Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 68 of 292
Found at i:20463372 original size:80 final size:79
Alignment explanation
Indices: 20463237--20463388 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 79
20463227 TATAACCATG
*
20463237 TGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 TGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGC
20463302 CCGGATATAGCTACT
65 CCGGATATAGCTACT
* * ** * *
20463317 TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAG
1 TGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAG
20463380 CCCGGATAT
64 CCCGGATAT
20463389 CATTCAATTC
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 46 0.73
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.28
Consensus pattern (79 bp):
TGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCC
CGGATATAGCTACT
Found at i:20466618 original size:2 final size:2
Alignment explanation
Indices: 20466611--20466639 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
20466601 ATGACTAGAG
20466611 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20466640 GTGTGTGTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20467219 original size:40 final size:40
Alignment explanation
Indices: 20467164--20467465 Score: 482
Period size: 40 Copynumber: 7.6 Consensus size: 40
20467154 TATTTGAATG
20467164 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
20467204 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
20467244 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
20467284 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * **
20467324 ATATTCGGGCTAAGTCCCGAAGGCCTTTGTGCTAGAGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
20467364 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCAATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
20467404 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
20467444 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
20467466 TACTTGGGTT
Statistics
Matches: 243, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.05
40 226 0.93
41 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:20474911 original size:2 final size:2
Alignment explanation
Indices: 20474904--20474934 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
20474894 ATGACTAGAG
20474904 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
20474935 GCGTATGGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20475506 original size:40 final size:40
Alignment explanation
Indices: 20475451--20475634 Score: 257
Period size: 40 Copynumber: 4.6 Consensus size: 40
20475441 TATTCGAATG
*
20475451 ATATCCGGGTTAAGTCCCGAAGGTATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTATTGACT
* **
20475491 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGAGACT
1 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTATTGACT
20475531 ATATCCGGGCTAAGTCCCGAAGGCT-TTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGG-TATTTGTGCTATTGACT
* * *
20475571 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTA-TTGACT
*
20475611 ATATCC-GGCTAAATCCCGAAGGTA
1 ATATCCGGGCTAAGTCCCGAAGGTA
20475635 CTTGGGTTTG
Statistics
Matches: 128, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 15 0.12
40 110 0.86
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTATTGACT
Found at i:20475584 original size:80 final size:80
Alignment explanation
Indices: 20475451--20475634 Score: 284
Period size: 80 Copynumber: 2.3 Consensus size: 80
20475441 TATTCGAATG
* *
20475451 ATATCCGGGTTAAGTCCCGAAGGTATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
*
20475516 TTTGTGCTAG-AGACT
66 TTTGTGCGAGTAG-CT
20475531 ATATCCGGGCTAAGTCCCGAAGGCT-TTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGG-TATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGC
*
20475595 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTAGCT
*
20475611 ATATCC-GGCTAAATCCCGAAGGTA
1 ATATCCGGGCTAAGTCCCGAAGGTA
20475635 CTTGGGTTTG
Statistics
Matches: 96, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
78 1 0.01
79 15 0.16
80 78 0.81
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTAGCT
Found at i:20480422 original size:13 final size:13
Alignment explanation
Indices: 20480404--20480428 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20480394 ATATTCTGCC
20480404 TAACATATATAAT
1 TAACATATATAAT
20480417 TAACATATATAA
1 TAACATATATAA
20480429 AAAAATATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
TAACATATATAAT
Found at i:20482040 original size:31 final size:31
Alignment explanation
Indices: 20481997--20482076 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
20481987 TCAATCTCAG
20481997 CATAT-ACTGGGCCGAAGCCTTTACATTATC
1 CATATCACTGGGCCGAAGCCTTTACATTATC
* * *
20482027 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATC
20482058 CATATCACTGGGCCGAAGC
1 CATATCACTGGGCCGAAGC
20482077 TTTTTACTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 4 0.09
31 41 0.91
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATC
Found at i:20482339 original size:26 final size:24
Alignment explanation
Indices: 20482274--20482396 Score: 122
Period size: 26 Copynumber: 4.9 Consensus size: 24
20482264 GCTTTATCAT
**
20482274 ATAACTGGAGGCCTAGCCTCTTTT-G
1 ATAACTGG-GGCAAAGCC-CTTTTCG
* *
20482299 ATAACTGGGGTAAAAGCCCTTTTTG
1 ATAACTGGGG-CAAAGCCCTTTTCG
20482324 ATAAACTGGGGCAAAAGCCCTTTTCG
1 AT-AACTGGGGC-AAAGCCCTTTTCG
*
20482350 GTAAACTGGGGCAAAGCCCTTTTCG
1 AT-AACTGGGGCAAAGCCCTTTTCG
* *
20482375 GTAACTGGGGCATAGCCCTTTT
1 ATAACTGGGGCAAAGCCCTTTT
20482397 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
24 26 0.30
25 30 0.34
26 31 0.36
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCCTTTTCG
Found at i:20482557 original size:25 final size:25
Alignment explanation
Indices: 20482529--20482576 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
20482519 ATAATTAAAC
* *
20482529 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
20482554 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
20482577 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:20484773 original size:42 final size:42
Alignment explanation
Indices: 20484643--20484790 Score: 140
Period size: 43 Copynumber: 3.5 Consensus size: 42
20484633 AATGTCAACA
* * * * * *
20484643 TCCCATACGTGGTCTTACATAC-AATCACATATCGATGTCACTA
1 TCCCAAACATGGTCTTAC--ACGAATCAAATATCGATGCCAATG
* * *
20484686 TCCCAAACAGGGTCTTACACGAATCAAATA-CAATTCCAATG
1 TCCCAAACATGGTCTTACACGAATCAAATATCGATGCCAATG
* *
20484727 TCCC-AACATGGTCTTACAGGTAATCATATATCGATGCCAATG
1 TCCCAAACATGGTCTTACACG-AATCAAATATCGATGCCAATG
*
20484769 TCCCAAACGTGGTCTTACACGA
1 TCCCAAACATGGTCTTACACGA
20484791 GAACAGATAT
Statistics
Matches: 85, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
40 14 0.16
41 20 0.24
42 22 0.26
43 29 0.34
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (42 bp):
TCCCAAACATGGTCTTACACGAATCAAATATCGATGCCAATG
Found at i:20485339 original size:15 final size:15
Alignment explanation
Indices: 20485316--20485345 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
20485306 TCAAAAATTC
20485316 TAATACAAAACATAT
1 TAATACAAAACATAT
*
20485331 TAATCCAAAACATAT
1 TAATACAAAACATAT
20485346 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:20489069 original size:48 final size:48
Alignment explanation
Indices: 20488863--20489171 Score: 157
Period size: 46 Copynumber: 6.6 Consensus size: 48
20488853 TGATATGTGT
* * * *
20488863 GCTACTGTAAGACATGTCTGGGACATGCATCAGCCACAGC-AT-GA-AA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCATCCTC-GCAATATACAA
* * * **
20488909 GCCAGTGTAAGACATGTCTGCGACATGCATCGGT-CTCG-AGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-ATCCTCGCA-ATATACAA
* * * * *
20488957 GCTAGTGTAAGACATGTTTGCGACATG---CAT--TGGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCATCCTCGCAAT-ATAC-A-A
20489003 GCTAGTGTAAGACATGTCTGGGACATGCATCATCCTCGCAATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCATCCTCGCAATATACAA
* ** ** * * *
20489051 GCTAGTGTAAGACCTGTCTAAGACATGGCAT-AAGCTTG--ATGT-C-T
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCATCCTCGCAATATACAA
* * *
20489095 G-TCAGTGTAAGACTTGTCTGGGACATGGCATCAGCCTCGCTATATGA-AA
1 GCT-AGTGTAAGACATGTCTGGGACAT-GCATCATCCTCGCAATAT-ACAA
* *
20489144 GCCAGTGTAAGACCATGTCTAGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
20489172 GCGTCGGCAT
Statistics
Matches: 199, Mismatches: 40, Indels: 45
0.70 0.14 0.16
Matches are distributed among these distances:
43 4 0.02
44 29 0.15
45 8 0.04
46 61 0.31
47 3 0.02
48 55 0.28
49 19 0.10
50 15 0.08
51 5 0.03
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCATCCTCGCAATATACAA
Found at i:20489076 original size:94 final size:90
Alignment explanation
Indices: 20488911--20489171 Score: 240
Period size: 94 Copynumber: 2.8 Consensus size: 90
20488901 GCATGAAAGC
* * * *
20488911 CAGTGTAAGACATGTCTGCGACATGCATCGGT-CTCG-AGATATTTAAGCTAGTGTAAGACATGT
1 CAGTGTAAGACATGTCTGGGACATGCATC-ATCCTCGCA-ATA-TAAAGCTAGTGTAAGACCTGT
* ** **
20488974 TTGCGACATGCATTGGCATTGA-GACGAGAG
63 CTAAGACATGCATAAGC-TTGATGAC-AG-G
20489004 CTAGTGTAAGACATGTCTGGGACATGCATCATCCTCGCAATATACAAGCTAGTGTAAGACCTGTC
1 C-AGTGTAAGACATGTCTGGGACATGCATCATCCTCGCAATATA-AAGCTAGTGTAAGACCTGTC
* * *
20489069 TAAGACATGGCATAAGCTTGATGTCTGT
64 TAAGACAT-GCATAAGCTTGATGACAGG
* * * *
20489097 CAGTGTAAGACTTGTCTGGGACATGGCATCAGCCTCGCTATATGAAAGCCAGTGTAAGACCATGT
1 CAGTGTAAGACATGTCTGGGACAT-GCATCATCCTCGCAATAT-AAAGCTAGTGTAAGACC-TGT
*
20489162 CTAGGACATG
63 CTAAGACATG
20489172 GCGTCGGCAT
Statistics
Matches: 142, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
92 22 0.15
93 36 0.25
94 75 0.53
95 9 0.06
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (90 bp):
CAGTGTAAGACATGTCTGGGACATGCATCATCCTCGCAATATAAAGCTAGTGTAAGACCTGTCTA
AGACATGCATAAGCTTGATGACAGG
Found at i:20499596 original size:39 final size:39
Alignment explanation
Indices: 20499542--20499732 Score: 319
Period size: 39 Copynumber: 4.9 Consensus size: 39
20499532 AATGTTCGAG
20499542 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
20499581 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
20499620 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
20499659 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
20499698 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
20499733 GGTTACCATA
Statistics
Matches: 143, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 126 0.88
40 17 0.12
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.21
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:20517846 original size:4 final size:4
Alignment explanation
Indices: 20517837--20517861 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
20517827 TTACTACTAA
20517837 TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG T
20517862 TTTTTTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:20519065 original size:13 final size:13
Alignment explanation
Indices: 20519047--20519071 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20519037 TAAAAGTGAA
20519047 AAAAAATAAAAAT
1 AAAAAATAAAAAT
20519060 AAAAAATAAAAA
1 AAAAAATAAAAA
20519072 GTCTTTAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:20525927 original size:16 final size:16
Alignment explanation
Indices: 20525886--20525927 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
20525876 GCCACCCTTT
20525886 TTCCTCCTTTCTTTTTC
1 TTCC-CCTTTCTTTTTC
**
20525903 TTCATCTTTCTTTTTC
1 TTCCCCTTTCTTTTTC
20525919 TTCCCCTTT
1 TTCCCCTTT
20525928 TTTACCATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.64
Consensus pattern (16 bp):
TTCCCCTTTCTTTTTC
Found at i:20526242 original size:19 final size:20
Alignment explanation
Indices: 20526169--20526252 Score: 68
Period size: 19 Copynumber: 4.3 Consensus size: 20
20526159 TTTTACTTAT
* *
20526169 TTATTTCATTCTTATTAGTA
1 TTATTTCATTATTATTATTA
*
20526189 TTATTTC-TTATTATTCTTA
1 TTATTTCATTATTATTATTA
20526208 TTTATTT-ATTTATTATT-TTA
1 -TTATTTCA-TTATTATTATTA
* * *
20526228 CTATTTCATTCTTATTGTT-
1 TTATTTCATTATTATTATTA
20526247 TTATTT
1 TTATTT
20526253 TGTTTTAGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
19 26 0.49
20 19 0.36
21 8 0.15
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.68
Consensus pattern (20 bp):
TTATTTCATTATTATTATTA
Found at i:20526243 original size:40 final size:40
Alignment explanation
Indices: 20526164--20526243 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 40
20526154 TCCATTTTTA
* *
20526164 CTTATTTATTTCATTCTTATTAGTATTATTTCTTATTATT
1 CTTATTTATTTCATTATTATTAGTACTATTTCTTATTATT
* *
20526204 CTTATTTATTT-ATTTATTATT-TTACTATTTCATTCTTATT
1 CTTATTTATTTCA-TTATTATTAGTACTATTTC-TTATTATT
20526244 GTTTTATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
39 9 0.26
40 25 0.74
ACGTcount: A:0.23, C:0.10, G:0.01, T:0.66
Consensus pattern (40 bp):
CTTATTTATTTCATTATTATTAGTACTATTTCTTATTATT
Found at i:20529910 original size:30 final size:30
Alignment explanation
Indices: 20529876--20529968 Score: 168
Period size: 30 Copynumber: 3.1 Consensus size: 30
20529866 TGGGTAAGCC
20529876 ACATGCCCGTGTGTGACACACGGGTATACT
1 ACATGCCCGTGTGTGACACACGGGTATACT
20529906 ACATGCCCGTGTGTGACACACGGGTATACT
1 ACATGCCCGTGTGTGACACACGGGTATACT
* *
20529936 ACACGCCCGTGTGTGACACATGGGTATACT
1 ACATGCCCGTGTGTGACACACGGGTATACT
20529966 ACA
1 ACA
20529969 CACCGTGTGT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (30 bp):
ACATGCCCGTGTGTGACACACGGGTATACT
Found at i:20529969 original size:30 final size:30
Alignment explanation
Indices: 20529880--20529978 Score: 164
Period size: 30 Copynumber: 3.3 Consensus size: 30
20529870 TAAGCCACAT
*
20529880 GCCCGTGTGTGACACACGGGTATACTACAT
1 GCCCGTGTGTGACACACGGGTATACTACAC
20529910 GCCCGTGTGTGACACACGGGTATACTACAC
1 GCCCGTGTGTGACACACGGGTATACTACAC
*
20529940 GCCCGTGTGTGACACATGGGTATACTACAC
1 GCCCGTGTGTGACACACGGGTATACTACAC
*
20529970 -ACCGTGTGT
1 GCCCGTGTGT
20529979 CATGGTCGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
29 8 0.12
30 58 0.88
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (30 bp):
GCCCGTGTGTGACACACGGGTATACTACAC
Found at i:20542278 original size:30 final size:28
Alignment explanation
Indices: 20542242--20542342 Score: 121
Period size: 28 Copynumber: 3.5 Consensus size: 28
20542232 GACAAAATTG
* *
20542242 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATACA
* *
20542272 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATACA
* *
20542300 GCACTAAGTGTGCGAGCTGAATGTATACA
1 GCACTAAGTGTGCGAGTTTAAT-TATACA
20542329 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
20542343 GATTCACTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 25 0.40
29 19 0.31
30 18 0.29
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATACA
Found at i:20546874 original size:46 final size:46
Alignment explanation
Indices: 20546824--20546996 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
20546814 TGGTTGAGCA
20546824 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
20546870 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
20546915 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
20546963 -CCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
20546997 GGGGCAGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 58 0.55
47 29 0.28
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20546980 original size:93 final size:93
Alignment explanation
Indices: 20546821--20546991 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
20546811 GGATGGTTGA
* *
20546821 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAGT
20546886 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
20546914 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGTCC-GAACTCGTTGAG
*
20546978 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
20546992 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:20557596 original size:50 final size:50
Alignment explanation
Indices: 20557477--20557772 Score: 265
Period size: 50 Copynumber: 5.9 Consensus size: 50
20557467 ATTGTGAGAA
* * *** * * *
20557477 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAAGT
** * * *
20557529 CATGTGTGTAGTACTAAGTGCAGGCTACGACGTGTACCAAATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAAGT
* * * * *
20557579 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACGC-GACAACTTCAAG-
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGA-TAGTT-AAGT
* * *
20557630 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAAGT
* * ** * *
20557680 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGGATCGTT-TGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAAGT
* *
20557729 CACATGTTTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
20557773 CTTCGGTTAC
Statistics
Matches: 199, Mismatches: 40, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
49 42 0.21
50 82 0.41
51 38 0.19
52 37 0.19
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAAGT
Found at i:20557770 original size:99 final size:99
Alignment explanation
Indices: 20557533--20557772 Score: 279
Period size: 101 Copynumber: 2.4 Consensus size: 99
20557523 TTAGGTCATG
* * * *
20557533 TGTGTAGTACTAAGTGCAGGCTACGACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAAGTCACATGTGTAGTACTAAGT
* * *
20557598 GCAGGCTACTATGCGTACGCGACAACTTCAAGCACG
66 GCAAGCTACTACGCGTACGCGAC-ACTT-AAGCACA
* * *
20557634 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAAGTCACATGTGTAGTACTAAGT
* * *
20557699 GCAAGCTACTACGTGTACTG-GATC-GTT-TGTCACA
66 GCAAGCTACTACGCGTAC-GCGA-CACTTAAG-CACA
* *
20557733 TGTTTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
20557773 CTTCGGTTAC
Statistics
Matches: 119, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
98 1 0.01
99 39 0.33
100 2 0.02
101 75 0.63
102 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAAGTCACATGTGTAGTACTAAGT
GCAAGCTACTACGCGTACGCGACACTTAAGCACA
Found at i:20557801 original size:150 final size:152
Alignment explanation
Indices: 20557484--20557804 Score: 344
Period size: 150 Copynumber: 2.1 Consensus size: 152
20557474 GAACACATGT
* * * * *
20557484 GTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTCATGTGTGTAGTACTAAGTG
1 GTAGTAATATGTGCAGGCTACTACGTGTATAAAATGG-TTTAAGTCACGTGTGTAGTACTAAGTG
* * *
20557549 CAGGCTACGACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
65 CAAGCTACGACGTGTACCAAATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGT
** *
20557614 ACGCGACAACTTCAAGCACGTGT
130 ACGCGACAACTTCAAGCACAAGG
* * * *
20557637 GTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAAGTCACGTGTGTAGTACTAAGTGC
1 GTAGTAATATGTGCAGGCTACTACGTGTATAAAATGGTTTAAGTCACGTGTGTAGTACTAAGTGC
* *** * * *
20557701 AAGCTACTACGTGTACTGGATCGTT-TGTCACATGTTTAGTACTAAGTGCAGGCTACTACGCGTA
66 AAGCTACGACGTGTACCAAATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA
* * * *
20557765 C-CAGATAGCTTC-GGTTACAAGG
131 CGC-GACAACTTCAAG-CACAAGG
*
20557787 GTGGTAATATGTGCAGGC
1 GTAGTAATATGTGCAGGC
20557805 AACCGTGTAC
Statistics
Matches: 139, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
149 2 0.01
150 61 0.44
151 44 0.32
153 32 0.23
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (152 bp):
GTAGTAATATGTGCAGGCTACTACGTGTATAAAATGGTTTAAGTCACGTGTGTAGTACTAAGTGC
AAGCTACGACGTGTACCAAATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA
CGCGACAACTTCAAGCACAAGG
Found at i:20559841 original size:67 final size:67
Alignment explanation
Indices: 20559750--20559911 Score: 175
Period size: 67 Copynumber: 2.4 Consensus size: 67
20559740 TTCACCTATC
* * * ** *
20559750 GCCATAGCCGAGCTATGGTCTTACACAGTCTG-AA-CCTATGTTTAACGTCCTGGTGGACTCTAT
1 GCCATA-CTGAGCTATGGTCTTACAC-CT-TGTAACCCCATGTTTAACGTCCTAATAGACTCTAT
20559813 TGGTT
63 TGGTT
*
20559818 GCCATACTGAGCTATGGTCTTACACCTTGTAACCCCATGTTTAATGTCCTAATAGACTCTATTGG
1 GCCATACTGAGCTATGGTCTTACACCTTGTAACCCCATGTTTAACGTCCTAATAGACTCTATTGG
20559883 TT
66 TT
* *
20559885 TCCATAGTCGAGCTATATGGTCTTACA
1 GCCATACT-GAGC--TATGGTCTTACA
20559912 TATTAAACCT
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
65 2 0.03
66 3 0.04
67 53 0.66
68 10 0.12
70 12 0.15
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (67 bp):
GCCATACTGAGCTATGGTCTTACACCTTGTAACCCCATGTTTAACGTCCTAATAGACTCTATTGG
TT
Found at i:20560855 original size:2 final size:2
Alignment explanation
Indices: 20560848--20560899 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
20560838 CTCACTACTC
20560848 AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20560889 AT AT AT AT AT A
1 AT AT AT AT AT A
20560900 CAATCAAAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20561805 original size:21 final size:22
Alignment explanation
Indices: 20561764--20561806 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
20561754 TAGTCAATGC
20561764 GGAATTAAAATTAACTTTTTAA
1 GGAATTAAAATTAACTTTTTAA
20561786 GGAATTAAAATTAA-TTTTTAA
1 GGAATTAAAATTAACTTTTTAA
20561807 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (22 bp):
GGAATTAAAATTAACTTTTTAA
Found at i:20568492 original size:19 final size:19
Alignment explanation
Indices: 20568470--20568547 Score: 65
Period size: 20 Copynumber: 4.1 Consensus size: 19
20568460 TTTTAAAAAA
20568470 TATAAAT-TTTTGAAATTTT
1 TATAAATATTTT-AAATTTT
20568489 TATAAATATTTTAAA-TTT
1 TATAAATATTTTAAATTTT
*
20568507 TAAAAATTAATTTT-AATTTT
1 TATAAA-T-ATTTTAAATTTT
*
20568527 TGA-AAATTATTTTACATTTT
1 T-ATAAA-TATTTTAAATTTT
20568547 T
1 T
20568548 TATTGAGGGA
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
18 8 0.16
19 18 0.35
20 24 0.47
21 1 0.02
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (19 bp):
TATAAATATTTTAAATTTT
Found at i:20568519 original size:20 final size:19
Alignment explanation
Indices: 20568473--20568546 Score: 71
Period size: 19 Copynumber: 3.9 Consensus size: 19
20568463 TAAAAAATAT
* *
20568473 AAATT-TTTGAAATTTTTAT
1 AAATTATTTTAAA-TTTTAA
20568492 AAA-TATTTTAAATTTTAA
1 AAATTATTTTAAATTTTAA
* *
20568510 AAATTAATTTTAATTTTTGA
1 AAATT-ATTTTAAATTTTAA
*
20568530 AAATTATTTTACATTTT
1 AAATTATTTTAAATTTT
20568547 TTATTGAGGG
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
18 9 0.20
19 20 0.43
20 17 0.37
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (19 bp):
AAATTATTTTAAATTTTAA
Found at i:20568547 original size:20 final size:19
Alignment explanation
Indices: 20568483--20568547 Score: 78
Period size: 20 Copynumber: 3.4 Consensus size: 19
20568473 AAATTTTTGA
*
20568483 AATTTTTATAAA-TATTTT
1 AATTTTTAAAAATTATTTT
*
20568501 AAATTTTAAAAATTAATTTT
1 AATTTTTAAAAATT-ATTTT
*
20568521 AATTTTTGAAAATTATTTT
1 AATTTTTAAAAATTATTTT
20568540 ACATTTTT
1 A-ATTTTT
20568548 TATTGAGGGA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
18 10 0.25
19 7 0.17
20 23 0.57
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
AATTTTTAAAAATTATTTT
Found at i:20569485 original size:20 final size:20
Alignment explanation
Indices: 20569462--20569499 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
20569452 AAATAATGAA
20569462 AAAAATAACAAAAAAAAGTC
1 AAAAATAACAAAAAAAAGTC
*
20569482 AAAAATAACAAGAAAAAG
1 AAAAATAACAAAAAAAAG
20569500 CAACAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.76, C:0.08, G:0.08, T:0.08
Consensus pattern (20 bp):
AAAAATAACAAAAAAAAGTC
Found at i:20570160 original size:19 final size:17
Alignment explanation
Indices: 20570130--20570168 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
20570120 ATATTTACTA
*
20570130 AAATATTATAAATTTAT
1 AAATATTATAAAATTAT
20570147 AAATCATTATTAAAATTAT
1 AAAT-ATTA-TAAAATTAT
20570166 AAA
1 AAA
20570169 AAATATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 4 0.21
19 11 0.58
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATATTATAAAATTAT
Found at i:20570175 original size:18 final size:19
Alignment explanation
Indices: 20570129--20570178 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
20570119 AATATTTACT
20570129 AAAATATTATAAATTTATAA
1 AAAATATTA-AAATTTATAA
* *
20570149 ATCATTATTAAAA-TTATAA
1 A-AAATATTAAAATTTATAA
20570168 AAAATATTAAA
1 AAAATATTAAA
20570179 TAAGATTCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 8 0.32
19 7 0.28
20 4 0.16
21 6 0.24
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATATTAAAATTTATAA
Found at i:20570900 original size:17 final size:17
Alignment explanation
Indices: 20570878--20570912 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
20570868 TAGAATGTTT
20570878 TTAGAGCCGATAAGAAA
1 TTAGAGCCGATAAGAAA
*
20570895 TTAGAGCCGGTAAGAAA
1 TTAGAGCCGATAAGAAA
20570912 T
1 T
20570913 AAACTAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.26, T:0.20
Consensus pattern (17 bp):
TTAGAGCCGATAAGAAA
Found at i:20571044 original size:21 final size:22
Alignment explanation
Indices: 20571020--20571061 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
20571010 ATTGACTAAA
*
20571020 TTGTAG-AATAGTAAAAAAATG
1 TTGTAGTAAAAGTAAAAAAATG
*
20571041 TTGTAGTAAAAGTAGAAAAAT
1 TTGTAGTAAAAGTAAAAAAAT
20571062 TAAATGTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (22 bp):
TTGTAGTAAAAGTAAAAAAATG
Found at i:20573036 original size:46 final size:46
Alignment explanation
Indices: 20572961--20573174 Score: 227
Period size: 46 Copynumber: 4.6 Consensus size: 46
20572951 TATGTGTGCT
* *
20572961 AGTGTATGACATGTATGGGACATGCATCAGCCACAGCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGCATGAGAGCC
* * *
20573007 AGCGTAACACATGTCTGGGACATGCATCAGCCACATCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGCATGAGAGCC
* * * * * *
20573053 AGTGTAAGACATCTCTGGAACATGCATCGGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AG-CA-TGAGAGCC
* * * *
20573101 AGTGTAAGACATGTCTGAGACATGCATCAG-CATTGAG-ACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA--CAGCATGAGAGCC
20573147 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
20573175 GGCCTCGTGA
Statistics
Matches: 138, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 100 0.72
47 2 0.01
48 33 0.24
49 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGCATGAGAGCC
Found at i:20573110 original size:48 final size:46
Alignment explanation
Indices: 20573049--20573188 Score: 149
Period size: 48 Copynumber: 3.0 Consensus size: 46
20573039 ACATCATGAG
*
20573049 AGCCAGTGTAAGACATCTCTGGAACATGCATCGGCCTCGAGATATTTA
1 AGCCAGTGTAAGACATGTCTGGAACATGCATCGGCCTCGAGATA--TA
* * * * *
20573097 AGCCAGTGTAAGACATGTCT-GAGACATGCATCAGCATTGAGACGA-G
1 AGCCAGTGTAAGACATGTCTGGA-ACATGCATCGGCCTCGAGA-TATA
* * *
20573143 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATATA
1 AGCCAGTGTAAGACATGTCTGGAACATGCATCGGCCTCGAGATATA
20573189 CAAGCTGGTG
Statistics
Matches: 74, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 34 0.46
47 3 0.04
48 35 0.47
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGAACATGCATCGGCCTCGAGATATA
Found at i:20573123 original size:94 final size:93
Alignment explanation
Indices: 20573003--20573187 Score: 246
Period size: 94 Copynumber: 2.0 Consensus size: 93
20572993 ACAGCATGAG
* *
20573003 AGCCAGCGTAACACATGTCTGGGACATGCATCAGCCACAT-CATGAGAGCCAGTGTAAGACATCT
1 AGCCAGCGTAACACATGTCTGAGACATGCATCAG-CA-ATACACGAGAGCCAGTGTAAGACATCT
20573067 CTGGAACATGCATCGGCCTCGAGATATTTA
64 CTGGAACATGCATCGGCCTCGAGATATTTA
* * * * * *
20573097 AGCCAGTGTAAGACATGTCTGAGACATGCATCAGCATTGAGACGAGAGCTAGTGTAAGACATGTC
1 AGCCAGCGTAACACATGTCTGAGACATGCATCAGCAAT-ACACGAGAGCCAGTGTAAGACATCTC
* *
20573162 TGGGACATGCATCGGCCTCGTGATAT
65 TGGAACATGCATCGGCCTCGAGATAT
20573188 ACAAGCTGGT
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
92 1 0.01
93 2 0.03
94 76 0.96
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (93 bp):
AGCCAGCGTAACACATGTCTGAGACATGCATCAGCAATACACGAGAGCCAGTGTAAGACATCTCT
GGAACATGCATCGGCCTCGAGATATTTA
Found at i:20573296 original size:49 final size:49
Alignment explanation
Indices: 20573239--20573361 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
20573229 ATGGTGTGAT
* * *
20573239 AGTGTAAGACCTGTCTAGGACATGGTATCGACAC-CGA-TAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTC-ACTAGATGAAAGCC
* * * *
20573288 AGTGTAAGACCTGTTTGGGACATGGCATCGGCCTCACTATATGAAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCACTAGATGAAAGCC
20573337 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACC-TGTCTGGGACATG
20573362 ACGTCGACAT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
48 2 0.03
49 49 0.78
50 12 0.19
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCACTAGATGAAAGCC
Found at i:20579929 original size:40 final size:39
Alignment explanation
Indices: 20579871--20580063 Score: 140
Period size: 40 Copynumber: 4.8 Consensus size: 39
20579861 GGATATAGCG
* * * *
20579871 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
20579911 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * *
20579951 ACTCGCACGAA-TGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCAC-AATTGCCTTCGGGACATAGCCCGG-TTTAGTA
* * * *
20579991 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATAG-CCCGG-TTTAGTA
* ** *
20580031 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATAGCCCGG
20580064 ACACCATTCG
Statistics
Matches: 123, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
39 4 0.03
40 90 0.73
41 27 0.22
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:20579983 original size:80 final size:80
Alignment explanation
Indices: 20579871--20580063 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
20579861 GGATATAGCG
* * * * * * *
20579871 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
20579936 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
20579951 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
* *
20580016 GACCCGGATTTAGTC
66 GACCCGGATTTAATA
* * *
20580031 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
20580064 ACACCATTCG
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
80 67 0.71
81 27 0.29
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:20580052 original size:41 final size:39
Alignment explanation
Indices: 20579913--20580064 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 39
20579903 TTATAGTGAT
* *
20579913 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAAC
* * * *
20579953 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* *
20579993 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC
* * *
20580033 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTA-CCCGGA
20580065 CACCATTCGA
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
40 67 0.71
41 27 0.29
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGAATTACCCGGATTTAGTAAC
Found at i:20591469 original size:48 final size:47
Alignment explanation
Indices: 20591322--20591488 Score: 140
Period size: 48 Copynumber: 3.5 Consensus size: 47
20591312 ATATGTGTGC
* * ** * *
20591322 TAGTGCAAGACATGTATGGGACATGCATCAGCCACAGC-AT-GAGAGT
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCC-TTGCGATATAAAGT
* * * * * * *
20591368 TAGTGTAAGACACGTCCGGGACATACATCGGCCTTGAGATATTTAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGCGATA-TAAAGT
*
20591416 CAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGCGATATACAAGT
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGCGATATA-AAGT
* * *
20591464 TAGTGTTAGACCTGTCTTGGACATG
1 TAGTGTAAGACATGTCTGGGACATG
20591489 GAGGCAGCTT
Statistics
Matches: 92, Mismatches: 25, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
45 1 0.01
46 29 0.32
47 1 0.01
48 61 0.66
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (47 bp):
TAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGCGATATAAAGT
Found at i:20600926 original size:39 final size:38
Alignment explanation
Indices: 20600850--20601003 Score: 209
Period size: 39 Copynumber: 3.9 Consensus size: 38
20600840 CCGCACAAAC
* *
20600850 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCAC-ACTTGCACAATT
* *
20600890 GCCTTCGGGCTTAGCCCGGATATCATAGCTTACACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACA-CTTGCACAATT
*
20600929 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACACTT-GCACAATT
*
20600968 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCACACTT-GCACA
20601004 TTCATTCACA
Statistics
Matches: 105, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 3 0.03
39 93 0.89
40 9 0.09
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (38 bp):
GCCTTCGGGCTTAGCCCGGATATCACACTTGCACAATT
Found at i:20606005 original size:17 final size:19
Alignment explanation
Indices: 20605963--20606006 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
20605953 ATGAAATTTT
*
20605963 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
20605982 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
20606000 AA-TATTA
1 AATTATTA
20606007 CTGTCTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:20609272 original size:40 final size:40
Alignment explanation
Indices: 20609227--20609393 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
20609217 CGGAATATAA
20609227 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
20609267 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
20609307 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
20609347 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
20609386 CCGGATAT
1 CCGGATAT
20609394 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:20609377 original size:80 final size:79
Alignment explanation
Indices: 20609227--20609393 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
20609217 CGGAATATAA
* *
20609227 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
20609292 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
20609307 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
20609369 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
20609386 CCGGATAT
1 CCGGATAT
20609394 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:20610239 original size:17 final size:19
Alignment explanation
Indices: 20610216--20610261 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
20610206 AAGAAGCATG
20610216 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
20610234 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
20610252 AATCATGCTC
1 AATCATGCTC
20610262 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:20617274 original size:40 final size:40
Alignment explanation
Indices: 20617229--20617395 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
20617219 CGGAATATAA
20617229 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
20617269 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
20617309 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
20617349 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
20617388 CCGGATAT
1 CCGGATAT
20617396 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:20617379 original size:80 final size:79
Alignment explanation
Indices: 20617229--20617395 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
20617219 CGGAATATAA
* *
20617229 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
20617294 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
20617309 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
20617371 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
20617388 CCGGATAT
1 CCGGATAT
20617396 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:20618244 original size:17 final size:19
Alignment explanation
Indices: 20618221--20618266 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
20618211 AAGAAGCATG
20618221 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
20618239 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
20618257 AATCATGCTC
1 AATCATGCTC
20618267 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:20625530 original size:49 final size:49
Alignment explanation
Indices: 20625435--20625555 Score: 163
Period size: 49 Copynumber: 2.4 Consensus size: 49
20625425 GGATGTTAAA
* * *
20625435 GTAAGACCTGTCTGGGACATGGCATCGAAACCGATAGATGAGAGCCAGT
1 GTAAGACCTGTCTGGGACATGGAATCGAAACCGATAGATGAAAGCCAAT
* * *
20625484 GTAAGACCTGTCTGGGACATGGAATC-AACCTCGCTATATGAAAGCCAAT
1 GTAAGACCTGTCTGGGACATGGAATCGAAAC-CGATAGATGAAAGCCAAT
20625533 GTAAGACCATGTCTGGGACATGG
1 GTAAGACC-TGTCTGGGACATGG
20625556 CGTCGGCATC
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
48 3 0.05
49 47 0.73
50 14 0.22
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.21
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGAATCGAAACCGATAGATGAAAGCCAAT
Found at i:20630511 original size:53 final size:53
Alignment explanation
Indices: 20630441--20630646 Score: 175
Period size: 53 Copynumber: 3.8 Consensus size: 53
20630431 CTTTCCTTTT
* *
20630441 TAAACTTACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTATGTGGTATCCTTGCCTTA
* * * * *
20630494 TGAACTCACCATTGCCATGCCTTGGCATGGTCTTCCATG-GG-ATCTTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTT--ATGTGGTATCCTTGCCTTA
** * * * ** * * *
20630547 TCATAGTTTATCAATGCAATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTG
1 T-A-AACTTACCAATGCCATGCCTTGACATGGTCTTATGTGGTATCCTTGCCTTA
*
20630602 TAAAACTTACCAATGCCATGCCTTGGCATGGTCTTACT-TGGTATC
1 T-AAACTTACCAATGCCATGCCTTGACATGGTCTTA-TGTGGTATC
20630647 ATTAAACCCT
Statistics
Matches: 116, Mismatches: 30, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
53 43 0.37
54 35 0.30
55 38 0.33
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
TAAACTTACCAATGCCATGCCTTGACATGGTCTTATGTGGTATCCTTGCCTTA
Found at i:20631019 original size:30 final size:30
Alignment explanation
Indices: 20630985--20631042 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
20630975 CCTTAACTAT
20630985 AACTTTGGCAAAATTACAATTTTGCCCCTA
1 AACTTTGGCAAAATTACAATTTTGCCCCTA
* * * *
20631015 AACTTTTGCAAATTTACACTTTTTCCCC
1 AACTTTGGCAAAATTACAATTTTGCCCC
20631043 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACAATTTTGCCCCTA
Found at i:20640063 original size:42 final size:42
Alignment explanation
Indices: 20639951--20640070 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
20639941 TACCGTACCA
* * * *
20639951 ATGCCATATCCCAGATATAGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* *
20639993 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
*
20640036 ATGCCATATCCTAGATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCT
20640071 TGGTAACCGT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:20661228 original size:40 final size:40
Alignment explanation
Indices: 20661169--20661336 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
20661159 CATTTGAATG
* * *
20661169 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
20661209 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATT
* * **
20661249 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * * *
20661289 AAACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
20661329 ATATCCGG
1 ATATCCGG
20661337 TTAAATCCCG
Statistics
Matches: 107, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 104 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:20668224 original size:8 final size:9
Alignment explanation
Indices: 20668196--20668232 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
20668186 AATAGGGACT
20668196 AAATTGTAA
1 AAATTGTAA
20668205 AAATTGTAA
1 AAATTGTAA
20668214 AAATTGTAA
1 AAATTGTAA
*
20668223 AAATTTTAA
1 AAATTGTAA
20668232 A
1 A
20668233 GTCAGGGCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (9 bp):
AAATTGTAA
Found at i:20668615 original size:17 final size:18
Alignment explanation
Indices: 20668574--20668613 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
20668564 ATATAATTTT
*
20668574 AAAAATATATAAACTATC
1 AAAAATATAAAAACTATC
20668592 AAAAATACTAAAAAC-ATC
1 AAAAATA-TAAAAACTATC
20668610 AAAA
1 AAAA
20668614 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATATAAAAACTATC
Found at i:20669179 original size:26 final size:26
Alignment explanation
Indices: 20669128--20669179 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
20669118 AATGGTAATT
* *
20669128 AAATGTTAAATTTATATGCTGTTATG
1 AAATGTTAAATTTATATGATGCTATG
*
20669154 AAATGTTAGAATTTGTAT-ATGCTATG
1 AAATGTTA-AATTTATATGATGCTATG
20669180 GCCGAACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.35, C:0.04, G:0.17, T:0.44
Consensus pattern (26 bp):
AAATGTTAAATTTATATGATGCTATG
Found at i:20670738 original size:2 final size:2
Alignment explanation
Indices: 20670731--20670774 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
20670721 GTTGCGCATG
20670731 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20670773 AT
1 AT
20670775 GCTTTAAAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20671062 original size:23 final size:23
Alignment explanation
Indices: 20671032--20671077 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
20671022 TAAATACCTT
20671032 ATTTGAATTATATGTTTGGAAGG
1 ATTTGAATTATATGTTTGGAAGG
20671055 ATTTGAATTATATGTTTGGAAGG
1 ATTTGAATTATATGTTTGGAAGG
20671078 GATGAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.43
Consensus pattern (23 bp):
ATTTGAATTATATGTTTGGAAGG
Found at i:20671655 original size:21 final size:21
Alignment explanation
Indices: 20671614--20671655 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
20671604 GAATTTTTTA
* *
20671614 AATGTTTTCATAAATTTTAAT
1 AATGTTTTCACAAATTATAAT
20671635 AATGTTTT-ACAAATTCATAAT
1 AATGTTTTCACAAATT-ATAAT
20671656 TTTAATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (21 bp):
AATGTTTTCACAAATTATAAT
Found at i:20671669 original size:9 final size:9
Alignment explanation
Indices: 20671651--20671687 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
20671641 TTACAAATTC
20671651 ATAATTTTA
1 ATAATTTTA
*
20671660 ATATTTTTA
1 ATAATTTTA
*
20671669 ATAATTTAA
1 ATAATTTTA
20671678 ATAATTTTA
1 ATAATTTTA
20671687 A
1 A
20671688 GTTCTAAATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
ATAATTTTA
Found at i:20681155 original size:40 final size:40
Alignment explanation
Indices: 20681095--20681261 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
20681085 CGGGATTTAA
* ** *
20681095 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
20681135 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
20681175 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
20681215 CCGGATATAATC-ACTAGCATAAATGCCTTC-GGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
20681254 CCGGATAT
1 CCGGATAT
20681262 CATTCAAATG
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 87 0.81
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:20681242 original size:80 final size:79
Alignment explanation
Indices: 20681095--20681261 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 79
20681085 CGGGATTTAA
* * ** * *
20681095 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
20681160 CCTTCGGGTCTTAGC
66 CCTTC-GGACTTAGC
** * * *
20681175 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
20681239 GCCTTCGGACTTAGC
65 GCCTTCGGACTTAGC
20681254 CCGGATAT
1 CCGGATAT
20681262 CATTCAAATG
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
79 16 0.22
80 56 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGACTTAGC
Found at i:20686731 original size:40 final size:40
Alignment explanation
Indices: 20686615--20686738 Score: 130
Period size: 40 Copynumber: 3.1 Consensus size: 40
20686605 TCGGGACAAC
* *
20686615 CCGGATTTAGTAGCT--CTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTAACTAGCACGAAAGCCTTCGGATCTTAGT
* * * *
20686653 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGTAACTAGCACGAAAGCCTTCGGATCTTAGT
* *
20686693 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGTAAC-TAGCACGAAAGCCTTC-GGATCTTAGT
20686733 CCGGAT
1 CCGGAT
20686739 ATCATTCGAA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
38 14 0.20
40 49 0.69
41 8 0.11
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATTTAGTAACTAGCACGAAAGCCTTCGGATCTTAGT
Found at i:20694660 original size:40 final size:40
Alignment explanation
Indices: 20694611--20694768 Score: 162
Period size: 40 Copynumber: 4.0 Consensus size: 40
20694601 GCCCGGTTAC
* *
20694611 AGTAACTCGCACGAATGCCTTCGGGA-CTTA-ACTCGGATTT
1 AGTAACTCGCACGAAAGCCTTC-GGATCTTAGTC-CGGATTT
* *
20694651 AGTAGCTCGCTCGAAAGCCTTCGGATCTTAGTCCGGATTT
1 AGTAACTCGCACGAAAGCCTTCGGATCTTAGTCCGGATTT
* * *
20694691 AGTAACTCGCACGTATGCCGTCGGATCTTAGTCCGGATTT
1 AGTAACTCGCACGAAAGCCTTCGGATCTTAGTCCGGATTT
* * *
20694731 AGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGCCCGGAT
1 AGTAAC-TCGCACGAAAGCCTTC-GGATCTTAGTCCGGAT
20694769 ATCATTCGAA
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 3 0.03
40 87 0.88
41 9 0.09
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
AGTAACTCGCACGAAAGCCTTCGGATCTTAGTCCGGATTT
Found at i:20702390 original size:43 final size:43
Alignment explanation
Indices: 20702300--20702446 Score: 120
Period size: 43 Copynumber: 3.4 Consensus size: 43
20702290 ACCGAGATGT
* *
20702300 GATTACATGTAAGACCATGTCTAGAACATTGGCATTGTATTTT
1 GATTACATGTAAGACCATGTCTAGAACATTGGCATTGTATATC
* *
20702343 GATTACATGTAAGACCATGTCTGGGACATTGGCATCAT-TA-ATC
1 GATTACATGTAAGACCATGTCTAGAACATTGGCAT--TGTATATC
** * * * * * * *
20702386 GATTATGTATAAGACCCTGTCGAGGACAGTGACATTG-ATATGT
1 GATTACATGTAAGACCATGTCTAGAACATTGGCATTGTATAT-C
*
20702429 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
20702447 ATCTGGGATA
Statistics
Matches: 81, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 74 0.91
44 2 0.02
45 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTAGAACATTGGCATTGTATATC
Found at i:20709477 original size:15 final size:15
Alignment explanation
Indices: 20709457--20709486 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
20709447 ATGGAGGAAG
20709457 AAAAGAAGAAAACCA
1 AAAAGAAGAAAACCA
*
20709472 AAAAGAAGAATACCA
1 AAAAGAAGAAAACCA
20709487 GAGAAATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.13, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAAGAAGAAAACCA
Found at i:20711791 original size:40 final size:40
Alignment explanation
Indices: 20711741--20711950 Score: 300
Period size: 40 Copynumber: 5.2 Consensus size: 40
20711731 CACAAGGCCG
* * * *
20711741 TCGGGTCTTAGCCCGG-ATATGGTCACTAGCGCAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCT
*
20711781 TCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCT
*
20711821 TCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
20711861 TCGGGACTTAGCCCGGAATTAGTAACTCA-CACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACT-AGCACAAATGCCT
* *
20711901 TCGGGACTTAGCCCGGAATTAATCACTAGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
20711941 TCGGGACTTA
1 TCGGGACTTA
20711951 ACCCCGTTAG
Statistics
Matches: 159, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 1 0.01
40 156 0.98
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
Found at i:20719997 original size:40 final size:40
Alignment explanation
Indices: 20719932--20720156 Score: 321
Period size: 40 Copynumber: 5.7 Consensus size: 40
20719922 GGATATAACC
* * * * *
20719932 ACTCGCAC-AAGGCCGTCGGGTCTTAGCCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
20719971 ACTAGCGCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
20720011 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
20720051 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
20720091 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
20720131 ACTAGCACAAATGCCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
20720157 ACCCCGTTAG
Statistics
Matches: 172, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 6 0.03
40 164 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:20724378 original size:20 final size:20
Alignment explanation
Indices: 20724353--20724393 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
20724343 TCATTAAGGA
20724353 ACAAATCTAAACAGTGGTTG
1 ACAAATCTAAACAGTGGTTG
20724373 ACAAATCTAAACAGTGGTTG
1 ACAAATCTAAACAGTGGTTG
20724393 A
1 A
20724394 ACTCGTTACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (20 bp):
ACAAATCTAAACAGTGGTTG
Found at i:20745130 original size:17 final size:18
Alignment explanation
Indices: 20745090--20745131 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
20745080 TAACTTGGTC
20745090 CAAAATTTTAAAAAAATTT
1 CAAAA-TTTAAAAAAATTT
20745109 C-AAATTTAAAAAAA-TT
1 CAAAATTTAAAAAAATTT
20745125 CAAAATT
1 CAAAATT
20745132 ACCCCACTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 3 0.14
17 15 0.68
18 3 0.14
19 1 0.05
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (18 bp):
CAAAATTTAAAAAAATTT
Found at i:20748447 original size:2 final size:2
Alignment explanation
Indices: 20748440--20748471 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
20748430 TTAAATGGTA
*
20748440 AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20748472 GCTTAAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20752842 original size:53 final size:53
Alignment explanation
Indices: 20752784--20752943 Score: 320
Period size: 53 Copynumber: 3.0 Consensus size: 53
20752774 GAGTGTTTGA
20752784 AGTCGTGTCGTTTATTATAAAACTGAGAGTTTTTTCTCTTTCCTCTTTACAAC
1 AGTCGTGTCGTTTATTATAAAACTGAGAGTTTTTTCTCTTTCCTCTTTACAAC
20752837 AGTCGTGTCGTTTATTATAAAACTGAGAGTTTTTTCTCTTTCCTCTTTACAAC
1 AGTCGTGTCGTTTATTATAAAACTGAGAGTTTTTTCTCTTTCCTCTTTACAAC
20752890 AGTCGTGTCGTTTATTATAAAACTGAGAGTTTTTTCTCTTTCCTCTTTACAAC
1 AGTCGTGTCGTTTATTATAAAACTGAGAGTTTTTTCTCTTTCCTCTTTACAAC
20752943 A
1 A
20752944 TCTTTGTTTG
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 107 1.00
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (53 bp):
AGTCGTGTCGTTTATTATAAAACTGAGAGTTTTTTCTCTTTCCTCTTTACAAC
Found at i:20756553 original size:2 final size:2
Alignment explanation
Indices: 20756546--20756576 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
20756536 CATATACAGA
20756546 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20756577 ACATATCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20763476 original size:40 final size:40
Alignment explanation
Indices: 20763354--20763535 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 40
20763344 TATTCGAATG
* * *
20763354 ATATCTGGGCTAAGTCCCTAAGGCT-TTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGG-TATTTATGCTAGTGACT
** * * * *
20763394 ATATCCGAACTAAGATCCGAAGGAATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGTATTTATGCTAG-TGACT
* *
20763434 ATATCCGGGCTAAGACCCGAAGGTATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGTATTTATGCTAGTGACT
* * *
20763474 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGTATTTATGCTAGTGACT
*
20763514 ATATCCGGGCTAA-ACACGAAGG
1 ATATCCGGGCTAAGACCCGAAGG
20763536 CCTTGTGCGA
Statistics
Matches: 117, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 8 0.07
40 107 0.91
41 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGTATTTATGCTAGTGACT
Found at i:20767090 original size:47 final size:47
Alignment explanation
Indices: 20767032--20767657 Score: 1029
Period size: 47 Copynumber: 13.3 Consensus size: 47
20767022 GTATGAGATA
* *
20767032 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
20767079 CATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
20767126 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
20767173 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
20767220 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
20767267 TATATAAGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
20767314 TATATATGTGAGAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
20767361 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
20767408 TATATATGTGATAAGGCCGAATGGCCAATGTAATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
20767455 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
20767502 TATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
20767549 CATATATGTGATAACG-CTGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTG
* * * *
20767596 TATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
20767643 TATAAATGTGATAAG
1 TATATATGTGATAAG
20767658 TCCCGAAGGG
Statistics
Matches: 542, Mismatches: 35, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
46 2 0.00
47 539 0.99
48 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:20767569 original size:25 final size:24
Alignment explanation
Indices: 20767529--20767609 Score: 69
Period size: 25 Copynumber: 3.4 Consensus size: 24
20767519 CTAATGGCCC
*
20767529 ATGTGATGAATGTGAAAGTGCATAT
1 ATGTGAT-AACGTGAAAGTGCATAT
* *
20767554 ATGTGATAACGCTGAATG-GC-CA-
1 ATGTGATAACG-TGAAAGTGCATAT
* *
20767576 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAT-AACGTGAAAGTGCATAT
20767601 ATGTGATAA
1 ATGTGATAA
20767610 GGCCGAGTGG
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
22 12 0.27
23 5 0.11
24 8 0.18
25 19 0.43
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (24 bp):
ATGTGATAACGTGAAAGTGCATAT
Found at i:20767838 original size:37 final size:37
Alignment explanation
Indices: 20767775--20767857 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
20767765 CCGAGCTCTA
* *
20767775 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
* *
20767812 AAGACCCGATGACCACGGGTGTAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
20767849 AAGCCCCGA
1 AAGACCCGA
20767858 ACTAAAGGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:20775895 original size:40 final size:40
Alignment explanation
Indices: 20775832--20776015 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
20775822 TATTCGAATG
* * * *
20775832 ATATCTGGGCTAAGTCCCAAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
20775872 ATATCCGGACTAAGATCCGAAGGCATTTTTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
20775912 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
20775952 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
20775992 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
20776016 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 121 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:20779865 original size:40 final size:40
Alignment explanation
Indices: 20779820--20779986 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
20779810 CGGAATATAA
*
20779820 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
20779860 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
20779900 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
20779940 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
20779979 CCGGATAT
1 CCGGATAT
20779987 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:20779970 original size:80 final size:79
Alignment explanation
Indices: 20779836--20779986 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
20779826 ATAACCATGT
*
20779836 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
20779901 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
20779916 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
20779979 CCGGATAT
64 CCGGATAT
20779987 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:20787885 original size:40 final size:40
Alignment explanation
Indices: 20787840--20788006 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
20787830 CGGAATATAA
*
20787840 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
20787880 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
20787920 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
20787960 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
20787999 CCGGATAT
1 CCGGATAT
20788007 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:20787990 original size:80 final size:79
Alignment explanation
Indices: 20787856--20788006 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
20787846 ATAACCATGT
*
20787856 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
20787921 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
20787936 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
20787999 CCGGATAT
64 CCGGATAT
20788007 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:20790546 original size:42 final size:42
Alignment explanation
Indices: 20790495--20790597 Score: 127
Period size: 44 Copynumber: 2.4 Consensus size: 42
20790485 TCGCAGATAG
* *
20790495 GGTCTTACACAAAATCAGATA-CGATACCGATGTCCCAGACTT
1 GGTCTTACACAAAATCAGA-AGCGATACCAATGTCCCAGACGT
* *
20790537 GGTCTTACACATAAAACAGAAGTCGATGCCAATGTCCCAGACGT
1 GGTCTTACACA-AAATCAGAAG-CGATACCAATGTCCCAGACGT
*
20790581 GGTCTTACACGAAATCA
1 GGTCTTACACAAAATCA
20790598 CATATCAATC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
42 12 0.23
43 12 0.23
44 28 0.54
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.22
Consensus pattern (42 bp):
GGTCTTACACAAAATCAGAAGCGATACCAATGTCCCAGACGT
Found at i:20808124 original size:15 final size:15
Alignment explanation
Indices: 20808096--20808129 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
20808086 GTAATAGATG
*
20808096 TGTGGATGACTTGGT
1 TGTGGATGAATTGGT
*
20808111 TGTGGTTGAATTGGT
1 TGTGGATGAATTGGT
20808126 TGTG
1 TGTG
20808130 TGTATATGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGAATTGGT
Found at i:20819163 original size:43 final size:43
Alignment explanation
Indices: 20819116--20819236 Score: 129
Period size: 42 Copynumber: 2.8 Consensus size: 43
20819106 CCTGAATTGA
* *
20819116 GATTTACGTATAAGACCATGTCTGGGACATCGGCATC-ATATTT
1 GATTTACATGTAAGACCATGTCTGGGACATCGGCATCGATA-TT
* * **
20819159 GATTT-CATGTAAGACCCTGTCTGGGATAGAGGCATCGATATT
1 GATTTACATGTAAGACCATGTCTGGGACATCGGCATCGATATT
* * * *
20819201 GAGTTACATGTAAGACCACGTCCGGGACGTCGGCAT
1 GATTTACATGTAAGACCATGTCTGGGACATCGGCAT
20819237 TGTACTTGTT
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
42 31 0.50
43 31 0.50
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (43 bp):
GATTTACATGTAAGACCATGTCTGGGACATCGGCATCGATATT
Found at i:20819172 original size:42 final size:43
Alignment explanation
Indices: 20819126--20819236 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 43
20819116 GATTTACGTA
*
20819126 TAAGACCATGTCTGGGACATCGGCATC-ATATTTGA-TTTCATG
1 TAAGACCATGTCTGGGACATCGGCATCGATA-TTGAGTTACATG
* * **
20819168 TAAGACCCTGTCTGGGATAGAGGCATCGATATTGAGTTACATG
1 TAAGACCATGTCTGGGACATCGGCATCGATATTGAGTTACATG
* * *
20819211 TAAGACCACGTCCGGGACGTCGGCAT
1 TAAGACCATGTCTGGGACATCGGCAT
20819237 TGTACTTGTT
Statistics
Matches: 55, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 27 0.49
43 28 0.51
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATCGGCATCGATATTGAGTTACATG
Found at i:20822594 original size:30 final size:30
Alignment explanation
Indices: 20822558--20822688 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
20822548 GACAAGATTG
* * * * *
20822558 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
20822588 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
20822616 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
20822646 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
20822675 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
20822689 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:20822649 original size:58 final size:58
Alignment explanation
Indices: 20822558--20822688 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
20822548 GACAAGATTG
* * * * * *
20822558 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
20822616 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
20822675 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
20822689 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:20830606 original size:30 final size:29
Alignment explanation
Indices: 20830488--20830615 Score: 147
Period size: 29 Copynumber: 4.5 Consensus size: 29
20830478 GACAAGATTG
* * * * *
20830488 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAATTATATA
*
20830517 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAATTATATA
20830545 GCACT--GTGTGCGAGCTGAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAATTATATA
*
20830572 GCACTAAGTGTGCGAGCTGAAAATATATTA
1 GCACTAAGTGTGCGAGCTGAAATTATA-TA
20830602 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
20830616 GATTCACTAT
Statistics
Matches: 87, Mismatches: 6, Indels: 11
0.84 0.06 0.11
Matches are distributed among these distances:
25 2 0.02
26 9 0.10
27 13 0.15
28 11 0.13
29 34 0.39
30 18 0.21
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAATTATATA
Found at i:20833011 original size:39 final size:39
Alignment explanation
Indices: 20832968--20833132 Score: 147
Period size: 39 Copynumber: 4.2 Consensus size: 39
20832958 CGGAATATAA
20832968 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAG
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAG
* * * * *
20833007 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAG
* * *
20833046 CCCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 -CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTT-AG
** * * * *
20833086 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAG
20833124 CCCGGATAT
1 -CCGGATAT
20833133 CATTCAATTT
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
38 2 0.02
39 74 0.73
40 26 0.25
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAG
Found at i:20836616 original size:40 final size:40
Alignment explanation
Indices: 20836564--20836715 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
20836554 ATAACCACAA
* ** *
20836564 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTC
*
20836604 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACTC
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTC
* * * *
20836644 GCACGAA-TGCCTTCGGGTCTTAGCCTGGATATAATCACTA
1 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTC
* * * *
20836684 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAACCCGGATAT
20836716 CATTCAAATG
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
39 2 0.02
40 95 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTC
Found at i:20841478 original size:39 final size:39
Alignment explanation
Indices: 20841424--20841665 Score: 427
Period size: 39 Copynumber: 6.3 Consensus size: 39
20841414 AAAGCCTGCG
*
20841424 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCC
1 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
*
20841463 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCC
1 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
20841502 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAG-CC
1 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
*
20841540 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCC
1 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
*
20841579 GGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
1 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
20841618 GGAT--ATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
1 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
20841655 GGATACATTTC
1 GGATACATTTC
20841666 AGTGTCTTGC
Statistics
Matches: 196, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
37 37 0.19
38 37 0.19
39 122 0.62
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (39 bp):
GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCC
Found at i:20841571 original size:77 final size:78
Alignment explanation
Indices: 20841424--20841665 Score: 436
Period size: 77 Copynumber: 3.1 Consensus size: 78
20841414 AAAGCCTGCG
*
20841424 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGC
1 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGC
20841489 GGGACTTTGGCCC
66 GGGACTTTGGCCC
20841502 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAG-CCGGATACATTTCCAGCACGAAGCCTGC
1 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGC
20841566 GGGACTTTGGCCC
66 GGGACTTTGGCCC
*
20841579 GGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGAT--ATTTCCAGCACGAAGCCTGC
1 GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGC
*
20841642 GGGACTTTAGCCC
66 GGGACTTTGGCCC
20841655 GGATACATTTC
1 GGATACATTTC
20841666 AGTGTCTTGC
Statistics
Matches: 159, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
76 42 0.26
77 76 0.48
78 41 0.26
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (78 bp):
GGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGC
GGGACTTTGGCCC
Found at i:20847349 original size:39 final size:39
Alignment explanation
Indices: 20847268--20847535 Score: 445
Period size: 39 Copynumber: 7.0 Consensus size: 39
20847258 ATTATATTAT
* * *
20847268 CAGCACAAAGCCTGTGGGACTTTAACCC-GATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
20847306 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
20847345 CAGCACGAAGCCTGC--GACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
20847382 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
20847421 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
20847460 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATA-ATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
20847498 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
20847536 TCAGTGTCTT
Statistics
Matches: 218, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
37 37 0.17
38 62 0.28
39 119 0.55
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:20847395 original size:76 final size:77
Alignment explanation
Indices: 20847268--20847535 Score: 425
Period size: 76 Copynumber: 3.5 Consensus size: 77
20847258 ATTATATTAT
* * * *
20847268 CAGCACAAAGCCTGTGGGACTTTAACCC-GATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACGAAGCCTG-CGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
20847332 CCGGATACATTTC
65 CCGGATACATTTC
* *
20847345 CAGCACGAAGCCTGC-GACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGTC
1 CAGCACGAAGCCTGCGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCC
20847409 CGGATACATTTC
66 CGGATACATTTC
*
20847421 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
20847486 CCGGATA-ATTTC
65 CCGGATACATTTC
20847498 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGC-GGACTTTAGCCCGGATACATTT
20847536 TCAGTGTCTT
Statistics
Matches: 178, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
75 9 0.05
76 62 0.35
77 55 0.31
78 52 0.29
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (77 bp):
CAGCACGAAGCCTGCGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCC
CGGATACATTTC
Found at i:20847429 original size:115 final size:115
Alignment explanation
Indices: 20847268--20847535 Score: 432
Period size: 115 Copynumber: 2.3 Consensus size: 115
20847258 ATTATATTAT
* * * *
20847268 CAGCACAAAGCCTGTGGGACTTTA-ACCCGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
1 CAGCACGAAGCCTGCGGGACTTTAGACCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
*
20847332 CCGGATACATTTCCAGCACGAAGCCTGC-GACTTTGGCCCGGATACATTTC
66 CCGGATACATTTCCAGCACGAAGCCTGCGGACTTTAGCCCGGATA-ATTTC
*
20847382 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAGACCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
*
20847447 CCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGGATAATTTC
66 CCGGATACATTTCCAGCACGAAGCCTGC-GGACTTTAGCCCGGATAATTTC
*
20847498 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGACCGGATACATTT
20847536 TCAGTGTCTT
Statistics
Matches: 143, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
114 22 0.15
115 64 0.45
116 42 0.29
117 15 0.10
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (115 bp):
CAGCACGAAGCCTGCGGGACTTTAGACCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
CCGGATACATTTCCAGCACGAAGCCTGCGGACTTTAGCCCGGATAATTTC
Found at i:20852116 original size:18 final size:21
Alignment explanation
Indices: 20852070--20852110 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
20852060 ATTTTCAACC
20852070 TAAATTAAATTGAAATTCAAAAT
1 TAAA-TAAATTGAAATT-AAAAT
20852093 TAAATAAATTG-AATTAAA
1 TAAATAAATTGAAATTAAA
20852111 TAAATATGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.17
21 4 0.22
22 7 0.39
23 4 0.22
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (21 bp):
TAAATAAATTGAAATTAAAAT
Found at i:20854131 original size:46 final size:45
Alignment explanation
Indices: 20854078--20854288 Score: 176
Period size: 46 Copynumber: 4.5 Consensus size: 45
20854068 GTTGTTGGCT
* *
20854078 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACGA-GACGAGAGCC
* * ** * *
20854124 AGTGTAAGACCATTTCTGGGACATGGCATTGATATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCA-CGAGACGAGAGCC
* * *
20854172 AGTGTAAGACTTGTCCGGGACATGCATCGACCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCACGAGACG-AGAGCC
* * *
20854218 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATG-GTAGTC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACGAGACGAG-AGCC
*
20854264 AGTGTAAGACCATGTTTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
20854289 GCACCAGCAC
Statistics
Matches: 131, Mismatches: 24, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
46 68 0.52
47 42 0.32
48 20 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACGAGACGAGAGCC
Found at i:20862127 original size:20 final size:22
Alignment explanation
Indices: 20862098--20862137 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
20862088 ATTGATTTAT
*
20862098 GGAAATTATA-AT-TATTATTA
1 GGAAAATATATATATATTATTA
20862118 GGAAAATATATATATATTAT
1 GGAAAATATATATATATTAT
20862138 CGTATTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (22 bp):
GGAAAATATATATATATTATTA
Found at i:20864111 original size:25 final size:25
Alignment explanation
Indices: 20864082--20864129 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
20864072 TTATAATATG
* * *
20864082 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
20864107 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
20864130 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:20864198 original size:20 final size:20
Alignment explanation
Indices: 20864173--20864231 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
20864163 TAAATATGGT
20864173 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
20864193 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
20864213 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
20864232 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:20864213 original size:11 final size:11
Alignment explanation
Indices: 20864177--20864231 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
20864167 TATGGTATGT
20864177 ATGATATGCAC
1 ATGATATGCAC
* *
20864188 ATGAAATG--T
1 ATGATATGCAC
20864197 ATGATATGCAC
1 ATGATATGCAC
*
20864208 ATGATATG--T
1 ATGATATGCAC
20864217 ATGATATGCAC
1 ATGATATGCAC
20864228 ATGA
1 ATGA
20864232 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:20864320 original size:24 final size:23
Alignment explanation
Indices: 20864282--20864445 Score: 219
Period size: 24 Copynumber: 7.0 Consensus size: 23
20864272 GAGGAAGTGA
20864282 AAAAGGGCTTA-GCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
20864304 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
20864328 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
20864352 -AAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
20864374 TAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
20864397 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
20864421 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
20864445 A
1 A
20864446 TGATAAAGCA
Statistics
Matches: 131, Mismatches: 4, Indels: 11
0.90 0.03 0.08
Matches are distributed among these distances:
22 30 0.23
23 35 0.27
24 56 0.43
25 10 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:20864362 original size:46 final size:46
Alignment explanation
Indices: 20864282--20864445 Score: 219
Period size: 46 Copynumber: 3.5 Consensus size: 46
20864272 GAGGAAGTGA
20864282 AAAAGGGCTTA-GCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
20864328 CAAAAGGGCTTATGCCCCAGTTAT-AAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
* *
20864374 TAAAGGGCTTATG-CCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTA-T
*
20864421 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
20864446 TGATAAAGCA
Statistics
Matches: 106, Mismatches: 4, Indels: 13
0.86 0.03 0.11
Matches are distributed among these distances:
44 8 0.08
45 13 0.12
46 42 0.40
47 19 0.18
48 17 0.16
49 7 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:20864668 original size:30 final size:30
Alignment explanation
Indices: 20864634--20864695 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
20864624 CGTTTACAGT
20864634 AAAGGCTTCGGCCCA-GTAATATGAAAT-TGA
1 AAAGGCTTCGGCCCATGT--TATGAAATATGA
20864664 AAAGGCTTCGGCCCATGTTATGAAATATGA
1 AAAGGCTTCGGCCCATGTTATGAAATATGA
20864694 AA
1 AA
20864696 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 8 0.27
30 20 0.67
31 2 0.07
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCCATGTTATGAAATATGA
Found at i:20868686 original size:25 final size:25
Alignment explanation
Indices: 20868657--20868704 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
20868647 TTATAATATG
* * *
20868657 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
20868682 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
20868705 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:20868773 original size:20 final size:20
Alignment explanation
Indices: 20868748--20868806 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
20868738 TAAATATGGT
20868748 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
20868768 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
20868788 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
20868807 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:20868788 original size:11 final size:11
Alignment explanation
Indices: 20868752--20868806 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
20868742 TATGGTATGT
20868752 ATGATATGCAC
1 ATGATATGCAC
* *
20868763 ATGAAATG--T
1 ATGATATGCAC
20868772 ATGATATGCAC
1 ATGATATGCAC
*
20868783 ATGATATG--T
1 ATGATATGCAC
20868792 ATGATATGCAC
1 ATGATATGCAC
20868803 ATGA
1 ATGA
20868807 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:20868884 original size:24 final size:23
Alignment explanation
Indices: 20868857--20869022 Score: 237
Period size: 24 Copynumber: 7.0 Consensus size: 23
20868847 GAGGAAGTGA
20868857 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
20868880 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
20868904 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
20868928 -AAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
20868950 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
20868974 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
20868998 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
20869022 A
1 A
20869023 TGATAAAGCA
Statistics
Matches: 134, Mismatches: 4, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
22 22 0.16
23 21 0.16
24 81 0.60
25 10 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:20868972 original size:69 final size:70
Alignment explanation
Indices: 20868858--20868996 Score: 244
Period size: 69 Copynumber: 2.0 Consensus size: 70
20868848 AGGAAGTGAA
20868858 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
20868923 GTTAT
66 GTTAT
* * *
20868928 AAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCA
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
20868992 GTTAT
66 GTTAT
20868997 TAAAAGAGGC
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
69 44 0.67
70 22 0.33
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (70 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTAT
Found at i:20869246 original size:30 final size:31
Alignment explanation
Indices: 20869212--20869274 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
20869202 CGTTTACAGT
20869212 AAAGGCTTCGGCCCAGTAATATGAAAT-TGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
20869242 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
20869273 AA
1 AA
20869275 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:20872372 original size:30 final size:30
Alignment explanation
Indices: 20872338--20872400 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
20872328 CTATAAGATG
20872338 TATGATTATAATTGAGCATGCCATTTTAAA
1 TATGATTATAATTGAGCATGCCATTTTAAA
*
20872368 TATGATTATAATTGAGCATGTCATTTTAAA
1 TATGATTATAATTGAGCATGCCATTTTAAA
20872398 TAT
1 TAT
20872401 ATTGAATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.43
Consensus pattern (30 bp):
TATGATTATAATTGAGCATGCCATTTTAAA
Found at i:20878805 original size:48 final size:48
Alignment explanation
Indices: 20878734--20878839 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
20878724 TACAAGATAA
* * *
20878734 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
20878782 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
20878830 ATGTGTATAT
1 ATATGTATAT
20878840 ATTGTGGCTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Done.