGAAAGCTCACAAAGAACCATAT
* *
1688348 CGAGAAGCTCACGAAAAGCC-T-ATCAGGAAGCTCACAAAGAGCCAT
1 CGAGAAGCTCA-GAAAAGCCATAATCAGAAAGCTCACAAAGAACCAT
1688393 GTAACGGGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
47 21 0.54
48 12 0.31
49 6 0.15
ACGTcount: A:0.43, C:0.24, G:0.19, T:0.14
Consensus pattern (48 bp):
CGAGAAGCTCAGAAAAGCCATAATCAGAAAGCTCACAAAGAACCATAT
Found at i:1692067 original size:19 final size:20
Alignment explanation
Indices: 1692031--1692068 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
1692021 TAATTTGGTT
*
1692031 TTTTATTTTTGGGACTATAA
1 TTTTATTTTTAGGACTATAA
*
1692051 TTTT-TTTTTAGGTCTATA
1 TTTTATTTTTAGGACTATA
1692069 GCATGGTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.21, C:0.05, G:0.13, T:0.61
Consensus pattern (20 bp):
TTTTATTTTTAGGACTATAA
Found at i:1694142 original size:16 final size:16
Alignment explanation
Indices: 1694121--1694151 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1694111 TGTATTTTGT
1694121 ACTTGAATGTGCATGA
1 ACTTGAATGTGCATGA
*
1694137 ACTTGAATTTGCATG
1 ACTTGAATGTGCATG
1694152 CTTTGTGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (16 bp):
ACTTGAATGTGCATGA
Found at i:1695405 original size:12 final size:12
Alignment explanation
Indices: 1695388--1695412 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1695378 TGTGAAAAAT
1695388 AAAATAAAATAA
1 AAAATAAAATAA
1695400 AAAATAAAATAA
1 AAAATAAAATAA
1695412 A
1 A
1695413 GAACACACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:1705356 original size:27 final size:27
Alignment explanation
Indices: 1705313--1705416 Score: 127
Period size: 27 Copynumber: 3.9 Consensus size: 27
1705303 CAAGTTTAGA
* *
1705313 CCTGGTGAGCTGAGGTTCGCCAGTAGG
1 CCTGGTGAGCTGGGGTTCGCCAGTAAG
* * * *
1705340 CCTGGCGAGTTGGGGTTTGCTAGTAAG
1 CCTGGTGAGCTGGGGTTCGCCAGTAAG
* *
1705367 CCTGGTGAGCTGGGGTTCACTAGTAAG
1 CCTGGTGAGCTGGGGTTCGCCAGTAAG
*
1705394 CCTAGTGAGCTGGGGTTCGCCAG
1 CCTGGTGAGCTGGGGTTCGCCAG
1705417 AGGGTCTAAC
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.15, C:0.20, G:0.39, T:0.25
Consensus pattern (27 bp):
CCTGGTGAGCTGGGGTTCGCCAGTAAG
Found at i:1710589 original size:43 final size:43
Alignment explanation
Indices: 1710464--1710609 Score: 136
Period size: 43 Copynumber: 3.4 Consensus size: 43
1710454 TGTGTTATCG
* * *
1710464 TGTAAGACCACGTCTGGGA-TGTTTGCATCGAT-TTATGATTTACA
1 TGTAAGACCATGTCTGGGACAG-TGGCATCGATATT-TGATTT-CA
* * * * *
1710508 TGTAAGACCATGTCTGGGACATTGGTATC-TTATATGATTTCG
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTCA
* * *
1710550 TGTAAGACCCTGTGTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTCA
*
1710593 TGTAAGACCACGTCTGG
1 TGTAAGACCATGTCTGG
1710610 CATGTTGGCA
Statistics
Matches: 80, Mismatches: 19, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
42 26 0.32
43 30 0.38
44 24 0.30
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTCA
Found at i:1723364 original size:24 final size:24
Alignment explanation
Indices: 1723336--1723412 Score: 75
Period size: 24 Copynumber: 3.1 Consensus size: 24
1723326 CCTAAACACT
1723336 TAAAAATTAAAAAAACATAAACCC
1 TAAAAATTAAAAAAACATAAACCC
* **
1723360 TAAAAATTAAATAAAACCCTAAAGAC
1 TAAAAATTAAA-AAAA-CATAAACCC
* *
1723386 TAAAAAAT-AAAAAACATTAAATCC
1 TAAAAATTAAAAAAACA-TAAACCC
1723410 TAA
1 TAA
1723413 TTTCATAAAC
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
23 1 0.02
24 23 0.53
25 6 0.14
26 13 0.30
ACGTcount: A:0.65, C:0.14, G:0.01, T:0.19
Consensus pattern (24 bp):
TAAAAATTAAAAAAACATAAACCC
Found at i:1723382 original size:26 final size:25
Alignment explanation
Indices: 1723323--1723399 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 25
1723313 CCCTATCTCT
*
1723323 AACCCTAAACACTTAAAAATTAAAAA
1 AACCCTAAAC-CCTAAAAATTAAAAA
*
1723349 AA-CATAAACCCTAAAAATTAAATAA
1 AACCCTAAACCCTAAAAATTAAA-AA
** *
1723374 AACCCTAAAGACTAAAAAATAAAAA
1 AACCCTAAACCCTAAAAATTAAAAA
1723399 A
1 A
1723400 CATTAAATCC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 12 0.28
25 13 0.30
26 18 0.42
ACGTcount: A:0.65, C:0.17, G:0.01, T:0.17
Consensus pattern (25 bp):
AACCCTAAACCCTAAAAATTAAAAA
Found at i:1724724 original size:27 final size:27
Alignment explanation
Indices: 1724661--1724818 Score: 191
Period size: 27 Copynumber: 5.9 Consensus size: 27
1724651 GCGAGGCTGC
* *
1724661 CAGATAT-TGTGACA-AGTCACCAGATA
1 CAGATATATGTGGCAGAGCCACCAGA-A
1724687 CAGATAT-TGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAA
*
1724713 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATATATGTGGCAGAGCCACCAGAA
* *
1724740 CAGATA-ATTGTGGCATAGCCACCAGGA
1 CAGATATA-TGTGGCAGAGCCACCAGAA
*
1724767 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATATATGTGGCAGAGCCACCAGAA
*
1724794 CAGATA-ATTGTGGCATAGCCACCAG
1 CAGATATA-TGTGGCAGAGCCACCAG
1724819 GACGTTTCCT
Statistics
Matches: 117, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.20
27 93 0.79
28 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATATGTGGCAGAGCCACCAGAA
Found at i:1724782 original size:81 final size:79
Alignment explanation
Indices: 1724661--1724818 Score: 221
Period size: 81 Copynumber: 2.0 Consensus size: 79
1724651 GCGAGGCTGC
* *
1724661 CAGATATTGTGACAAGTCACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGAT-ATATGTG
1 CAGATATTGTGACAAGCCACCAGAGACAGATATTGTGGCAGAGCCACCAGAACAGATAAT-TGTG
1724725 GCAGAGCCACCAGAT
65 GCAGAGCCACCAGAT
* *
1724740 CAGATAATTGTGGCATAGCCACCAG-GACAGATATATGTGGCAGAGCCACCAGATCAGATAATTG
1 CAGAT-ATTGTGACA-AGCCACCAGAGACAGATAT-TGTGGCAGAGCCACCAGAACAGATAATTG
*
1724804 TGGCATAGCCACCAG
63 TGGCAGAGCCACCAG
1724819 GACGTTTCCT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
79 5 0.07
80 16 0.23
81 47 0.67
82 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (79 bp):
CAGATATTGTGACAAGCCACCAGAGACAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTGG
CAGAGCCACCAGAT
Found at i:1724819 original size:54 final size:54
Alignment explanation
Indices: 1724661--1724821 Score: 256
Period size: 54 Copynumber: 3.0 Consensus size: 54
1724651 GCGAGGCTGC
* * * *
1724661 CAGATAT-TGTGACA-AGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
1724713 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1724767 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1724821 C
1 C
1724822 GTTTCCTCCA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
52 7 0.07
53 11 0.11
54 84 0.82
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:1726438 original size:26 final size:26
Alignment explanation
Indices: 1726407--1726513 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
1726397 TGAAATGCCC
*
1726407 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
1726433 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
1726459 ATCAT-GAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
1726484 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
1726510 ATCA
1 ATCA
1726514 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 23 0.31
26 52 0.69
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:1726483 original size:51 final size:52
Alignment explanation
Indices: 1726407--1726513 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
1726397 TGAAATGCCC
1726407 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* *
1726459 ATCAT-GAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1726510 ATCA
1 ATCA
1726514 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 48 0.91
52 5 0.09
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:1731644 original size:27 final size:27
Alignment explanation
Indices: 1731596--1731700 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
1731586 GCGAGGCTGC
* *
1731596 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
1731623 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
1731649 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
1731676 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
1731701 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 8 0.11
27 60 0.85
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:1733329 original size:26 final size:26
Alignment explanation
Indices: 1733298--1733405 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
1733288 TGAAATGCCC
* *
1733298 ATCATGGAACATTTACTTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
1733324 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
1733350 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
1733376 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
1733402 ATCA
1 ATCA
1733406 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:1740365 original size:15 final size:16
Alignment explanation
Indices: 1740337--1740366 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1740327 ATACAAAAAT
1740337 AAATAAATACAATGAC
1 AAATAAATACAATGAC
1740353 AAATAAA-ACAATGA
1 AAATAAATACAATGA
1740367 GATCATCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.67, C:0.10, G:0.07, T:0.17
Consensus pattern (16 bp):
AAATAAATACAATGAC
Found at i:1742175 original size:23 final size:22
Alignment explanation
Indices: 1742130--1742186 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
1742120 AAATAAAACT
1742130 AGAAAATGATACTTTTTTCAAA
1 AGAAAATGATACTTTTTTCAAA
1742152 AGAAAATGATACTTTTTTCAAA
1 AGAAAATGATACTTTTTTCAAA
1742174 A-AAAAT-ATA-TTTT
1 AGAAAATGATACTTTT
1742187 GGATTTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
19 4 0.11
20 3 0.09
21 5 0.14
22 23 0.66
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.39
Consensus pattern (22 bp):
AGAAAATGATACTTTTTTCAAA
Found at i:1746415 original size:30 final size:31
Alignment explanation
Indices: 1746381--1746448 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
1746371 ACTAGAAGCG
* *
1746381 TTTTTTCAAAAAATGGCCCATTCCCAT-ATT
1 TTTTTTCAAAAAATGGCCCATTCACATAAAT
* * *
1746411 TTTTTTCTAAAATTGGCCTATTCACATAAAT
1 TTTTTTCAAAAAATGGCCCATTCACATAAAT
1746442 TTTTTTC
1 TTTTTTC
1746449 CAACATTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 23 0.72
31 9 0.28
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (31 bp):
TTTTTTCAAAAAATGGCCCATTCACATAAAT
Found at i:1750210 original size:57 final size:61
Alignment explanation
Indices: 1750121--1750260 Score: 189
Period size: 57 Copynumber: 2.4 Consensus size: 61
1750111 TAGACGTGCT
* * * *
1750121 ACATAACAATTGATTTAAACATATAAACAATCGATT-AAAA-AA-AA-AAGCAACATTCCA
1 ACATAACAATCGATTTAAACATAAAAAAAATCGATTCAAAAGAAGAAGAAACAACATTCCA
*
1750178 ACATAACAATCGATTTAAACATAAAAAAAATCGATTCAAAAGAAGAAGAAACAATATTCCA
1 ACATAACAATCGATTTAAACATAAAAAAAATCGATTCAAAAGAAGAAGAAACAACATTCCA
* *
1750239 CCATAAGAATCGATTTAAACAT
1 ACATAACAATCGATTTAAACAT
1750261 GTTAATAGTC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
57 33 0.46
58 4 0.06
59 2 0.03
60 2 0.03
61 31 0.43
ACGTcount: A:0.55, C:0.16, G:0.07, T:0.22
Consensus pattern (61 bp):
ACATAACAATCGATTTAAACATAAAAAAAATCGATTCAAAAGAAGAAGAAACAACATTCCA
Found at i:1750611 original size:17 final size:17
Alignment explanation
Indices: 1750589--1750622 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1750579 ACAGAAGATG
1750589 AATTAATCTATTAACAA
1 AATTAATCTATTAACAA
1750606 AATTAATCTATTAACAA
1 AATTAATCTATTAACAA
1750623 GAAAATATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
AATTAATCTATTAACAA
Found at i:1765378 original size:35 final size:35
Alignment explanation
Indices: 1765336--1765407 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
1765326 ATCTTAAATT
1765336 ATGAATATGTATGTATTGTGTTATGTGTTTATATG
1 ATGAATATGTATGTATTGTGTTATGTGTTTATATG
1765371 ATGAATATGTATGTATTGTGTTATGTGTTTATATG
1 ATGAATATGTATGTATTGTGTTATGTGTTTATATG
1765406 AT
1 AT
1765408 ATGTGACCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.51
Consensus pattern (35 bp):
ATGAATATGTATGTATTGTGTTATGTGTTTATATG
Found at i:1765519 original size:38 final size:39
Alignment explanation
Indices: 1765449--1765524 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 39
1765439 TGTTTTTTAT
*
1765449 TATTGTGATATATGCTTAAATGTTATGGGATTATATGTA
1 TATTGTGATATATCCTTAAATGTTATGGGATTATATGTA
**
1765488 TATTGTGATATA-CCTTGGATGTTA-GGAGATTATATGT
1 TATTGTGATATATCCTTAAATGTTATGG-GATTATATGT
1765525 GTAATAAGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 2 0.06
38 19 0.58
39 12 0.36
ACGTcount: A:0.29, C:0.04, G:0.22, T:0.45
Consensus pattern (39 bp):
TATTGTGATATATCCTTAAATGTTATGGGATTATATGTA
Found at i:1766021 original size:18 final size:18
Alignment explanation
Indices: 1766000--1766061 Score: 79
Period size: 18 Copynumber: 3.2 Consensus size: 18
1765990 ATTTATCTAC
1766000 AATATAAACATTAAATTT
1 AATATAAACATTAAATTT
1766018 AATATAAACATTAAATTTAATTT
1 AATATAAACATT--A---AATTT
1766041 AATATAAACATTAAATTT
1 AATATAAACATTAAATTT
1766059 AAT
1 AAT
1766062 TTAATATTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
18 20 0.51
20 1 0.03
21 1 0.03
23 17 0.44
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
AATATAAACATTAAATTT
Found at i:1766042 original size:23 final size:23
Alignment explanation
Indices: 1766013--1766068 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
1766003 ATAAACATTA
1766013 AATTTAATATAAACATTAAATTT
1 AATTTAATATAAACATTAAATTT
1766036 AATTTAATATAAACATTAAATTT
1 AATTTAATATAAACATTAAATTT
1766059 AATTTAATAT
1 AATTTAATAT
1766069 TAAGATAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
AATTTAATATAAACATTAAATTT
Found at i:1767028 original size:14 final size:14
Alignment explanation
Indices: 1767009--1767037 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1766999 CTATTCTGTC
1767009 TTCTTAATGATTAA
1 TTCTTAATGATTAA
1767023 TTCTTAATGATTAA
1 TTCTTAATGATTAA
1767037 T
1 T
1767038 ATGATCACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TTCTTAATGATTAA
Found at i:1769517 original size:22 final size:22
Alignment explanation
Indices: 1769489--1769534 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
1769479 CAATTTAGAT
1769489 CCCTAATTTGAGGATTGGTGAA
1 CCCTAATTTGAGGATTGGTGAA
*
1769511 CCCTAATTTGAGGATTGTTGAA
1 CCCTAATTTGAGGATTGGTGAA
1769533 CC
1 CC
1769535 ATATCGAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (22 bp):
CCCTAATTTGAGGATTGGTGAA
Found at i:1774424 original size:19 final size:20
Alignment explanation
Indices: 1774388--1774426 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
1774378 ATTATTATTC
*
1774388 AATAACTTCTCTTTTGAGTT
1 AATAAATTCTCTTTTGAGTT
1774408 AATAAATTCTC-TTTGAGTT
1 AATAAATTCTCTTTTGAGTT
1774427 TTTCTTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.28, C:0.13, G:0.10, T:0.49
Consensus pattern (20 bp):
AATAAATTCTCTTTTGAGTT
Found at i:1774684 original size:17 final size:19
Alignment explanation
Indices: 1774646--1774688 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
1774636 TATTTTCTTT
1774646 TTTATTGTTCTAATACTTGA
1 TTTATTGTTCTAATA-TTGA
1774666 TTTATTGTTCT-AT-TTGA
1 TTTATTGTTCTAATATTGA
1774683 TTTATT
1 TTTATT
1774689 TATTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.43
19 2 0.09
20 11 0.48
ACGTcount: A:0.21, C:0.07, G:0.09, T:0.63
Consensus pattern (19 bp):
TTTATTGTTCTAATATTGA
Found at i:1791193 original size:17 final size:19
Alignment explanation
Indices: 1791160--1791194 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
1791150 ATTATTTGGA
1791160 TATTGTATAACTTTTGTTT
1 TATTGTATAACTTTTGTTT
1791179 TATTGT-TAA-TTTTGTT
1 TATTGTATAACTTTTGTT
1791195 ACTATTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.20, C:0.03, G:0.11, T:0.66
Consensus pattern (19 bp):
TATTGTATAACTTTTGTTT
Found at i:1794094 original size:23 final size:23
Alignment explanation
Indices: 1794068--1794114 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
1794058 AATTTTACAA
1794068 TCCAACCACAAATACTACATAGT
1 TCCAACCACAAATACTACATAGT
1794091 TCCAACCACAAATACTACATAGT
1 TCCAACCACAAATACTACATAGT
1794114 T
1 T
1794115 ATACATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.30, G:0.04, T:0.23
Consensus pattern (23 bp):
TCCAACCACAAATACTACATAGT
Found at i:1798215 original size:13 final size:13
Alignment explanation
Indices: 1798199--1798223 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1798189 GTTAATCCTT
1798199 TATATGATGGTTG
1 TATATGATGGTTG
1798212 TATATGATGGTT
1 TATATGATGGTT
1798224 ATATTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (13 bp):
TATATGATGGTTG
Found at i:1807100 original size:52 final size:50
Alignment explanation
Indices: 1807038--1807139 Score: 159
Period size: 52 Copynumber: 2.0 Consensus size: 50
1807028 CAAGTACCAA
* *
1807038 GCAGATAAAACTAATAACATAGAAATATAGTTTAAAAAAAAACAAAAGCTAC
1 GCAGATAAAACTAATAACATAAAAATATAATTT--AAAAAAACAAAAGCTAC
*
1807090 GCAGATAAAACTAATAACATAAAAATATAATTTTAAAAAACAAAAGCTAC
1 GCAGATAAAACTAATAACATAAAAATATAATTTAAAAAAACAAAAGCTAC
1807140 TAACCAATTA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 16 0.34
52 31 0.66
ACGTcount: A:0.60, C:0.12, G:0.08, T:0.21
Consensus pattern (50 bp):
GCAGATAAAACTAATAACATAAAAATATAATTTAAAAAAACAAAAGCTAC
Found at i:1811940 original size:25 final size:24
Alignment explanation
Indices: 1811896--1811944 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
1811886 TTTTAAAACA
1811896 TTTTTAACTTTGATTGAAAAAGTC
1 TTTTTAACTTTGATTGAAAAAGTC
1811920 TTTTTAACTTTGATTGAAAAAGTC
1 TTTTTAACTTTGATTGAAAAAGTC
1811944 T
1 T
1811945 AACTTGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (24 bp):
TTTTTAACTTTGATTGAAAAAGTC
Found at i:1811967 original size:20 final size:19
Alignment explanation
Indices: 1811897--1811973 Score: 73
Period size: 24 Copynumber: 3.7 Consensus size: 19
1811887 TTTAAAACAT
1811897 TTTTAACTTTGATTGAAAAA
1 TTTTAAC-TTGATTGAAAAA
1811917 GTCTTTTTAACTTTGATTGAAAAA
1 ----TTTTAAC-TTGATTGAAAAA
* *
1811941 GTCTAACTTGATTGAAATAA
1 TTTTAACTTGATTGAAA-AA
1811961 TTTTAACTTGATT
1 TTTTAACTTGATT
1811974 AAAGGTTGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.21
20 18 0.38
24 20 0.42
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (19 bp):
TTTTAACTTGATTGAAAAA
Found at i:1817522 original size:27 final size:27
Alignment explanation
Indices: 1817489--1817542 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
1817479 TTATTTGACA
1817489 TGCTCAATATGTCCTCAATACTCACAT
1 TGCTCAATATGTCCTCAATACTCACAT
1817516 TGCTCAATATGTCCTCAATACTCACAT
1 TGCTCAATATGTCCTCAATACTCACAT
1817543 ACTTTCAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (27 bp):
TGCTCAATATGTCCTCAATACTCACAT
Found at i:1818572 original size:27 final size:27
Alignment explanation
Indices: 1818542--1818682 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
1818532 GTAACGAAGT
* *
1818542 CACCATATACAGATATTGTAGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
1818569 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
1818596 CACCAGAT-CAGATAATCGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
1818623 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
1818650 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
1818677 CACCAG
1 CACCAG
1818683 GACGCTTTCT
Statistics
Matches: 100, Mismatches: 7, Indels: 14
0.83 0.06 0.12
Matches are distributed among these distances:
26 10 0.10
27 86 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:1818627 original size:54 final size:54
Alignment explanation
Indices: 1818566--1818682 Score: 225
Period size: 54 Copynumber: 2.2 Consensus size: 54
1818556 ATTGTAGCAG
1818566 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAT
1 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAT
*
1818620 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCAT
1 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAT
1818674 AGCCACCAG
1 AGCCACCAG
1818683 GACGCTTTCT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.16
Consensus pattern (54 bp):
AGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAT
Found at i:1820319 original size:26 final size:26
Alignment explanation
Indices: 1820289--1820396 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
1820279 TGAAATTCCC
1820289 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
1820315 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
1820341 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
**
1820367 ATCATGGAGTATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
1820393 ATCA
1 ATCA
1820397 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:1822013 original size:5 final size:6
Alignment explanation
Indices: 1821998--1822029 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
1821988 ATCTTGTGGC
1821998 AAAAAG AAAAAG AAAAAG AAAAAG -AAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
1822030 GAGATGGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:1823806 original size:18 final size:17
Alignment explanation
Indices: 1823783--1823818 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
1823773 CTTGGCCCAT
1823783 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAA-CAG
1823801 TGCAGTAACAGTAACAG
1 TGCAGTAACAGTAACAG
1823818 T
1 T
1823819 ACATATATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (17 bp):
TGCAGTAACAGTAACAG
Found at i:1824441 original size:400 final size:395
Alignment explanation
Indices: 1823701--1824491 Score: 1203
Period size: 400 Copynumber: 2.0 Consensus size: 395
1823691 GCCTAAGCCC
*
1823701 TTTTTAGTAACAGTGACAATATCAGTTTGGGCTTTAGCCCATTTCAATACAGAAACAGTCATGTG
1 TTTTTAGTAACAGTGACAATATCAGTTTGGGCTTTAGCCCATCTCAATACAGAAACAGTCATGTG
1823766 TTTGGGCCTTGGCCCATTGCAGTAACAGTAATCAGTGCAGTAACAGTAACAGTACATATATGCAA
66 TTTGGGCCTTGGCCCATTGCAGTAACAGTAATCAGTGCAGTAACAGTAACAGTACATATATGCAA
* *
1823831 TAAGAAATCCTACCCAACCAGCCTCTATACACCACTCCGTCCAGCCTTACACACCATGTAGGGAT
131 TAAGAAATCCTACCCAACCAGCCTCTACACACCACTCCGTCCAGCCCTACACACCATGTAGGGAT
*
1823896 AAAATCAACCCACCAATCCCTACACACCAAAAATAGCACCGATTACGGCACTAAACAGTATTTGC
196 AAAATCAACCCACCAATCCCTACACACCAAAAATAGCACAGATTACGGCACTAAACAGTATTTGC
* *
1823961 AGTAAAACTGCCAGTATAATAGGCTTAAAGCCAACAGTGATTTGCAGCAGAGCTGTCAATACAGT
261 AGTAAAACTGCCAATATAATAGGCTTAAAGCCAACAGTGATTTGCAGCAGAGCTGCCAATACAGT
* * *
1824026 ACATTTCCTCCAATCATAACAAACCCATCCCCATGCAATGCATCATAGAGTCATATCATGTCATA
326 ACACTTCCTCCAATCATAACAAA--C-T--CAATGCAATGCATCATACAGTCATATCATGTCATA
*
1824091 TTATAGCCTT
386 TCATAGCCTT
*
1824101 TTTTTAGTAACAGTGACAATATCAGTTTGGGCTTTAGCCCATCTCAATACAGAAATAGTCATGTG
1 TTTTTAGTAACAGTGACAATATCAGTTTGGGCTTTAGCCCATCTCAATACAGAAACAGTCATGTG
* *
1824166 TTTGGGCCTTGGCCCATTGCTGTAACAGTAATCAGTGCAGTAACAGTAACA-TA-ATAGATATGT
66 TTTGGGCCTTGGCCCATTGCAGTAACAGTAATCAGTGCAGTAACAGTAACAGTACAT--ATATGC
* *
1824229 AATCAGAAATCCTACCCAACCAGCCTCTACACACCACTCCGTCCAGCCCTACACACCATGTGGGG
129 AATAAGAAATCCTACCCAACCAGCCTCTACACACCACTCCGTCCAGCCCTACACACCATGTAGGG
* ** * *
1824294 ATAAAATCAACCCACCCATCTTTACACACCAAAAATAGCATCAG-TTGCGGTACTAAACAGTATT
194 ATAAAATCAACCCACCAATCCCTACACACCAAAAATAGCA-CAGATTACGGCACTAAACAGTATT
* * ** * * *
1824358 TGCAGTAGAGA-TGCCAATATAATAGGCTTAGAGCCATTAGTGATTTGTAGTAGAGCTGCCAGTA
258 TGCAGTA-AAACTGCCAATATAATAGGCTTAAAGCCAACAGTGATTTGCAGCAGAGCTGCCAATA
* * *
1824422 CAGTACACTTCCTCCAATCATAATAAACTCAATGCAATGTATCATACAGTCATGTCATGTCATAT
322 CAGTACACTTCCTCCAATCATAACAAACTCAATGCAATGCATCATACAGTCATATCATGTCATAT
1824487 CATAG
387 CATAG
1824492 AAATCATACA
Statistics
Matches: 357, Mismatches: 30, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
395 36 0.10
397 1 0.00
398 3 0.01
399 2 0.01
400 311 0.87
401 4 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (395 bp):
TTTTTAGTAACAGTGACAATATCAGTTTGGGCTTTAGCCCATCTCAATACAGAAACAGTCATGTG
TTTGGGCCTTGGCCCATTGCAGTAACAGTAATCAGTGCAGTAACAGTAACAGTACATATATGCAA
TAAGAAATCCTACCCAACCAGCCTCTACACACCACTCCGTCCAGCCCTACACACCATGTAGGGAT
AAAATCAACCCACCAATCCCTACACACCAAAAATAGCACAGATTACGGCACTAAACAGTATTTGC
AGTAAAACTGCCAATATAATAGGCTTAAAGCCAACAGTGATTTGCAGCAGAGCTGCCAATACAGT
ACACTTCCTCCAATCATAACAAACTCAATGCAATGCATCATACAGTCATATCATGTCATATCATA
GCCTT
Found at i:1824613 original size:27 final size:27
Alignment explanation
Indices: 1824583--1824645 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
1824573 AGGGGCAAAT
1824583 CAGTCATTTTACCACATAAGGGAAAAA
1 CAGTCATTTTACCACATAAGGGAAAAA
* * *
1824610 CAGTTATTTTACCACATAGGGGCAAAA
1 CAGTCATTTTACCACATAAGGGAAAAA
1824637 CAGTCATTT
1 CAGTCATTT
1824646 GTCAATTTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (27 bp):
CAGTCATTTTACCACATAAGGGAAAAA
Found at i:1829558 original size:34 final size:34
Alignment explanation
Indices: 1829515--1829579 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
1829505 AACGCTCACG
*
1829515 ATGTACCAAACTTGGTGAATATGTTTTTTTTTTC
1 ATGTACCAAACTTGGCGAATATGTTTTTTTTTTC
1829549 ATGTACCAAACTTGGCGAATATGTTTTTTTT
1 ATGTACCAAACTTGGCGAATATGTTTTTTTT
1829580 CTTGAGAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.48
Consensus pattern (34 bp):
ATGTACCAAACTTGGCGAATATGTTTTTTTTTTC
Found at i:1834712 original size:6 final size:6
Alignment explanation
Indices: 1834703--1834753 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
1834693 AATAAAATTG
1834703 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1834751 AAA
1 AAA
1834754 GATAATTCCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:1843937 original size:20 final size:20
Alignment explanation
Indices: 1843912--1843959 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
1843902 AGTTGAAGTG
1843912 AATGTGATATTGAGTTATGA
1 AATGTGATATTGAGTTATGA
*
1843932 AATGTGATATTGGGTTATGA
1 AATGTGATATTGAGTTATGA
*
1843952 AATATGAT
1 AATGTGAT
1843960 TTTATGGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (20 bp):
AATGTGATATTGAGTTATGA
Found at i:1844116 original size:76 final size:75
Alignment explanation
Indices: 1843986--1844248 Score: 350
Period size: 76 Copynumber: 3.5 Consensus size: 75
1843976 TGAGTAATTG
*
1843986 ATAT-TGTCGGTTCATCCAACTAGCTCTGGGCGCAACTTCTGTTAGTTTATCTGACTAGTGTTAG
1 ATATCTGTCGGTTCAT-CAACTAGCTCTGGGCGCAACTTCTGTTAGTTTATCTGACTAGTGTTGG
1844050 GCACACTTTCT
65 GCACACTTTCT
* * * * *
1844061 ATATCTGTCGGTTCATCAGACTGGCGCTGGCCGCAACTTCTATTAGTTTATCTGACTAGTGCTGG
1 ATATCTGTCGGTTCATCA-ACTAGCTCTGGGCGCAACTTCTGTTAGTTTATCTGACTAGTGTTGG
1844126 GCACACTTTCT
65 GCACACTTTCT
* * * *
1844137 ATATCTATCGGTTCATCTAACTAGCTTTGGGCACAACTTCTGTTAGTTTATTTGACTAGTGTTGG
1 ATATCTGTCGGTTCATC-AACTAGCTCTGGGCGCAACTTCTGTTAGTTTATCTGACTAGTGTTGG
1844202 GCACACTCTT-T
65 GCACACT-TTCT
* * *
1844213 ATATCTGTCAGTTCATCCGACTAGCACTGGGCGCAA
1 ATATCTGTCGGTTCAT-CAACTAGCTCTGGGCGCAA
1844249 AGTTTAGATA
Statistics
Matches: 162, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
75 6 0.04
76 152 0.94
77 4 0.02
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (75 bp):
ATATCTGTCGGTTCATCAACTAGCTCTGGGCGCAACTTCTGTTAGTTTATCTGACTAGTGTTGGG
CACACTTTCT
Found at i:1844137 original size:35 final size:35
Alignment explanation
Indices: 1844022--1844208 Score: 94
Period size: 35 Copynumber: 5.0 Consensus size: 35
1844012 TGGGCGCAAC
* *
1844022 TTCTGTTAGTTTATCTGACTAGTGTTAGGCACACT
1 TTCTATTAGTTTATCTGACTAGTGTTGGGCACACT
* * * * *
1844057 TTCTATATCTGTCGGTTCATCAGACTGGCGCTGGCCGCA-AC-
1 TTCTAT-T-AGT---TT-ATCTGACTAGTGTTGG--GCACACT
*
1844098 TTCTATTAGTTTATCTGACTAGTGCTGGGCACACT
1 TTCTATTAGTTTATCTGACTAGTGTTGGGCACACT
* *
1844133 TTCTATATCTATCGGTTCATCTAACTAGCT-TTGGGCACAAC-
1 TTC--TAT-TA---GTTTATCTGACTAG-TGTTGGGCAC-ACT
* *
1844174 TTCTGTTAGTTTATTTGACTAGTGTTGGGCACACT
1 TTCTATTAGTTTATCTGACTAGTGTTGGGCACACT
1844209 CTTTATATCT
Statistics
Matches: 114, Mismatches: 18, Indels: 40
0.66 0.10 0.23
Matches are distributed among these distances:
33 3 0.03
34 5 0.04
35 40 0.35
36 3 0.03
37 5 0.04
38 4 0.04
39 4 0.04
40 3 0.03
41 39 0.34
42 5 0.04
43 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (35 bp):
TTCTATTAGTTTATCTGACTAGTGTTGGGCACACT
Found at i:1850632 original size:13 final size:13
Alignment explanation
Indices: 1850614--1850641 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1850604 ATAAAATTAG
1850614 AAAGATGATAAAT
1 AAAGATGATAAAT
1850627 AAAGATGATAAAT
1 AAAGATGATAAAT
1850640 AA
1 AA
1850642 TAAAATAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAGATGATAAAT
Found at i:1851301 original size:26 final size:26
Alignment explanation
Indices: 1851265--1851316 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1851255 GGTAAAGAAA
1851265 AAGTAATGGATTAGTAGTATACGAGT
1 AAGTAATGGATTAGTAGTATACGAGT
1851291 AAGTAATGGATTAGTAGTATACGAGT
1 AAGTAATGGATTAGTAGTATACGAGT
1851317 TCACGAACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (26 bp):
AAGTAATGGATTAGTAGTATACGAGT
Found at i:1851888 original size:25 final size:25
Alignment explanation
Indices: 1851852--1851938 Score: 77
Period size: 25 Copynumber: 3.5 Consensus size: 25
1851842 GGCTTCTACG
* *
1851852 AGCTTCCTGTTATACAGCTCGGAAA
1 AGCTTCCCGTTATACAGCTCGGATA
** ** *
1851877 AGCTTCCCGTTACT-TGGCTCATATG
1 AGCTTCCCGTTA-TACAGCTCGGATA
* *
1851902 AGCTTCCCATTATACAGTTCGGATA
1 AGCTTCCCGTTATACAGCTCGGATA
1851927 AGCTTCCCGTTA
1 AGCTTCCCGTTA
1851939 CATGGCTCAT
Statistics
Matches: 45, Mismatches: 15, Indels: 4
0.70 0.23 0.06
Matches are distributed among these distances:
24 1 0.02
25 43 0.96
26 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (25 bp):
AGCTTCCCGTTATACAGCTCGGATA
Found at i:1851907 original size:50 final size:50
Alignment explanation
Indices: 1851851--1851989 Score: 188
Period size: 50 Copynumber: 2.7 Consensus size: 50
1851841 TGGCTTCTAC
** *
1851851 GAGCTTCCTGTTATACAGCTCGGAAAAGCTTCCCGTTACTTGGCTCATAT
1 GAGCTTCCCATTATACAGCTCGGAAAAGCTTCCCGTTACATGGCTCATAT
* *
1851901 GAGCTTCCCATTATACAGTTCGGATAAGCTTCCCGTTACATGGCTCATAT
1 GAGCTTCCCATTATACAGCTCGGAAAAGCTTCCCGTTACATGGCTCATAT
** *
1851951 GAGCTTCCCATTATATGGCTCGAGAGAAGGCTTCCCGTT
1 GAGCTTCCCATTATACAGCTCG-GA-AAAGCTTCCCGTT
1851990 TATGTGTTCG
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
50 64 0.83
51 2 0.03
52 11 0.14
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (50 bp):
GAGCTTCCCATTATACAGCTCGGAAAAGCTTCCCGTTACATGGCTCATAT
Found at i:1851955 original size:25 final size:25
Alignment explanation
Indices: 1851877--1851971 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 25
1851867 AGCTCGGAAA
* *
1851877 AGCTTCCCGTTACTTGGCTCATATG
1 AGCTTCCCATTACATGGCTCATATG
* ** * ** *
1851902 AGCTTCCCATTATACAGTTCGGATA
1 AGCTTCCCATTACATGGCTCATATG
*
1851927 AGCTTCCCGTTACATGGCTCATATG
1 AGCTTCCCATTACATGGCTCATATG
*
1851952 AGCTTCCCATTATATGGCTC
1 AGCTTCCCATTACATGGCTC
1851972 GAGAGAAGGC
Statistics
Matches: 51, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (25 bp):
AGCTTCCCATTACATGGCTCATATG
Found at i:1853181 original size:30 final size:30
Alignment explanation
Indices: 1853121--1853186 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
1853111 GTATGGACAT
*
1853121 GGCCAGGTGCCCAAATATGAATGCCCACAC
1 GGCCAGGTGCCCAAATATGAATGCACACAC
* * *
1853151 GGCCATGTGCCCAAATTTGAATGCATACAC
1 GGCCAGGTGCCCAAATATGAATGCACACAC
*
1853181 GACCAG
1 GGCCAG
1853187 AGACATGGGC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.17
Consensus pattern (30 bp):
GGCCAGGTGCCCAAATATGAATGCACACAC
Found at i:1859069 original size:20 final size:18
Alignment explanation
Indices: 1859019--1859070 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 18
1859009 ATACAAGATA
1859019 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
**
1859036 AATATTAAGGTAATCACTTT
1 AATATTAAATTAAT-A-TTT
1859056 AATATTAAATTAATA
1 AATATTAAATTAATA
1859071 AAATACGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 11 0.39
19 2 0.07
20 15 0.54
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:1860706 original size:16 final size:15
Alignment explanation
Indices: 1860685--1860718 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
1860675 CTATGCATGC
*
1860685 AAAATATAAAAGACGA
1 AAAATACAAAAGAC-A
1860701 AAAATACAAAAGACA
1 AAAATACAAAAGACA
1860716 AAA
1 AAA
1860719 TAGTGAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.74, C:0.09, G:0.09, T:0.09
Consensus pattern (15 bp):
AAAATACAAAAGACA
Found at i:1865086 original size:3 final size:3
Alignment explanation
Indices: 1865068--1865180 Score: 199
Period size: 3 Copynumber: 37.3 Consensus size: 3
1865058 GATGATGATG
* *
1865068 ATA ATG ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
1865114 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1865162 ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
1865181 ACTAAATAAA
Statistics
Matches: 105, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
3 102 0.97
4 3 0.03
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:1867390 original size:46 final size:47
Alignment explanation
Indices: 1867330--1867595 Score: 319
Period size: 46 Copynumber: 6.0 Consensus size: 47
1867320 TTTGACATGA
* * * * *
1867330 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
* * *
1867376 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
* *
1867422 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
1867468 TGCCATGGTATCTTTCAACCATGGTCTTA--CATATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCAT-TTTCATATCAGGT
1867514 TGCCATGGTATCTTTCAACCATGGTC-T--T-A----CATA-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
*
1867552 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAG
1867596 AGAGCACACT
Statistics
Matches: 195, Mismatches: 12, Indels: 26
0.84 0.05 0.11
Matches are distributed among these distances:
38 31 0.16
39 5 0.03
42 1 0.01
44 3 0.02
45 10 0.05
46 145 0.74
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
Found at i:1867560 original size:38 final size:39
Alignment explanation
Indices: 1867504--1867582 Score: 151
Period size: 38 Copynumber: 2.1 Consensus size: 39
1867494 TTACATATTT
1867504 CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1867543 CATA-CAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1867581 CA
1 CA
1867583 CATTTCATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 36 0.90
39 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (39 bp):
CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
Found at i:1870079 original size:30 final size:30
Alignment explanation
Indices: 1870012--1870079 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
1870002 CACCCTTAAA
* * *
1870012 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
1870042 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
1870071 AGTATTTAC
1 A-TATTTAC
1870080 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:1882455 original size:13 final size:13
Alignment explanation
Indices: 1882417--1882457 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
1882407 ACAACACCAA
1882417 GGACAACAAGTTAG
1 GGACAACAAGTT-G
*
1882431 GG-CAAC-ACTTG
1 GGACAACAAGTTG
1882442 GGACAACAAGTTG
1 GGACAACAAGTTG
1882455 GGA
1 GGA
1882458 TAGTCAAAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
11 3 0.13
12 7 0.30
13 11 0.48
14 2 0.09
ACGTcount: A:0.37, C:0.17, G:0.32, T:0.15
Consensus pattern (13 bp):
GGACAACAAGTTG
Found at i:1886197 original size:30 final size:30
Alignment explanation
Indices: 1886163--1886225 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
1886153 ACTTATTTTA
1886163 TTGTTAATTTTGTTATTATTTTA-AAGACAT
1 TTGTTAATTTTGTTATTATTTTAGAAG-CAT
1886193 TTGTTAATTTTGTTATTATTTTAGAAGCAT
1 TTGTTAATTTTGTTATTATTTTAGAAGCAT
1886223 TTG
1 TTG
1886226 CCTGTTAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 29 0.91
31 3 0.09
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAAGCAT
Found at i:1892395 original size:21 final size:21
Alignment explanation
Indices: 1892371--1892422 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
1892361 GATATTTGGC
1892371 TTTGCGTTTAGGAGCTTTTCT
1 TTTGCGTTTAGGAGCTTTTCT
* * *
1892392 TTTG-GCTTAAGGTGGTTTTCT
1 TTTGCG-TTTAGGAGCTTTTCT
1892413 TTTGCTGTTT
1 TTTGC-GTTT
1892423 GGTTTTGGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
20 1 0.04
21 20 0.83
22 2 0.08
23 1 0.04
ACGTcount: A:0.08, C:0.12, G:0.25, T:0.56
Consensus pattern (21 bp):
TTTGCGTTTAGGAGCTTTTCT
Found at i:1894803 original size:31 final size:31
Alignment explanation
Indices: 1894768--1894836 Score: 104
Period size: 31 Copynumber: 2.2 Consensus size: 31
1894758 TAAACAGACA
* *
1894768 ACTTTTGGAGTTAGAAGTGCTTTT-GAAAAGC
1 ACTTTTGGAGTCAGAAGTG-TTTTCCAAAAGC
1894799 ACTTTTGGAGTCAGAAGTGTTTTCCAAAAGC
1 ACTTTTGGAGTCAGAAGTGTTTTCCAAAAGC
1894830 ACTTTTG
1 ACTTTTG
1894837 AACCCAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 4 0.11
31 31 0.89
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (31 bp):
ACTTTTGGAGTCAGAAGTGTTTTCCAAAAGC
Found at i:1906421 original size:20 final size:20
Alignment explanation
Indices: 1906396--1906435 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
1906386 CCATTACACC
* *
1906396 ATTCAAAATTTGGTATCACT
1 ATTCAAAATATGATATCACT
*
1906416 ATTCAATATATGATATCACT
1 ATTCAAAATATGATATCACT
1906436 TCTGTATTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (20 bp):
ATTCAAAATATGATATCACT
Found at i:1907294 original size:31 final size:30
Alignment explanation
Indices: 1907221--1907295 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 30
1907211 TTTAACAAAC
* *
1907221 TAATACTTTATATAAAAAATTTTAAATAATT
1 TAATA-TTTAAATAAAAAATTTCAAATAATT
*
1907252 TAATAACTTAAATAAAAACATTTCAAATAATT
1 TAAT-ATTTAAATAAAAA-ATTTCAAATAATT
1907284 TAATATTTAAAT
1 TAATATTTAAAT
1907296 TATTAATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 21 0.55
32 17 0.45
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.41
Consensus pattern (30 bp):
TAATATTTAAATAAAAAATTTCAAATAATT
Found at i:1911531 original size:51 final size:51
Alignment explanation
Indices: 1911470--1911567 Score: 196
Period size: 51 Copynumber: 1.9 Consensus size: 51
1911460 TGTTTACCCC
1911470 AAATGCATTCTTTTATAATTAGTGTCTGAAGTATTTTAAAAAAAAAAATAG
1 AAATGCATTCTTTTATAATTAGTGTCTGAAGTATTTTAAAAAAAAAAATAG
1911521 AAATGCATTCTTTTATAATTAGTGTCTGAAGTATTTTAAAAAAAAAA
1 AAATGCATTCTTTTATAATTAGTGTCTGAAGTATTTTAAAAAAAAAA
1911568 TAGTTAATTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (51 bp):
AAATGCATTCTTTTATAATTAGTGTCTGAAGTATTTTAAAAAAAAAAATAG
Found at i:1915404 original size:66 final size:66
Alignment explanation
Indices: 1915298--1915439 Score: 275
Period size: 66 Copynumber: 2.2 Consensus size: 66
1915288 TATTCTATCG
1915298 ATCTCTTTCTCTCATTTCCTTCAACTGGTACTTTGGTTGAATATTAGTAGGGTATCTCTACCTCT
1 ATCTCTTTCTCTCATTTCCTTCAACTGGTACTTTGGTTGAATATTAGTAGGGTATCTCTACCTCT
1915363 C
66 C
*
1915364 ATCTCTTTCTCTCCTTTCCTTCAACTGGTACTTTGGTTGAATATTAGTAGGGTATCTCTACCTCT
1 ATCTCTTTCTCTCATTTCCTTCAACTGGTACTTTGGTTGAATATTAGTAGGGTATCTCTACCTCT
1915429 C
66 C
1915430 ATCTCTTTCT
1 ATCTCTTTCT
1915440 TTCCCTACTT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 75 1.00
ACGTcount: A:0.17, C:0.25, G:0.13, T:0.45
Consensus pattern (66 bp):
ATCTCTTTCTCTCATTTCCTTCAACTGGTACTTTGGTTGAATATTAGTAGGGTATCTCTACCTCT
C
Found at i:1918050 original size:12 final size:12
Alignment explanation
Indices: 1918033--1918059 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
1918023 ATACACACCT
1918033 GTGTGCTAGGTC
1 GTGTGCTAGGTC
1918045 GTGTGCTAGGTC
1 GTGTGCTAGGTC
1918057 GTG
1 GTG
1918060 CCAAACCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.15, G:0.44, T:0.33
Consensus pattern (12 bp):
GTGTGCTAGGTC
Found at i:1918124 original size:12 final size:12
Alignment explanation
Indices: 1918107--1918150 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
1918097 CAAGTCACAA
1918107 GCCGTGTGCTAG
1 GCCGTGTGCTAG
1918119 GCCGTGTGCTAG
1 GCCGTGTGCTAG
1918131 GCCGTGTGCTAG
1 GCCGTGTGCTAG
*
1918143 GTCGTGTG
1 GCCGTGTG
1918151 GAGCATACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.07, C:0.23, G:0.43, T:0.27
Consensus pattern (12 bp):
GCCGTGTGCTAG
Found at i:1934788 original size:36 final size:36
Alignment explanation
Indices: 1934747--1934819 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
1934737 CGAAAGGGGA
1934747 AAATAAGCTGAAAGGTATTCTGGAAAATATGAAAGC
1 AAATAAGCTGAAAGGTATTCTGGAAAATATGAAAGC
1934783 AAATAAGCTGAAAGGTATTCTGGAAAATATGAAAGC
1 AAATAAGCTGAAAGGTATTCTGGAAAATATGAAAGC
1934819 A
1 A
1934820 TTTCGGGGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.48, C:0.08, G:0.22, T:0.22
Consensus pattern (36 bp):
AAATAAGCTGAAAGGTATTCTGGAAAATATGAAAGC
Found at i:1939483 original size:42 final size:42
Alignment explanation
Indices: 1939394--1939498 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 42
1939384 AAGGCTGCAT
* * * * **
1939394 AGAAGCACATAAGTGCTAAACGGAAACCTGTAAGGGTTAAAC
1 AGAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGTTAAAC
* * * *
1939436 AGAAGCTTATAATAGCTGAACGGAAACCCATAAGGGTTAAAT
1 AGAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGTTAAAC
*
1939478 TGAAGCTCAAAAGAGCTGAAC
1 AGAAGCTCAAAAGAGCTGAAC
1939499 TAAAACCTAA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (42 bp):
AGAAGCTCAAAAGAGCTGAACGGAAACCCATAAGGGTTAAAC
Found at i:1939505 original size:42 final size:42
Alignment explanation
Indices: 1939424--1939519 Score: 102
Period size: 42 Copynumber: 2.3 Consensus size: 42
1939414 CGGAAACCTG
* * * *
1939424 TAAGGGTTAAACAGAAGCTTATAATAGCTGAACGGAAACCCA
1 TAAGGGTTAAACAGAAGCTCAAAAGAGCTGAACGAAAACCCA
** * *
1939466 TAAGGGTTAAATTGAAGCTCAAAAGAGCTGAACTAAAACCTA
1 TAAGGGTTAAACAGAAGCTCAAAAGAGCTGAACGAAAACCCA
* *
1939508 AAAAGGTTAAAC
1 TAAGGGTTAAAC
1939520 TGAGACTCAT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (42 bp):
TAAGGGTTAAACAGAAGCTCAAAAGAGCTGAACGAAAACCCA
Found at i:1944806 original size:49 final size:49
Alignment explanation
Indices: 1944751--1944847 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
1944741 TTGCTCGCTC
*
1944751 GTTCCTTGTATGATTCATCCTATACATACATTCGCAACTTTTTTTTAGT
1 GTTCCTTGTATGATTCATCCTATACATACATTCGCAACTGTTTTTTAGT
1944800 GTTCCTTGTATGATTCATCCTATACATACATTCGCAACTGTTTTTTAG
1 GTTCCTTGTATGATTCATCCTATACATACATTCGCAACTGTTTTTTAG
1944848 CTTGCTCCAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.45
Consensus pattern (49 bp):
GTTCCTTGTATGATTCATCCTATACATACATTCGCAACTGTTTTTTAGT
Found at i:1946427 original size:2 final size:2
Alignment explanation
Indices: 1946416--1946456 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
1946406 TGTTGTAAAT
1946416 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1946457 GGGAAGAGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1947668 original size:13 final size:15
Alignment explanation
Indices: 1947634--1947667 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 15
1947624 ATGTCGTGCA
1947634 AATAAACATAGAAAAT
1 AATAAACATA-AAAAT
1947650 AATAAACATAAAATAT
1 AATAAACATAAAA-AT
1947666 AA
1 AA
1947668 AATTACATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.21
Consensus pattern (15 bp):
AATAAACATAAAAAT
Found at i:1948169 original size:7 final size:7
Alignment explanation
Indices: 1948157--1948284 Score: 85
Period size: 7 Copynumber: 18.1 Consensus size: 7
1948147 AATTATACAT
1948157 AATAATA
1 AATAATA
1948164 AATAATA
1 AATAATA
1948171 AATAAT-
1 AATAATA
1948177 -ATAATA
1 AATAATA
*
1948183 TATAATA
1 AATAATA
*
1948190 TATAATA
1 AATAATA
1948197 AA-ATATA
1 AATA-ATA
1948204 AATAATA
1 AATAATA
1948211 TAATGAAT-
1 -AAT-AATA
1948219 AATATATA
1 AATA-ATA
1948227 CAAT-A-A
1 -AATAATA
1948233 AAT-ATA
1 AATAATA
1948239 AATAATA
1 AATAATA
1948246 TAATAA-A
1 -AATAATA
1948253 TAATACATA
1 -AATA-ATA
1948262 AATAA-A
1 AATAATA
1948268 AATAATA
1 AATAATA
1948275 TATATAATA
1 -A-ATAATA
1948284 A
1 A
1948285 TTTTTTACAT
Statistics
Matches: 103, Mismatches: 1, Indels: 33
0.75 0.01 0.24
Matches are distributed among these distances:
5 9 0.09
6 13 0.13
7 52 0.50
8 16 0.16
9 13 0.13
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:1948182 original size:19 final size:19
Alignment explanation
Indices: 1948158--1948274 Score: 105
Period size: 19 Copynumber: 6.7 Consensus size: 19
1948148 ATTATACATA
1948158 ATAATAAATAATAAATAAT
1 ATAATAAATAATAAATAAT
1948177 ATAAT--AT-AT-AAT-AT
1 ATAATAAATAATAAATAAT
1948191 ATAATAAA-ATATAAATAAT
1 ATAATAAATA-ATAAATAAT
*
1948210 ATAATGAATAAT--AT-AT
1 ATAATAAATAATAAATAAT
*
1948226 ACAATAAA-ATATAAATAAT
1 ATAATAAATA-ATAAATAAT
*
1948245 ATAATAAATAATACATAA-
1 ATAATAAATAATAAATAAT
1948263 ATAA-AAATAATA
1 ATAATAAATAATA
1948275 TATATAATAA
Statistics
Matches: 81, Mismatches: 5, Indels: 26
0.72 0.04 0.23
Matches are distributed among these distances:
14 7 0.09
15 4 0.05
16 13 0.16
17 14 0.17
18 9 0.11
19 32 0.40
20 2 0.02
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.32
Consensus pattern (19 bp):
ATAATAAATAATAAATAAT
Found at i:1948233 original size:35 final size:33
Alignment explanation
Indices: 1948163--1948285 Score: 162
Period size: 33 Copynumber: 3.6 Consensus size: 33
1948153 ACATAATAAT
1948163 AAATAATAAATAATATAATATATAATATAT-AATA
1 AAAT-ATAAATAATATAATA-ATAATATATAAATA
1948197 AAATATAAATAATATAATGAATAATATATACAATA
1 AAATATAAATAATATAAT-AATAATATATA-AATA
*
1948232 AAATATAAATAATATAATAAATAATACATAAATA
1 AAATATAAATAATATAAT-AATAATATATAAATA
1948266 AAA-AT-AATATATATAATAAT
1 AAATATAAATA-ATATAATAAT
1948286 TTTTTACATA
Statistics
Matches: 83, Mismatches: 2, Indels: 10
0.87 0.02 0.11
Matches are distributed among these distances:
32 7 0.08
33 32 0.39
34 12 0.14
35 32 0.39
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.33
Consensus pattern (33 bp):
AAATATAAATAATATAATAATAATATATAAATA
Found at i:1948310 original size:19 final size:21
Alignment explanation
Indices: 1948272--1948310 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1948262 AATAAAAATA
*
1948272 ATATATATAATAATTTTTTAC
1 ATATATATAATAATTGTTTAC
1948293 ATATATA-AATAA-TGTTTA
1 ATATATATAATAATTGTTTA
1948311 TAGTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 5 0.29
21 7 0.41
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (21 bp):
ATATATATAATAATTGTTTAC
Found at i:1948394 original size:29 final size:29
Alignment explanation
Indices: 1948317--1948373 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
1948307 TTTATAGTAA
*
1948317 AAATAAA-TACTATATAAAATATTTAAAAT
1 AAATAAATTA-TATATAAAAAATTTAAAAT
1948346 AAATAAATTATATATAAAAAATTTAAAA
1 AAATAAATTATATATAAAAAATTTAAAA
1948374 AAGATTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 24 0.92
30 2 0.08
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (29 bp):
AAATAAATTATATATAAAAAATTTAAAAT
Found at i:1948567 original size:30 final size:30
Alignment explanation
Indices: 1948531--1948589 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
1948521 TATAATGGCC
* *
1948531 ATTAGGGCTAAAGTGAAACAAAAATAAAAG
1 ATTAGGGCCAAAGTAAAACAAAAATAAAAG
* *
1948561 ATTAGGGCCAAATTAAAATAAAAATAAAA
1 ATTAGGGCCAAAGTAAAACAAAAATAAAA
1948590 TGAAATTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.59, C:0.07, G:0.15, T:0.19
Consensus pattern (30 bp):
ATTAGGGCCAAAGTAAAACAAAAATAAAAG
Found at i:1949824 original size:45 final size:45
Alignment explanation
Indices: 1949765--1950581 Score: 186
Period size: 45 Copynumber: 18.0 Consensus size: 45
1949755 CCATGCTGAT
* *
1949765 ATCTTTGACCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTC
1 ATCTTCGATCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTC
* * * * * * * *
1949810 ATCTTCGATTTGC-TT-CGATGTAAACACACAAATGTCATATCTG-C
1 ATCTTCGATCTGCTTTCCG-TCT-AATACAGAGACGCCAAATCTGTC
*
1949854 TATCTTTGATCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTC
1 -ATCTTCGATCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTC
** * * * * * * *
1949900 ATATCTGTC-ATCTTCGATCTGCTTCAATGTAAACACACAAATGTCAGATCTG-C
1 --ATCT-TCGATC-T-G--CT--TTCCGTCT-AATACAGAGACGCCAAATCTGTC
** * * *
1949953 TATCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAACTCTGTC
1 -ATCTTCGATCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTC
* * * * * * * * *
1949999 ATTTTCGATCTAC-TT-CGATGTAAACACACAAATGTCAGATCTG-C
1 ATCTTCGATCTGCTTTCCG-TCT-AATACAGAGACGCCAAATCTGTC
* * * *
1950043 TATCTTCAATCTGC-TCCCTGTCTAATACAGAAACGCCAAATCTATC
1 -ATCTTCGATCTGCTTTCC-GTCTAATACAGAGACGCCAAATCTGTC
* * * * * * * * *
1950089 ATCTTCAATCTGC-TT-CGATGTAAACACACAAATGTCAGATCT-AC
1 ATCTTCGATCTGCTTTCCG-TCT-AATACAGAGACGCCAAATCTGTC
* ** *
1950133 TATATTCGATCTGCTCCCCGTTTAATACAGAGACGCCAAATCTGTC
1 -ATCTTCGATCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTC
* * * * * * * *
1950179 ATCTTCGATCTGCTTT--GATGTAAACACACAAATGTCAGATATG-C
1 ATCTTCGATCTGCTTTCCG-TCT-AATACAGAGACGCCAAATCTGTC
* * * * *
1950223 TATCTTCGATCTGCTTT--GATGTAA-ACACACGAATGTCAGATCTG-C
1 -ATCTTCGATCTGCTTTCCG-TCTAATACAGA-G-ACGCCAAATCTGTC
* *
1950268 TATCTTCGATCTGC-TCCGCGTCTAATACAGAGATGCCAAATCTGTC
1 -ATCTTCGATCTGCTTTC-CGTCTAATACAGAGACGCCAAATCTGTC
* * * * *
1950314 ATCTTCGATCTGC-TT-CGATGTAA-ACACACGAATGTCAGATCTG-C
1 ATCTTCGATCTGCTTTCCG-TCTAATACAGA-G-ACGCCAAATCTGTC
** *
1950358 TATCTTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTC
1 -ATCTTCGATCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTC
* * * * * * *
1950404 ATCTTCGATCTGC-TT-CGATGTAA-ACACACGAATGTCAGATTTGTT
1 ATCTTCGATCTGCTTTCCG-TCTAATACAGA-G-ACGCCAAATCTGTC
* * * * * * * *
1950449 ATCTTTGATCTAC-TCCTCATCAAATATAGAGATGCCAAATTTGTC
1 ATCTTCGATCTGCTTTC-CGTCTAATACAGAGACGCCAAATCTGTC
* * *
1950494 ATCTTCGATCTGCTTT--GATGTAA-ACACACGAATGCCAAATCTG-C
1 ATCTTCGATCTGCTTTCCG-TCTAATACAGA-G-ACGCCAAATCTGTC
** *
1950538 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGTCAAATCTG
1 -ATCTTCGATCTGCTTTCCGTCTAATACAGAGACGCCAAATCTG
1950582 CTTCCGGTGA
Statistics
Matches: 564, Mismatches: 147, Indels: 122
0.68 0.18 0.15
Matches are distributed among these distances:
43 26 0.05
44 34 0.06
45 393 0.70
46 38 0.07
47 33 0.06
48 4 0.01
49 1 0.00
50 1 0.00
51 5 0.01
52 8 0.01
53 6 0.01
54 15 0.03
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTTCGATCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTC
Found at i:1949876 original size:90 final size:90
Alignment explanation
Indices: 1949764--1950238 Score: 637
Period size: 90 Copynumber: 5.2 Consensus size: 90
1949754 GCCATGCTGA
* * * *
1949764 TATCTTTGACCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATTTGCTTCGAT
1 TATCTTCGATCTGCTTCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
1949829 GTAAACACACAAATGTCATATCTGC
66 GTAAACACACAAATGTCAGATCTGC
* *
1949854 TATCTTTGATCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTCATATCTGTCATCTTCGATC
1 TATCTTCGATCTGCTTCCCGTCTAATACAGAGACGCC--A------A-ATCTGTCATCTTCGATC
*
1949919 TGCTTCAATGTAAACACACAAATGTCAGATCTGC
57 TGCTTCGATGTAAACACACAAATGTCAGATCTGC
* * * * * *
1949953 TATCTTCGATCTGCTCCCCGTTTAATACAGAGATGCCAACTCTGTCATTTTCGATCTACTTCGAT
1 TATCTTCGATCTGCTTCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
1950018 GTAAACACACAAATGTCAGATCTGC
66 GTAAACACACAAATGTCAGATCTGC
* * * *
1950043 TATCTTCAATCTGC-TCCCTGTCTAATACAGAAACGCCAAATCTATCATCTTCAATCTGCTTCGA
1 TATCTTCGATCTGCTTCCC-GTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGA
*
1950107 TGTAAACACACAAATGTCAGATCTAC
65 TGTAAACACACAAATGTCAGATCTGC
* * * *
1950133 TATATTCGATCTGCTCCCCGTTTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTTGAT
1 TATCTTCGATCTGCTTCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
*
1950198 GTAAACACACAAATGTCAGATATGC
66 GTAAACACACAAATGTCAGATCTGC
1950223 TATCTTCGATCTGCTT
1 TATCTTCGATCTGCTT
1950239 TGATGTAAAC
Statistics
Matches: 338, Mismatches: 36, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
89 3 0.01
90 248 0.73
91 4 0.01
92 1 0.00
97 1 0.00
98 1 0.00
99 80 0.24
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (90 bp):
TATCTTCGATCTGCTTCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
GTAAACACACAAATGTCAGATCTGC
Found at i:1950266 original size:90 final size:90
Alignment explanation
Indices: 1949902--1950552 Score: 469
Period size: 90 Copynumber: 7.2 Consensus size: 90
1949892 AATCTGTCAT
*
1949902 ATCTGTCATCTTCGATCTGCTTCAATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
1 ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
* * *
1949967 TCCCCG-T-TTAATACA-GAGATGCCAA
66 T--TCGATGTAAACACACGA-ATGCCAA
* * * *
1949992 CTCTGTCATTTTCGATCTACTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCAATCTGC
1 ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
** * * *
1950057 -TCCCTGTCTAATACA-GAAACGCCAA
66 TTCGATGT-AAACACACG-AATGCCAA
* * * *
1950082 ATCTATCATCTTCAATCTGCTTCGATGTAAACACACAAATGTCAGATCTACTATATTCGATCTGC
1 ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
* * * *
1950147 TCCCCG-T-TTAATACA-GAGACGCCAA
66 T--TCGATGTAAACACACGA-ATGCCAA
* *
1950172 ATCTGTCATCTTCGATCTGCTTTGATGTAAACACACAAATGTCAGATATGCTATCTTCGATCTGC
1 ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
* * *
1950237 TTTGATGTAAACACACGAATGTCAG
66 TTCGATGTAAACACACGAATGCCAA
* * * * * * * *
1950262 ATCTG-CTATCTTCGATCTGCTCCG-CGTCTAATACAGAGATGCCAAATCTG-TCATCTTCGATC
1 ATCTGTC-ATCTTCGATCTGCTTCGATGT-AAACACACAAATGTCAGATCTGCT-ATCTTCGATC
* *
1950324 TGCTTCGATGTAAACACACGAATGTCAG
63 TGCTTCGATGTAAACACACGAATGCCAA
* * * * * *
1950352 ATCTG-CTATCTTCGATCTGCTCCCCG-TCTAATACA-A-AGACGCCAAATCTG-TCATCTTCGA
1 ATCTGTC-ATCTTCGATCTGCT--TCGATGTAA-ACACACAAATGTCAGATCTGCT-ATCTTCGA
* *
1950412 TCTGCTTCGATGTAAACACACGAATGTCAG
61 TCTGCTTCGATGTAAACACACGAATGCCAA
* * * * * * * * * * * *
1950442 ATTTGTTATCTTTGATCTACTCCTC-AT-CAAATATAGAGATGCCAAATTTG-TCATCTTCGATC
1 ATCTGTCATCTTCGATCTGCT--TCGATGTAAACACACAAATGTCAGATCTGCT-ATCTTCGATC
*
1950504 TGCTTTGATGTAAACACACGAATGCCAA
63 TGCTTCGATGTAAACACACGAATGCCAA
1950532 ATCTG-CTATCTTCGATCTGCT
1 ATCTGTC-ATCTTCGATCTGCT
1950553 CCCCGTCTAA
Statistics
Matches: 476, Mismatches: 63, Indels: 44
0.82 0.11 0.08
Matches are distributed among these distances:
87 1 0.00
88 4 0.01
89 10 0.02
90 447 0.94
91 6 0.01
92 7 0.01
93 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (90 bp):
ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
TTCGATGTAAACACACGAATGCCAA
Found at i:1950308 original size:225 final size:225
Alignment explanation
Indices: 1950002--1950462 Score: 744
Period size: 225 Copynumber: 2.0 Consensus size: 225
1949992 CTCTGTCATT
1950002 TTCGATCTACTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCAATCTGCTCCCTGTCTA
1 TTCGATCTACTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCAATCTGCTCCCTGTCTA
1950067 ATACAGAAACGCCAAATCTATCATCTTCAATCTGCTTCGATGTAAACACACAAATGTCAGATCTA
66 ATACAGAAACGCCAAATCTATCATCTTCAATCTGCTTCGATGTAAACACACAAATGTCAGATCTA
* * *
1950132 CTATATTCGATCTGCTCCCCGTTTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTTGA
131 CTATATTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTTCGA
1950197 TGTAAACACACAAATGTCAGATATGCTATC
196 TGTAAACACACAAATGTCAGATATGCTATC
* * * *
1950227 TTCGATCTGCTTTGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCGC-GTCT
1 TTCGATCTACTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCAATCTGCTCC-CTGTCT
* * * * *
1950291 AATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCT
65 AATACAGAAACGCCAAATCTATCATCTTCAATCTGCTTCGATGTAAACACACAAATGTCAGATCT
* *
1950356 GCTATCTTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTTCG
130 ACTATATTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTTCG
* * *
1950421 ATGTAAACACACGAATGTCAGATTTGTTATC
195 ATGTAAACACACAAATGTCAGATATGCTATC
*
1950452 TTTGATCTACT
1 TTCGATCTACT
1950463 CCTCATCAAA
Statistics
Matches: 216, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
225 215 1.00
226 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (225 bp):
TTCGATCTACTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCAATCTGCTCCCTGTCTA
ATACAGAAACGCCAAATCTATCATCTTCAATCTGCTTCGATGTAAACACACAAATGTCAGATCTA
CTATATTCGATCTGCTCCCCGTCTAATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTTCGA
TGTAAACACACAAATGTCAGATATGCTATC
Found at i:1950323 original size:180 final size:180
Alignment explanation
Indices: 1949781--1950327 Score: 577
Period size: 180 Copynumber: 3.0 Consensus size: 180
1949771 GACCTGCTTT
* *
1949781 CCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATTTGCTTCGATGTAAACACACAAATGTC
1 CCGTTTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTC
* * * *
1949846 ATATCTGCTATCTTTGATCTGCTTTCCGTCTAATACAGAGACGCCAAATCTGTCATATCTGTCAT
66 AGATCTGCTATCTTCGATCTGCTTT--GTCTAA-AC--ACACG--AAA--TGTCAGATCTGTCAT
*** * *
1949911 CTTCGATCTGCTTCAATGTAAACACACAAATGTCAGATCTG-CTATCTTCGATCTGCTCC
122 CTTCGATCTGC-TCCGCGTAAACACACAAATGCCAAATCTGTCTATCTTCGATCTGCTCC
* * * *
1949970 CCGTTTAATACAGAGATGCCAACTCTGTCATTTTCGATCTACTTCGATGTAAACACACAAATGTC
1 CCGTTTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTC
* * * * * * * *
1950035 AGATCTGCTATCTTCAATCTGCTCCCTGTCT-AATACA-GAAACGCCAAATCTATCATCTTCAAT
66 AGATCTGCTATCTTCGATCTGCT--TTGTCTAAACACACGAAATGTCAGATCTGTCATCTTCGAT
* * * * * *
1950098 CTGCTTCGATGTAAACACACAAATGTCAGATCT-ACTATATTCGATCTGCTCC
129 CTGCTCCG-CGTAAACACACAAATGCCAAATCTGTCTATCTTCGATCTGCTCC
*
1950150 CCGTTTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTTGATGTAAACACACAAATGTC
1 CCGTTTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTC
* *
1950215 AGATATGCTATCTTCGATCTGCTTTGATGTAAACACACG-AATGTCAGATCTG-CTATCTTCGAT
66 AGATCTGCTATCTTCGATCTGCTTTG-TCTAAACACACGAAATGTCAGATCTGTC-ATCTTCGAT
* * * *
1950278 CTGCTCCGCGTCTAATACAGAGATGCCAAATCTGTC-ATCTTCGATCTGCT
129 CTGCTCCGCGT-AAACACACAAATGCCAAATCTGTCTATCTTCGATCTGCT
1950328 TCGATGTAAA
Statistics
Matches: 302, Mismatches: 46, Indels: 29
0.80 0.12 0.08
Matches are distributed among these distances:
178 2 0.01
179 6 0.02
180 200 0.66
181 2 0.01
182 3 0.01
184 1 0.00
185 2 0.01
187 1 0.00
188 1 0.00
189 83 0.27
191 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (180 bp):
CCGTTTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTC
AGATCTGCTATCTTCGATCTGCTTTGTCTAAACACACGAAATGTCAGATCTGTCATCTTCGATCT
GCTCCGCGTAAACACACAAATGCCAAATCTGTCTATCTTCGATCTGCTCC
Found at i:1950401 original size:135 final size:133
Alignment explanation
Indices: 1949902--1950581 Score: 443
Period size: 135 Copynumber: 5.0 Consensus size: 133
1949892 AATCTGTCAT
*
1949902 ATCTGTCATCTTCGATCTGCTTCAATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
1 ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
* * * * * * * * * * *
1949967 TCCCCG-TTTAATACA-GAGATGCCAACTCTGTCATTTTCGATCTACTTCGATGTAAACACACAA
66 T--CCGATGTAA-ACACAAGATGCCAAATCTGTCATCTTCGATCTGCTCCG-CGTTAATACAGAG
* *
1950030 ATGTCAG
127 ATGCCAA
* ** * * * * * * * *
1950037 ATCTG-CTATCTTCAATCTGC-TCCCTGTCTAATACAGAAACGCCAAATCT-ATCATCTTCAATC
1 ATCTGTC-ATCTTCGATCTGCTTCGATGT-AAACACACAAATGTCAGATCTGCT-ATCTTCGATC
* * * * * * *
1950099 TGCTTCGATGTAAACACACAAATGTCAGATCT-ACTATATTCGATCTGCTCCCCGTTTAATACAG
63 TGCTCCGATGTAAACACA-AGATGCCAAATCTGTC-ATCTTCGATCTGCTCCGCG-TTAATACAG
*
1950163 AGACGCCAA
125 AGATGCCAA
* *
1950172 ATCTGTCATCTTCGATCTGCTTTGATGTAAACACACAAATGTCAGATATGCTATCTTCGATCTGC
1 ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
** * * *
1950237 TTTGATGTAAACACACGAATGTCAGATCTG-CTATCTTCGATCTGCTCCGCGTCTAATACAGAGA
66 TCCGATGTAAACACAAG-ATGCCAAATCTGTC-ATCTTCGATCTGCTCCGCGT-TAATACAGAGA
1950301 TGCCAA
128 TGCCAA
*
1950307 ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGC
1 ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
* * * * * *
1950372 TCCCCG-TCTAATACA-AAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACACACGA
66 T--CCGATGTAA-ACACAAGATGCCAAATCTGTCATCTTCGATCTGCTCCG-CGTTAATACA-GA
* *
1950435 -ATGTCAG
126 GATGCCAA
* * * * * * * * * * * *
1950442 ATTTGTTATCTTTGATCTACTCCTC-AT-CAAATATAGAGATGCCAAATTTG-TCATCTTCGATC
1 ATCTGTCATCTTCGATCTGCT--TCGATGTAAACACACAAATGTCAGATCTGCT-ATCTTCGATC
** * *
1950504 TGCTTTGATGTAAACACACGAATGCCAAATCTG-CTATCTTCGATCTGCTCCCCGTCTAATACAG
63 TGCTCCGATGTAAACACAAG-ATGCCAAATCTGTC-ATCTTCGATCTGCTCCGCGT-TAATACAG
* *
1950568 AGACGTCAA
125 AGATGCCAA
1950577 ATCTG
1 ATCTG
1950582 CTTCCGGTGA
Statistics
Matches: 424, Mismatches: 92, Indels: 58
0.74 0.16 0.10
Matches are distributed among these distances:
133 9 0.02
134 26 0.06
135 364 0.86
136 19 0.04
137 6 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (133 bp):
ATCTGTCATCTTCGATCTGCTTCGATGTAAACACACAAATGTCAGATCTGCTATCTTCGATCTGC
TCCGATGTAAACACAAGATGCCAAATCTGTCATCTTCGATCTGCTCCGCGTTAATACAGAGATGC
CAA
Found at i:1950594 original size:90 final size:90
Alignment explanation
Indices: 1950224--1950581 Score: 554
Period size: 90 Copynumber: 4.0 Consensus size: 90
1950214 CAGATATGCT
* *
1950224 ATCTTCGATCTGCTTTGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCGCGT
1 ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGT
*
1950289 CTAATACAGAGATGCCAAATCTGTC
66 CTAATACAGAGACGCCAAATCTGTC
1950314 ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGT
1 ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGT
*
1950379 CTAATACAAAGACGCCAAATCTGTC
66 CTAATACAGAGACGCCAAATCTGTC
* * * * * *
1950404 ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATTTGTTATCTTTGATCTACTCCTCAT
1 ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGT
* * * *
1950469 CAAATATAGAGATGCCAAATTTGTC
66 CTAATACAGAGACGCCAAATCTGTC
* * *
1950494 ATCTTCGATCTGCTTTGATGTAAACACACGAATGCCAAATCTGCTATCTTCGATCTGCTCCCCGT
1 ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGT
*
1950559 CTAATACAGAGACGTCAAATCTG
66 CTAATACAGAGACGCCAAATCTG
1950582 CTTCCGGTGA
Statistics
Matches: 239, Mismatches: 29, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 239 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (90 bp):
ATCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGT
CTAATACAGAGACGCCAAATCTGTC
Done.