Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 67 of 292
Found at i:20164467 original size:39 final size:39
Alignment explanation
Indices: 20164392--20164467 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
20164382 TGTGATTCCA
* **
20164392 GACTTAAGGTCCGTAGGCTATGTACTGGAATTATATCCG
1 GACTTAAGGTCCGTAGGCTACGTACTGGAAAAATATCCG
*
20164431 GACTTAAGGTCCGTAGGCTACGTGCTGGAAAAATATC
1 GACTTAAGGTCCGTAGGCTACGTACTGGAAAAATATC
20164468 TAGACTAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (39 bp):
GACTTAAGGTCCGTAGGCTACGTACTGGAAAAATATCCG
Found at i:20165506 original size:27 final size:27
Alignment explanation
Indices: 20165483--20165606 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
20165473 CAATTTACAG
20165483 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
20165510 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
20165537 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
20165564 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
20165591 AATTACTAAAATACCC
1 AATTACCAAAATACCC
20165607 CTCTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:20165525 original size:54 final size:53
Alignment explanation
Indices: 20165467--20165606 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
20165457 ATTACCGTTT
20165467 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
20165521 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
20165575 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
20165607 CTCTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:20165619 original size:27 final size:27
Alignment explanation
Indices: 20165589--20165650 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
20165579 CATGGTTTGA
20165589 AAAATTACTAAAATACCCCTCTAGGGT
1 AAAATTACTAAAATACCCCTCTAGGGT
* * * *
20165616 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTCTAGGGT
20165643 AAAATTAC
1 AAAATTAC
20165651 CATTTTGCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTCTAGGGT
Found at i:20165619 original size:54 final size:53
Alignment explanation
Indices: 20165483--20165633 Score: 160
Period size: 54 Copynumber: 2.8 Consensus size: 53
20165473 CAATTTACAG
* * * * * *
20165483 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTAG-TGATAAAATTACCAAAATACCCATGGTTTGAAA
* *
20165537 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTAG-TGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
20165591 AATTACTAAAATACCCCTCTAG-GGTAAAATTACTGAAATACCC
1 AATTACTAAAATA-CCCT-TAGTGATAAAATTACCAAAATACCC
20165634 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
54 79 0.93
55 4 0.05
56 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACTAAAATACCCTTAGTGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:20165635 original size:81 final size:81
Alignment explanation
Indices: 20165483--20165635 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
20165473 CAATTTACAG
* * **
20165483 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGCTGGGTAAAATTACTAAAA
20165548 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
20165564 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-CTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGCT-GGGTAAAATTACTAA
20165627 AATACCCTT
64 AATACCCTT
20165636 GTGGGGTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
80 1 0.02
81 61 0.97
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGCTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:20166302 original size:28 final size:28
Alignment explanation
Indices: 20166270--20166338 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
20166260 GCGTAGATCA
20166270 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
20166298 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
20166326 CGATA-TACCCCTA
1 CGAAATTACCCCTA
20166339 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:20169470 original size:27 final size:27
Alignment explanation
Indices: 20169402--20169472 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
20169392 CGACTTGTAA
* *
20169402 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAATAC-CCTCAATTTACAG
****
20169429 AATTACCGTTTTACCCTCAATTTACAG
1 AATTACCAAAATACCCTCAATTTACAG
20169456 AATTACCAAAATACCCT
1 AATTACCAAAATACCCT
20169473 TGGTTTATAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCAATTTACAG
Found at i:20169479 original size:27 final size:27
Alignment explanation
Indices: 20169456--20169579 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
20169446 CAATTTACAG
20169456 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
20169483 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
20169510 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
20169537 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
20169564 AATTACTAAAATACCC
1 AATTACCAAAATACCC
20169580 CTCTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:20169498 original size:54 final size:53
Alignment explanation
Indices: 20169440--20169579 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 53
20169430 ATTACCGTTT
20169440 TACCCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
1 TACCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * * *
20169494 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATTACCAAAA
1 TA-CCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
*** * *
20169548 TACCCATGGTTTGAAAAATTACTAAAATACCC
1 TACCC-TCAATTGTAAAATTACCAAAATACCC
20169580 CTCTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.04
54 64 0.84
55 7 0.09
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (53 bp):
TACCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAA
Found at i:20169592 original size:27 final size:27
Alignment explanation
Indices: 20169562--20169623 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
20169552 CATGGTTTGA
20169562 AAAATTACTAAAATACCCCTCTAGGGT
1 AAAATTACTAAAATACCCCTCTAGGGT
* * * *
20169589 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTCTAGGGT
20169616 AAAATTAC
1 AAAATTAC
20169624 CATTTTGCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTCTAGGGT
Found at i:20169592 original size:54 final size:53
Alignment explanation
Indices: 20169456--20169606 Score: 160
Period size: 54 Copynumber: 2.8 Consensus size: 53
20169446 CAATTTACAG
* * * * * *
20169456 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTAG-TGATAAAATTACCAAAATACCCATGGTTTGAAA
* *
20169510 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTTAG-TGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
20169564 AATTACTAAAATACCCCTCTAG-GGTAAAATTACTGAAATACCC
1 AATTACTAAAATA-CCCT-TAGTGATAAAATTACCAAAATACCC
20169607 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
54 79 0.93
55 4 0.05
56 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACTAAAATACCCTTAGTGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:20169608 original size:81 final size:81
Alignment explanation
Indices: 20169456--20169608 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
20169446 CAATTTACAG
* * **
20169456 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGCTGGGTAAAATTACTAAAA
20169521 TACCCTTTGTTTATAA
66 TACCCTTTGTTTATAA
* * *
20169537 AATTACCAAAATACCCATGGTTTGA-AAAATTACTAAAATACCCCT-CTAGGGTAAAATTACTGA
1 AATTACCAAAATACCCATGGTTT-ATAAAATCACCAAAATACCCCTGCT-GGGTAAAATTACTAA
20169600 AATACCCTT
64 AATACCCTT
20169609 GTGGGGTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
80 1 0.02
81 61 0.97
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGCTGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:20170275 original size:28 final size:28
Alignment explanation
Indices: 20170243--20170301 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
20170233 GCGTAGATCA
20170243 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
20170271 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
20170299 CGA
1 CGA
20170302 TATACGCCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:20176665 original size:23 final size:23
Alignment explanation
Indices: 20176626--20176801 Score: 221
Period size: 23 Copynumber: 7.7 Consensus size: 23
20176616 GGAATCTATA
* *
20176626 GGCTCCAATACAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
* *
20176649 GGCTAC-ATCTCAATGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
20176672 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
20176695 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* *
20176718 GGCTAC-ATCTCAGTGGTAGCTTT
1 GGCTACAAT-ACAGTGGTAGCTTC
* * *
20176741 GGCTACAATACAATAGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
20176764 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* *
20176787 GGCTATATTACAGTG
1 GGCTACAATACAGTG
20176802 TGGCACTCTG
Statistics
Matches: 133, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
22 4 0.03
23 125 0.94
24 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (23 bp):
GGCTACAATACAGTGGTAGCTTC
Found at i:20176801 original size:69 final size:69
Alignment explanation
Indices: 20176626--20176791 Score: 269
Period size: 69 Copynumber: 2.4 Consensus size: 69
20176616 GGAATCTATA
* * * * *
20176626 GGCTCCAATACAGTGGTAGCTTTGGCTACATCTCAATGGTAGCTTCGGCTACAATACAGTGGTAG
1 GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAATAGTAG
20176691 CTTC
66 CTTC
*
20176695 GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTTGGCTACAATACAATAGTAG
1 GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAATAGTAG
*
20176760 CTTT
66 CTTC
20176764 GGCTACAATACAGTGGTAGCTTCGGCTA
1 GGCTACAATACAGTGGTAGCTTCGGCTA
20176792 TATTACAGTG
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 90 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (69 bp):
GGCTACAATACAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAATAGTAG
CTTC
Found at i:20178149 original size:54 final size:54
Alignment explanation
Indices: 20178091--20178204 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
20178081 CAAATTGTAA
* * *
20178091 AATTATCAAAGTGCCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAG
**** * * * *
20178145 AATTACCGTTTTACCTTTGGTTTATAGAATTACTATTTTACCCTTGATTTACAG
1 AATTACCAAAGTACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAG
20178199 AATTAC
1 AATTAC
20178205 TGTTTTACCC
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.41
Consensus pattern (54 bp):
AATTACCAAAGTACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAG
Found at i:20178210 original size:54 final size:54
Alignment explanation
Indices: 20178104--20178259 Score: 177
Period size: 54 Copynumber: 2.9 Consensus size: 54
20178094 TATCAAAGTG
* ** *
20178104 CCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACCGTTTTA
* * * *
20178158 CCTTTGGTTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACCGTTTTA
* * *** * *
20178212 CCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACC
1 CCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACC
20178260 AAAATACCCT
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 85 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACCGTTTTA
Found at i:20178232 original size:27 final size:27
Alignment explanation
Indices: 20178104--20178232 Score: 168
Period size: 27 Copynumber: 4.8 Consensus size: 27
20178094 TATCAAAGTG
* *
20178104 CCCTTGATTTATAGAATTACCGTTTTA
1 CCCTTGATTTACAGAATTACTGTTTTA
* *
20178131 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTTGATTTACAGAATTACTGTTTTA
* * * *
20178158 CCTTTGGTTTATAGAATTACTATTTTA
1 CCCTTGATTTACAGAATTACTGTTTTA
20178185 CCCTTGATTTACAGAATTACTGTTTTA
1 CCCTTGATTTACAGAATTACTGTTTTA
* *
20178212 CCCTCGATTTACAAAATTACT
1 CCCTTGATTTACAGAATTACT
20178233 AAAATACCCT
Statistics
Matches: 88, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (27 bp):
CCCTTGATTTACAGAATTACTGTTTTA
Found at i:20178240 original size:27 final size:27
Alignment explanation
Indices: 20178210--20178567 Score: 181
Period size: 27 Copynumber: 13.2 Consensus size: 27
20178200 ATTACTGTTT
* *
20178210 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
20178237 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
20178264 TACCCTCGA-TCAGTAAAATTACCGAAG
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * * *
20178291 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
20178317 TACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* *
20178344 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
20178371 TA-CCTCTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * * *
20178398 TACCACT-GTTTTGTGAAATTATCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* *
20178425 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
20178452 TACCC-CTGATGTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTATAAAATTACCA-AAA
* * ***
20178479 TACCCTTGACTTTCTAAAAATTATGGAAA
1 TACCCTCGA-TTTAT-AAAATTACCAAAA
* * * * *
20178508 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * * *
20178535 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
20178562 CACCCT
1 TACCCT
20178568 TGTAGGATGA
Statistics
Matches: 254, Mismatches: 62, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
26 28 0.11
27 201 0.79
28 7 0.03
29 18 0.07
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:20178246 original size:81 final size:81
Alignment explanation
Indices: 20178104--20178258 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
20178094 TATCAAAGTG
* * **** *
20178104 CCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCTTTGGTTTA
1 CCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTA
* *
20178169 TAGAATTACTATTTTA
66 CAAAATTACTATTTTA
* *
20178185 CCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTA
1 CCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTA
20178250 CAAAATTAC
66 CAAAATTAC
20178259 CAAAATACCC
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.41
Consensus pattern (81 bp):
CCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTA
CAAAATTACTATTTTA
Found at i:20178268 original size:54 final size:54
Alignment explanation
Indices: 20178210--20178569 Score: 235
Period size: 54 Copynumber: 6.6 Consensus size: 54
20178200 ATTACTGTTT
** *
20178210 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
** * * * * ** * *
20178264 TACCCTCGATCAGTAAAATTACCGAAGTACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * *** **
20178317 TACCC-CTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * *** * *
20178371 TA-CCTCTAGTTTGTAAAATTACCAAAATACCAC-TGTTTTGTGAAATTATCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACC-CTTGGTTTACAAAATTACCAAAA
* * * * *
20178425 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATGTACAAAGTTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCA-AAA
* * *** * *
20178479 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGA-TTTGT-AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * *
20178535 TACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTG
20178570 TAGGATGAAA
Statistics
Matches: 235, Mismatches: 60, Indels: 22
0.74 0.19 0.07
Matches are distributed among these distances:
52 1 0.00
53 45 0.19
54 137 0.58
55 14 0.06
56 37 0.16
57 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:20178268 original size:81 final size:81
Alignment explanation
Indices: 20178089--20178269 Score: 200
Period size: 81 Copynumber: 2.2 Consensus size: 81
20178079 CTCAAATTGT
* * * * * **
20178089 AAAATTATCAAAGTGCCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAA
** * *
20178154 TTTACCTTTGGTTTAT
66 AATACCCTTGGTTTAC
* * *** * *
20178170 AGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAA
1 AAAATTACCAAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAA
20178235 AATACCCTTGGTTTAC
66 AATACCCTTGGTTTAC
20178251 AAAATTACCAAAATACCCT
1 AAAATTACCAAAATACCCT
20178270 CGATCAGTAA
Statistics
Matches: 78, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAA
AATACCCTTGGTTTAC
Found at i:20178417 original size:81 final size:80
Alignment explanation
Indices: 20178224--20178456 Score: 297
Period size: 81 Copynumber: 2.9 Consensus size: 80
20178214 CTCGATTTAC
* ** * * ** *
20178224 AAAATTACTAAAATACC-CTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCG
1 AAAATTACCAAAATACCAC-TGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
*
20178288 AAGTACCCTAGTCTGT
65 AAATACCCTAGTCTGT
* * *
20178304 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
20178369 AATACCTCTAGTTTGT
66 AATACC-CTAGTCTGT
* * *
20178385 AAAATTACCAAAATACCACTGTTTTGTGAAATTATCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
20178450 AATACCC
66 AATACCC
20178457 CTGATGTACA
Statistics
Matches: 135, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
80 61 0.45
81 74 0.55
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCTAGTCTGT
Found at i:20178480 original size:81 final size:81
Alignment explanation
Indices: 20178224--20178482 Score: 285
Period size: 81 Copynumber: 3.2 Consensus size: 81
20178214 CTCGATTTAC
* ** * * ** *
20178224 AAAATTACTAAAATACC-CTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCG
1 AAAATTACCAAAATACCAC-TGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
* *
20178288 AAGTA-CCCTAGTCTGT
65 AAATACCCCTAGTATGT
* * *
20178304 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
* *
20178369 AATACCTCTAGTTTGT
66 AATACCCCTAGTATGT
* * *
20178385 AAAATTACCAAAATACCACTGTTTTGTGAAATTATCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
20178450 AATACCCCT-G-ATGT
66 AATACCCCTAGTATGT
20178464 ACAAAGTTA-CAGAAATACC
1 A-AAA-TTACCA-AAATACC
20178483 CTTGACTTTC
Statistics
Matches: 155, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
79 4 0.03
80 64 0.41
81 87 0.56
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (81 bp):
AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCCTAGTATGT
Found at i:20178623 original size:27 final size:25
Alignment explanation
Indices: 20178590--20178685 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 25
20178580 TGACTAAAAT
*
20178590 ACCCCTATTAGGTAAAAAGACCGTAA
1 ACCCCTA-TAGGTAAAGAGACCGTAA
20178616 AGCCCCTATAGGTTAAAGAGACCGTAA
1 A-CCCCTATAGG-TAAAGAGACCGTAA
* *
20178643 AACCCTATAGGGTAAAGTGACCGTAA
1 ACCCCTATA-GGTAAAGAGACCGTAA
*
20178669 TACCCCTGTATGGTAAA
1 -ACCCCTATA-GGTAAA
20178686 ATGACAAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
26 25 0.42
27 35 0.58
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.21
Consensus pattern (25 bp):
ACCCCTATAGGTAAAGAGACCGTAA
Found at i:20178648 original size:26 final size:25
Alignment explanation
Indices: 20178592--20178673 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 25
20178582 ACTAAAATAC
* *
20178592 CCCTATTAGGTAAAAAGACCGTAAAGC
1 CCCTA-TAGGTAAAGAGACCGTAAA-A
20178619 CCCTATAGGTTAAAGAGACCGTAAAA
1 CCCTATAGG-TAAAGAGACCGTAAAA
* *
20178645 CCCTATAGGGTAAAGTGACCGTAATA
1 CCCTATA-GGTAAAGAGACCGTAAAA
20178671 CCC
1 CCC
20178674 CTGTATGGTA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 28 0.57
27 21 0.43
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (25 bp):
CCCTATAGGTAAAGAGACCGTAAAA
Found at i:20180121 original size:2 final size:2
Alignment explanation
Indices: 20180114--20180144 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
20180104 GAGACTAGTC
20180114 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20180145 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20183096 original size:26 final size:26
Alignment explanation
Indices: 20183067--20183190 Score: 187
Period size: 26 Copynumber: 4.8 Consensus size: 26
20183057 GAGGAAGTGC
* **
20183067 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
20183093 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
20183119 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
20183145 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
20183171 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
20183191 ATTAGAGGCT
Statistics
Matches: 89, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 9 0.10
26 80 0.90
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:20183145 original size:52 final size:52
Alignment explanation
Indices: 20183067--20183190 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
20183057 GAGGAAGTGC
*
20183067 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
20183119 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
20183171 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
20183191 ATTAGAGGCT
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
51 10 0.14
52 60 0.86
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:20183392 original size:42 final size:42
Alignment explanation
Indices: 20183333--20183466 Score: 223
Period size: 42 Copynumber: 3.2 Consensus size: 42
20183323 TAGTGTCCCC
* ** * *
20183333 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
20183375 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
20183417 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
20183459 AAATGGGC
1 AAATGGGC
20183467 CTAAAGGCCA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
Found at i:20183525 original size:31 final size:31
Alignment explanation
Indices: 20183490--20183566 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
20183480 CATTTACAGT
*
20183490 AAAGGCTTCGACCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
* *
20183521 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
20183552 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
20183567 GTAACCATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:20187219 original size:26 final size:26
Alignment explanation
Indices: 20187190--20187255 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
20187180 CATAGCTTAT
20187190 TTTATAAAATTATA-TCATAT-ATATGC
1 TTTA-AAAATTA-ACTCATATGATATGC
* *
20187216 TTTAATAATTAACTTATATGATATGC
1 TTTAAAAATTAACTCATATGATATGC
*
20187242 TTTAATAATTAACT
1 TTTAAAAATTAACT
20187256 TACTTTTATA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
24 1 0.03
25 11 0.31
26 24 0.67
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.47
Consensus pattern (26 bp):
TTTAAAAATTAACTCATATGATATGC
Found at i:20187256 original size:26 final size:25
Alignment explanation
Indices: 20187206--20187257 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
20187196 AAATTATATC
20187206 ATATATATGCTTTAATAATTAACTT
1 ATATATATGCTTTAATAATTAACTT
20187231 ATATGATATGCTTTAATAATTAACTT
1 ATAT-ATATGCTTTAATAATTAACTT
20187257 A
1 A
20187258 CTTTTATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (25 bp):
ATATATATGCTTTAATAATTAACTT
Found at i:20201502 original size:46 final size:44
Alignment explanation
Indices: 20201448--20201571 Score: 151
Period size: 46 Copynumber: 2.7 Consensus size: 44
20201438 GGTGGTATGT
20201448 GAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCATATCATG-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATTGG-CAT-TCA-GAA
* * * *
20201494 GTGCCAGTGTAAGACATGTCTAGGACATGCATTGGTATTGAGACAA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCATTCAG--AA
*
20201540 GAGCTAGTGTAAGACATGTCTGGGACATGCAT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCAT
20201572 CGGTCTCGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
43 1 0.01
44 2 0.03
45 2 0.03
46 63 0.93
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCATTCAGAA
Found at i:20201738 original size:49 final size:49
Alignment explanation
Indices: 20201634--20201766 Score: 144
Period size: 49 Copynumber: 2.7 Consensus size: 49
20201624 CTTATTGTGT
* *
20201634 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTAATAGATGAGA
1 GTCAGTGTAAAACCTGTCTGGGACATGGCATCGACACTAATAGATGAAA
* ** * * *
20201683 GCCAGTGTACTACCTGTCTGGGACATGGTATC-AGC-CTCGATATATGAAA
1 GTCAGTGTAAAACCTGTCTGGGACATGGCATCGA-CACT-AATAGATGAAA
* *
20201732 GTCAGTGTAAAACCTATCTAGGACATGGCATCGAC
1 GTCAGTGTAAAACCTGTCTGGGACATGGCATCGAC
20201767 TTTAATGTGC
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
48 3 0.04
49 64 0.94
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (49 bp):
GTCAGTGTAAAACCTGTCTGGGACATGGCATCGACACTAATAGATGAAA
Found at i:20213928 original size:55 final size:55
Alignment explanation
Indices: 20213743--20213989 Score: 255
Period size: 55 Copynumber: 4.6 Consensus size: 55
20213733 ACACGGGTAC
* * * *
20213743 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-T-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * *
20213792 CTTACCATTGCCATGTCTTGACATGGTCTTACATAGTATCCTTGCCTTAT-G-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * * *
20213845 CTCACCAATGTCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAGAAA
* * *
20213900 CTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACC-T-TAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
*
20213953 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATG
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATG
20213990 ACATCCTTAA
Statistics
Matches: 167, Mismatches: 20, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 50 0.30
54 11 0.07
55 64 0.38
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (55 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
Found at i:20216169 original size:24 final size:24
Alignment explanation
Indices: 20216137--20216183 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
20216127 TTATAATATG
* * *
20216137 AAAATGACCGTTTTGCCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
20216161 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
20216184 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (24 bp):
AAAATGACCATTATACCCCTAGGT
Found at i:20216250 original size:20 final size:20
Alignment explanation
Indices: 20216227--20216265 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
20216217 TAAACATGGT
20216227 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
20216247 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
20216266 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:20216344 original size:24 final size:24
Alignment explanation
Indices: 20216316--20216507 Score: 289
Period size: 24 Copynumber: 8.0 Consensus size: 24
20216306 GAGGAAGTGA
*
20216316 AAAAGGGCTTATGCCCCAGTGATT
1 AAAAGGGCTTATGCCCCAGTTATT
20216340 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
20216364 AAAAGGGCTTATGCCCCAGTGATT
1 AAAAGGGCTTATGCCCCAGTTATT
20216388 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
20216412 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
20216436 AAAAGGGCATATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
20216460 AAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
20216484 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
20216508 ATGATAAAGC
Statistics
Matches: 154, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
23 1 0.01
24 142 0.92
25 11 0.07
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:20221473 original size:46 final size:46
Alignment explanation
Indices: 20221421--20221596 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
20221411 TGGTTGAGCA
20221421 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
20221467 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * **
20221512 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
20221560 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20221597 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20221577 original size:93 final size:93
Alignment explanation
Indices: 20221418--20221588 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
20221408 GGATGGTTGA
* ****
20221418 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACACCCGAACTCGTTGAGT
20221483 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
20221511 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACACCCGAACTCGTTGAGT
20221576 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
20221589 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:20228128 original size:53 final size:54
Alignment explanation
Indices: 20228015--20228253 Score: 251
Period size: 55 Copynumber: 4.5 Consensus size: 54
20228005 TTACCATTGA
* * * *
20228015 CTTGTCATGGTCTTACTTGGTATCC-T---TT-TGAAACTTACCATTGCCATGT
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGC
* * *
20228064 CTCGACATGGTCTTACATAGTATCCTTGCCTTATG-AACTCACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGC
* ** * * *
20228117 CTTGGCATGGTCTTATGTGGGA-CCTTTGCCTTATAGAAACTTATCAATGCCATGT
1 CTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTTACCAATGCCATGC
*
20228172 CTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTTACCAATCGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTTACCAAT-GCCATGC
*
20228227 CTTGGCATGGTCTTACATGGTATCCTT
1 CTTGACATGGTCTTACATGGTATCCTT
20228254 AAACCCTAAT
Statistics
Matches: 154, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
49 21 0.14
50 1 0.01
52 2 0.01
53 46 0.30
54 11 0.07
55 71 0.46
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGC
Found at i:20232483 original size:27 final size:27
Alignment explanation
Indices: 20232444--20232596 Score: 191
Period size: 27 Copynumber: 5.7 Consensus size: 27
20232434 CCAGATTGAT
*
20232444 AAATGACTATTTTGCCCTCATGAGGTA
1 AAATGACTATTTTGCCCTTATGAGGTA
* *
20232471 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGAGGTA
* *
20232498 AAATGATTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGAGGTA
* * *
20232525 AAATGACTGTTTTGCCCTCAAGAGGTA
1 AAATGACTATTTTGCCCTTATGAGGTA
20232552 AAATGACTATTTTGCCCTTAT-ATGGTA
1 AAATGACTATTTTGCCCTTATGA-GGTA
* * *
20232579 AGATGATTGTTTTGCCCT
1 AAATGACTATTTTGCCCT
20232597 ATGTGATGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 108 0.99
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.39
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGAGGTA
Found at i:20232509 original size:54 final size:54
Alignment explanation
Indices: 20232444--20232601 Score: 221
Period size: 54 Copynumber: 2.9 Consensus size: 54
20232434 CCAGATTGAT
*
20232444 AAATGACTATTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGTGGTA
* * * * *
20232498 AAATGATTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTCAAGAGGTA
1 AAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGTGGTA
* *
20232552 AAATGACTATTTTGCCCTTAT-ATGGTAAGATGATTGTTTTGCCC-TATGTG
1 AAATGACTATTTTGCCCTTATGA-GGTAAAATGACTGTTTTGCCCTTATGTG
20232602 ATGTATATAT
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 3 0.03
54 87 0.97
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (54 bp):
AAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGTGGTA
Found at i:20232579 original size:81 final size:80
Alignment explanation
Indices: 20232444--20232601 Score: 253
Period size: 81 Copynumber: 2.0 Consensus size: 80
20232434 CCAGATTGAT
* * *
20232444 AAATGACTATTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGATTATT
1 AAATGACTATTTTGCCCTCAAGAGGTAAAATGACTATTTTGCCCTTATATGGTAAAATGATTATT
20232509 TTGCCCTTATGTGGTA
66 TTGCCC-TATGTGGTA
* * *
20232525 AAATGACTGTTTTGCCCTCAAGAGGTAAAATGACTATTTTGCCCTTATATGGTAAGATGATTGTT
1 AAATGACTATTTTGCCCTCAAGAGGTAAAATGACTATTTTGCCCTTATATGGTAAAATGATTATT
20232590 TTGCCCTATGTG
66 TTGCCCTATGTG
20232602 ATGTATATAT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
80 6 0.08
81 65 0.92
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (80 bp):
AAATGACTATTTTGCCCTCAAGAGGTAAAATGACTATTTTGCCCTTATATGGTAAAATGATTATT
TTGCCCTATGTGGTA
Found at i:20232696 original size:24 final size:24
Alignment explanation
Indices: 20232668--20232739 Score: 144
Period size: 24 Copynumber: 3.0 Consensus size: 24
20232658 GATACATGTA
20232668 TGATTCTATGATATGACATGACAT
1 TGATTCTATGATATGACATGACAT
20232692 TGATTCTATGATATGACATGACAT
1 TGATTCTATGATATGACATGACAT
20232716 TGATTCTATGATATGACATGACAT
1 TGATTCTATGATATGACATGACAT
20232740 GACCGTATGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (24 bp):
TGATTCTATGATATGACATGACAT
Found at i:20238337 original size:31 final size:31
Alignment explanation
Indices: 20238302--20238365 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
20238292 CTTTTTCATG
20238302 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
20238333 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
20238364 TT
1 TT
20238366 ACGTAAACGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:20238607 original size:24 final size:24
Alignment explanation
Indices: 20238556--20238651 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
20238546 GATTTATCAT
*
20238556 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
20238581 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
*
20238605 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
20238629 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
20238652 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
24 52 0.81
25 12 0.19
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:20238726 original size:20 final size:20
Alignment explanation
Indices: 20238701--20238761 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
20238691 TTATGATTAC
20238701 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
20238721 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
20238741 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
20238761 A
1 A
20238762 CCATATTTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:20238836 original size:25 final size:25
Alignment explanation
Indices: 20238804--20238851 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
20238794 ATACATAAAC
* * *
20238804 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
20238829 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
20238852 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:20239807 original size:41 final size:41
Alignment explanation
Indices: 20239750--20239832 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
20239740 ATCCGTTGTG
20239750 AATCCAACTTAAACGTGCGTAGAAAATAGATCTAAATATTA
1 AATCCAACTTAAACGTGCGTAGAAAATAGATCTAAATATTA
20239791 AATCCAACTTAAACGTGCGTAGAAAATAGATCTAAATATTA
1 AATCCAACTTAAACGTGCGTAGAAAATAGATCTAAATATTA
20239832 A
1 A
20239833 CTCCCGAATC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (41 bp):
AATCCAACTTAAACGTGCGTAGAAAATAGATCTAAATATTA
Found at i:20240880 original size:20 final size:22
Alignment explanation
Indices: 20240842--20240881 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
20240832 TTCAAATACG
*
20240842 ATAATATATATATATTTTCCTA
1 ATAATATATATATAATTTCCTA
20240864 ATAATA-AT-TATAATTTCC
1 ATAATATATATATAATTTCC
20240882 ATAAATCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATATATATAATTTCCTA
Found at i:20244345 original size:27 final size:27
Alignment explanation
Indices: 20244314--20244398 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
20244304 CTAATGGCCG
20244314 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
* *** *
20244341 ATGTGATG-AGGCCTAA-TG---GCCA-
1 ATGTGATGAATGTGAAAGTGTATG-TAT
20244363 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGTATGTAT
20244390 ATGTGATGA
1 ATGTGATGA
20244399 GGCCTAATGG
Statistics
Matches: 41, Mismatches: 10, Indels: 14
0.63 0.15 0.22
Matches are distributed among these distances:
22 9 0.22
23 5 0.12
24 2 0.05
25 2 0.05
26 5 0.12
27 18 0.44
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.33
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTATGTAT
Found at i:20244359 original size:49 final size:49
Alignment explanation
Indices: 20244242--20244562 Score: 552
Period size: 49 Copynumber: 6.5 Consensus size: 49
20244232 TACATATATG
*
20244242 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TGTATA
*
20244293 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
20244342 TGTGATGAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
20244391 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
20244440 TGTGATGAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
20244489 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
20244538 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
20244563 AAAATATATG
Statistics
Matches: 259, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
49 216 0.83
51 43 0.17
ACGTcount: A:0.28, C:0.09, G:0.32, T:0.30
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:20244708 original size:37 final size:37
Alignment explanation
Indices: 20244665--20244779 Score: 221
Period size: 37 Copynumber: 3.1 Consensus size: 37
20244655 GTTCCGGGCG
20244665 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
*
20244702 AGACCCGATGACTATGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
20244739 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
20244776 AGAC
1 AGAC
20244780 TTCTTTTATA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 76 1.00
ACGTcount: A:0.28, C:0.18, G:0.32, T:0.22
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGACCGGGTA
Found at i:20247370 original size:24 final size:26
Alignment explanation
Indices: 20247343--20247390 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20247333 TTAGTTAGAG
20247343 ATTTTT-G-GATCAAAAAAGGAAAGA
1 ATTTTTAGAGATCAAAAAAGGAAAGA
*
20247367 ATTTTTAGAGCTCAAAAAAGGAAA
1 ATTTTTAGAGATCAAAAAAGGAAA
20247391 CATGGCTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 1 0.05
26 14 0.67
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.25
Consensus pattern (26 bp):
ATTTTTAGAGATCAAAAAAGGAAAGA
Found at i:20249171 original size:32 final size:32
Alignment explanation
Indices: 20249135--20249196 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
20249125 CCGTATCTAG
*
20249135 ATAGGTTTGTAGTGGTATTTATTGATGATAAA
1 ATAGGTTTGTAGTGGTATTAATTGATGATAAA
20249167 ATAGGTTTGTAGTGGTATTAATTGATGATA
1 ATAGGTTTGTAGTGGTATTAATTGATGATA
20249197 TTCTGGTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.44
Consensus pattern (32 bp):
ATAGGTTTGTAGTGGTATTAATTGATGATAAA
Found at i:20252439 original size:21 final size:21
Alignment explanation
Indices: 20252415--20252454 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
20252405 TGCCTAGGAC
20252415 ATGAAATGAATTAAATTGAGT
1 ATGAAATGAATTAAATTGAGT
*
20252436 ATGAAATGGATTAAATTGA
1 ATGAAATGAATTAAATTGA
20252455 TGTTAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (21 bp):
ATGAAATGAATTAAATTGAGT
Found at i:20252908 original size:24 final size:24
Alignment explanation
Indices: 20252874--20252924 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
20252864 ACAAACTCAA
*
20252874 CTCTTCATGAGCGTCCTGATATAGG
1 CTCTTCATGAGCGTCCTGACAT-GG
*
20252899 CTCTT-ATGAGCTTCCTGACATGG
1 CTCTTCATGAGCGTCCTGACATGG
20252922 CTC
1 CTC
20252925 GCTTGAACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.21
24 14 0.58
25 5 0.21
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.33
Consensus pattern (24 bp):
CTCTTCATGAGCGTCCTGACATGG
Found at i:20255400 original size:47 final size:47
Alignment explanation
Indices: 20255331--20255427 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
20255321 GATAGGGGAA
*
20255331 AGGCAAGATTATCGAGTAATTGACTCATTTCACTCGTTTTATAGTCG
1 AGGCAAGATTATCGAGTAATTGACTCATTTCACTCGTTTTATACTCG
*
20255378 AGGCAAGATTATCGAGTAATTGACTCATTTCACTGGTTTTATACTCG
1 AGGCAAGATTATCGAGTAATTGACTCATTTCACTCGTTTTATACTCG
20255425 AGG
1 AGG
20255428 TAAGTTCATA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (47 bp):
AGGCAAGATTATCGAGTAATTGACTCATTTCACTCGTTTTATACTCG
Found at i:20271221 original size:28 final size:28
Alignment explanation
Indices: 20271181--20271250 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
20271171 ATAGTAAGTC
*
20271181 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
20271209 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
20271237 CGCACACTTAGTGC
1 CGCACACTTAGTGC
20271251 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:20278203 original size:14 final size:14
Alignment explanation
Indices: 20278184--20278212 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
20278174 TGCATCTATT
20278184 ATTAGAGTAATTTA
1 ATTAGAGTAATTTA
20278198 ATTAGAGTAATTTA
1 ATTAGAGTAATTTA
20278212 A
1 A
20278213 CATATCACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (14 bp):
ATTAGAGTAATTTA
Found at i:20285105 original size:37 final size:37
Alignment explanation
Indices: 20285064--20285137 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
20285054 GAGTAATGAA
*
20285064 ACTTAGTTTACGATTTGATTAAGTCATGGCGTATAAT
1 ACTTAGTTTACGATTTGATTAAGTCATGACGTATAAT
20285101 ACTTAGTTTACGATTTGATTAAGTCATGACGTATAAT
1 ACTTAGTTTACGATTTGATTAAGTCATGACGTATAAT
20285138 CATAACAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.41
Consensus pattern (37 bp):
ACTTAGTTTACGATTTGATTAAGTCATGACGTATAAT
Found at i:20285447 original size:40 final size:40
Alignment explanation
Indices: 20285392--20285595 Score: 274
Period size: 40 Copynumber: 5.1 Consensus size: 40
20285382 GGATGACAAT
*
20285392 GAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCC
*
20285432 GAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCC
*
20285472 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCC
*
20285512 GAAGGCATTGGTGCGAGCT-ACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCCC
* * *
20285552 GAAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCCC
1 GAAGGCATTTGTGCGAGTGA-CTATATCCGGGCTAAGTCCC
20285591 GAAGG
1 GAAGG
20285596 TACTTGGTTT
Statistics
Matches: 154, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 16 0.10
40 136 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCC
Found at i:20285944 original size:90 final size:91
Alignment explanation
Indices: 20285791--20285972 Score: 357
Period size: 90 Copynumber: 2.0 Consensus size: 91
20285781 GTTGGTAATG
20285791 TGAAGTAGGTATGATTTTGAGAATGTGTGTATATGAAATTATCCGTTTAGTCATATGAATGCTAT
1 TGAAGTAGGTATGATTTTGAGAATGTGTGTATATGAAATTATCCGTTTAGTCATATGAATGCTAT
20285856 ACTTC-ATTGTGCCTAATTTCATTGC
66 ACTTCAATTGTGCCTAATTTCATTGC
20285881 TGAAGTAGGTATGATTTTGAGAATGTGTGTATATGAAATTATCCGTTTAGTCATATGAATGCTAT
1 TGAAGTAGGTATGATTTTGAGAATGTGTGTATATGAAATTATCCGTTTAGTCATATGAATGCTAT
20285946 ACTTCAATTGTGCCTAATTTCATTGC
66 ACTTCAATTGTGCCTAATTTCATTGC
20285972 T
1 T
20285973 CAAAACTTAC
Statistics
Matches: 91, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
90 70 0.77
91 21 0.23
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (91 bp):
TGAAGTAGGTATGATTTTGAGAATGTGTGTATATGAAATTATCCGTTTAGTCATATGAATGCTAT
ACTTCAATTGTGCCTAATTTCATTGC
Found at i:20293746 original size:40 final size:39
Alignment explanation
Indices: 20293689--20293870 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 39
20293679 TCGAATGATG
* *
20293689 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
20293729 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
20293769 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
20293807 T-CGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
20293846 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
20293871 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 12
0.84 0.07 0.08
Matches are distributed among these distances:
37 17 0.14
38 32 0.26
39 19 0.15
40 49 0.39
41 8 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:20293831 original size:76 final size:80
Alignment explanation
Indices: 20293689--20293868 Score: 253
Period size: 76 Copynumber: 2.3 Consensus size: 80
20293679 TCGAATGATG
*
20293689 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
20293754 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * **
20293768 TTCCGGGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAAT-CGGGTTAAG-TCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
20293829 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTATA
* *
20293845 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
20293869 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
76 35 0.38
77 20 0.22
78 10 0.11
79 15 0.16
80 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:20299408 original size:77 final size:81
Alignment explanation
Indices: 20299296--20299476 Score: 248
Period size: 77 Copynumber: 2.3 Consensus size: 81
20299286 TACTCGTTCA
* *
20299296 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
20299359 ATTTA-TAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
20299374 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
20299437 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
20299453 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
20299477 CATCATTCGA
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
76 3 0.03
77 45 0.49
78 16 0.18
79 16 0.18
80 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:20299476 original size:40 final size:40
Alignment explanation
Indices: 20299294--20299476 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
20299284 GCTACTCGTT
*
20299294 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
20299334 CAAATGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
20299373 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
20299411 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
20299452 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
20299477 CATCATTCGA
Statistics
Matches: 127, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
37 13 0.10
38 24 0.19
39 19 0.15
40 58 0.46
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:20304444 original size:78 final size:79
Alignment explanation
Indices: 20304306--20304512 Score: 235
Period size: 78 Copynumber: 2.6 Consensus size: 79
20304296 TCGAATGATG
* * * * **
20304306 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATTCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAGATCCGAAGGCATTT
20304371 GTACGAGTTACTA-A
65 GTACGAGTTACTATA
20304385 TTCCGGGCTAAG-CCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGAT-CCGAAGGCATT
*
20304448 TGTGCGAGTTACTATA
64 TGTACGAGTTACTATA
* * * *
20304464 ACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAA
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTA-CTAAATCCGGGTTAA
20304513 ATTTCGAAGG
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 50 0.45
79 34 0.31
80 26 0.23
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGATCCGAAGGCATTTG
TACGAGTTACTATA
Found at i:20304503 original size:40 final size:40
Alignment explanation
Indices: 20304307--20304496 Score: 205
Period size: 40 Copynumber: 4.8 Consensus size: 40
20304297 CGAATGATGT
* *
20304307 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
20304346 TTCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTA-ATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
20304387 CCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
20304424 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
20304465 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
20304497 AGCTATATCC
Statistics
Matches: 128, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
38 24 0.19
39 19 0.15
40 76 0.59
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:20310233 original size:29 final size:29
Alignment explanation
Indices: 20310177--20310247 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
20310167 TAAAAGTGAT
* * * *
20310177 CCTTTGTGGTTATTTTTGTTAAAGGAATT
1 CCTTTGTGGTAATATTTGATAAAGGAATA
*
20310206 TCTTTGTGGCTAATATTTGATAAA-GAATA
1 CCTTTGTGG-TAATATTTGATAAAGGAATA
20310235 CCTTTGTGGTAAT
1 CCTTTGTGGTAAT
20310248 CTATATGAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
28 4 0.11
29 20 0.57
30 11 0.31
ACGTcount: A:0.25, C:0.08, G:0.20, T:0.46
Consensus pattern (29 bp):
CCTTTGTGGTAATATTTGATAAAGGAATA
Found at i:20310411 original size:29 final size:29
Alignment explanation
Indices: 20310378--20310477 Score: 103
Period size: 29 Copynumber: 3.4 Consensus size: 29
20310368 TTCCGTTGCT
* * *
20310378 ATCTCTATGAAAACGAAGACATTGTGGCA
1 ATCTCTGTTAAAAAGAAGACATTGTGGCA
* * *
20310407 ATCTCTGTTAAAAGGAAGCCTTTGTGGCA
1 ATCTCTGTTAAAAAGAAGACATTGTGGCA
* *
20310436 ATCTTTGTTAAAAAGAA-ACATTTGTGGCT
1 ATCTCTGTTAAAAAGAAGACA-TTGTGGCA
*
20310465 ATCTCTTTTAAAA
1 ATCTCTGTTAAAA
20310478 GGGTGCATTT
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
28 1 0.02
29 57 0.98
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (29 bp):
ATCTCTGTTAAAAAGAAGACATTGTGGCA
Found at i:20310486 original size:29 final size:29
Alignment explanation
Indices: 20310399--20310492 Score: 109
Period size: 29 Copynumber: 3.2 Consensus size: 29
20310389 AACGAAGACA
* *
20310399 TTGTGGCAATCTCTGTTAAAAGGAAGCCT
1 TTGTGGCAATCTCTTTTAAAAGGAAGCAT
* *
20310428 TTGTGGCAATCT-TTGTTAAAAAGAAACAT
1 TTGTGGCAATCTCTT-TTAAAAGGAAGCAT
* **
20310457 TTGTGGCTATCTCTTTTAAAAGGGTGCAT
1 TTGTGGCAATCTCTTTTAAAAGGAAGCAT
20310486 TTGTGGC
1 TTGTGGC
20310493 CAACTTAGTT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
28 1 0.02
29 51 0.94
30 2 0.04
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (29 bp):
TTGTGGCAATCTCTTTTAAAAGGAAGCAT
Found at i:20310546 original size:57 final size:58
Alignment explanation
Indices: 20310399--20310548 Score: 162
Period size: 58 Copynumber: 2.6 Consensus size: 58
20310389 AACGAAGACA
* * *
20310399 TTGTGGCAATCTCTGTTAAAAGGAAGCCTTTGTGGCAATCTTTGTTAAAAAGAAACAT
1 TTGTGGCAATCTCTATTAAAAGGATGCCTTTGTGGCAATCTTAGTTAAAAAGAAACAT
* * * * * *
20310457 TTGTGGCTATCTCTTTTAAAAGGGTGCATTTGTGGCCAA-CTTAGTT-AAATG-AATAT
1 TTGTGGCAATCTCTATTAAAAGGATGCCTTTGTGG-CAATCTTAGTTAAAAAGAAACAT
* *
20310513 CTTGTGGAAAACTCTATTAAAAGGATGCCTTTGTGG
1 -TTGTGGCAATCTCTATTAAAAGGATGCCTTTGTGG
20310549 TGAGACTCTA
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
56 4 0.05
57 33 0.43
58 36 0.47
59 3 0.04
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.35
Consensus pattern (58 bp):
TTGTGGCAATCTCTATTAAAAGGATGCCTTTGTGGCAATCTTAGTTAAAAAGAAACAT
Found at i:20315240 original size:22 final size:22
Alignment explanation
Indices: 20315214--20315257 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
20315204 GAAAATAATC
* *
20315214 AAAATTTATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
*
20315236 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
20315258 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:20318083 original size:25 final size:26
Alignment explanation
Indices: 20318055--20318114 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
20318045 TAATTAATAT
*
20318055 AAAATATTAATAATTCAAT-AAATTG
1 AAAATATTAATAATTAAATGAAATTG
* *
20318080 AAAA-ATTAAATGATTAAATGAAATTT
1 AAAATATT-AATAATTAAATGAAATTG
20318106 AAAAT-TTAA
1 AAAATATTAA
20318115 GGGAAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (26 bp):
AAAATATTAATAATTAAATGAAATTG
Found at i:20323872 original size:54 final size:54
Alignment explanation
Indices: 20323808--20323914 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 54
20323798 GAACCACTTT
*
20323808 TGAGTATGTTTTATGATCTCATAAAACCTTATAAGGGACGATGTGAATGATTTC
1 TGAGTATGTTTTAAGATCTCATAAAACCTTATAAGGGACGATGTGAATGATTTC
* ** *
20323862 TGAGTATGTTTTAAGGTCTCATGGATCCTTATAAGGGACGATGTGAATGATTT
1 TGAGTATGTTTTAAGATCTCATAAAACCTTATAAGGGACGATGTGAATGATTT
20323915 GATTTGATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.37
Consensus pattern (54 bp):
TGAGTATGTTTTAAGATCTCATAAAACCTTATAAGGGACGATGTGAATGATTTC
Found at i:20326865 original size:31 final size:31
Alignment explanation
Indices: 20326830--20326897 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
20326820 TTGGGACACG
20326830 CTGTGTGGGTAGGCCGTGTGGTCACACAAGC
1 CTGTGTGGGTAGGCCGTGTGGTCACACAAGC
*
20326861 CTGTGTGGGTAGGCCGTGTGGTCACACACGC
1 CTGTGTGGGTAGGCCGTGTGGTCACACAAGC
20326892 CTGTGT
1 CTGTGT
20326898 CCCTAACCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.13, C:0.24, G:0.38, T:0.25
Consensus pattern (31 bp):
CTGTGTGGGTAGGCCGTGTGGTCACACAAGC
Found at i:20328117 original size:42 final size:42
Alignment explanation
Indices: 20328009--20328127 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 42
20327999 CATACCAATG
* *
20328009 CCATATCCTAGATATGGTCTTACATGTAATCTCATATCGATT
1 CCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATT
* * *
20328051 CCAATAGCCCAGATGTGGTCTTACACG-AAGTCTCATATTGATGT
1 CC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCGAT-T
*
20328095 -CATATCCCAGATATGGTCTTACATGTAATCTCA
1 CCATATCCCAGATATGGTCTTACACGTAATCTCA
20328128 GTAACCCTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
42 30 0.46
43 34 0.52
44 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.34
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATT
Found at i:20328464 original size:16 final size:16
Alignment explanation
Indices: 20328443--20328488 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
20328433 AATTCAACCC
20328443 AAAAATTACATTTTGG
1 AAAAATTACATTTTGG
20328459 AAAAATTACATTTTGG
1 AAAAATTACATTTTGG
*
20328475 GAAAATTACATTTT
1 AAAAATTACATTTT
20328489 ACCCTTAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (16 bp):
AAAAATTACATTTTGG
Found at i:20350472 original size:43 final size:42
Alignment explanation
Indices: 20350398--20350507 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
20350388 GCCATATCCT
* *
20350398 AGATATGGTCTTACATGTAATCT-AGTGTCGATGACAATAGCCC
1 AGATATGGTCTTACAAGTAATCTCA-TATCGATG-CAATAGCCC
* * * *
20350441 AGCTATGGTCTTACAAG-AAGTCTCATATCGATGCCATATCCT
1 AGATATGGTCTTACAAGTAA-TCTCATATCGATGCAATAGCCC
20350483 AGATATGGTCTTACAAGTAATCTCA
1 AGATATGGTCTTACAAGTAATCTCA
20350508 ACAACCCTAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
42 29 0.51
43 27 0.47
44 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (42 bp):
AGATATGGTCTTACAAGTAATCTCATATCGATGCAATAGCCC
Found at i:20350498 original size:42 final size:43
Alignment explanation
Indices: 20350386--20350507 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
20350376 TACCATACCA
* *
20350386 ATGCCATATCCTAGATATGGTCTTACATGTAATCT-AGTGTCG
1 ATGCCATATCCTAGATATGGTCTTACAAGTAATCTCAGTATCG
* * * *
20350428 ATGACAATAGCCCAGCTATGGTCTTACAAG-AAGTCTCA-TATCG
1 ATG-CCATATCCTAGATATGGTCTTACAAGTAA-TCTCAGTATCG
20350471 ATGCCATATCCTAGATATGGTCTTACAAGTAATCTCA
1 ATGCCATATCCTAGATATGGTCTTACAAGTAATCTCA
20350508 ACAACCCTAA
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
42 32 0.48
43 33 0.50
44 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (43 bp):
ATGCCATATCCTAGATATGGTCTTACAAGTAATCTCAGTATCG
Found at i:20353159 original size:21 final size:20
Alignment explanation
Indices: 20353130--20353171 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
20353120 CGAAATGCAA
20353130 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
20353151 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
20353171 T
1 T
20353172 AAACATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.33
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:20354040 original size:22 final size:22
Alignment explanation
Indices: 20354012--20354055 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
20354002 GAAAGTAATC
20354012 AAAATTAATCAAGAATT-ATTAT
1 AAAATTAATCAA-AATTCATTAT
*
20354034 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
20354056 GTTAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:20356106 original size:79 final size:81
Alignment explanation
Indices: 20356005--20356189 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
20355995 ACAACTCGCT
** * *
20356005 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCCTAACCC
* *
20356068 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* * **
20356085 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCCTAACCCGG
* *
20356149 ATATAGTCACTTAGTA
66 ATATAGTAACTTAGCA
20356165 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
20356190 CATCATTCGA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:20356189 original size:40 final size:40
Alignment explanation
Indices: 20355986--20356189 Score: 198
Period size: 40 Copynumber: 5.1 Consensus size: 40
20355976 CGAAATTTAA
** * **
20355986 CCGGATATAACAACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
20356026 CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
20356066 CCGGGTTTAGTAACTTGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * * *
20356105 CCGGATTTATTAACTCGCACGAATGCCTTC-GGATCCTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
20356145 CCGGATATAGTCACTTAGTACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
20356185 CCGGA
1 CCGGA
20356190 CATCATTCGA
Statistics
Matches: 133, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
38 2 0.02
39 31 0.23
40 91 0.68
41 9 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:20358505 original size:53 final size:53
Alignment explanation
Indices: 20358437--20358562 Score: 189
Period size: 53 Copynumber: 2.4 Consensus size: 53
20358427 TTGGTGGACA
* *
20358437 ACCCCATTTTTATTGTCCTAGCAGACTATCCATGTTTAACGTCCTGGCAAACT
1 ACCCTATTTTTATTGTCCTAGCAGACTATCCATGCTTAACGTCCTGGCAAACT
* * *
20358490 ACCCTATTTTTATTGTCCTAGCAGACTATTCATGCTTATCGTCCTGGCAGACT
1 ACCCTATTTTTATTGTCCTAGCAGACTATCCATGCTTAACGTCCTGGCAAACT
* *
20358543 ACCCTGTGTTTATTGTCCTA
1 ACCCTATTTTTATTGTCCTA
20358563 ATAGACTCCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 66 1.00
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.37
Consensus pattern (53 bp):
ACCCTATTTTTATTGTCCTAGCAGACTATCCATGCTTAACGTCCTGGCAAACT
Found at i:20358507 original size:27 final size:26
Alignment explanation
Indices: 20358439--20358562 Score: 113
Period size: 26 Copynumber: 4.7 Consensus size: 26
20358429 GGTGGACAAC
*
20358439 CCCATTTTTATTGTCCTAGCAGACTA
1 CCCATGTTTATTGTCCTAGCAGACTA
* ** * *
20358465 TCCATGTTTAACGTCCTGGCAAACTA
1 CCCATGTTTATTGTCCTAGCAGACTA
*
20358491 CCCTATTTTTATTGTCCTAGCAGACTA
1 CCC-ATGTTTATTGTCCTAGCAGACTA
** * * *
20358518 TTCATGCTTATCGTCCTGGCAGACTA
1 CCCATGTTTATTGTCCTAGCAGACTA
*
20358544 CCCTGTGTTTATTGTCCTA
1 CCC-ATGTTTATTGTCCTA
20358563 ATAGACTCCA
Statistics
Matches: 72, Mismatches: 24, Indels: 3
0.73 0.24 0.03
Matches are distributed among these distances:
26 42 0.58
27 30 0.42
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.38
Consensus pattern (26 bp):
CCCATGTTTATTGTCCTAGCAGACTA
Found at i:20364638 original size:28 final size:28
Alignment explanation
Indices: 20364598--20364654 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
20364588 TCAAGTTTTT
20364598 CCTACCTAACCTTAGCTACTTGATACTA
1 CCTACCTAACCTTAGCTACTTGATACTA
20364626 CCTACCTAACCTTAGCTACTTGATACTA
1 CCTACCTAACCTTAGCTACTTGATACTA
20364654 C
1 C
20364655 ATCTTTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.33, G:0.07, T:0.32
Consensus pattern (28 bp):
CCTACCTAACCTTAGCTACTTGATACTA
Found at i:20369409 original size:28 final size:28
Alignment explanation
Indices: 20369369--20369466 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
20369359 ATAGTAAGTC
* *
20369369 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATTAAACT
20369397 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
20369425 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATTAAACT
20369453 CGCACACTTAGTGC
1 CGCACACTTAGTGC
20369467 CAATCTCATT
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
28 66 0.99
29 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATTAAACT
Found at i:20370032 original size:2 final size:2
Alignment explanation
Indices: 20370025--20370056 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
20370015 GGTATACATT
20370025 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20370057 GCCGAATGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20374734 original size:30 final size:30
Alignment explanation
Indices: 20374698--20374783 Score: 136
Period size: 30 Copynumber: 2.9 Consensus size: 30
20374688 TGAGAAAATG
20374698 ACATTTACATGTCCATACGGTACGTTTACA
1 ACATTTACATGTCCATACGGTACGTTTACA
* **
20374728 ACATTTACATGTCCATACGATACGTTTATG
1 ACATTTACATGTCCATACGGTACGTTTACA
*
20374758 ACATTTACATGTCCATAGGGTACGTT
1 ACATTTACATGTCCATACGGTACGTT
20374784 CACTTATCGA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (30 bp):
ACATTTACATGTCCATACGGTACGTTTACA
Found at i:20383172 original size:40 final size:40
Alignment explanation
Indices: 20383093--20383250 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
20383083 TTCGAATGAT
* * * *
20383093 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
20383133 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
20383173 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
20383213 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
20383251 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:20383271 original size:80 final size:80
Alignment explanation
Indices: 20383093--20383280 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
20383083 TTCGAATGAT
* *
20383093 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
20383158 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
20383173 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
20383234 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
20383254 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
20383281 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:20391242 original size:40 final size:40
Alignment explanation
Indices: 20391163--20391320 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
20391153 TTCGAATGAT
* * * *
20391163 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
20391203 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
20391243 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
20391283 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
20391321 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:20391341 original size:80 final size:80
Alignment explanation
Indices: 20391163--20391350 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
20391153 TTCGAATGAT
* *
20391163 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
20391228 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
20391243 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
20391304 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
20391324 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
20391351 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:20397266 original size:24 final size:22
Alignment explanation
Indices: 20397239--20397296 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
20397229 TTTCAATTTG
*
20397239 TTTTTCATTTTATTTTATTTTTA
1 TTTTTCATTTT-TTTTATCTTTA
20397262 TTTTTGCATTTCTTTTTATCTTTA
1 TTTTT-CATTT-TTTTTATCTTTA
*
20397286 TTTATCATTTT
1 TTTTTCATTTT
20397297 CTTAAAAGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 1 0.03
23 10 0.32
24 19 0.61
25 1 0.03
ACGTcount: A:0.16, C:0.09, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTTCATTTTTTTTATCTTTA
Found at i:20398980 original size:29 final size:29
Alignment explanation
Indices: 20398931--20398987 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
20398921 TTATGATTAA
*
20398931 AATTCTCAACTTTGATGTTCTTTTAGTTG
1 AATTCTCAACTTTGATGTTCTTGTAGTTG
20398960 AATTCTCAA-TATATGAT-TTCTTGTAGTT
1 AATTCTCAACT-T-TGATGTTCTTGTAGTT
20398988 TACTTCGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 1 0.04
29 20 0.80
30 4 0.16
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.51
Consensus pattern (29 bp):
AATTCTCAACTTTGATGTTCTTGTAGTTG
Found at i:20403359 original size:40 final size:40
Alignment explanation
Indices: 20403276--20403538 Score: 370
Period size: 40 Copynumber: 6.6 Consensus size: 40
20403266 CCAAACCAAG
** * *
20403276 TGCCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAA
* * *
20403315 TGCCTTCGGGATTTAGCCCAGTTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
* *
20403355 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
*
20403395 TGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
* *
20403435 TGCCTTCGGGACTTGGCCCGGTTATAGTAACTTGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
*
20403475 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
*
20403515 TGCCTTTGGG-CTTAGCCCGGTTAT
1 TGCCTTCGGGACTTAGCCCGGTTAT
20403539 CAATCCGAAT
Statistics
Matches: 205, Mismatches: 17, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
39 29 0.14
40 176 0.86
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
Found at i:20411469 original size:40 final size:40
Alignment explanation
Indices: 20411388--20411648 Score: 393
Period size: 40 Copynumber: 6.6 Consensus size: 40
20411378 AAACCAAGTA
** * *
20411388 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
20411427 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
20411467 CCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
20411507 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
20411547 CCTTCGGGACTTGGCCCGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
20411587 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
20411627 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
20411649 CAATCCGAAT
Statistics
Matches: 206, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 26 0.13
40 180 0.87
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:20417056 original size:39 final size:39
Alignment explanation
Indices: 20417002--20417145 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
20416992 GAATGTTCGA
20417002 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* ** *
20417041 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGTGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
20417080 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
20417119 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
20417146 CTTTGTGCGG
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 84 0.90
40 9 0.10
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:20425051 original size:12 final size:12
Alignment explanation
Indices: 20425034--20425066 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
20425024 GGACAAAAGT
20425034 AGGCCATTTGTA
1 AGGCCATTTGTA
20425046 AGGCCATTTGTA
1 AGGCCATTTGTA
20425058 AGGCCATTT
1 AGGCCATTT
20425067 TGCCACCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (12 bp):
AGGCCATTTGTA
Found at i:20425945 original size:23 final size:22
Alignment explanation
Indices: 20425919--20425994 Score: 82
Period size: 23 Copynumber: 3.4 Consensus size: 22
20425909 CTGATGAACA
20425919 GTAAGCTCTACTGAGCTGAAACG
1 GTAAGCTCTA-TGAGCTGAAACG
* *
20425942 GTAAGCTCTTTCGAGCTG-AACA
1 GTAAGCTCTAT-GAGCTGAAACG
* *
20425964 GTATGCTCATATGAGCTGAAATG
1 GTAAGCTC-TATGAGCTGAAACG
20425987 GTAAGCTC
1 GTAAGCTC
20425995 CAATGAGATA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
22 17 0.40
23 26 0.60
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (22 bp):
GTAAGCTCTATGAGCTGAAACG
Found at i:20425979 original size:22 final size:21
Alignment explanation
Indices: 20425913--20425983 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 21
20425903 CTTGAACTGA
20425913 TGAACAGTAAGCTCTACTGAGC
1 TGAACAGTAAGCTCTA-TGAGC
* *
20425935 TGAAACGGTAAGCTCTTTCGAGC
1 TG-AACAGTAAGCTCTAT-GAGC
*
20425958 TGAACAGTATGCTCATATGAGC
1 TGAACAGTAAGCTC-TATGAGC
20425980 TGAA
1 TGAA
20425984 ATGGTAAGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
22 21 0.51
23 20 0.49
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (21 bp):
TGAACAGTAAGCTCTATGAGC
Found at i:20429987 original size:43 final size:43
Alignment explanation
Indices: 20429929--20430076 Score: 126
Period size: 42 Copynumber: 3.4 Consensus size: 43
20429919 CAATGCCAAC
*
20429929 GTCCCAGAC-GTGGTCTTACCTGTAATTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACCTGTAATTCAATATCGATGCCTAT
* * *
20429972 GTCCCAGACAGGGTCTTACAC-G-AAATC-ATATACGATACCAAT
1 GTCCCAGACAGGGTCTTAC-CTGTAATTCAATAT-CGATGCCTAT
* * * *
20430014 GTCCCAGACATGGTCTTACATGTAAATCTCAA-ATCGAAGCCTGT
1 GTCCCAGACAGGGTCTTACCTGT-AAT-TCAATATCGATGCCTAT
* *
20430058 GTCCCAGATACGGTCTTAC
1 GTCCCAGACAGGGTCTTAC
20430077 ACGATATTTC
Statistics
Matches: 84, Mismatches: 13, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
41 4 0.05
42 30 0.36
43 18 0.21
44 27 0.32
45 4 0.05
46 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACCTGTAATTCAATATCGATGCCTAT
Found at i:20430077 original size:86 final size:85
Alignment explanation
Indices: 20429924--20430080 Score: 226
Period size: 86 Copynumber: 1.8 Consensus size: 85
20429914 AAGTACAATG
* * * *
20429924 CCAACGTCCCAGACGTGGTCTTACCTGTAATTCAATATCGATGCCTCTGTCCCAGACAGGGTCTT
1 CCAACGTCCCAGACATGGTCTTACATGTAATTCAATATCGAAGCCTCTGTCCCAGACACGGTCTT
20429989 ACACGAAATCATATACGATA
66 ACACGAAATCATATACGATA
* * *
20430009 CCAATGTCCCAGACATGGTCTTACATGTAAATCTCAA-ATCGAAGCCTGTGTCCCAGATACGGTC
1 CCAACGTCCCAGACATGGTCTTACATGT-AAT-TCAATATCGAAGCCTCTGTCCCAGACACGGTC
20430073 TTACACGA
64 TTACACGA
20430081 TATTTCAGAT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
85 25 0.40
86 34 0.54
87 4 0.06
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (85 bp):
CCAACGTCCCAGACATGGTCTTACATGTAATTCAATATCGAAGCCTCTGTCCCAGACACGGTCTT
ACACGAAATCATATACGATA
Found at i:20430194 original size:16 final size:17
Alignment explanation
Indices: 20430173--20430205 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
20430163 AAGGCCATCC
*
20430173 AATATAGAT-TATAACA
1 AATATACATATATAACA
20430189 AATATACATATATAACA
1 AATATACATATATAACA
20430206 TTTAGTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (17 bp):
AATATACATATATAACA
Found at i:20435561 original size:15 final size:15
Alignment explanation
Indices: 20435541--20435596 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
20435531 GTATCTTGGG
20435541 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
20435556 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
20435571 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
20435586 TTTCTTTATTC
1 TTTCTTTATTC
20435597 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:20436910 original size:40 final size:40
Alignment explanation
Indices: 20436865--20436994 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
20436855 CGGAATACAA
20436865 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
20436905 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
20436945 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
20436985 CCGGATATAA
1 CCGGATATAA
20436995 TTTCCAGCAA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:20441935 original size:17 final size:18
Alignment explanation
Indices: 20441893--20441941 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
20441883 AGTTGAAAAG
20441893 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
20441912 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
20441929 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
20441942 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:20442826 original size:40 final size:40
Alignment explanation
Indices: 20442760--20442910 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
20442750 AAATTGAATG
* * *
20442760 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
20442799 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
20442839 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
20442879 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
20442911 ACTTGATTAT
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
39 16 0.17
40 77 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:20442924 original size:40 final size:40
Alignment explanation
Indices: 20442796--20442926 Score: 167
Period size: 40 Copynumber: 3.3 Consensus size: 40
20442786 TATGCTGGAA
* * * *
20442796 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
* *
20442836 GTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
20442876 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
20442916 ATTATATCCGG
1 ATTATATCCGG
20442927 TTATATTCCG
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:20449887 original size:39 final size:40
Alignment explanation
Indices: 20449833--20450050 Score: 331
Period size: 39 Copynumber: 5.6 Consensus size: 40
20449823 AACCCAAGTA
* *
20449833 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
20449872 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA-G
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
**
20449911 CCTTCGGGACTTAGCCCGGATATAGTCTCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
20449951 CCTTC-GGACTTAGCCCGGATATAGTC-ATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
20449989 CCTTCGGGACTTAGCCCGGATATAGCCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
20450029 CCTTC-GGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
20450051 CATTCGAATA
Statistics
Matches: 166, Mismatches: 8, Indels: 10
0.90 0.04 0.05
Matches are distributed among these distances:
38 16 0.10
39 106 0.64
40 41 0.25
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:20453730 original size:42 final size:42
Alignment explanation
Indices: 20453669--20453788 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 42
20453659 AGGTTAGTTG
* * *
20453669 AGATTACGTGCAAGACCATATTTGGGATATGGCATCGATATA
1 AGATTTCGTGTAAAACCATATTTGGGATATGGCATCGATATA
* *
20453711 AGATTTCGTGTAAAACCATAGTT-GGACTATTGGCATCGATATG
1 AGATTTCGTGTAAAACCATATTTGGGA-TA-TGGCATCGATATA
* * *
20453754 AGATCTCATGTAATACCAT-TTCTGGGATATGGCAT
1 AGATTTCGTGTAAAACCATATT-TGGGATATGGCAT
20453789 TGCTATGGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
41 3 0.05
42 28 0.43
43 31 0.48
44 3 0.05
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (42 bp):
AGATTTCGTGTAAAACCATATTTGGGATATGGCATCGATATA
Found at i:20456643 original size:40 final size:40
Alignment explanation
Indices: 20456598--20456727 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
20456588 CGGAATATAA
20456598 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
20456638 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
20456678 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
20456718 CCGGATATAA
1 CCGGATATAA
20456728 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:20456742 original size:40 final size:39
Alignment explanation
Indices: 20456614--20456764 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
20456604 ATAACCATGT
* * *
20456614 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
20456654 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
20456694 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
20456733 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
20456765 CATTCAATTC
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:20456748 original size:80 final size:79
Alignment explanation
Indices: 20456598--20456764 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
20456588 CGGAATATAA
*
20456598 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
20456663 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
20456678 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
20456740 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
20456757 CCGGATAT
1 CCGGATAT
20456765 CATTCAATTC
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:20463349 original size:40 final size:39
Alignment explanation
Indices: 20463237--20463388 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 39
20463227 TATAACCATG
*
20463237 TGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACT
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATGACT
* *
20463277 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCT-ACT
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATATA-ATGACT
* ** *
20463317 TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 TGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATGACT
* * *
20463357 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 TGCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
20463389 CATTCAATTC
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
39 16 0.17
40 79 0.82
41 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.28
Consensus pattern (39 bp):
TGCACAATGCCTTCGGGTCTTAGCCCGGATATAATGACT
Done.