Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 70 of 292
Found at i:21254753 original size:93 final size:92
Alignment explanation
Indices: 21254595--21254764 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 92
21254585 GCCCCTAAGT
*
21254595 GAACTCGGACTCAACTCAACAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
21254660 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
21254687 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAC-AGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
21254752 CGAGTTCGGATGC
65 CGAGTTCGGATGC
21254765 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 20 0.27
93 55 0.73
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:21254754 original size:46 final size:46
Alignment explanation
Indices: 21254590--21254761 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
21254580 AACCCGCCCC
* *
21254590 TAAGTGAACTCGGACTCAACTCAAC-AGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
21254635 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
21254683 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
21254728 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
21254762 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 8, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 27 0.25
46 35 0.32
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:21278761 original size:50 final size:50
Alignment explanation
Indices: 21278644--21278925 Score: 315
Period size: 50 Copynumber: 5.7 Consensus size: 50
21278634 GTGAGAATCA
* *
21278644 TGTGTAGTACTATGTGCAGGCTACTATGTG-----GGTT-TTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACG
* *
21278688 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACG
* * * * * * *
21278738 TGTGTAGTACTAAGTACAAGCTACTATGCGTACCCGATAGCTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGTCACG
** * *
21278789 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACG
* * * * *
21278839 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACG
* *
21278889 AGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
21278926 GAGGTTCGGC
Statistics
Matches: 197, Mismatches: 34, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
44 29 0.15
49 3 0.02
50 127 0.64
51 38 0.19
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACG
Found at i:21278810 original size:101 final size:100
Alignment explanation
Indices: 21278678--21278925 Score: 300
Period size: 101 Copynumber: 2.5 Consensus size: 100
21278668 TATGTGGGTT
* * *
21278678 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACATGTGT
* *
21278743 AGTACTAAGTACAAGCTACTATGCGTACCCGA-TA
66 AGTACTAAGTACAAGCTACTACGCGTACCAGATTA
* ** * *
21278777 GCTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTGT
1 --TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACATGT
* * * *
21278842 GTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTA
64 GTAGTACTAAGTACAAGCTACTACGCGTACCAGATTA
* * ** *
21278879 TTAGGTCGCAAGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
21278926 GAGGTTCGGC
Statistics
Matches: 123, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
100 38 0.31
101 83 0.67
102 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (100 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGTCACATGTGT
AGTACTAAGTACAAGCTACTACGCGTACCAGATTA
Found at i:21294532 original size:46 final size:46
Alignment explanation
Indices: 21294465--21294593 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
21294455 TGTAACCCGC
* * *
21294465 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
21294511 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
21294557 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
21294594 TGCCCAAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:21297021 original size:30 final size:30
Alignment explanation
Indices: 21296977--21297065 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
21296967 CAAAGATAAC
21296977 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
21297006 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
21297036 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
21297066 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:21297025 original size:15 final size:15
Alignment explanation
Indices: 21296977--21297056 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
21296967 CAAAGATAAC
*
21296977 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
21296991 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
21297006 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
21297021 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
21297036 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
21297051 AAGAAA
1 AAGAAA
21297057 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:21297065 original size:15 final size:15
Alignment explanation
Indices: 21296988--21297065 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
21296978 AGAAAACCGA
21296988 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
21297003 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
21297017 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
21297032 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
21297048 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
21297063 ATA
1 ATA
21297066 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:21300126 original size:93 final size:93
Alignment explanation
Indices: 21300014--21300185 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
21300004 GCCCATAAGT
* *
21300014 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
21300079 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
21300107 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
21300172 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
21300186 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:21300181 original size:46 final size:46
Alignment explanation
Indices: 21300006--21300181 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
21299996 TGTAACCCGC
* * *
21300006 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
21300052 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
21300102 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
21300145 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
21300182 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:21302615 original size:43 final size:42
Alignment explanation
Indices: 21302530--21302669 Score: 138
Period size: 43 Copynumber: 3.3 Consensus size: 42
21302520 TATCCCAGTT
* * * * *
21302530 ATGGTCTTTCATGTTATCAT-ATATCGATGCCACTATCGCAGAC
1 ATGGTCTTACACG-TATCATAATAT-GATGCCAATGTCCCAGAC
*
21302573 AGGGTCTTACACGATATCATAATATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACG-TATCATAATATGATGCCAATGTCCCAGAC
* * ** *
21302616 ATTGTCTTACACGTAATCACAATACAATGCCAATGTCCCAAAC
1 ATGGTCTTACACGT-ATCATAATATGATGCCAATGTCCCAGAC
21302659 ATGGTCTTACA
1 ATGGTCTTACA
21302670 TGTAATCACA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 1 0.01
43 76 0.94
44 4 0.05
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACACGTATCATAATATGATGCCAATGTCCCAGAC
Found at i:21310571 original size:28 final size:28
Alignment explanation
Indices: 21310534--21310640 Score: 103
Period size: 28 Copynumber: 3.8 Consensus size: 28
21310524 TATGAGAATG
21310534 AATATAAATGTGATTTGGGCCTAATGGC
1 AATATAAATGTGATTTGGGCCTAATGGC
* *
21310562 AATATGAATGTGGTTTGGGCCTAATGGGCC
1 AATATAAATGTGATTTGGGCCTAAT-GG-C
* *
21310592 AA-CTAAATGTGA-ATGGGCCTAATGGGC
1 AATATAAATGTGATTTGGGCCTAAT-GGC
* * *
21310619 TATATAAAAGAGA-TTGGGCCTA
1 AATATAAATGTGATTTGGGCCTA
21310641 GTGGGTCATA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
27 2 0.03
28 51 0.78
29 9 0.14
30 3 0.05
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (28 bp):
AATATAAATGTGATTTGGGCCTAATGGC
Found at i:21315515 original size:15 final size:15
Alignment explanation
Indices: 21315495--21315526 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
21315485 TCAGGAAGGG
21315495 GAAGAGCAAGAAAGT
1 GAAGAGCAAGAAAGT
*
21315510 GAAGAGGAAGAAAGT
1 GAAGAGCAAGAAAGT
21315525 GA
1 GA
21315527 TGGAACAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.38, T:0.06
Consensus pattern (15 bp):
GAAGAGCAAGAAAGT
Found at i:21318524 original size:40 final size:40
Alignment explanation
Indices: 21318465--21318672 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
21318455 CAATTGAATG
* * * *
21318465 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
21318505 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
21318545 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
21318585 AAACCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
21318625 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
21318665 ATATCCGG
1 ATATCCGG
21318673 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
39 2 0.01
40 134 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:21318603 original size:80 final size:80
Alignment explanation
Indices: 21318467--21318657 Score: 215
Period size: 80 Copynumber: 2.4 Consensus size: 80
21318457 ATTGAATGAT
* * ** * * * *
21318467 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAACCCGGGCTAAGACCCGAAGG-CAT
*
21318531 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
** *
21318547 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAACCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAACCCGGGCTAAGACCCGAAGGCATT
** *
21318612 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
21318627 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
21318658 TGTGGTTATA
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
79 2 0.02
80 90 0.96
81 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATTAAACCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:21321620 original size:20 final size:21
Alignment explanation
Indices: 21321592--21321631 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
21321582 ATATTTGATT
21321592 ATTTGATTTCTCATTT-TTTTC
1 ATTTGATTTC-CATTTATTTTC
21321613 ATTT-ATTTCCATTTATTTT
1 ATTTGATTTCCATTTATTTT
21321632 TACTATAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 9 0.50
21 4 0.22
ACGTcount: A:0.17, C:0.12, G:0.03, T:0.68
Consensus pattern (21 bp):
ATTTGATTTCCATTTATTTTC
Found at i:21325685 original size:16 final size:16
Alignment explanation
Indices: 21325651--21325702 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
21325641 TATTTTTGTA
*
21325651 ATATTATATATT-A-T
1 ATATTTTATATTAATT
21325665 ATATTTT-TATTAATCT
1 ATATTTTATATTAAT-T
21325681 ATATTTTAATATTAATT
1 ATATTTT-ATATTAATT
21325698 ATATT
1 ATATT
21325703 AAAAATGTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
13 4 0.12
14 7 0.22
16 8 0.25
17 6 0.19
18 7 0.22
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (16 bp):
ATATTTTATATTAATT
Found at i:21327307 original size:41 final size:40
Alignment explanation
Indices: 21327246--21327325 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 40
21327236 AAAAAAATTC
* **
21327246 AAAAATCCCAAAAATATTTTCTATTTTTATTTTTAATTTTTT
1 AAAAATCCCAAAAAAATTTTCT-TCATTA-TTTTAATTTTTT
21327288 AAAAAT-CCAAAAAAATTTTCTTCATTATTTTAATTTTT
1 AAAAATCCCAAAAAAATTTTCTTCATTATTTTAATTTTT
21327326 GTTATTGCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
39 11 0.31
40 4 0.11
41 14 0.40
42 6 0.17
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (40 bp):
AAAAATCCCAAAAAAATTTTCTTCATTATTTTAATTTTTT
Found at i:21328090 original size:21 final size:21
Alignment explanation
Indices: 21328066--21328128 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
21328056 GAAAGGAGCA
21328066 TAAAATAGTAATCATAGTGCG
1 TAAAATAGTAATCATAGTGCG
* * *
21328087 TAAAA-A-CAA--A-AGAGCA
1 TAAAATAGTAATCATAGTGCG
21328103 TAAAATAGTAATCATAGTGCG
1 TAAAATAGTAATCATAGTGCG
21328124 TAAAA
1 TAAAA
21328129 ACAAGCTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
16 9 0.29
17 2 0.06
18 2 0.06
19 2 0.06
20 2 0.06
21 14 0.45
ACGTcount: A:0.52, C:0.10, G:0.16, T:0.22
Consensus pattern (21 bp):
TAAAATAGTAATCATAGTGCG
Found at i:21328102 original size:37 final size:37
Alignment explanation
Indices: 21328051--21328132 Score: 146
Period size: 37 Copynumber: 2.2 Consensus size: 37
21328041 TCAAAAAAAG
* *
21328051 AAAAAGAAAGGAGCATAAAATAGTAATCATAGTGCGT
1 AAAAACAAAAGAGCATAAAATAGTAATCATAGTGCGT
21328088 AAAAACAAAAGAGCATAAAATAGTAATCATAGTGCGT
1 AAAAACAAAAGAGCATAAAATAGTAATCATAGTGCGT
21328125 AAAAACAA
1 AAAAACAA
21328133 GCTAATATCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.56, C:0.10, G:0.17, T:0.17
Consensus pattern (37 bp):
AAAAACAAAAGAGCATAAAATAGTAATCATAGTGCGT
Found at i:21334639 original size:22 final size:22
Alignment explanation
Indices: 21334614--21334656 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
21334604 CTAAGTCAAC
21334614 AGGACGAATCAACGTCGTAGAT
1 AGGACGAATCAACGTCGTAGAT
** *
21334636 AGGACGGCTCAATGTCGTAGA
1 AGGACGAATCAACGTCGTAGA
21334657 CATTACAGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.19, G:0.30, T:0.19
Consensus pattern (22 bp):
AGGACGAATCAACGTCGTAGAT
Found at i:21335043 original size:13 final size:13
Alignment explanation
Indices: 21335025--21335052 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
21335015 AACAGACATA
21335025 ACGGCCTAGACAC
1 ACGGCCTAGACAC
21335038 ACGGCCTAGACAC
1 ACGGCCTAGACAC
21335051 AC
1 AC
21335053 AGGCGTGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.39, G:0.21, T:0.07
Consensus pattern (13 bp):
ACGGCCTAGACAC
Found at i:21335351 original size:33 final size:33
Alignment explanation
Indices: 21335314--21335377 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
21335304 ACTTCTAAAG
21335314 CATGTTTAAGTCATCGTAGGCCCTTATAAGAAT
1 CATGTTTAAGTCATCGTAGGCCCTTATAAGAAT
*
21335347 CATGTTTAAGTCGTCGTAGGCCCTTATAAGA
1 CATGTTTAAGTCATCGTAGGCCCTTATAAGA
21335378 GACAATGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (33 bp):
CATGTTTAAGTCATCGTAGGCCCTTATAAGAAT
Found at i:21340370 original size:42 final size:43
Alignment explanation
Indices: 21340257--21340372 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
21340247 GGAATTTAGA
* * **
21340257 AATCTGAGCTCATTGAGTGGTCTGAGTTTGTGATATATGTGAG
1 AATCCGAGCTCGTTGAGTGGTCTGAGTTCATGATATATGTGAG
* * * ** *
21340300 AATCTGAACTTGTTGAGTGGTCCAAGTTCATGATCTATGTG-G
1 AATCCGAGCTCGTTGAGTGGTCTGAGTTCATGATATATGTGAG
* *
21340342 CATCCGAGCTCGTTGAGAGGTCTGAGTTCAT
1 AATCCGAGCTCGTTGAGTGGTCTGAGTTCAT
21340373 TATGGATGTA
Statistics
Matches: 58, Mismatches: 15, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.34
Consensus pattern (43 bp):
AATCCGAGCTCGTTGAGTGGTCTGAGTTCATGATATATGTGAG
Found at i:21352239 original size:15 final size:15
Alignment explanation
Indices: 21352219--21352250 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
21352209 ATGTATCACA
*
21352219 TAGTTCTAAAAATGT
1 TAGTTCTAAAAAGGT
21352234 TAGTTCTAAAAAGGT
1 TAGTTCTAAAAAGGT
21352249 TA
1 TA
21352251 CTAAGTGAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (15 bp):
TAGTTCTAAAAAGGT
Found at i:21359156 original size:24 final size:24
Alignment explanation
Indices: 21359110--21359156 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
21359100 AATCTCAAAT
* *
21359110 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCAAATTACTATG
21359134 GCACTATGTGTGCAACATT-CTAT
1 GCACTATGTGTGCAA-ATTACTAT
21359157 TGTTGATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCAAATTACTATG
Found at i:21364891 original size:22 final size:22
Alignment explanation
Indices: 21364863--21364985 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
21364853 GAATGCATAT
21364863 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
21364885 ATGTGATGAATGTG-AGCAT-GCATA
1 ATGTGAT-AA-G-GCCGAATGGC-CA
21364909 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
21364932 ATGTGATGAATGTG-AGCAT-GCATA
1 ATGTGAT-AA-G-GCCGAATGGC-CA
21364956 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
21364979 ATGTGAT
1 ATGTGAT
21364986 GAATGTGAGC
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:21364916 original size:47 final size:47
Alignment explanation
Indices: 21364840--21365076 Score: 383
Period size: 47 Copynumber: 5.1 Consensus size: 47
21364830 TTAGGATTTT
21364840 ATGTGATGAATGTGA--ATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
21364885 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
21364932 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
*
21364979 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
21365026 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
21365071 ATGTGA
1 ATGTGA
21365077 AATATATATA
Statistics
Matches: 181, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
45 40 0.22
47 141 0.78
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:21365034 original size:25 final size:25
Alignment explanation
Indices: 21364959--21365034 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
21364949 ATGCATATAT
21364959 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
21364984 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
21365006 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
21365031 GTGA
1 GTGA
21365035 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:21365108 original size:50 final size:50
Alignment explanation
Indices: 21365035--21365181 Score: 244
Period size: 50 Copynumber: 3.0 Consensus size: 50
21365025 AATGTGGTGA
*
21365035 ATATGA-ACATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
21365084 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
21365134 ATATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
21365182 GTAGGCGATG
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
49 7 0.08
50 86 0.92
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.30
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:21365146 original size:141 final size:138
Alignment explanation
Indices: 21364855--21365131 Score: 326
Period size: 141 Copynumber: 2.0 Consensus size: 138
21364845 ATGAATGTGA
* * * *
21364855 ATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATATGTGATAAG
1 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCA-ATATGTGATAAA
* *
21364920 GCCGAATGGCCAATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
65 GCCGAATGGCCAATGTGATGAATATGAGCATGCA-ATATGTGATAAAGCCGAATGGCCAATGTGA
* *
21364985 TGAATGTGAGC
129 -GAATATGAAC
* *
21364996 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGC-ATATGTGGTAAAG
1 ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCAATATGTGATAAAG
* * * * *
21365060 CCGAATGGTCAATGTGAAATATATATATGAGATATGC-ATATGTGGTAAAGCCGAATGGTCAATG
66 CCGAATGGCCAATGTG--AT-GA-ATATGAG-CATGCAATATGTGATAAAGCCGAATGGCCAATG
21365124 TGA-AATAT
126 TGAGAATAT
21365132 ATATATGAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
139 26 0.22
140 4 0.03
141 49 0.42
142 28 0.24
143 6 0.05
144 4 0.03
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.27
Consensus pattern (138 bp):
ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCAATATGTGATAAAG
CCGAATGGCCAATGTGATGAATATGAGCATGCAATATGTGATAAAGCCGAATGGCCAATGTGAGA
ATATGAAC
Found at i:21365418 original size:35 final size:36
Alignment explanation
Indices: 21365330--21365437 Score: 173
Period size: 37 Copynumber: 3.0 Consensus size: 36
21365320 TGGAAATATA
21365330 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATT-T
*
21365367 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
* *
21365403 TTCC-GGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
21365438 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 29 0.43
36 4 0.06
37 34 0.51
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (36 bp):
TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
Found at i:21366761 original size:39 final size:39
Alignment explanation
Indices: 21366707--21367088 Score: 549
Period size: 39 Copynumber: 9.8 Consensus size: 39
21366697 GAGAATTGAG
*
21366707 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
*
21366746 AGTGATGTATCCGGGCTAAGTCCCAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
21366785 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
*
21366825 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
*
21366864 AGTGATGTATCCGGACTAAGTCCCGAAG-GCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
21366903 AGTGAT-TATCC-GGCTAAGTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
* *
21366940 AGTGATGTAT-CAGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
*
21366979 AGTGATGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAG-TCCGAAGAGCATTCGTGCT
* * **
21367019 AGT-ATATATCCGTGCTAAACCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
* * * *
21367057 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCA
21367089 ATCATGCTGG
Statistics
Matches: 311, Mismatches: 22, Indels: 19
0.88 0.06 0.05
Matches are distributed among these distances:
36 6 0.02
37 25 0.08
38 34 0.11
39 165 0.53
40 80 0.26
41 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
AGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCT
Found at i:21366837 original size:79 final size:79
Alignment explanation
Indices: 21366707--21367088 Score: 562
Period size: 79 Copynumber: 4.9 Consensus size: 79
21366697 GAGAATTGAG
* *
21366707 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCA
21366771 AGAGCATTCGTGCT
66 AGAGCATTCGTGCT
*
21366785 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCA
21366850 AGAGCATTCGTGCT
66 AGAGCATTCGTGCT
* *
21366864 AGTGATGTATCCGGACTAAGTCCCGAAG-GCATTCGTGCTAGTGAT-TATCC-GGCTAAGTCCGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCA
21366926 AGAGCATTCGTGCT
66 AGAGCATTCGTGCT
* * * *
21366940 AGTGATGTAT-CAGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAG-TCCC
21367004 AAGAGCATTCGTGCT
65 AAGAGCATTCGTGCT
* * * * * *
21367019 AGT-ATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC-
21367082 AAGAGCA
65 AAGAGCA
21367089 ATCATGCTGG
Statistics
Matches: 281, Mismatches: 16, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
75 16 0.06
76 53 0.19
77 13 0.05
78 91 0.32
79 108 0.38
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCA
AGAGCATTCGTGCT
Found at i:21374090 original size:46 final size:46
Alignment explanation
Indices: 21374023--21374331 Score: 492
Period size: 46 Copynumber: 6.7 Consensus size: 46
21374013 TGGCAACCTG
*
21374023 TGTGTAAGACCGTGGTTGAAAGATACCATGGCAACCTGATATAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAA
21374069 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAA
21374115 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAA
*
21374161 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAA
* *
21374207 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAA
*** * * *
21374253 TGAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAA
* * * *
21374299 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
21374332 TCATGTCAAA
Statistics
Matches: 248, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 248 1.00
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAA
Found at i:21374208 original size:138 final size:135
Alignment explanation
Indices: 21373936--21374331 Score: 548
Period size: 138 Copynumber: 3.0 Consensus size: 135
21373926 AGTGTGCTCT
21373936 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG------A-GTGTAAGA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAATGTGTAAGA
*
21373994 CCATGGTTGAAAGATACCATGGCAACCTG------TGTGTAAGACCGTGGTTGAAAGATACCATG
66 CCATGGTTGAAAGATACCATGGCAACCTGAAAAAATGTGTAAGACCATGGTTGAAAGATACCATG
21374053 GCAAC
131 GCAAC
*
21374058 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT-AAATGTGTAAG
21374123 ACCATGGTTGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACC
65 ACCATGGTTGAAAGATACCATGGCAACCTGA-A-AAAATGTGTAAGACCATGGTTGAAAGATACC
21374188 ATGGCAAC
128 ATGGCAAC
* ***
21374196 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATAT-AAATGTGTAAG
* * * * *
21374261 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
65 ACCATGGTTGAAAGATACCATGGCAACCTGA-A-AAAATGTGTAAGACCATGGTTGAAAGATACC
21374326 ATGGCA
128 ATGGCA
21374332 TCATGTCAAA
Statistics
Matches: 243, Mismatches: 15, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
122 48 0.20
129 1 0.00
130 37 0.15
138 157 0.65
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (135 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAATGTGTAAGA
CCATGGTTGAAAGATACCATGGCAACCTGAAAAAATGTGTAAGACCATGGTTGAAAGATACCATG
GCAAC
Found at i:21375005 original size:47 final size:47
Alignment explanation
Indices: 21374938--21375057 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 47
21374928 GGAGTGTTAC
* *
21374938 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATAT
* *
21374985 GTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATAT
* *
21375032 ATG-G-TAAAGCCGAATGGTCAATGTGA
1 ATGTGATAAGGCCGAATGGCCAATGTGA
21375058 AATATATATA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
45 19 0.29
46 1 0.02
47 45 0.69
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (47 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATAT
Found at i:21375015 original size:25 final size:25
Alignment explanation
Indices: 21374940--21375015 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
21374930 AGTGTTACAT
21374940 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
21374965 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
21374987 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
21375012 GTGA
1 GTGA
21375016 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:21375090 original size:50 final size:50
Alignment explanation
Indices: 21375016--21375162 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
21375006 AATGTGGTGA
* *
21375016 ATATGA-ACATGCATATATGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
*
21375065 ATATGAGATATGCATATGTGGTAAAGCGGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
21375115 ATATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
21375163 GTAGGTGATG
Statistics
Matches: 90, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
49 7 0.08
50 83 0.92
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.30
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:21375420 original size:37 final size:37
Alignment explanation
Indices: 21375312--21375420 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
21375302 GGAAATATAT
*
21375312 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
21375349 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
21375386 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
21375421 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:21376607 original size:15 final size:15
Alignment explanation
Indices: 21376587--21376617 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
21376577 TGGTCGTGTC
21376587 TCTGCCTGTGTGGAA
1 TCTGCCTGTGTGGAA
21376602 TCTGCCTGTGTGGAA
1 TCTGCCTGTGTGGAA
21376617 T
1 T
21376618 ATACCTAGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.32, T:0.35
Consensus pattern (15 bp):
TCTGCCTGTGTGGAA
Found at i:21382163 original size:31 final size:31
Alignment explanation
Indices: 21382110--21382184 Score: 73
Period size: 30 Copynumber: 2.4 Consensus size: 31
21382100 TAAAAAATAA
* * *
21382110 AAATTCAATTTTTTTTTAAAAAAATTGA-TGATC
1 AAATTTAA-TTTTTTCT-AAAAAATTAATTG-TC
*
21382143 ATATTTAATTTTTTCT-AAAAATTAATTGTC
1 AAATTTAATTTTTTCTAAAAAATTAATTGTC
21382173 AAATTTAATTTT
1 AAATTTAATTTT
21382185 AAGAAAAATA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 21 0.58
31 2 0.06
32 7 0.19
33 6 0.17
ACGTcount: A:0.40, C:0.05, G:0.04, T:0.51
Consensus pattern (31 bp):
AAATTTAATTTTTTCTAAAAAATTAATTGTC
Found at i:21382270 original size:19 final size:19
Alignment explanation
Indices: 21382246--21382284 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
21382236 TTTTCATTCC
21382246 TATGTTTTTCTAAAGAAGA
1 TATGTTTTTCTAAAGAAGA
21382265 TATGTTTTTCTAAAGAAGA
1 TATGTTTTTCTAAAGAAGA
21382284 T
1 T
21382285 CTTTGCTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.44
Consensus pattern (19 bp):
TATGTTTTTCTAAAGAAGA
Found at i:21383613 original size:34 final size:34
Alignment explanation
Indices: 21383570--21383637 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
21383560 AATGCCAATC
21383570 AAGCTAAAACTCAATCAATATAGAATTTATCTTT
1 AAGCTAAAACTCAATCAATATAGAATTTATCTTT
21383604 AAGCTAAAACTCAATCAATATAGAATTTATCTTT
1 AAGCTAAAACTCAATCAATATAGAATTTATCTTT
21383638 TTATTGATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (34 bp):
AAGCTAAAACTCAATCAATATAGAATTTATCTTT
Found at i:21384182 original size:15 final size:16
Alignment explanation
Indices: 21384149--21384184 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
21384139 GGCATAATTT
*
21384149 AAAATGAAAATTTTAA
1 AAAATGAAAATTATAA
21384165 AAAATGAAAATTATAA
1 AAAATGAAAATTATAA
21384181 AAAA
1 AAAA
21384185 GGAAGATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (16 bp):
AAAATGAAAATTATAA
Found at i:21386571 original size:2 final size:2
Alignment explanation
Indices: 21386564--21386591 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
21386554 TCAGCCACTG
21386564 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21386592 TGATCAACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21388668 original size:16 final size:15
Alignment explanation
Indices: 21388631--21388669 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
21388621 TCGAGTTGTC
21388631 CTTGTTTTTGTTTTT
1 CTTGTTTTTGTTTTT
*
21388646 -TTTTTTTTGTGTTTT
1 CTTGTTTTTGT-TTTT
21388661 CTTGTTTTT
1 CTTGTTTTT
21388670 AAATAGCGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 9 0.45
15 4 0.20
16 7 0.35
ACGTcount: A:0.00, C:0.05, G:0.13, T:0.82
Consensus pattern (15 bp):
CTTGTTTTTGTTTTT
Found at i:21389238 original size:58 final size:58
Alignment explanation
Indices: 21389148--21389266 Score: 184
Period size: 58 Copynumber: 2.1 Consensus size: 58
21389138 TGTAAAAGCA
* * *
21389148 ATTTTGTTATGATATAGGGGGCCATAAGGATTAGGGCTCATATTGATATTTGAAGGCC
1 ATTTTGTTATGATATAGGGGGCAATAAGGATTAAGGCTCATATTGATATTCGAAGGCC
* * *
21389206 ATTTTTTTGTGATATAGGGGGCAATAAGGATTAAGGCTCATATTGATATTCGAAGTCC
1 ATTTTGTTATGATATAGGGGGCAATAAGGATTAAGGCTCATATTGATATTCGAAGGCC
21389264 ATT
1 ATT
21389267 GAAGCTGAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.36
Consensus pattern (58 bp):
ATTTTGTTATGATATAGGGGGCAATAAGGATTAAGGCTCATATTGATATTCGAAGGCC
Found at i:21393967 original size:15 final size:15
Alignment explanation
Indices: 21393939--21393972 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
21393929 GTAATTGATG
*
21393939 TGTGGATGACTTGGT
1 TGTGGATGAATTGGT
*
21393954 TGTGGTTGAATTGGT
1 TGTGGATGAATTGGT
21393969 TGTG
1 TGTG
21393973 TGTATATGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGAATTGGT
Found at i:21400476 original size:46 final size:45
Alignment explanation
Indices: 21400426--21400601 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
21400416 TGGTTGAGCA
21400426 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
21400472 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
21400517 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
21400565 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
21400602 GCAGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:21400582 original size:93 final size:93
Alignment explanation
Indices: 21400423--21400594 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
21400413 GGATGGTTGA
* *
21400423 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
21400488 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
21400516 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
21400581 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
21400595 CTTATGGGCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:21404683 original size:40 final size:40
Alignment explanation
Indices: 21404601--21404776 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
21404591 CGGATGATAA
* *
21404601 CCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
21404640 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
21404680 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
21404720 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
21404760 CC-GGCTAAAT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGG
21404777 TACTTGGTTG
Statistics
Matches: 127, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
38 7 0.06
39 23 0.18
40 96 0.76
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:21413221 original size:40 final size:40
Alignment explanation
Indices: 21413116--21413345 Score: 351
Period size: 40 Copynumber: 5.8 Consensus size: 40
21413106 CGGATGATAA
*
21413116 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
*
21413156 CGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
*
21413195 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
*
21413235 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TC
*
21413275 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTAAT-TC
*
21413315 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
21413346 AGCTATATCC
Statistics
Matches: 182, Mismatches: 5, Indels: 7
0.94 0.03 0.04
Matches are distributed among these distances:
39 43 0.24
40 137 0.75
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
Found at i:21413352 original size:40 final size:39
Alignment explanation
Indices: 21413116--21413371 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 39
21413106 CGGATGATAA
*
21413116 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATTC
*
21413156 CGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATTC
21413195 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATTC
21413235 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT-TC
*
21413275 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTAAT-TC
*
21413315 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAT-TC
* *
21413355 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
21413372 TACTTGGTTT
Statistics
Matches: 205, Mismatches: 6, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
39 58 0.28
40 145 0.71
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATTC
Found at i:21421331 original size:39 final size:40
Alignment explanation
Indices: 21421184--21421474 Score: 402
Period size: 40 Copynumber: 7.4 Consensus size: 40
21421174 GATGATAACG
* *
21421184 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
* * *
21421224 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
21421263 GGGCTAAGT-CCGAA-GCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
21421301 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
21421340 GGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
21421379 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
21421419 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
21421459 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
21421475 TACTTGGTTT
Statistics
Matches: 234, Mismatches: 10, Indels: 15
0.90 0.04 0.06
Matches are distributed among these distances:
37 26 0.11
38 12 0.05
39 88 0.38
40 108 0.46
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:21421403 original size:79 final size:79
Alignment explanation
Indices: 21421184--21421474 Score: 398
Period size: 79 Copynumber: 3.7 Consensus size: 79
21421174 GATGATAACG
* *
21421184 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC-GGCTAAGTCCCGAAGGCATTTGTG
* * *
21421249 CTAGTGACTA-ATTC
65 CGAGTTACTATATCC
21421263 GGGCTAAGT-CCGAA-GCATTTGTGCGAGTTACTAATTCCGGCTAAGTCCCGAAGGCATTTGTGC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGCTAAGTCCCGAAGGCATTTGTGC
21421326 GAGTTACTATATCC
66 GAGTTACTATATCC
21421340 GGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC-GGCTAAGTCCCGAAGGCATTTGT
**
21421403 GCGAACTACTATATCC
64 GCGAGTTACTATATCC
* * *
21421419 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT-ATATCCGGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAT-TCCGGCTAAGTCCCGAAGG
21421475 TACTTGGTTT
Statistics
Matches: 195, Mismatches: 10, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
76 32 0.16
77 38 0.19
78 28 0.14
79 74 0.38
80 23 0.12
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGCTAAGTCCCGAAGGCATTTGTGC
GAGTTACTATATCC
Found at i:21424019 original size:40 final size:40
Alignment explanation
Indices: 21423964--21424148 Score: 318
Period size: 40 Copynumber: 4.6 Consensus size: 40
21423954 CGGATGATAA
* *
21423964 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
21424004 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
21424044 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
21424084 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
21424124 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
21424149 AGAGAGTAGC
Statistics
Matches: 139, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
40 138 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:21424167 original size:80 final size:79
Alignment explanation
Indices: 21423960--21424181 Score: 315
Period size: 80 Copynumber: 2.8 Consensus size: 79
21423950 TATTCGGATG
*
21423960 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTAATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAG-CT-ATTCCGGGCTAAGTCCCGAAGGC
21424024 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
21424040 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTAT-TCCGGGCTAAGTCCCGAAGGC
21424104 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
21424120 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGAGAGTAGCTATGTCC-GGCCAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTAT-TCCGGGCTAAGTCCCGAAGG
21424182 TACTTGGTTG
Statistics
Matches: 128, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
79 18 0.14
80 109 0.85
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATTCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:21429195 original size:43 final size:42
Alignment explanation
Indices: 21429090--21429198 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 42
21429080 GACTTGAGAT
* * * *
21429090 TTACATGTAAGACCATGTCTGGGACATTGACATCGTATTTGA
1 TTACATGTAAGACCACGTCTGGGACAGTGACATCATATTCGA
*** * *
21429132 TTTTGTGTAAGACC-CTGTCTGGGACAGTGGCGTCAATATTCGA
1 TTACATGTAAGACCAC-GTCTGGGACAGTGACATC-ATATTCGA
21429175 TTACATGTAAGACCACGTCTGGGA
1 TTACATGTAAGACCACGTCTGGGA
21429199 AGTTGGCATT
Statistics
Matches: 52, Mismatches: 12, Indels: 5
0.75 0.17 0.07
Matches are distributed among these distances:
42 26 0.50
43 25 0.48
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACAGTGACATCATATTCGA
Found at i:21436039 original size:39 final size:39
Alignment explanation
Indices: 21435996--21436143 Score: 95
Period size: 40 Copynumber: 3.7 Consensus size: 39
21435986 TTTAACCGGA
* * *
21435996 TATAGCGACTCGCTCGATTGTCTTCGGGACA-TAGCCCGT
1 TATAGCGACTCGCACAATTGCCTTCGGGA-ATTAGCCCGT
* *
21436035 TATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGAT
1 TATAGCGACTCGCACAATTGCCTTCGGGAATTAGCCC-G-T
*** * *
21436076 T-TAATAACTCGCACGAA-TGCCTTCGGGACTTAACCCGGT
1 TATAGCGACTCGCAC-AATTGCCTTCGGGAATTAGCCC-GT
* * ** *
21436115 TTTGGTAACTCGCACAAATGCCTTCGGGA
1 TATAGCGACTCGCACAATTGCCTTCGGGA
21436144 GTTGACCGGA
Statistics
Matches: 91, Mismatches: 12, Indels: 11
0.80 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 34 0.37
40 52 0.57
41 4 0.04
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (39 bp):
TATAGCGACTCGCACAATTGCCTTCGGGAATTAGCCCGT
Found at i:21436099 original size:40 final size:40
Alignment explanation
Indices: 21436017--21436193 Score: 173
Period size: 40 Copynumber: 4.5 Consensus size: 40
21436007 GCTCGATTGT
* * * *
21436017 CTTCGGGACATAGCCC-G-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* * *
21436056 CTTCGGGAATTAGCCCGGATTTAATAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
21436096 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
21436136 CTTCGGGAGTT-GACCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACAAATGC
21436176 CTTC-GGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
21436194 CACCATTCGA
Statistics
Matches: 111, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 30 0.27
40 79 0.71
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:21436153 original size:79 final size:80
Alignment explanation
Indices: 21436044--21436192 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
21436034 TTATAGTGAT
* * * * *
21436044 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC-TCGCACGAATGCCTTCGGGACTTA
1 TCGCACAAATGCCTTCGGGAATTAGACCGGATTTAATAACTTAGCACAAAAGCCTTC-GGACTTA
21436108 ACCCGGTTTTGGTAAC
65 ACCCGGTTTTGGTAAC
* * * *
21436124 TCGCACAAATGCCTTCGGGAGTT-GACCGGATTTAGTCACTTAGCACAAAAGCCTTCGGACTTAG
1 TCGCACAAATGCCTTCGGGAATTAGACCGGATTTAATAACTTAGCACAAAAGCCTTCGGACTTAA
21436188 CCCGG
66 CCCGG
21436193 ACACCATTCG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
79 25 0.42
80 34 0.58
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
TCGCACAAATGCCTTCGGGAATTAGACCGGATTTAATAACTTAGCACAAAAGCCTTCGGACTTAA
CCCGGTTTTGGTAAC
Found at i:21444094 original size:40 final size:40
Alignment explanation
Indices: 21444045--21444197 Score: 105
Period size: 40 Copynumber: 3.9 Consensus size: 40
21444035 TCGAATTTAA
* * *
21444045 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACA-TAGC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGA-ATTAGC
* * *
21444085 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
* *** * *
21444125 CCGGATTTAATAACTCGCACGAA-TGCCTTC-GGACTTAAC
1 CCGGATATAGCGACTCGCAC-AATTGCCTTCGGGAATTAGC
* * * ** *
21444164 CCGGTTTTGGTAACTCGCACAAATGCCTTCGGGA
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGA
21444198 GTTGACCCGG
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.34
40 57 0.61
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
Found at i:21444178 original size:39 final size:40
Alignment explanation
Indices: 21444071--21444246 Score: 160
Period size: 40 Copynumber: 4.4 Consensus size: 40
21444061 GCTCGATTGT
* * * * *
21444071 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGC
* * * *
21444111 CTTCGGGAATTAGCCCGGATTTAATAACTCGCACGAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* *
21444151 CTTC-GGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * * * *
21444190 CTTCGGGAGTTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
*
21444231 CTTC-GGACTTAGCCCG
1 CTTCGGGACTTAACCCG
21444247 ACACCATTCG
Statistics
Matches: 110, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
39 33 0.30
40 61 0.55
41 16 0.15
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:21444194 original size:79 final size:80
Alignment explanation
Indices: 21444099--21444246 Score: 201
Period size: 79 Copynumber: 1.9 Consensus size: 80
21444089 TTATAGTGAT
* * * *
21444099 TCGCACAATTGCCTTCGGGAATT-AGCCCGGATTTAATAAC-TCGCACGAATGCCTTCGGACTTA
1 TCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAATAACTTAGCACAAAAGCCTTCGGACTTA
21444162 ACCCGGTTTTGGTAAC
65 ACCCGGTTTTGGTAAC
* * * *
21444178 TCGCACAAATGCCTTCGGGAGTTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGACTTAG
1 TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAATAACTTAGCACAAAAGCCTTCGGACTTAA
21444243 CCCG
66 CCCG
21444247 ACACCATTCG
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
79 34 0.58
80 25 0.42
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
TCGCACAAATGCCTTCGGGAATTGACCCGGATTTAATAACTTAGCACAAAAGCCTTCGGACTTAA
CCCGGTTTTGGTAAC
Found at i:21446929 original size:26 final size:26
Alignment explanation
Indices: 21446893--21446965 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
21446883 CTGTTCTGTC
21446893 AAAATGACTGTTATACCCCTAGAGGT
1 AAAATGACTGTTATACCCCTAGAGGT
21446919 AAAATGACTGTTATACCCCTAGAGGT
1 AAAATGACTGTTATACCCCTAGAGGT
*
21446945 AAAATGACTGATATACCCCTA
1 AAAATGACTGTTATACCCCTA
21446966 TGCTATATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (26 bp):
AAAATGACTGTTATACCCCTAGAGGT
Found at i:21453439 original size:42 final size:42
Alignment explanation
Indices: 21453376--21453529 Score: 164
Period size: 42 Copynumber: 3.6 Consensus size: 42
21453366 ACTAAGTCTA
* * *
21453376 CGTGTAAGACCATATCTGGGATATGGCATCGATATGATATTT
1 CGTGTAAGACCATATTTGGGATATGGCATCAATATGAGATTT
* * * * *
21453418 TGTTTAAGACCACATTTGGGATGTGGCATTAATATGAGATTT
1 CGTGTAAGACCATATTTGGGATATGGCATCAATATGAGATTT
* * * * **
21453460 CGTGTAAGACCATAGTTGGGCTATTGGCATCTATACGAGATCC
1 CGTGTAAGACCATATTTGGGATA-TGGCATCAATATGAGATTT
*
21453503 CATGTAAGACCATATTTGGGATATGGC
1 CGTGTAAGACCATATTTGGGATATGGC
21453530 GTTGGTATTG
Statistics
Matches: 89, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
42 55 0.62
43 34 0.38
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATATTTGGGATATGGCATCAATATGAGATTT
Found at i:21454721 original size:20 final size:20
Alignment explanation
Indices: 21454692--21454745 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
21454682 CATGGCCTGC
*
21454692 CCACATGGGCGTGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
*
21454712 CCACACGGGCATGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
21454732 CCACACGGGCGTGT
1 CCACACGGGCGTGT
21454746 GGCTCTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.20, C:0.37, G:0.30, T:0.13
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAG
Found at i:21460114 original size:40 final size:40
Alignment explanation
Indices: 21460050--21460240 Score: 199
Period size: 39 Copynumber: 4.8 Consensus size: 40
21460040 GCTACTCGTT
* * * ***
21460050 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
21460090 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
21460130 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
21460169 CCATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
21460208 CAATTGCCTTCGGG-CTTAGCACGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
21460241 TTCGCACATT
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.66
40 45 0.34
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:21460167 original size:39 final size:39
Alignment explanation
Indices: 21460086--21460248 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
21460076 TATGGTAACC
* *
21460086 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
21460126 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
21460165 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* * *
21460204 CGTACAATTGCCTTCGGGCTTAGCACGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
21460243 CGCACA
1 CGCACA
21460249 TTCATACACA
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 94 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:21463257 original size:17 final size:18
Alignment explanation
Indices: 21463230--21463263 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
21463220 TATTGAAAGG
21463230 AAAAGCAAAACCAAAAAC
1 AAAAGCAAAACCAAAAAC
21463248 AAAA-CAAAACCAAAAA
1 AAAAGCAAAACCAAAAA
21463264 GTACCCAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.76, C:0.21, G:0.03, T:0.00
Consensus pattern (18 bp):
AAAAGCAAAACCAAAAAC
Found at i:21463331 original size:19 final size:21
Alignment explanation
Indices: 21463307--21463346 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
21463297 AGAAGAAAAA
21463307 AATGAAGA-AAAAACC-GAAG
1 AATGAAGAGAAAAACCAGAAG
21463326 AATGAAGAGAAAAACCAGAAG
1 AATGAAGAGAAAAACCAGAAG
21463347 GAAAAATTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.42
20 7 0.37
21 4 0.21
ACGTcount: A:0.62, C:0.10, G:0.23, T:0.05
Consensus pattern (21 bp):
AATGAAGAGAAAAACCAGAAG
Found at i:21467196 original size:40 final size:40
Alignment explanation
Indices: 21467151--21467317 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
21467141 CGGAATATAA
21467151 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
21467191 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
21467231 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
21467271 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
21467310 CCGGATAT
1 CCGGATAT
21467318 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:21467301 original size:80 final size:79
Alignment explanation
Indices: 21467151--21467317 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
21467141 CGGAATATAA
* *
21467151 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
21467216 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
21467231 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
21467293 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
21467310 CCGGATAT
1 CCGGATAT
21467318 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:21468167 original size:17 final size:19
Alignment explanation
Indices: 21468144--21468189 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
21468134 AAGAAGCATG
21468144 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
21468162 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
21468180 AATCATGCTC
1 AATCATGCTC
21468190 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:21475174 original size:40 final size:39
Alignment explanation
Indices: 21475129--21475294 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
21475119 CGGAATATAA
21475129 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGG-CTTAGC
* * * *
21475169 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
** * *
21475208 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-CTTAGC
** * * * *
21475248 CCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
21475287 CCGGATAT
1 CCGGATAT
21475295 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGCTTAGC
Found at i:21475251 original size:79 final size:79
Alignment explanation
Indices: 21475145--21475294 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
21475135 ATAATCACGT
*
21475145 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAAC-CAGCA-GAATTGCCTTCGGGCTTAGC
21475208 CCGGATATAGCCACTA
64 CCGGATATAGCCACTA
* * ** * *
21475224 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATTGTCTTCGGGCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
21475289 GGATAT
66 GGATAT
21475295 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACCAGCAGAATTGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:21483158 original size:40 final size:40
Alignment explanation
Indices: 21483113--21483279 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
21483103 CGGAATATAA
21483113 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
21483153 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
21483193 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
21483233 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
21483272 CCGGATAT
1 CCGGATAT
21483280 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:21483263 original size:80 final size:79
Alignment explanation
Indices: 21483113--21483279 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
21483103 CGGAATATAA
* *
21483113 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
21483178 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
21483193 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
21483255 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
21483272 CCGGATAT
1 CCGGATAT
21483280 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:21484128 original size:17 final size:19
Alignment explanation
Indices: 21484105--21484150 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
21484095 AAGAAGCATG
21484105 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
21484123 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
21484141 AATCATGCTC
1 AATCATGCTC
21484151 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:21486383 original size:40 final size:40
Alignment explanation
Indices: 21486300--21486519 Score: 268
Period size: 40 Copynumber: 5.5 Consensus size: 40
21486290 ACCCAAGTAT
** * *
21486300 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
21486338 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
21486378 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
21486418 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
21486458 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
21486498 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
21486520 CATTCGAATA
Statistics
Matches: 156, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 127 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:21507188 original size:22 final size:22
Alignment explanation
Indices: 21507151--21507194 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
21507141 TAGGAATTAG
21507151 GGTGTGTCGTTTTCTCT-TTTT
1 GGTGTGTCGTTTTCTCTCTTTT
*
21507172 GGTGTAGTCTTTTTCTCTCTTTT
1 GGTGT-GTCGTTTTCTCTCTTTT
21507195 CTTTTCCAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.02, C:0.16, G:0.20, T:0.61
Consensus pattern (22 bp):
GGTGTGTCGTTTTCTCTCTTTT
Found at i:21508392 original size:9 final size:10
Alignment explanation
Indices: 21508380--21508436 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
21508370 TACGTGGGAT
21508380 ATGATAT-AC
1 ATGATATGAC
21508389 ATGAT-TGAC
1 ATGATATGAC
21508398 ATGATATGCAC
1 ATGATATG-AC
*
21508409 ATGATATG-T
1 ATGATATGAC
21508418 ATGATATGCAC
1 ATGATATG-AC
*
21508429 ATTATATG
1 ATGATATG
21508437 TATGAAATGC
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
8 1 0.03
9 20 0.50
10 2 0.05
11 17 0.43
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:21508412 original size:20 final size:20
Alignment explanation
Indices: 21508398--21508453 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
21508388 CATGATTGAC
21508398 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
*
21508418 ATGATATGCACATTATATGT
1 ATGATATGCACATGATATGT
*
21508438 ATGAAATGCACATGAT
1 ATGATATGCACATGAT
21508454 GTAATCGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:21508548 original size:26 final size:26
Alignment explanation
Indices: 21508503--21508636 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
21508493 GAGGAAGTGC
21508503 AAAAGGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
21508528 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
21508554 AAAAGGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
21508580 AAAAGGGCTT-TGCCCCAGTTTA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
21508604 AAAAGGACTT-TACCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
21508627 AAAAGAGGCT
1 AAAAG-GGCT
21508637 AGGCCTCCAG
Statistics
Matches: 98, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
23 8 0.08
24 21 0.21
25 19 0.19
26 50 0.51
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:21516549 original size:11 final size:11
Alignment explanation
Indices: 21516533--21516590 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
21516523 TACCTGATTG
21516533 ACATGATATGC
1 ACATGATATGC
21516544 ACATGATATG-
1 ACATGATATGC
*
21516554 -TATGATATGC
1 ACATGATATGC
21516564 ACATGATATG-
1 ACATGATATGC
* *
21516574 -TATGAAATGC
1 ACATGATATGC
21516584 ACATGAT
1 ACATGAT
21516591 GTAATCATAA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
9 15 0.41
11 22 0.59
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (11 bp):
ACATGATATGC
Found at i:21516558 original size:20 final size:20
Alignment explanation
Indices: 21516535--21516590 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
21516525 CCTGATTGAC
21516535 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
21516555 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
*
21516575 ATGAAATGCACATGAT
1 ATGATATGCACATGAT
21516591 GTAATCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:21516685 original size:26 final size:25
Alignment explanation
Indices: 21516640--21516746 Score: 116
Period size: 26 Copynumber: 4.4 Consensus size: 25
21516630 GAGGAAGTGC
21516640 AAAAGGGC-TATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
*
21516664 GAAAAGGGCTTATGCCCGAGTTTATT
1 -AAAAGGGCTTATGCCCCAGTTTATT
* *
21516690 GAAAAGGG-TTTTGCCCTAGTTTA-T
1 -AAAAGGGCTTATGCCCCAGTTTATT
*
21516714 CAAAGGGCTT-TGCCCCAG-TTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
21516737 AAAAGAGGCT
1 AAAAG-GGCT
21516747 AGGCCTCTAG
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
22 3 0.04
23 18 0.25
24 7 0.10
25 21 0.29
26 23 0.32
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTTATT
Found at i:21516757 original size:48 final size:49
Alignment explanation
Indices: 21516640--21516758 Score: 118
Period size: 51 Copynumber: 2.4 Consensus size: 49
21516630 GAGGAAGTGC
* * * *
21516640 AAAAGGGCTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCGAGTTTATTG
1 AAAAGGGCTAGGCCCTAGTTTA-T-CAAAGGGCTTATGCCCCAGTTTATTG
* **
21516691 AAAAGGGTTTTGCCCTAGTTTATCAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTAGGCCCTAGTTTATCAAAGGGCTTATGCCCCAGTTTATTG
21516737 AAAAGAGGCTAGGCCTCTAGTT
1 AAAAG-GGCTAGGCC-CTAGTT
21516759 ATATGATAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
46 5 0.09
47 11 0.19
48 13 0.22
49 9 0.16
50 1 0.02
51 19 0.33
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
AAAAGGGCTAGGCCCTAGTTTATCAAAGGGCTTATGCCCCAGTTTATTG
Found at i:21523149 original size:29 final size:29
Alignment explanation
Indices: 21523117--21523175 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
21523107 ACCCATACCT
*
21523117 AAGAAGGTGGGACGATTTTAAGCTTTAAA
1 AAGAAGGTAGGACGATTTTAAGCTTTAAA
*
21523146 AAGATGGTAGGACGATTTTAAGCTTTAAA
1 AAGAAGGTAGGACGATTTTAAGCTTTAAA
21523175 A
1 A
21523176 TCTTTTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (29 bp):
AAGAAGGTAGGACGATTTTAAGCTTTAAA
Found at i:21526056 original size:19 final size:19
Alignment explanation
Indices: 21526029--21526065 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
21526019 TGGCTAAATG
*
21526029 TTTTCTTATTCAATCTTGC
1 TTTTATTATTCAATCTTGC
*
21526048 TTTTATTATTTAATCTTG
1 TTTTATTATTCAATCTTG
21526066 GGGTTTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.14, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTTATTATTCAATCTTGC
Found at i:21529563 original size:40 final size:41
Alignment explanation
Indices: 21529466--21529568 Score: 120
Period size: 42 Copynumber: 2.5 Consensus size: 41
21529456 GAGAATTAGG
* * *
21529466 TGTAAGACCATGTCTGGGACATAGGCATCGTATCTGATTTCG
1 TGTAAGACCATGTCTGGGACAGAGGCATCGTATCTGA-TACA
* * *
21529508 TGTAAAACCTTGTCTGGGATAGAGGCATCG-ATACTG-TACA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGTAT-CTGATACA
21529548 TGTAAGACCATGTCTGGGACA
1 TGTAAGACCATGTCTGGGACA
21529569 TCGATATTGT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
40 20 0.39
41 2 0.04
42 29 0.57
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACAGAGGCATCGTATCTGATACA
Found at i:21531944 original size:13 final size:13
Alignment explanation
Indices: 21531926--21531952 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21531916 GGAGTAATCG
21531926 CACACGGGCATGT
1 CACACGGGCATGT
21531939 CACACGGGCATGT
1 CACACGGGCATGT
21531952 C
1 C
21531953 CTTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Found at i:21544706 original size:47 final size:47
Alignment explanation
Indices: 21544653--21545086 Score: 553
Period size: 47 Copynumber: 9.1 Consensus size: 47
21544643 TTAGGATTTT
* *
21544653 ATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
21544700 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * *
21544747 ATGTGATGAATGTGAACCTGTATATATATGCGTAATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
21544798 ATGTGATGAATGTGAACATGCGTATGTGCGATAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
21544845 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * * *
21544892 ATGTGATGAATGTGAACCTTTATATATATGCGTAATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
21544943 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
21544990 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * * * *
21545037 AGGTGATGAACGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
21545084 ATG
1 ATG
21545087 CAAAATATGT
Statistics
Matches: 338, Mismatches: 41, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
47 254 0.75
48 2 0.01
50 2 0.01
51 80 0.24
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:21544802 original size:98 final size:94
Alignment explanation
Indices: 21544653--21545086 Score: 562
Period size: 98 Copynumber: 4.5 Consensus size: 94
21544643 TTAGGATTTT
* * * *
21544653 ATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
21544718 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* *
21544747 ATGTGATGAATGTGAACCTGTATATATATGCGTAATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACATG--CATATATGCG--ATAAGGCCGAATGGCCAATGTGATGAATGTG
* * *
21544812 AACATGCGTATGTGCGATAAAGCCGAATGGCCA
62 AACATGCATATGTGTGATAAGGCCGAATGGCCA
*
21544845 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
** * * *
21544910 TTTATATATATGCGTAATAAGGCCAAATGGCCA
65 ---ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
21544943 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
21545008 TGCATATATGAGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * * * * *
21545037 AGGTGATGAACGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATG
21545087 CAAAATATGT
Statistics
Matches: 295, Mismatches: 37, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
94 116 0.39
95 1 0.00
96 14 0.05
97 1 0.00
98 163 0.55
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:21544805 original size:145 final size:145
Alignment explanation
Indices: 21544653--21545086 Score: 723
Period size: 145 Copynumber: 3.0 Consensus size: 145
21544643 TTAGGATTTT
* *
21544653 ATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
21544718 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTAAT
66 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTAAT
21544783 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
*
21544798 ATGTGATGAATGTGAACATGCGTATGTGCGATAAAGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
21544863 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTTTATATATATGCGTAAT
66 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTAAT
*
21544928 AAGGCCAAATGGCCA
131 AAGGCCGAATGGCCA
21544943 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
21545008 TGCATATATGAGATAAGGCCGAATGGCCAAGGTGATGAACGTGAACATGTATATATGTG-G---T
66 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTAAT
*
21545069 AAGGCCGAATGGCTA
131 AAGGCCGAATGGCCA
21545084 ATG
1 ATG
21545087 CAAAATATGT
Statistics
Matches: 273, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
141 17 0.06
144 1 0.00
145 255 0.93
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (145 bp):
ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTAAT
AAGGCCGAATGGCCA
Found at i:21545196 original size:46 final size:46
Alignment explanation
Indices: 21545060--21545196 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
21545050 GAACATGTAT
* * *
21545060 ATATGTGGTAAGGCCGAATGGCTAATGCAAAATATGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* * *
21545106 ATATGAGATAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
* * *
21545152 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATG
21545197 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.37, C:0.09, G:0.28, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:21546739 original size:40 final size:40
Alignment explanation
Indices: 21546684--21546835 Score: 250
Period size: 40 Copynumber: 3.8 Consensus size: 40
21546674 GAGAATTGAG
21546684 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
21546724 AGTGATGTACCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
21546764 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
21546804 AGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATACCCGGGCTAAGTCCCGAAGAGCA
21546836 ATCATGCTGG
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:21551112 original size:47 final size:47
Alignment explanation
Indices: 21551059--21551492 Score: 526
Period size: 47 Copynumber: 9.1 Consensus size: 47
21551049 TTAGGATTTT
** *
21551059 ATGTGATGAATGTGAACACACGTATGTGTGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
21551106 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *** * *
21551153 ATGTGATGAATGTAAACCTGTATATATATGCGTAATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
21551204 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
21551251 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** * *
21551298 ATGTGATGAATGTGAACCTGTATATATATGCGTAATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
21551349 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
21551396 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * ** * * *
21551443 ATGTGATGAACGTGACCATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
21551490 ATG
1 ATG
21551493 CGAAATGTCT
Statistics
Matches: 337, Mismatches: 42, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
47 253 0.75
48 2 0.01
50 2 0.01
51 80 0.24
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:21551207 original size:98 final size:94
Alignment explanation
Indices: 21551059--21551492 Score: 544
Period size: 98 Copynumber: 4.5 Consensus size: 94
21551049 TTAGGATTTT
** * * * *
21551059 ATGTGATGAATGTGAACACACGTATGTGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
21551124 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * *
21551153 ATGTGATGAATGTAAACCTGTATATATATGCGTAATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACATG--CATATATGCG--ATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
21551218 AACATGCGTATGTGCGATAAGGCCGAATGGCCA
62 AACATGCATATGTGTGATAAGGCCGAATGGCCA
*
21551251 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
** * *
21551316 TGTATATATATGCGTAATAAGGCCGAATGGCCA
65 ---ATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
21551349 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCTGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
21551414 TGCATATATGAGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* * * * * *
21551443 ATGTGATGAACGTGACCATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATG
21551493 CGAAATGTCT
Statistics
Matches: 293, Mismatches: 39, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
94 114 0.39
95 1 0.00
96 14 0.05
97 1 0.00
98 163 0.56
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:21551322 original size:145 final size:145
Alignment explanation
Indices: 21551059--21551492 Score: 716
Period size: 145 Copynumber: 3.0 Consensus size: 145
21551049 TTAGGATTTT
** * *
21551059 ATGTGATGAATGTGAACACACGTATGTGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
21551124 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAACCTGTATATATATGCGTAAT
66 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTAAT
21551189 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
21551204 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
21551269 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTAAT
66 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTAAT
21551334 AAGGCCGAATGGCCA
131 AAGGCCGAATGGCCA
*
21551349 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCTGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
21551414 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAACGTG-ACCATGTATATATGTG-G---
66 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC-TGTATATATATGCGTAA
*
21551474 TAAGGCCGAATGGCTA
130 TAAGGCCGAATGGCCA
21551490 ATG
1 ATG
21551493 CGAAATGTCT
Statistics
Matches: 276, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
141 18 0.07
144 4 0.01
145 254 0.92
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (145 bp):
ATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATGCGTAAT
AAGGCCGAATGGCCA
Found at i:21551596 original size:46 final size:46
Alignment explanation
Indices: 21551466--21551602 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
21551456 GACCATGTAT
* * *
21551466 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTCTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
21551512 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
21551558 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
21551603 TGTATATATA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.35, C:0.09, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:21555319 original size:43 final size:45
Alignment explanation
Indices: 21555215--21555342 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 45
21555205 AGGTTACTGA
* * * *
21555215 AATGTGATTACATGTAAGACCATGTCTAGAACATTGGCAT--TAT
1 AATGAGATTACGTATAAGACCATGTCTAGGACATTGGCATCGTAT
* * *
21555258 ATTGAGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-T
1 AATGAGATTACGTATAAGACCATGTCTAGGACATTGGCATCGTAT
* * * * *
21555302 AAT-CGATTTCGTATAAGACCCTATCTAGGACAGTGGCATCG
1 AATGAGATTACGTATAAGACCATGTCTAGGACATTGGCATCG
21555343 ATATGTGATA
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 66 0.94
44 3 0.04
45 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (45 bp):
AATGAGATTACGTATAAGACCATGTCTAGGACATTGGCATCGTAT
Found at i:21560061 original size:28 final size:28
Alignment explanation
Indices: 21560021--21560090 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
21560011 ATGAAAATTT
** *
21560021 CACTAAGCATGCGAGTTTGGTTAAT-GAG
1 CACTAAGTGTGCGAGTTTGATT-ATCGAG
21560049 CACTAAGTGTGCGAGTTTGATTATCGAG
1 CACTAAGTGTGCGAGTTTGATTATCGAG
21560077 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
21560091 AGGAAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.05
28 36 0.95
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATTATCGAG
Found at i:21563261 original size:29 final size:29
Alignment explanation
Indices: 21563227--21563358 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
21563217 TACTCGATTT
** * *
21563227 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
21563256 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
21563285 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
21563314 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
21563343 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
21563359 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:21571199 original size:29 final size:29
Alignment explanation
Indices: 21571165--21571296 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
21571155 TACTCGATTT
** * *
21571165 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
21571194 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
21571223 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
21571252 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
21571281 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
21571297 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:21577381 original size:43 final size:43
Alignment explanation
Indices: 21577284--21577454 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 43
21577274 ACTGAGATGT
* * *
21577284 GATTACATGTAAGACCATGTCAGGGACATTGGCATTGTTTTGA
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTTATGA
* *
21577327 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTAAT-C
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTT-ATGA
* * * * ** * *
21577370 GATTTCCTGTAAGACCCTATCTGGGACAGTGGCACCGATATGT
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTTATGA
* * * * *
21577413 GATAACATGTAAGACCATATTTGGGATA-TGGCATTG-TATGA
1 GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTTATGA
21577454 G
1 G
21577455 CCGTGGGTGG
Statistics
Matches: 104, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
41 5 0.05
42 8 0.08
43 90 0.87
44 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (43 bp):
GATTACCTGTAAGACCATGTCTGGGACATTGGCATTGTTATGA
Found at i:21581879 original size:47 final size:49
Alignment explanation
Indices: 21581802--21582164 Score: 226
Period size: 46 Copynumber: 7.7 Consensus size: 49
21581792 AAGGTATAAT
*
21581802 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
* * * *
21581849 GTCGATGCCATGTCCCAGACAAGGTATTACACTGACT-ATCGAAATCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-AAATCGAA
* * * *
21581898 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATC--C
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-A-ATCGAA
* * * *
21581946 GTGCTGATGCCATGTCCCAGACATGGTCGTACACTGACACATC---TCGTA
1 GT-C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
* * * ** *
21581994 GTCGATG-CATGTCCCTGACAT-GTCTTACATTGGCTTA-CATCTCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
* * * ***
21582040 GTTGATG-CATGTCCCAGACAT-GTCCTACACTAGCTC-TCGTCTC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
* * * * * **
21582085 TGCCAATGCCATGTCCCAGAAAGGGTCTTACAATGGCTC-TCATAAT-GTG
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-AATCGAA
*
21582134 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACT
21582165 AGTGCACAAC
Statistics
Matches: 244, Mismatches: 52, Indels: 41
0.72 0.15 0.12
Matches are distributed among these distances:
43 1 0.00
44 11 0.05
45 14 0.06
46 60 0.25
47 59 0.24
48 27 0.11
49 37 0.15
50 33 0.14
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCGAA
Found at i:21581916 original size:49 final size:47
Alignment explanation
Indices: 21581808--21581988 Score: 159
Period size: 49 Copynumber: 3.7 Consensus size: 47
21581798 TAATGTCGAT
* * * *
21581808 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGCCGAC
* * *
21581855 GCCATGTCCCAGACAAGGTATTACACTGACT-ATCGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AAGCCGAC
* ** * *
21581904 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATATCCGTGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACT-G-ACTCATCA-AT-CAAGCCGAC
* *
21581954 GCCATGTCCCAGACATGGTCGTACACTGACACATC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC
21581989 TCGTAGTCGA
Statistics
Matches: 108, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
46 3 0.03
47 28 0.26
48 6 0.06
49 33 0.31
50 33 0.31
51 4 0.04
52 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGCCGAC
Found at i:21581983 original size:99 final size:96
Alignment explanation
Indices: 21581808--21581983 Score: 248
Period size: 96 Copynumber: 1.8 Consensus size: 96
21581798 TAATGTCGAT
*
21581808 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAGACAAGG
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAGACAAGG
*
21581873 TATTACACTGACTATCGAAATCGAGGCCGAC
66 TAGTACACTGACTATCGAAATCGAGGCCGAC
*
21581904 GCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACAT-ATCCGTGCTGATGCCATGTCCCAGA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCATC-CATCA--AGT-C-GATGCCATGTCCCAGA
* *
21581967 CATGGTCGTACACTGAC
61 CAAGGTAGTACACTGAC
21581984 ACATCTCGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
95 3 0.04
96 34 0.49
97 2 0.03
98 1 0.01
99 30 0.43
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (96 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAGACAAGG
TAGTACACTGACTATCGAAATCGAGGCCGAC
Found at i:21588166 original size:29 final size:30
Alignment explanation
Indices: 21588107--21588167 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
21588097 AGCTGGAGCT
* * *
21588107 ATCCCTTTCCATTATTTTATGGTTGTAACC
1 ATCCCTTTCCATTAGTTGATGGTCGTAACC
* *
21588137 ATCCCTTTTCATT-GTTGATGGTCGTCACC
1 ATCCCTTTCCATTAGTTGATGGTCGTAACC
21588166 AT
1 AT
21588168 TGTGATAACC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.18, C:0.25, G:0.13, T:0.44
Consensus pattern (30 bp):
ATCCCTTTCCATTAGTTGATGGTCGTAACC
Found at i:21590908 original size:30 final size:30
Alignment explanation
Indices: 21590821--21590896 Score: 109
Period size: 30 Copynumber: 2.6 Consensus size: 30
21590811 GGGACATTAC
* *
21590821 AACC-ATCCCTTTCCATAATTTGATAGCCG
1 AACCTATCCCTTTTCATAATTTGATAGTCG
*
21590850 AACCTATCCCTTTTCACAATTTGATAGTCG
1 AACCTATCCCTTTTCATAATTTGATAGTCG
*
21590880 AAGCTATCCCTTTTCAT
1 AACCTATCCCTTTTCAT
21590897 TATTGAATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 4 0.10
30 37 0.90
ACGTcount: A:0.26, C:0.29, G:0.09, T:0.36
Consensus pattern (30 bp):
AACCTATCCCTTTTCATAATTTGATAGTCG
Found at i:21591184 original size:2 final size:2
Alignment explanation
Indices: 21591177--21591206 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
21591167 AACTAAATAC
21591177 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21591207 CCTTCTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21592586 original size:42 final size:42
Alignment explanation
Indices: 21592471--21592597 Score: 150
Period size: 41 Copynumber: 3.1 Consensus size: 42
21592461 TAGAGCCTAG
* * * *
21592471 TATAATACACCGGCA-CAGAGCTTGCTAAGCAATAAACTTGA
1 TATAATACACCGGCATCAAAGCCTGCTAAGCAATAAGCCTGA
* * *
21592512 TTTAATACACCAGCAT-AAAGCCTGCTATGCAATAAGCCTGA
1 TATAATACACCGGCATCAAAGCCTGCTAAGCAATAAGCCTGA
* * *
21592553 TATCATACACTGGCATCAAAGCCTGCTAGGCAATAAGCCTGA
1 TATAATACACCGGCATCAAAGCCTGCTAAGCAATAAGCCTGA
21592595 TAT
1 TAT
21592598 TATATCACTG
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
41 45 0.62
42 27 0.38
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (42 bp):
TATAATACACCGGCATCAAAGCCTGCTAAGCAATAAGCCTGA
Found at i:21593103 original size:29 final size:27
Alignment explanation
Indices: 21593065--21593124 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 27
21593055 CAAATCCATA
*
21593065 AATTTCATTTATTTTACATTTTAGTCCCT
1 AATTTCATTT-TTTTACAATTTAG-CCCT
*
21593094 CAATTT-ATTTTTTTGCAATTTAGCCCT
1 -AATTTCATTTTTTTACAATTTAGCCCT
21593121 AATT
1 AATT
21593125 ATTCAAATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 4 0.14
27 4 0.14
28 11 0.39
29 4 0.14
30 5 0.18
ACGTcount: A:0.25, C:0.17, G:0.05, T:0.53
Consensus pattern (27 bp):
AATTTCATTTTTTTACAATTTAGCCCT
Found at i:21593866 original size:31 final size:31
Alignment explanation
Indices: 21593814--21593888 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
21593804 TACGGTTACC
*
21593814 ATCCCTTTTTA-TAATTTGATAGCC-AAGGCT
1 ATCCCTTTTCATTAATTTGATAGCCGAA-GCT
*
21593844 ATCCCTTTTCATTATTTTGATAGCCGAAGCT
1 ATCCCTTTTCATTAATTTGATAGCCGAAGCT
21593875 ATCCCTTTTCATTA
1 ATCCCTTTTCATTA
21593889 GCCGATAATC
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
30 10 0.24
31 29 0.71
32 2 0.05
ACGTcount: A:0.24, C:0.23, G:0.11, T:0.43
Consensus pattern (31 bp):
ATCCCTTTTCATTAATTTGATAGCCGAAGCT
Found at i:21595603 original size:20 final size:20
Alignment explanation
Indices: 21595575--21595613 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
21595565 CAACGTACAT
* *
21595575 TTCACATACAATTTAATCAA
1 TTCAAATACAATTCAATCAA
21595595 TTCAAATACAATTCAATCA
1 TTCAAATACAATTCAATCA
21595614 CAACCAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
TTCAAATACAATTCAATCAA
Found at i:21597077 original size:2 final size:2
Alignment explanation
Indices: 21597070--21597112 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
21597060 CATAAGCATC
21597070 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21597112 A
1 A
21597113 CGTATACACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:21597171 original size:49 final size:50
Alignment explanation
Indices: 21597096--21597196 Score: 177
Period size: 49 Copynumber: 2.0 Consensus size: 50
21597086 ATATATATAT
*
21597096 ATATATATATATATATACGTATACACTTTCATTGTAAACCAAACCATAATG
1 ATATATATATATATATAC-TACACACTTTCATTGTAAACCAAACCATAATG
21597147 ATATATATATATATATA-TACACACTTTCATTGTAAACCAAACCATAATG
1 ATATATATATATATATACTACACACTTTCATTGTAAACCAAACCATAATG
21597196 A
1 A
21597197 CAAGCATATT
Statistics
Matches: 49, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
49 32 0.65
51 17 0.35
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.35
Consensus pattern (50 bp):
ATATATATATATATATACTACACACTTTCATTGTAAACCAAACCATAATG
Found at i:21598238 original size:50 final size:50
Alignment explanation
Indices: 21598184--21598279 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
21598174 TAACACCACG
* *
21598184 TAAATACTTACCTATATAACCGAATATACAAGGTCCAATATATCATATCA
1 TAAATACTTACATATATAACCGAATACACAAGGTCCAATATATCATATCA
* ** * *
21598234 TAAATACTTACATGTATGGCCGAATACACAAGGTTCATTATATCAT
1 TAAATACTTACATATATAACCGAATACACAAGGTCCAATATATCAT
21598280 CACATATGGC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (50 bp):
TAAATACTTACATATATAACCGAATACACAAGGTCCAATATATCATATCA
Done.