Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 72 of 292
Found at i:21856680 original size:24 final size:24
Alignment explanation
Indices: 21856652--21856789 Score: 119
Period size: 24 Copynumber: 5.9 Consensus size: 24
21856642 AAGCTCCTCC
21856652 TGAGCTGATAAACAGT-AGCTCTAT
1 TGAGCTGAT-AACAGTAAGCTCTAT
* *
21856676 TGAGCTGGTAATAGTAAGCTCTAT
1 TGAGCTGATAACAGTAAGCTCTAT
*
21856700 TGAGCTGGTAACAGTAAGCTCTAT
1 TGAGCTGATAACAGTAAGCTCTAT
*
21856724 TAAGCTG--AACAGTAAGCTCT-T
1 TGAGCTGATAACAGTAAGCTCTAT
* * *
21856745 TCAAGCT-A-AATCAGTAAGCTCCAA
1 T-GAGCTGATAA-CAGTAAGCTCTAT
* *
21856769 TGAGCTTA-AATAGTAAGCTCT
1 TGAGCTGATAACAGTAAGCTCT
21856790 TACGAGCTGT
Statistics
Matches: 99, Mismatches: 9, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.02
22 20 0.20
23 28 0.28
24 49 0.49
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (24 bp):
TGAGCTGATAACAGTAAGCTCTAT
Found at i:21856796 original size:23 final size:24
Alignment explanation
Indices: 21856733--21856797 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 24
21856723 TTAAGCTGAA
* *
21856733 CAGTAAGCTCTTTCAAGC-TAAAT
1 CAGTAAGCTCTTACGAGCTTAAAT
** *
21856756 CAGTAAGCTCCAATGAGCTTAAAT
1 CAGTAAGCTCTTACGAGCTTAAAT
21856780 -AGTAAGCTCTTACGAGCT
1 CAGTAAGCTCTTACGAGCT
21856798 GTGGTGAGTC
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
23 28 0.85
24 5 0.15
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (24 bp):
CAGTAAGCTCTTACGAGCTTAAAT
Found at i:21857163 original size:17 final size:18
Alignment explanation
Indices: 21857131--21857164 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21857121 TTTTCATTCA
21857131 ATTCAATTTAGCCTGAAC
1 ATTCAATTTAGCCTGAAC
*
21857149 ATTCATTTTAG-CTGAA
1 ATTCAATTTAGCCTGAA
21857165 TTACAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (18 bp):
ATTCAATTTAGCCTGAAC
Found at i:21860138 original size:33 final size:33
Alignment explanation
Indices: 21860098--21860162 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
21860088 AGTAAGGAGG
21860098 AGTAAGATTGTGACATCGATCATCTTATTGATA
1 AGTAAGATTGTGACATCGATCATCTTATTGATA
21860131 AGTAAGATTGTGACATCGATCATCTTATTGAT
1 AGTAAGATTGTGACATCGATCATCTTATTGAT
21860163 GAGCTCATGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.37
Consensus pattern (33 bp):
AGTAAGATTGTGACATCGATCATCTTATTGATA
Found at i:21869886 original size:40 final size:40
Alignment explanation
Indices: 21869793--21870005 Score: 254
Period size: 40 Copynumber: 5.3 Consensus size: 40
21869783 ATTATAATCT
* * * *
21869793 CGCACACTAAGTACCTTT-CATAGC-GAAAGCTATCTCAATCT
1 CGCACACTAAGT-GCTTTATATAGCTG-AAGCTATCTCGAT-A
** *
21869834 CGCACACTAAGTGCCATATATAG-TCGAAGCTAT-TCTGATT
1 CGCACACTAAGTGCTTTATATAGCT-GAAGCTATCTC-GATA
* *
21869874 CGCACAGTAAGTGCTTTATATAGCTGAAGCTATCTCAATA
1 CGCACACTAAGTGCTTTATATAGCTGAAGCTATCTCGATA
*
21869914 CGCACACTAAGTGCTTTATATAGCCGAAGCTATCTCGATA
1 CGCACACTAAGTGCTTTATATAGCTGAAGCTATCTCGATA
*
21869954 CGCACACTAAGTGGTTTATATAGCTGAAGCTATCTCGATA
1 CGCACACTAAGTGCTTTATATAGCTGAAGCTATCTCGATA
21869994 CGCACACTAAGT
1 CGCACACTAAGT
21870006 TCCAAACATA
Statistics
Matches: 151, Mismatches: 15, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
40 122 0.81
41 28 0.19
42 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (40 bp):
CGCACACTAAGTGCTTTATATAGCTGAAGCTATCTCGATA
Found at i:21869946 original size:80 final size:80
Alignment explanation
Indices: 21869752--21870005 Score: 298
Period size: 80 Copynumber: 3.1 Consensus size: 80
21869742 TCGATATCTA
* * * * * * *
21869752 GCACACTAAGTGCCAAACCATAGCTGAAGCTATTATAATCTCGCACACTAAGTACCTTT-CATAG
1 GCACACTAAGTGCCATA-TATAGCCGAAGCTATTCTGAT-TCGCACACTAAGT-GCTTTATATAG
*
21869816 C-GAAAGCTATCTCAATCTC
63 CTG-AAGCTATCTCAAT-AC
* *
21869835 GCACACTAAGTGCCATATATAGTCGAAGCTATTCTGATTCGCACAGTAAGTGCTTTATATAGCTG
1 GCACACTAAGTGCCATATATAGCCGAAGCTATTCTGATTCGCACACTAAGTGCTTTATATAGCTG
21869900 AAGCTATCTCAATAC
66 AAGCTATCTCAATAC
** * *
21869915 GCACACTAAGTGCTTTATATAGCCGAAGCTA-TCTCGATACGCACACTAAGTGGTTTATATAGCT
1 GCACACTAAGTGCCATATATAGCCGAAGCTATTCT-GATTCGCACACTAAGTGCTTTATATAGCT
*
21869979 GAAGCTATCTCGATAC
65 GAAGCTATCTCAATAC
21869995 GCACACTAAGT
1 GCACACTAAGT
21870006 TCCAAACATA
Statistics
Matches: 151, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
79 3 0.02
80 85 0.56
81 30 0.20
82 17 0.11
83 16 0.11
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (80 bp):
GCACACTAAGTGCCATATATAGCCGAAGCTATTCTGATTCGCACACTAAGTGCTTTATATAGCTG
AAGCTATCTCAATAC
Found at i:21876069 original size:17 final size:17
Alignment explanation
Indices: 21876047--21876096 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
21876037 TTTGAATTCC
21876047 ATAGCTATTTAATCCTT
1 ATAGCTATTTAATCCTT
* *
21876064 ATAGCTA-CT-AGCC--
1 ATAGCTATTTAATCCTT
21876077 ATAGCTATTTAATCCTT
1 ATAGCTATTTAATCCTT
21876094 ATA
1 ATA
21876097 ACTACTAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
13 7 0.28
14 1 0.04
15 6 0.24
16 1 0.04
17 10 0.40
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (17 bp):
ATAGCTATTTAATCCTT
Found at i:21876081 original size:30 final size:30
Alignment explanation
Indices: 21876045--21876104 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
21876035 GTTTTGAATT
*
21876045 CCATAGCTATTTAATCCTTATAGCTACTAG
1 CCATAGCTATTTAATCCTTATAACTACTAG
21876075 CCATAGCTATTTAATCCTTATAACTACTAG
1 CCATAGCTATTTAATCCTTATAACTACTAG
21876105 AATTCAACCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (30 bp):
CCATAGCTATTTAATCCTTATAACTACTAG
Found at i:21877629 original size:17 final size:17
Alignment explanation
Indices: 21877607--21877639 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
21877597 GTTAGTGCAC
21877607 ATTGTCATTACATTTTT
1 ATTGTCATTACATTTTT
*
21877624 ATTGTCATTTCATTTT
1 ATTGTCATTACATTTT
21877640 AATCTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.61
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:21882893 original size:29 final size:29
Alignment explanation
Indices: 21882860--21882924 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
21882850 GTGACGAGAT
21882860 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
21882889 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
21882918 CGGCACT
1 TGGCACT
21882925 GGGTGTGCGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:21890902 original size:29 final size:29
Alignment explanation
Indices: 21890869--21890933 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
21890859 GTGACGAGAT
21890869 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
21890898 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
21890927 CGGCACT
1 TGGCACT
21890934 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:21892520 original size:291 final size:291
Alignment explanation
Indices: 21892143--21892720 Score: 1111
Period size: 291 Copynumber: 2.0 Consensus size: 291
21892133 CGAAGGTCAG
21892143 AGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTACCAATTGGCACGACCAAAA
1 AGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTACCAATTGGCACGACCAAAA
*
21892208 ATTCTAGAAATAAATCCATGGATGGGTATGTGAGTATAAATTCAGGGAAAATTTACGAATCCAGT
66 ATTCTAGAAATAAATCCATGGATGGGTATGTGAGTATAAATTCAGGGAAAATTTACGAAACCAGT
*
21892273 TTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGTGACGGTGACGCAGTTTTCCAGCCTGACT
131 TTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGACGCAGTTTTCCAGCCTGACT
21892338 GGTAATGTCAAATTGGTTGGTACCTTGAGAGGATTTGGCCGTTAACCCCTCGTGTCCGACACCGG
196 GGTAATGTCAAATTGGTTGGTACCTTGAGAGGATTTGGCCGTTAACCCCTCGTGTCCGACACCGG
21892403 CGACGGTCACGAGTTAGGGGTGTTACAATTT
261 CGACGGTCACGAGTTAGGGGTGTTACAATTT
*
21892434 AGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTACCAATTGGCCCGACCAAAA
1 AGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTACCAATTGGCACGACCAAAA
*
21892499 ATTCTAGAAATAAATCCATGGATGGGTATGTGAGTCTAAATTCAGGGAAAATTTACGAAACCAGT
66 ATTCTAGAAATAAATCCATGGATGGGTATGTGAGTATAAATTCAGGGAAAATTTACGAAACCAGT
21892564 TTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGACGCAGTTTTCCAGCCTGACT
131 TTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGACGCAGTTTTCCAGCCTGACT
*
21892629 GGTAATGTCAAATTGGTTGGTACCTTGAGAGGATTTGGCCGTTAACCCCTCGTGTCTGACACCGG
196 GGTAATGTCAAATTGGTTGGTACCTTGAGAGGATTTGGCCGTTAACCCCTCGTGTCCGACACCGG
21892694 CGACGGTCACGAGTTAGGGGTGTTACA
261 CGACGGTCACGAGTTAGGGGTGTTACA
21892721 TTTGGTATAT
Statistics
Matches: 282, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
291 282 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (291 bp):
AGCAGTCGATCCCTGTAACATGGGTGACTTTAACTAATAAACTGTACCAATTGGCACGACCAAAA
ATTCTAGAAATAAATCCATGGATGGGTATGTGAGTATAAATTCAGGGAAAATTTACGAAACCAGT
TTCCGAGTTTTGAAACTCGAGATATGATTTTTAAGGCGACGGTGACGCAGTTTTCCAGCCTGACT
GGTAATGTCAAATTGGTTGGTACCTTGAGAGGATTTGGCCGTTAACCCCTCGTGTCCGACACCGG
CGACGGTCACGAGTTAGGGGTGTTACAATTT
Found at i:21893667 original size:32 final size:32
Alignment explanation
Indices: 21893626--21893726 Score: 193
Period size: 32 Copynumber: 3.2 Consensus size: 32
21893616 TAAAACAGAC
21893626 AGTAAACACACAGAGTAAGCTACAAAGAGCTT
1 AGTAAACACACAGAGTAAGCTACAAAGAGCTT
21893658 AGTAAACACACAGAGTAAGCTACAAAGAGCTT
1 AGTAAACACACAGAGTAAGCTACAAAGAGCTT
*
21893690 AGTAAACACACAGAGTAAGCTACAAATAGCTT
1 AGTAAACACACAGAGTAAGCTACAAAGAGCTT
21893722 AGTAA
1 AGTAA
21893727 GCCAAATACA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.48, C:0.18, G:0.18, T:0.17
Consensus pattern (32 bp):
AGTAAACACACAGAGTAAGCTACAAAGAGCTT
Found at i:21894082 original size:43 final size:42
Alignment explanation
Indices: 21894024--21894171 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 42
21894014 CAATGCCGAC
* *
21894024 GTCCCAAACATGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACA-GTAATTCAATATCGATGCCTAT
* ** * *
21894067 GTCCCAGACAGGGTCTTACACAAAATCAAATAT-GATGCCGAT
1 GTCCCAGACATGGTCTTACAGTAATTC-AATATCGATGCCTAT
* * * *
21894109 GTCCCAGACATGATCTTATACGTAAATCTC-A-ATCGAGGCCTGT
1 GTCCCAGACATGGTCTTACA-GT-AAT-TCAATATCGATGCCTAT
*
21894152 GTCCCAGACACGGTCTTACA
1 GTCCCAGACATGGTCTTACA
21894172 CGATGTCACA
Statistics
Matches: 81, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
42 30 0.37
43 47 0.58
44 2 0.02
45 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACAGTAATTCAATATCGATGCCTAT
Found at i:21894155 original size:85 final size:85
Alignment explanation
Indices: 21894016--21894172 Score: 210
Period size: 85 Copynumber: 1.8 Consensus size: 85
21894006 ATCAAGTACA
* * * *
21894016 ATGCCGACGTCCCAAACATGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAGGGT
1 ATGCCGACGTCCCAAACATGATCTTACACGTAATTCAATATCGAGGCCTCTGTCCCAGACACGGT
21894081 CTTACACAAAATCAAATATG
66 CTTACACAAAATCAAATATG
* * * *
21894101 ATGCCGATGTCCCAGACATGATCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACACG
1 ATGCCGACGTCCCAAACATGATCTTACACGT-AAT-TCAATATCGAGGCCTCTGTCCCAGACACG
21894164 GTCTTACAC
64 GTCTTACAC
21894173 GATGTCACAG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 56 0.90
86 4 0.06
87 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (85 bp):
ATGCCGACGTCCCAAACATGATCTTACACGTAATTCAATATCGAGGCCTCTGTCCCAGACACGGT
CTTACACAAAATCAAATATG
Found at i:21896728 original size:47 final size:45
Alignment explanation
Indices: 21896616--21896833 Score: 226
Period size: 47 Copynumber: 4.7 Consensus size: 45
21896606 GATTTCTTGT
* **
21896616 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATAAGATGA
*
21896662 GTGCCAGTGTAAGACCATGTCTGGGACACGGCATCGGCATAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCATA-AGATGA
* * * *
21896710 GTGCCAGTGTAAGACATGTTTGAGACATGCATCGGCCTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT--AAGATGA
* * *
21896757 -TAGCCAATGTAAGACATGTCTAGGACATGCATCGGC-TAAGA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAAGATG-A
* *
21896801 GTGCTAGTGTAAGACATGTCCGGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
21896834 AGTACATATA
Statistics
Matches: 145, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 30 0.21
45 1 0.01
46 25 0.17
47 62 0.43
48 26 0.18
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (45 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAAGATGA
Found at i:21896777 original size:94 final size:91
Alignment explanation
Indices: 21896616--21896833 Score: 262
Period size: 94 Copynumber: 2.4 Consensus size: 91
21896606 GATTTCTTGT
** *
21896616 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCCAGTGTAAGACCATG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATGAGTGCCAATGTAAGACCATG
*
21896681 TCTGGGACACGGCATCGGC-ATAGAGATGA
66 TCTAGGACA-GGCATCGGCTA-AGAG-T-A
* * *
21896710 GTGCCAGTGTAAGACATGTTTGAGACATGCATCGGCCTCGACGATGA-TAGCCAATGTAAGA-CA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ACGATGAGT-GCCAATGTAAGACCA
* *
21896773 TGTCTAGGACATGCATCGGCTAAGAGTT
64 TGTCTAGGACAGGCATCGGCTAAGAGTA
* *
21896801 GTGCTAGTGTAAGACATGTCCGGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
21896834 AGTACATATA
Statistics
Matches: 108, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
91 29 0.27
92 1 0.01
93 12 0.11
94 50 0.46
95 16 0.15
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (91 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATGAGTGCCAATGTAAGACCATG
TCTAGGACAGGCATCGGCTAAGAGTA
Found at i:21901355 original size:39 final size:40
Alignment explanation
Indices: 21901255--21901436 Score: 158
Period size: 40 Copynumber: 4.6 Consensus size: 40
21901245 TCGAATGATG
* * * *
21901255 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTAATAAA
* * *
21901295 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTAATAAA
*
21901335 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTAATAAA
* * * ***
21901373 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTAATA-AA
**
21901414 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
21901437 TGAGGAGTCG
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTAATAAA
Found at i:21901400 original size:78 final size:80
Alignment explanation
Indices: 21901255--21901436 Score: 201
Period size: 78 Copynumber: 2.3 Consensus size: 80
21901245 TCGAATGATG
* * * * *
21901255 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGATTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
21901320 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
21901335 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
21901397 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
21901414 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
21901437 TGAGGAGTCG
Statistics
Matches: 86, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
77 1 0.01
78 45 0.52
79 29 0.34
80 11 0.13
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:21904510 original size:40 final size:39
Alignment explanation
Indices: 21904453--21904637 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
21904443 ATTAAATGAT
* * *
21904453 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
21904493 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
21904533 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
21904573 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
*
21904613 ATCCGAGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
21904638 CGTGCATGTG
Statistics
Matches: 125, Mismatches: 17, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 121 0.97
41 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:21904589 original size:80 final size:80
Alignment explanation
Indices: 21904452--21904658 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
21904442 AATTAAATGA
* * ** * *
21904452 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
21904517 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
21904530 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
21904595 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * * *
21904612 TATCCGAGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
21904659 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:21904643 original size:40 final size:40
Alignment explanation
Indices: 21904451--21904658 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
21904441 CAATTAAATG
* * ** * *
21904451 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * * *
21904491 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* *
21904531 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
21904571 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * *
21904611 CTATCCGAGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
21904651 ATATCCGG
1 ATATCCGG
21904659 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.03
40 135 0.94
41 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:21907593 original size:46 final size:45
Alignment explanation
Indices: 21907543--21907715 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
21907533 TGGTTGAGCA
21907543 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
21907589 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* **
21907634 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGAGAGCG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
21907682 CCCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
21907716 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:21907699 original size:93 final size:93
Alignment explanation
Indices: 21907540--21907710 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
21907530 GGATGGTTGA
* * *
21907540 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAGT
21907605 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
21907633 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGAGAGCGCCCGAGCTCTTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAGT
21907698 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
21907711 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:21909627 original size:19 final size:19
Alignment explanation
Indices: 21909603--21909642 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
21909593 TGTGCCATCA
21909603 TAAATTCATAGGCATAACT
1 TAAATTCATAGGCATAACT
* *
21909622 TAAATTTATATGCATAACT
1 TAAATTCATAGGCATAACT
21909641 TA
1 TA
21909643 CACATTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.38
Consensus pattern (19 bp):
TAAATTCATAGGCATAACT
Found at i:21917303 original size:19 final size:19
Alignment explanation
Indices: 21917279--21917318 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
21917269 TGTGCCATCA
21917279 TAAATTCATAGGCATAACT
1 TAAATTCATAGGCATAACT
* *
21917298 TAAATTTATATGCATAACT
1 TAAATTCATAGGCATAACT
21917317 TA
1 TA
21917319 CACATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.38
Consensus pattern (19 bp):
TAAATTCATAGGCATAACT
Found at i:21918849 original size:40 final size:40
Alignment explanation
Indices: 21918789--21918956 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
21918779 TGGGATTTAA
* ** *
21918789 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
21918829 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
21918869 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
21918909 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
21918949 CCGGATAT
1 CCGGATAT
21918957 CATTCAAATG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 104 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:21918936 original size:80 final size:80
Alignment explanation
Indices: 21918789--21918956 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 80
21918779 TGGGATTTAA
* * ** * *
21918789 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
21918854 CCTTCGGGTCTTAGC
66 CCTTCGGGACTTAGC
** * * *
21918869 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
21918933 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAGC
21918949 CCGGATAT
1 CCGGATAT
21918957 CATTCAAATG
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
80 73 0.97
81 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGGACTTAGC
Found at i:21926171 original size:40 final size:40
Alignment explanation
Indices: 21926111--21926278 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
21926101 CGGGATTTAA
* ** *
21926111 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
21926151 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
21926191 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
21926231 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
21926271 CCGGATAT
1 CCGGATAT
21926279 CATTCAAATG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 104 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:21926258 original size:80 final size:80
Alignment explanation
Indices: 21926097--21926278 Score: 215
Period size: 80 Copynumber: 2.3 Consensus size: 80
21926087 AATTCACGTA
* * * * **
21926097 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
21926161 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
21926176 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
21926240 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
21926256 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
21926279 CATTCAAATG
Statistics
Matches: 86, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 11 0.13
80 73 0.85
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:21930526 original size:14 final size:13
Alignment explanation
Indices: 21930499--21930541 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 13
21930489 TAGCCGTGTG
21930499 TTCTTCTTTGCTTT
1 TTCTTCTTT-CTTT
21930513 TTCTCTCTTTCTTT
1 TTCT-TCTTTCTTT
21930527 TTCTTTCTTTTCTTT
1 TTC-TTC-TTTCTTT
21930542 GATAATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.74
Consensus pattern (13 bp):
TTCTTCTTTCTTT
Found at i:21931676 original size:87 final size:86
Alignment explanation
Indices: 21931527--21931689 Score: 231
Period size: 87 Copynumber: 1.9 Consensus size: 86
21931517 TTAAATTCGA
* *
21931527 TGAATTCATCAAGTTCGCCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTTAGAGTAA
1 TGAATTCATCAAGTCCGCCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAGAGTAA
21931592 TAAACTTAACCTCACATGTCGG
66 -AAACTTAACCTCACATGTCGG
* *
21931614 TGAATTCATCAAGTCCGTCTCAATAGGACCACCCAAA-TCCT-GAGATATGAATTCATTAAGAGT
1 TGAATTCATCAAGTCCGCCTCAATAGGACCACCCAAACT-CTAG-GATATGAACTCATTAAGAGT
* *
21931677 GAGAACTTAACCT
64 AAAAACTTAACCT
21931690 TATGCATATT
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
86 12 0.18
87 56 0.82
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.26
Consensus pattern (86 bp):
TGAATTCATCAAGTCCGCCTCAATAGGACCACCCAAACTCTAGGATATGAACTCATTAAGAGTAA
AAACTTAACCTCACATGTCGG
Found at i:21933122 original size:26 final size:26
Alignment explanation
Indices: 21933088--21933168 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
21933078 ACTCATGGTT
* * *
21933088 CTCTGACCAACTTAAACTCAAGGGCC
1 CTCTAACCAACTCAAACTCAAGGGAC
21933114 CTCTAACCAACTCAAACTCAAGGGAC
1 CTCTAACCAACTCAAACTCAAGGGAC
* *
21933140 CTCCAACCAACTCAAACTCAAGGGTC
1 CTCTAACCAACTCAAACTCAAGGGAC
21933166 CTC
1 CTC
21933169 AGACCCATTC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.33, C:0.37, G:0.12, T:0.17
Consensus pattern (26 bp):
CTCTAACCAACTCAAACTCAAGGGAC
Found at i:21942114 original size:59 final size:59
Alignment explanation
Indices: 21942034--21942163 Score: 233
Period size: 59 Copynumber: 2.2 Consensus size: 59
21942024 TATAAATTTG
* * *
21942034 GCCACTAATGTTTGTATGTTTTGTTAAAATAGTGTTAATTGTATTTTTAAATTTTTTTT
1 GCCATTAATTTTTGTATGTTTTGTTAAAATAGTGTTAATTGTATTTTTAAATTTTTATT
21942093 GCCATTAATTTTTGTATGTTTTGTTAAAATAGTGTTAATTGTATTTTTAAATTTTTATT
1 GCCATTAATTTTTGTATGTTTTGTTAAAATAGTGTTAATTGTATTTTTAAATTTTTATT
21942152 GCCATTAATTTT
1 GCCATTAATTTT
21942164 GTTTCTTTTT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 68 1.00
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.56
Consensus pattern (59 bp):
GCCATTAATTTTTGTATGTTTTGTTAAAATAGTGTTAATTGTATTTTTAAATTTTTATT
Found at i:21945321 original size:46 final size:46
Alignment explanation
Indices: 21945270--21945436 Score: 244
Period size: 46 Copynumber: 3.6 Consensus size: 46
21945260 AGTTAAATAT
* *
21945270 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGTG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAACATGTATGAG
*
21945316 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAAGATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAACATGTATGAG
*
21945362 ATATATGTGTGGTAAAGCCAAATGGCTAGTATGAAACATGTATGAG
1 ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAACATGTATGAG
* * * *
21945408 ATGTATATATGTGATAAGGCCGAATGGCT
1 A--TATATGTGTGGTAAAGCCAAATGGCT
21945437 GATGTGATGA
Statistics
Matches: 111, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
46 89 0.80
48 22 0.20
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (46 bp):
ATATATGTGTGGTAAAGCCAAATGGCTAGTGTGAAACATGTATGAG
Found at i:21945463 original size:47 final size:47
Alignment explanation
Indices: 21945409--21945519 Score: 159
Period size: 47 Copynumber: 2.4 Consensus size: 47
21945399 ATGTATGAGA
** * *
21945409 TGTATATATGTGATAAGGCCGAATGGCTGATGTGATGAATGTCAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
* *
21945456 TGTATATAAGTGATAAGGCCGAATGGCCAATGCGATGAATATGAAAG
1 TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
*
21945503 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
21945520 TCCCGAGGGG
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCGAATGGCCAATGCGATGAATATCAAAG
Found at i:21947577 original size:20 final size:20
Alignment explanation
Indices: 21947552--21947591 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
21947542 AAACTTCTTC
*
21947552 ACTTACTCACTTACTCAAAT
1 ACTTACTCACTTAATCAAAT
*
21947572 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
21947592 TTATTAATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:21947983 original size:108 final size:110
Alignment explanation
Indices: 21947823--21948019 Score: 274
Period size: 108 Copynumber: 1.8 Consensus size: 110
21947813 GTCTCCTTTT
* * * *
21947823 GAAACTTACCATTGTCATGTCTCGACATGGTCTTACATGGTATCATTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCATTACCTTA-GAAACCTCACC
21947886 AA-TGCCATGCCTTGGCATGGTCTTCCATAGGACCTTTGCATTATA
65 AATTGCCATGCCTTGGCATGGTCTTCCATAGGACCTTTGCATTATA
* * * * *
21947931 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTACCTTAGAAACCTTACTA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCATTACCTTAGAAACCTCACCA
*
21947996 ATTTCCATGCCTTGGCATGGTCTT
66 ATTGCCATGCCTTGGCATGGTCTT
21948020 ACATGGTATC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.63
109 6 0.08
110 21 0.28
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCATTACCTTAGAAACCTCACCA
ATTGCCATGCCTTGGCATGGTCTTCCATAGGACCTTTGCATTATA
Found at i:21951175 original size:17 final size:18
Alignment explanation
Indices: 21951138--21951173 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
21951128 GTAAGTGTAC
*
21951138 ATTGTCATTGCATTTTTTT
1 ATTGTCATTACA-TTTTTT
21951157 ATTGTCATTACATTTTT
1 ATTGTCATTACATTTTT
21951174 ATGTTAGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.19, C:0.11, G:0.08, T:0.61
Consensus pattern (18 bp):
ATTGTCATTACATTTTTT
Found at i:21955172 original size:17 final size:17
Alignment explanation
Indices: 21955150--21955191 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
21955140 GCCGATTAAG
21955150 CGTGTGGGTCACACAGA
1 CGTGTGGGTCACACAGA
21955167 CGTGTGGGTCACACAGA
1 CGTGTGGGTCACACAGA
21955184 CGTGTGGG
1 CGTGTGGG
21955192 CCCATACGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.19, C:0.21, G:0.40, T:0.19
Consensus pattern (17 bp):
CGTGTGGGTCACACAGA
Found at i:21955593 original size:35 final size:35
Alignment explanation
Indices: 21955547--21955618 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
21955537 CCGTAATGGC
*
21955547 ACGATATGGTGTGTAGGGATGGGTGGGTGTTTTTA
1 ACGATATGGTGTGTAGGGATGGGTGGGTATTTTTA
21955582 ACGATATGGTGTGTAGGGATGGGTGGGTATTTTTA
1 ACGATATGGTGTGTAGGGATGGGTGGGTATTTTTA
21955617 AC
1 AC
21955619 CCCACATGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.19, C:0.04, G:0.40, T:0.36
Consensus pattern (35 bp):
ACGATATGGTGTGTAGGGATGGGTGGGTATTTTTA
Found at i:21955638 original size:37 final size:35
Alignment explanation
Indices: 21955552--21955640 Score: 117
Period size: 35 Copynumber: 2.5 Consensus size: 35
21955542 ATGGCACGAT
* * *
21955552 ATGGTGTGTAGGGATGGGTGGGTGTTTTTAACGAT
1 ATGGTGTGTAGGGATGGGTGGGTATTTTTAACCAC
21955587 ATGGTGTGTAGGGATGGGTGGGTATTTTTAACCCCAC
1 ATGGTGTGTAGGGATGGGTGGGTATTTTTAA--CCAC
21955624 ATGGTGTGCT-GGGATGG
1 ATGGTGTG-TAGGGATGG
21955641 CCGTAGTTGG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
35 30 0.62
37 17 0.35
38 1 0.02
ACGTcount: A:0.17, C:0.08, G:0.42, T:0.34
Consensus pattern (35 bp):
ATGGTGTGTAGGGATGGGTGGGTATTTTTAACCAC
Found at i:21965226 original size:46 final size:46
Alignment explanation
Indices: 21965176--21965348 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
21965166 TGGTTGAGCA
21965176 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
21965222 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
21965267 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
21965315 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
21965349 AGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:21965332 original size:93 final size:93
Alignment explanation
Indices: 21965173--21965343 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
21965163 GGATGGTTGA
* *
21965173 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
21965238 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
21965266 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
21965331 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
21965344 ACTTAAGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:21969218 original size:40 final size:40
Alignment explanation
Indices: 21969181--21969405 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
21969171 GCTACTCGTT
*
21969181 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
21969221 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
21969261 CCAATGCCTTCGGG-CTTAGCCCGGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATTTAGTAACTCGCA
*
21969300 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
21969340 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTTACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
21969381 CAAA-CCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
21969406 CATCATTTGA
Statistics
Matches: 167, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 119 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:21969292 original size:79 final size:79
Alignment explanation
Indices: 21969181--21969405 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 79
21969171 GCTACTCGTT
* * *
21969181 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
21969246 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* *
21969261 CCAATGCCTTCGGGCTTAGCCCGGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCC-GGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
21969324 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * * * *
21969340 CAAATGCCTTCGGATCTTAGTCCGGATATAGTTACTTAGCACAAA-CCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
21969404 GA
64 GA
21969406 CATCATTTGA
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.02
79 69 0.54
80 44 0.35
81 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:21969365 original size:119 final size:120
Alignment explanation
Indices: 21969181--21969404 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
21969171 GCTACTCGTT
21969181 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * **
21969246 ATTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGGATTAGTAACTCGCA
66 ATATAGTAACTTAGCA-CAAACCCTTCGGGACTTAGCCCGGGATTAGTAACTCGCA
* * **
21969300 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
*
21969362 CGGATATAGTTACTTAGCACAAACCCTTCGGGACTTAGCCCGG
63 CGGATATAGTAACTTAGCACAAACCCTTCGGGACTTAGCCCGG
21969405 ACATCATTTG
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
118 6 0.07
119 69 0.76
120 16 0.18
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAACCCTTCGGGACTTAGCCCGGGATTAGTAACTCGCA
Found at i:21977492 original size:79 final size:79
Alignment explanation
Indices: 21977377--21977601 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 79
21977367 GCTACTCGTT
* *
21977377 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA-ACCTG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGACC-G
21977441 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* *
21977457 CCAATGCCTTCGGGCTTAGCCCGGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCC-GGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGACCG
21977520 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * * * *
21977536 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGACCG
21977600 GA
64 GA
21977602 CATCATTCGA
Statistics
Matches: 128, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 3 0.02
79 67 0.52
80 47 0.37
81 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGACCGGA
TTTAGTAACTCGCA
Found at i:21977585 original size:119 final size:120
Alignment explanation
Indices: 21977377--21977600 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
21977367 GCTACTCGTT
21977377 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
* * *
21977442 ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGGATTAGTAACTCGCA
66 ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGGGATTAGTAACTCGCA
* * *
21977496 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-AC
*
21977558 C-GGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
62 CTGGATATAGTAAC-TAGCACCAAAGCCTTCGGGACTTAGCCCGG
21977601 ACATCATTCG
Statistics
Matches: 92, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
118 6 0.07
119 68 0.74
120 18 0.20
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
ATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGGGATTAGTAACTCGCA
Found at i:21977601 original size:40 final size:40
Alignment explanation
Indices: 21977359--21977601 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
21977349 CGGAATTTAA
** *
21977359 CGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
21977399 CGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
21977439 TGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
21977478 CGGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 C-GGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCC
* *
21977518 CGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCC
* *
21977558 CGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
21977598 CGGA
1 CGGA
21977602 CATCATTCGA
Statistics
Matches: 179, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.18
40 133 0.74
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:21979419 original size:66 final size:68
Alignment explanation
Indices: 21979343--21979529 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
21979333 TAGTACCACT
*
21979343 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
21979405 CACG
65 CACG
21979409 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
21979474 ATCACG
63 ATCACG
21979480 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
21979530 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:21979454 original size:71 final size:71
Alignment explanation
Indices: 21979366--21979529 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
21979356 CGATTTGTCT
21979366 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
21979431 CTTTCA
66 CTTTCA
21979437 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
21979502 CTTTCA
66 CTTTCA
21979508 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
21979530 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:21979567 original size:71 final size:70
Alignment explanation
Indices: 21979366--21979563 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
21979356 CGATTTGTCT
* * *
21979366 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
21979431 CTTTCA
65 CTTTCA
* * *
21979437 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
21979502 CTTTCA
65 CTTTCA
* *
21979508 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
21979564 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:21986987 original size:66 final size:68
Alignment explanation
Indices: 21986911--21987097 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
21986901 TAGTACCACT
*
21986911 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
21986973 CACG
65 CACG
21986977 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
21987042 ATCACG
63 ATCACG
21987048 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
21987098 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:21987022 original size:71 final size:71
Alignment explanation
Indices: 21986934--21987097 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
21986924 CGATTTGTCT
21986934 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
21986999 CTTTCA
66 CTTTCA
21987005 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
21987070 CTTTCA
66 CTTTCA
21987076 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
21987098 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:21987135 original size:71 final size:70
Alignment explanation
Indices: 21986934--21987131 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
21986924 CGATTTGTCT
* * *
21986934 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
21986999 CTTTCA
65 CTTTCA
* * *
21987005 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
21987070 CTTTCA
65 CTTTCA
* *
21987076 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
21987132 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:21988773 original size:2 final size:2
Alignment explanation
Indices: 21988766--21988793 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
21988756 GTGTGCAATC
21988766 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21988794 GTACAAGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21993474 original size:41 final size:41
Alignment explanation
Indices: 21993400--21993689 Score: 358
Period size: 41 Copynumber: 7.1 Consensus size: 41
21993390 CAAAAATTGT
* **
21993400 AAAACACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGCTA
1 AAAAC-CAGAGCATTAGCGGCGCTTTT-GGAAAAACGCCGCTA
* * * *
21993442 AAAA-TAGAGCAATAGCGGCGCTTTAGCAAAAAACGCCGCT-
1 AAAACCAGAGCATTAGCGGCGCTTTTG-GAAAAACGCCGCTA
* **
21993482 AAAACACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGCTA
1 AAAAC-CAGAGCATTAGCGGCGCTTTT-GGAAAAACGCCGCTA
*
21993524 AAAA-CAGAGCATTAGTGGCGCTTTTGGAAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTA
21993564 AAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTA
* *
21993605 AAAACCAGAGCATTAGCGGCGCTTTT-GATAAAGCGCTGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGA-AAAACGCCGCTA
*
21993646 AAAACCAGAACATTAGCGGCGCTTTTGGAAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTA
21993687 AAA
1 AAA
21993690 GTCATATAAC
Statistics
Matches: 220, Mismatches: 18, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
40 52 0.24
41 143 0.65
42 25 0.11
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (41 bp):
AAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTA
Found at i:21993678 original size:123 final size:121
Alignment explanation
Indices: 21993429--21993689 Score: 357
Period size: 122 Copynumber: 2.1 Consensus size: 121
21993419 GCGTTTTACC
*
21993429 AAAAACGCCGCTAAAAATAGAGCAATAGCGGCGCTTTAGCAAAAAACGCCGCTAAAACACAGAGC
1 AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTAGCAAAAAACGCCGCTAAAACACAGAGC
* *
21993494 AATAGCGGCGTTTTACCAAAAACGCCGCTAAAAACAGAGCATTAGTGGCGCTTTTGG
66 AATAGCGGCGTTTTA-CAAAAACGCCGCTAAAAACAGAACATTAGCGGCGCTTTTGG
* * *
21993551 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTG-GAAAAACGCCGCTAAAA-ACCAGA
1 AAAAACGCCGCTAAAAA-CAGAGCAATAGCGGCGCTTTAGCAAAAAACGCCGCTAAAACA-CAGA
* * * *
21993614 GCATTAGCGGCGCTTTTGA-TAAAGCGCTGCTAAAAACCAGAACATTAGCGGCGCTTTTGG
64 GCAATAGCGGCG-TTTT-ACAAAAACGCCGCTAAAAA-CAGAACATTAGCGGCGCTTTTGG
21993674 AAAAACGCCGCTAAAA
1 AAAAACGCCGCTAAAA
21993690 GTCATATAAC
Statistics
Matches: 124, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
121 1 0.01
122 62 0.50
123 60 0.48
124 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (121 bp):
AAAAACGCCGCTAAAAACAGAGCAATAGCGGCGCTTTAGCAAAAAACGCCGCTAAAACACAGAGC
AATAGCGGCGTTTTACAAAAACGCCGCTAAAAACAGAACATTAGCGGCGCTTTTGG
Found at i:21994007 original size:7 final size:7
Alignment explanation
Indices: 21993978--21994106 Score: 50
Period size: 7 Copynumber: 18.1 Consensus size: 7
21993968 GATGAATTAT
21993978 GGGTTTA
1 GGGTTTA
*
21993985 GGGATTA
1 GGGTTTA
* *
21993992 TGATTTA
1 GGGTTTA
21993999 GGGTTTA
1 GGGTTTA
*
21994006 GGGGTTA
1 GGGTTTA
21994013 GGG-TT-
1 GGGTTTA
21994018 GGAGTTTAA
1 GG-GTTT-A
** *
21994027 GGCATAA
1 GGGTTTA
21994034 GGGTTT-
1 GGGTTTA
*
21994040 GGTGTTAA
1 GG-GTTTA
*
21994048 GGGTTAA
1 GGGTTTA
21994055 GGGTTTA
1 GGGTTTA
*
21994062 GTGTTTA
1 GGGTTTA
*
21994069 GTGTTTA
1 GGGTTTA
*
21994076 TGGG-ATA
1 -GGGTTTA
*
21994083 GGGGTTAAA
1 -GGGTT-TA
*
21994092 AGGTTTA
1 GGGTTTA
21994099 GGGTTTA
1 GGGTTTA
21994106 G
1 G
21994107 ATTAATTAGT
Statistics
Matches: 89, Mismatches: 24, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
5 2 0.02
6 5 0.06
7 70 0.79
8 9 0.10
9 3 0.03
ACGTcount: A:0.22, C:0.01, G:0.40, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:21994047 original size:21 final size:21
Alignment explanation
Indices: 21994023--21994066 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
21994013 GGGTTGGAGT
*
21994023 TTAAGGCATAAGGGTTTGGTG
1 TTAAGGCATAAGGGTTTAGTG
**
21994044 TTAAGGGTTAAGGGTTTAGTG
1 TTAAGGCATAAGGGTTTAGTG
21994065 TT
1 TT
21994067 TAGTGTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.02, G:0.36, T:0.39
Consensus pattern (21 bp):
TTAAGGCATAAGGGTTTAGTG
Found at i:21994734 original size:3 final size:3
Alignment explanation
Indices: 21994726--21994774 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
21994716 CATTTTAGTA
21994726 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
21994774 A
1 A
21994775 GAGAAAAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:21996934 original size:2 final size:2
Alignment explanation
Indices: 21996927--21996966 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
21996917 CTATGATAAT
21996927 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21996967 GTAAGCTATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22001082 original size:15 final size:15
Alignment explanation
Indices: 22001062--22001090 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
22001052 TTACAAGTGA
22001062 TTGTTGTTAAGATAC
1 TTGTTGTTAAGATAC
22001077 TTGTTGTTAAGATA
1 TTGTTGTTAAGATA
22001091 TTGAACCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.48
Consensus pattern (15 bp):
TTGTTGTTAAGATAC
Found at i:22001857 original size:15 final size:16
Alignment explanation
Indices: 22001826--22001872 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
22001816 CATAGAAAAT
*
22001826 AAATAT-TATTTAATTA
1 AAATATATATTT-TTTA
22001842 AAATATAT-TTTTTTA
1 AAATATATATTTTTTA
*
22001857 AAATTTATATTTTTTA
1 AAATATATATTTTTTA
22001873 GCGGCGTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 10 0.37
16 16 0.59
17 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
AAATATATATTTTTTA
Found at i:22005719 original size:21 final size:21
Alignment explanation
Indices: 22005673--22005725 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
22005663 TGCAGGGCTC
*
22005673 ACACGTCCGTGTGATTTAGGG
1 ACACGCCCGTGTGATTTAGGG
22005694 ACACGCCCGTGTGACTCTTA-GG
1 ACACGCCCGTGTGA-T-TTAGGG
22005716 -CACGCCCGTG
1 ACACGCCCGTG
22005726 CCTCAGGTCG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 23 0.79
22 3 0.10
23 3 0.10
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (21 bp):
ACACGCCCGTGTGATTTAGGG
Found at i:22008069 original size:50 final size:50
Alignment explanation
Indices: 22007821--22008070 Score: 222
Period size: 50 Copynumber: 5.0 Consensus size: 50
22007811 GTAACCGAAG
* * * * *
22007821 CTATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACC-AA
1 CTATCTAGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
* * * *
22007870 CAATCTGGTACACGTAGTAGCTTGCACTTATTACTATACACGTGACCTAA
1 CTATCTAGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
* * * *
22007920 CCATAT-GATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAA
1 CTATCTAG-TACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCT-AA
* * * * * * **
22007970 GT-TGTCAGGTACGCATAATAG-TCTGCACTTAGTACTACACATGCAACCTAA
1 CTATCT-A-GTACACGTAGTAGCT-TGCACTTAGTACTACACACGTGACCTAA
*
22008021 CTATCTAGTACACGTAGTAGCTTGCACTTTGTACTACACACGTGACCTAA
1 CTATCTAGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
22008071 AACCATCTTA
Statistics
Matches: 158, Mismatches: 33, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
49 44 0.28
50 76 0.48
51 34 0.22
52 4 0.03
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
CTATCTAGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAA
Found at i:22010447 original size:42 final size:42
Alignment explanation
Indices: 22010400--22010499 Score: 182
Period size: 42 Copynumber: 2.4 Consensus size: 42
22010390 TATTGGTCTC
*
22010400 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTACAAATGGACACGGTGACAAGATT
22010442 GGCACTAAGTGTGCGGGTACAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTACAAATGGACACGGTGACAAGATT
*
22010484 GGCACTACGTGTGCGG
1 GGCACTAAGTGTGCGG
22010500 CTTTAAAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.28, C:0.17, G:0.35, T:0.20
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTACAAATGGACACGGTGACAAGATT
Found at i:22010571 original size:27 final size:28
Alignment explanation
Indices: 22010514--22010583 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
22010504 AAAATTGTAC
**
22010514 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
22010542 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
22010569 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22010584 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:22015479 original size:21 final size:21
Alignment explanation
Indices: 22015439--22015481 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22015429 TTCAGGTGGA
** *
22015439 TCAGCTCTTATTAGCTTCTGT
1 TCAGCTCTTACAAGCGTCTGT
22015460 TCAGCTCTTACAAGCGTCTGT
1 TCAGCTCTTACAAGCGTCTGT
22015481 T
1 T
22015482 GGTGTGCTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (21 bp):
TCAGCTCTTACAAGCGTCTGT
Found at i:22016599 original size:20 final size:20
Alignment explanation
Indices: 22016562--22016600 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22016552 CCTGCAGTCC
* *
22016562 AAAATTTTCAACTTTTTCTT
1 AAAATTTTCAAATGTTTCTT
22016582 AAAATTTTCAAATGTTTCT
1 AAAATTTTCAAATGTTTCT
22016601 GATTTAGTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.13, G:0.03, T:0.51
Consensus pattern (20 bp):
AAAATTTTCAAATGTTTCTT
Found at i:22021147 original size:40 final size:40
Alignment explanation
Indices: 22021092--22021259 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
22021082 TGAATGATAC
* *
22021092 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
22021132 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
22021172 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
22021212 CTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
22021252 CC-GGCTAA
1 CCGGGCTAA
22021260 ATTCTGAAGA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 6 0.06
40 96 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:22024836 original size:31 final size:31
Alignment explanation
Indices: 22024801--22024859 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
22024791 TATTCTAGTC
*
22024801 AAATTAAATTTTGTAGACAATTTATATATTG
1 AAATTAAATTTTGTAAACAATTTATATATTG
22024832 AAATTAAATTTTGTAAACAATTTATATA
1 AAATTAAATTTTGTAAACAATTTATATA
22024860 AAAATTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (31 bp):
AAATTAAATTTTGTAAACAATTTATATATTG
Found at i:22026917 original size:40 final size:40
Alignment explanation
Indices: 22026856--22026933 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
22026846 TCCCCTGAAT
*
22026856 GTTCCTCTTTCCACACTTGAAAGTCTGCATGTTCTATCAG
1 GTTCCTCTTTCCACACCTGAAAGTCTGCATGTTCTATCAG
*
22026896 GTTCCTCTTTCTACACCTGAAAGTCTGCATGTTCTATC
1 GTTCCTCTTTCCACACCTGAAAGTCTGCATGTTCTATC
22026934 TCTGCTAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.19, C:0.28, G:0.14, T:0.38
Consensus pattern (40 bp):
GTTCCTCTTTCCACACCTGAAAGTCTGCATGTTCTATCAG
Found at i:22030500 original size:19 final size:19
Alignment explanation
Indices: 22030476--22030515 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
22030466 CATACAATAC
* *
22030476 TAAAAAAGAAGAGGAAAAA
1 TAAAAAAGAAAAAGAAAAA
22030495 TAAAAAAGAAAAAGAAAAA
1 TAAAAAAGAAAAAGAAAAA
22030514 TA
1 TA
22030516 TTGCAAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (19 bp):
TAAAAAAGAAAAAGAAAAA
Found at i:22033135 original size:2 final size:2
Alignment explanation
Indices: 22033130--22033159 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
22033120 AAATACACAC
*
22033130 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22033160 GTTTTGGCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22034071 original size:17 final size:18
Alignment explanation
Indices: 22034049--22034082 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22034039 AAACATTATT
22034049 TAATTTT-TTTCAAAATA
1 TAATTTTATTTCAAAATA
*
22034066 TAATTTTATTTTAAAAT
1 TAATTTTATTTCAAAAT
22034083 TTTGTTAGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATTTTATTTCAAAATA
Found at i:22035530 original size:47 final size:45
Alignment explanation
Indices: 22035417--22035539 Score: 126
Period size: 47 Copynumber: 2.6 Consensus size: 45
22035407 GGGTTATTGT
*
22035417 GAGCTAGTGTAAGACATGTCTGGAACAT-GCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGAACATGGCACCGG-C-CATTATGA
* * *
22035463 GAGCCAGTGTATGACTATGTCTGGGACATGGCACCGG-CATTGA-GA
1 GAGCTAGTGTAAGAC-ATGTCTGGAACATGGCACCGGCCATT-ATGA
22035508 CGAGTGCTAGTGTAAGACATGTCTGGAACATG
1 -GA--GCTAGTGTAAGACATGTCTGGAACATG
22035540 CATCGGTCGC
Statistics
Matches: 64, Mismatches: 7, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
45 6 0.09
46 16 0.25
47 25 0.39
48 17 0.27
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGAACATGGCACCGGCCATTATGA
Found at i:22038712 original size:39 final size:39
Alignment explanation
Indices: 22038667--22038865 Score: 308
Period size: 39 Copynumber: 5.1 Consensus size: 39
22038657 ATTCAAGACA
22038667 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
* *
22038706 CTGGAAATGTATCCGGGCTAAATTCCCGTAAGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
* *
22038745 CTGGAAATGTATCCAGGCTAAAGTCCAGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
* *
22038784 CTGGAAATGTATCCGAGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
* * * *
22038823 TTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
22038862 CTGG
1 CTGG
22038866 TAATATAATT
Statistics
Matches: 145, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 145 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
Found at i:22050455 original size:46 final size:44
Alignment explanation
Indices: 22050402--22050670 Score: 161
Period size: 46 Copynumber: 5.8 Consensus size: 44
22050392 GGGTTATTGT
22050402 GAGCTAGTGTAAGACATGTATGGGACATGCATCAGCCACATT-ATGA-
1 GAGCTAGTGTAAGACATGTATGGGACATGCATC-G--ACATTGA-GAC
*
22050448 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAC
1 GAGCTAGTGTAAGA-CATGTATGGGACAT-GCATCGACATTGAGAC
* * * **
22050494 GAGTGCTAGTGTAAGGCATGTTTGGGACATGCATCGGCCCTGAGAC
1 GA--GCTAGTGTAAGACATGTATGGGACATGCATCGACATTGAGAC
* * * *
22050540 GCAAG-TCAGTGTAAGACATGTCTAGGACATGCATCGGC-TATGAGAT
1 G--AGCT-AGTGTAAGACATGTATGGGACATGCATCGACAT-TGAGAC
* * * * *
22050586 GCG-TCAATGTAAGACCATGTCTGGGACATAGCATCGACATAGATATGC
1 GAGCT-AGTGTAAGA-CATGTATGGGACAT-GCATCGACATTGAGA--C
* *
22050634 TAGAGCTTGTGTAAGACCATGTCTGGGACATGGCATC
1 --GAGCTAGTGTAAGA-CATGTATGGGACAT-GCATC
22050671 AGCACCTTTC
Statistics
Matches: 183, Mismatches: 22, Indels: 32
0.77 0.09 0.14
Matches are distributed among these distances:
44 11 0.06
45 21 0.11
46 76 0.42
47 28 0.15
48 17 0.09
50 29 0.16
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTATGGGACATGCATCGACATTGAGAC
Found at i:22054696 original size:40 final size:40
Alignment explanation
Indices: 22054622--22054826 Score: 335
Period size: 40 Copynumber: 5.2 Consensus size: 40
22054612 AACCCAAGTA
* *
22054622 CCTTCGGGATTTAG-CCGGATATA-TCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-AACTAGCACAAATG
*
22054661 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
22054701 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
22054741 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
22054781 CCTTC-GGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
22054820 CCTTCGG
1 CCTTCGG
22054827 ATCTTAGTCC
Statistics
Matches: 156, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 51 0.33
40 104 0.67
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:22057047 original size:43 final size:43
Alignment explanation
Indices: 22056989--22057072 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
22056979 AAACACTTTG
* * * *
22056989 TGTAACGCCCTGTACCCGAGA-CCGTTGCCGGAGTCGAACACGA
1 TGTAACACCCCGTACCCGA-ATCCGTTACCGGAATCGAACACGA
*
22057032 TGTAACACCCCGTACCCGAATCCGTTACCGGAATCGGACAC
1 TGTAACACCCCGTACCCGAATCCGTTACCGGAATCGAACAC
22057073 AAGGTGCACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 34 0.97
ACGTcount: A:0.25, C:0.35, G:0.24, T:0.17
Consensus pattern (43 bp):
TGTAACACCCCGTACCCGAATCCGTTACCGGAATCGAACACGA
Found at i:22058451 original size:40 final size:39
Alignment explanation
Indices: 22058405--22058570 Score: 203
Period size: 39 Copynumber: 4.2 Consensus size: 39
22058395 GACTAGCTCA
*
22058405 AATGCCTTCGGGAC-AAACCCCGG-TTATAGTAACTCGCACG
1 AATGCCTTCGGG-CTTAA-CCCGGATT-TAGTAACTCGCACG
*
22058445 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCAC-
1 AATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCACG
* * *
22058484 AAGTGCCTTCGGGCTTAATCCGGATTTATTAACTCGCACA
1 AA-TGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCACG
*
22058524 AATGCCTTCGGGCTTAACCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCACG
*
22058563 AACGCCTT
1 AATGCCTT
22058571 TGGATCTTAG
Statistics
Matches: 115, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
39 67 0.58
40 44 0.38
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCACG
Found at i:22061627 original size:46 final size:46
Alignment explanation
Indices: 22061557--22061685 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
22061547 TGTAACCCGC
* * *
22061557 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
22061603 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
22061649 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22061686 TGCCCAAATA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:22068868 original size:40 final size:40
Alignment explanation
Indices: 22068697--22068861 Score: 271
Period size: 40 Copynumber: 4.2 Consensus size: 40
22068687 AACCCAAGTA
* * *
22068697 CCTTC-GGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
22068735 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
22068775 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
22068815 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
22068855 CCTTCGG
1 CCTTCGG
22068862 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
38 5 0.04
39 7 0.06
40 107 0.90
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:22076016 original size:13 final size:12
Alignment explanation
Indices: 22075988--22076045 Score: 53
Period size: 13 Copynumber: 4.6 Consensus size: 12
22075978 TTTGACACTT
**
22075988 TGTTTTAAAATA
1 TGTTTTAAGTTA
22076000 TGTTTTCAAGTTA
1 TGTTTT-AAGTTA
*
22076013 TGTTTTTAAGCTA
1 TG-TTTTAAGTTA
*
22076026 TGTTTTAAATATA
1 TGTTTTAAGT-TA
22076039 TGTTTTA
1 TGTTTTA
22076046 TGTGTGTTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
12 12 0.32
13 22 0.58
14 4 0.11
ACGTcount: A:0.29, C:0.03, G:0.12, T:0.55
Consensus pattern (12 bp):
TGTTTTAAGTTA
Found at i:22076572 original size:58 final size:59
Alignment explanation
Indices: 22076461--22076577 Score: 209
Period size: 58 Copynumber: 2.0 Consensus size: 59
22076451 CTCAGCCATT
* *
22076461 CTAATAAGACAAATATGTGAGCATGTTTTCCTGTTATTCGTTTTCAAACAATAACAAAC
1 CTAATAAGAAAAATATGTGAGCATGTTTTCCTGTTATTCATTTTCAAACAATAACAAAC
22076520 CTAATAAGAAAAATATGTGAGCATG-TTTCCTGTTATTCATTTTCAAACAATAACAAAC
1 CTAATAAGAAAAATATGTGAGCATGTTTTCCTGTTATTCATTTTCAAACAATAACAAAC
22076578 TAAGTTTTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
58 32 0.57
59 24 0.43
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (59 bp):
CTAATAAGAAAAATATGTGAGCATGTTTTCCTGTTATTCATTTTCAAACAATAACAAAC
Found at i:22078218 original size:40 final size:40
Alignment explanation
Indices: 22078125--22078341 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
22078115 AAGCCAAGTA
* * *
22078125 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
22078163 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22078203 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
22078243 CCTTCGGGACTTAG-CCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22078282 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
22078323 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22078342 TTATCATCCA
Statistics
Matches: 161, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
38 12 0.07
39 54 0.34
40 67 0.42
41 24 0.15
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22078261 original size:79 final size:78
Alignment explanation
Indices: 22078125--22078338 Score: 274
Period size: 79 Copynumber: 2.7 Consensus size: 78
22078115 AAGCCAAGTA
* * * * *
22078125 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATAA
*
22078188 TAACTCGCACCAATG
64 TAACTCGCACAAATG
*
22078203 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGGATGTAAT
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAAT
22078268 AACTCGCACAAATG
65 AACTCGCACAAATG
22078282 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACT--CGCACAAATGCCTTCGGGACTTAGCC
22078339 CGGTTATCAT
Statistics
Matches: 122, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
78 14 0.11
79 66 0.54
80 38 0.31
81 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAATA
ACTCGCACAAATG
Found at i:22084992 original size:37 final size:37
Alignment explanation
Indices: 22084933--22085060 Score: 211
Period size: 37 Copynumber: 3.4 Consensus size: 37
22084923 TTATTACGAA
* * *
22084933 GTCTTACCTGGACATAATCTCCACACATAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
22084970 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
*
22085007 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
22085044 GTCTCACCCGGAACATA
1 GTCTCACCCGG-ACATA
22085061 TTTCCAAGTT
Statistics
Matches: 85, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
37 80 0.94
38 5 0.06
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTCACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:22085158 original size:48 final size:48
Alignment explanation
Indices: 22085100--22085325 Score: 335
Period size: 48 Copynumber: 4.7 Consensus size: 48
22085090 TGTTACAACA
* *
22085100 TTCACGTTAGCCATTCGGCTTTACCACATATATATATCACACATACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATACAT
*
22085148 TTCACATTAGCCATTCGGCTTTACTACATATACATATCACACATACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATACAT
* * * * *
22085196 TTCACACTAGCCATTCGGCTTTACTACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATACAT
*
22085244 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATACAT
* *
22085292 TTCACATTAGCCATTAGGCCTTATCACACATATA
1 TTCACATTAGCCATTCGGCTTTA-C-CACATATA
22085326 TACACTTTCA
Statistics
Matches: 163, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
48 154 0.94
49 1 0.01
50 8 0.05
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATACAT
Found at i:22085418 original size:49 final size:49
Alignment explanation
Indices: 22085301--22085421 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
22085291 TTTCACATTA
*
22085301 GCCATTAGGCCTTATCACACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
22085350 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
22085399 GCCATTAGGCCTTATCACATATA
1 GCCATTAGGCCTTATCACATATA
22085422 CTATTATGTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:22091620 original size:40 final size:40
Alignment explanation
Indices: 22091561--22091702 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
22091551 AAATTGAATG
* * *
22091561 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
22091601 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
22091641 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
22091681 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
22091703 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:22091703 original size:40 final size:39
Alignment explanation
Indices: 22091600--22091728 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
22091590 TGCTGGAAAT
* * *
22091600 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
22091640 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
22091680 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
22091720 TATATCCGG
1 TATATCCGG
22091729 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:22099778 original size:40 final size:40
Alignment explanation
Indices: 22099719--22099860 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
22099709 AAATTGAATG
* * *
22099719 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
22099759 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
22099799 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
22099839 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
22099861 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:22099861 original size:40 final size:39
Alignment explanation
Indices: 22099758--22099886 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
22099748 TGCTGGAAAT
* * *
22099758 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
22099798 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
22099838 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
22099878 TATATCCGG
1 TATATCCGG
22099887 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:22102872 original size:40 final size:40
Alignment explanation
Indices: 22102813--22102954 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
22102803 AAATTGAATG
* * *
22102813 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
22102853 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
22102893 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
22102933 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
22102955 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:22102955 original size:40 final size:39
Alignment explanation
Indices: 22102852--22102980 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
22102842 TGCTGGAAAT
* * *
22102852 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
22102892 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
22102932 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
22102972 TATATCCGG
1 TATATCCGG
22102981 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:22111038 original size:40 final size:40
Alignment explanation
Indices: 22110936--22111102 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
22110926 AAATTGAATG
* * * * *
22110936 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* ***
22110976 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
22111016 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
22111056 CTATCCGGGCT-AGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
22111095 ATATCCGG
1 ATATCCGG
22111103 TTATATTCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 31 0.29
40 74 0.70
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:22112732 original size:37 final size:37
Alignment explanation
Indices: 22112673--22112744 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
22112663 AGCTCCGACG
* *
22112673 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTCACCCGGACA
* *
22112710 AAATCTCCACATGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTCACCCGGA
22112745 ATATATTTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTCACCCGGACA
Found at i:22113000 original size:47 final size:47
Alignment explanation
Indices: 22112907--22113091 Score: 221
Period size: 47 Copynumber: 4.0 Consensus size: 47
22112897 TTTCACACTA
* * * *
22112907 GCCATTCGGCTTTA-C-CACATATGCATATCTCATATTCATCATATTG
1 GCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCATCACATTG
* *
22112953 GCCATTTGGCCTTATCACACATATGCATGCTGACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
* *
22113000 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
* * * * **
22113047 GCCATTCGACCTTATCTCATATATACATATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACAT
22113092 AAAATCCTAA
Statistics
Matches: 123, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
46 12 0.10
47 100 0.81
48 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
Found at i:22113092 original size:25 final size:25
Alignment explanation
Indices: 22113013--22113092 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
22113003 ATTCGGCCTT
*
22113013 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATATTCACATTC
* * *
22113038 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATGCATATTC-ACATTC
* *
22113060 ATCTCATATATACATATTCACATTC
1 ATCACATATATGCATATTCACATTC
22113085 ATCACATA
1 ATCACATA
22113093 AAATCCTAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 6 0.15
25 18 0.45
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (25 bp):
ATCACATATATGCATATTCACATTC
Found at i:22119465 original size:43 final size:42
Alignment explanation
Indices: 22119380--22119488 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 42
22119370 CTTACTAATT
* * * *
22119380 CCATATCCCAGATATGGTCTTACATGTGATCTCTTATTGATG
1 CCATAACCCAGATATGGTCTTACATGAGATCTCATATCGATG
* * *
22119422 CCAATAACCTAGCTATGGTCTTACATGA-AGTCTCATCTCGATG
1 CC-ATAACCCAGATATGGTCTTACATGAGA-TCTCATATCGATG
*
22119465 CCATATCCCAGATATGGTCTTACA
1 CCATAACCCAGATATGGTCTTACA
22119489 CGAAAATCTC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 22 0.40
43 33 0.60
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.33
Consensus pattern (42 bp):
CCATAACCCAGATATGGTCTTACATGAGATCTCATATCGATG
Found at i:22119828 original size:16 final size:16
Alignment explanation
Indices: 22119804--22119835 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22119794 AGTTCAGCCC
*
22119804 AAAATTTATATTTTGG
1 AAAAATTATATTTTGG
22119820 AAAAATTATATTTTGG
1 AAAAATTATATTTTGG
22119836 CCCCTTAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (16 bp):
AAAAATTATATTTTGG
Found at i:22121673 original size:19 final size:22
Alignment explanation
Indices: 22121649--22121690 Score: 63
Period size: 19 Copynumber: 2.0 Consensus size: 22
22121639 TTTCAATAAT
22121649 AATAATAAT-A-AAAT-AAATA
1 AATAATAATGAGAAATCAAATA
22121668 AATAATAATGAGAAATCAAATA
1 AATAATAATGAGAAATCAAATA
22121690 A
1 A
22121691 TAGAATATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 9 0.45
20 1 0.05
21 4 0.20
22 6 0.30
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (22 bp):
AATAATAATGAGAAATCAAATA
Found at i:22121692 original size:25 final size:26
Alignment explanation
Indices: 22121643--22121697 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
22121633 TGGGATTTTC
22121643 AATAATAATAATAATAAAATAAATA-
1 AATAATAATAATAATAAAATAAATAG
*
22121668 AATAATAATGAGA-AATCAAAT-AATAG
1 AATAATAAT-A-ATAATAAAATAAATAG
22121694 AATA
1 AATA
22121698 TGTCAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
25 13 0.50
26 12 0.46
27 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.25
Consensus pattern (26 bp):
AATAATAATAATAATAAAATAAATAG
Found at i:22125601 original size:23 final size:23
Alignment explanation
Indices: 22125575--22125619 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
22125565 TTTTACTTAG
22125575 CTTTTCCTAGCATACCAATGAGA
1 CTTTTCCTAGCATACCAATGAGA
22125598 CTTTTCCTAGCATACCAATGAG
1 CTTTTCCTAGCATACCAATGAG
22125620 CCAATCTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (23 bp):
CTTTTCCTAGCATACCAATGAGA
Found at i:22133485 original size:723 final size:721
Alignment explanation
Indices: 22131604--22133814 Score: 3443
Period size: 723 Copynumber: 3.1 Consensus size: 721
22131594 ACCGTGAAAT
*
22131604 GAAATCCATCGTAACTCTATCCCATTTCCACTCGAG-AATAGTCACAGGCTGAAGTAAACCTGAA
1 GAAATCCATCGTAACTCTATCCCATTTCCACTCG-GTTATAGTCACAGGCTGAAGTAAACCTGAA
*
22131668 GGCACTTGATGTTTGGCTTTCACTTGTTGACAAATCAAACATCTCGTTACAAACTCTGAAATGTC
65 GGCACTTGATGTTTGGCTTTCACTTGTTGACAAATCAAACATCTCGTTACAAACTATGAAATGTC
22131733 TCATTTCATGCCTGACCACCAATACAATTCCTTCAAAT-ATTATACATCTTTGTTA-TTCTAGGA
130 TCATTTCATGCCTGACCACCAATACAATTCCTTCAAATCATTATACATCTTTG-TACTTCTAGGA
* * *
22131796 TGAACAGATAGAAAACCATTACGTGCCTCATGAAGAATTTTACGAATCATTTCAGTATCTCTCGG
194 TGAACAGATAGAAAACCATTATGTGCCTCATGAA-AATTTTTCGAATCAGTTCAGTATCTCTCGG
*
22131861 TACACAAATCCTACCTT-GTAACTTCAAACAATCATCGGATCCAATCTGATATTTAGAATCACTA
258 TACACAAATCCTACCTTAG-AACCTCAAACAATCATCGGATCCAATCTGATATTTAGAATCACTA
* * * * *
22131925 TTAGATTGGCACTGAACTCTTTTAGCTTCCAACTCAGTATCACCTTTCTGAGCTTCAAAATTTGC
322 TTTGATTGGCACCGAACTCTTTTACCTTGCAACTCATTATCACCTTTCTGAGCTTCAAAATTTGC
* *
22131990 TAAAGAAATACCAGTCTAGCTTTCAACTAGGCCAGAATCGATCCATCATCAGATAAAGTTAAACG
387 TAAAGAAATACCGGTCTAGCTTTCAACTCGGCCAGAATCGATCCATCATCAGATAAAGTTAAACG
*
22132055 CATATTCATTGCCCTCAAAGCAAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTT
452 CGTATTCATTGCCCTCAAAGCAAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTT
* * * * * *
22132120 TCCCTGGGTGATAGTTGATCACTAATTCATAATCCTTCAACAGCTCGAGCTATCTTTGTTGTCGA
517 TCCCTTGGTGATAGTCGATCACTAATTCATAATCCTTCAATAGCTCGAGCCATCTTCGTTATCGA
*
22132185 AAATTCAAATCTT-TCTGAGTCATCAAATACTTTAAAATCTTGTGATCAGTAAAGATGTGACACT
582 AAATTCAAATCTTCT-TGAGTCATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACT
* **
22132249 TCTCACCAAATAAGTGGTGTCTCCTTATTTTTAAAGTGAACACAATAGCAGCCAATTCCAAGTCC
646 TCTCACCAAATAAGTTGTGTCTCCCAATTTTTAAAGTGAACACAATAGCAGCCAATTCCAAGTCC
* *
22132314 TGTGTTGATAC
711 TGCGTCGATAC
* * * *
22132325 GAAATCCATCGTAACTCTATCCAATTTCCACTTGGGTATAGTCA-TGGCTGAAGTAAACCTGAAG
1 GAAATCCATCGTAACTCTATCCCATTTCCACTCGGTTATAGTCACAGGCTGAAGTAAACCTGAAG
* * * * *
22132389 GCACTTGATTTTTGGCTTTCACTTGTTGACAAATCAAACATCTCGTTACAAAATTTGAAAAGTTT
66 GCACTTGATGTTTGGCTTTCACTTGTTGACAAATCAAACATCTCGTTACAAACTATGAAATGTCT
* * *
22132454 CGTTTCACGCCTGACCACCAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCCAGGATG
131 CATTTCATGCCTGACCACCAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCTAGGATG
* * *
22132519 AACAGATAAAAAACCATTATGTGCCTCATGAAAAATTTTCTGAATCAGTTTAGTATCTCTCGGTA
196 AACAGATAGAAAACCATTATGTGCCTCATGAAAATTTTTC-GAATCAGTTCAGTATCTCTCGGTA
* * * *
22132584 CACAAATCCTACCTCAGAACCTCAAACAATCATCAGATCCAATCTGATATTCAAAATCACTATTT
260 CACAAATCCTACCTTAGAACCTCAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTT
* * * * *
22132649 GATTGGCACCGAACTCTTTTACCTTGCAACTCATTATAACCTTTCTGATCCTCGCAAATTTGTTA
325 GATTGGCACCGAACTCTTTTACCTTGCAACTCATTATCACCTTTCTGAGCTTC-AAAATTTGCTA
* * * *
22132714 AAGAAACACTGGTCTTGCTTTCAACTCGGCCAGAATCGATCCATCATCAGATAAATTTAAACGCG
389 AAGAAATACCGGTCTAGCTTTCAACTCGGCCAGAATCGATCCATCATCAGATAAAGTTAAACGCG
* ** * * **
22132779 CATTCATTGGTCTCAAAGCAAACAAAGTCTTTCTACTTAAAGCATCTGTGACTATATTCGCTTTC
454 TATTCATTGCCCTCAAAGCAAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTTC
22132844 CCTTGGTGATAGTCGATCACTAATTCATAATCCTTCAATAGCTCGAGCCATCTTCGTTATCGAAA
519 CCTTGGTGATAGTCGATCACTAATTCATAATCCTTCAATAGCTCGAGCCATCTTCGTTATCGAAA
*
22132909 ATTCAAATCTTCTTGAGTCATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTAACACTTCT
584 ATTCAAATCTTCTTGAGTCATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACTTCT
*
22132974 CACCAAATAAGTTGTGTCTCCCAATTTTTAAAGCGAACACAATAGCAGCCAATTCCAAGTCCTGC
649 CACCAAATAAGTTGTGTCTCCCAATTTTTAAAGTGAACACAATAGCAGCCAATTCCAAGTCCTGC
22133039 GTCGATAC
714 GTCGATAC
*
22133047 AAAATCCATCGTAACTCTATCCCATTTCCACTCGGTTATAGTCACAGGCTGAAGTAAACCTGAAG
1 GAAATCCATCGTAACTCTATCCCATTTCCACTCGGTTATAGTCACAGGCTGAAGTAAACCTGAAG
**
22133112 GCACTTGATGTTAAGCTTTCACTTGTTGACAAATCAAACATCTCGTTACAAACTATGAAATGTCT
66 GCACTTGATGTTTGGCTTTCACTTGTTGACAAATCAAACATCTCGTTACAAACTATGAAATGTCT
* * * *
22133177 CATTTCATGCCTGACCAACAATACGATTCCTTCAAATCATTACACATCTTTGTACTTCTAGGATA
131 CATTTCATGCCTGACCACCAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCTAGGATG
* *
22133242 AACAGATAGAAAACCATTATGTGCCTTATGAATAATTTTTCGAATCAGTTCAATATCTCTCGGTA
196 AACAGATAGAAAACCATTATGTGCCTCATGAA-AATTTTTCGAATCAGTTCAGTATCTCTCGGTA
22133307 CACAAATCCTACCTTAGAACCTCAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTT
260 CACAAATCCTACCTTAGAACCTCAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTT
* *
22133372 GATTGGCA-GGAAACTCTTTTACCTTGCAACTCATTATCACTTTTCTGAGCTTCAAAAATTTGCT
325 GATTGGCACCG-AACTCTTTTACCTTGCAACTCATTATCACCTTTCTGAGCTTC-AAAATTTGCT
* * *
22133436 AAAGAAATACCGGTCTAGCTTTCGACTCGGCCAGAATCGATCCATCATCAAAGAAAGTTAAACGC
388 AAAGAAATACCGGTCTAGCTTTCAACTCGGCCAGAATCGATCCATCATCAGATAAAGTTAAACGC
* *
22133501 GTTTTCATTGCCCTCAAAGCAAACAAAGCCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTT
453 GTATTCATTGCCCTCAAAGCAAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTT
* * *
22133566 CCCTTGGTGATAGCCGATCACTAATTCATAATCCAAT-AATAGCTCGAGCCATCTTCGTTTTC-A
518 CCCTTGGTGATAGTCGATCACTAATTCATAATCC-TTCAATAGCTCGAGCCATCTTCGTTATCGA
*
22133629 TAAATTCAAATCTTCTTGAGTCATCAAATACTTTAAACTCTTGTGATCAGTAAATATGTGACACT
582 -AAATTCAAATCTTCTTGAGTCATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACT
*
22133694 TCTCACCAAATAAG-TGATGGCTCCCAATTTTTAAAGTGAACACAATAGCAGCCAATTCCAAGTC
646 TCTCACCAAATAAGTTG-TGTCTCCCAATTTTTAAAGTGAACACAATAGCAGCCAATTCCAAGTC
*
22133758 CTGCGTCGATAT
710 CTGCGTCGATAC
** *
22133770 GAAATCCATCGTAACTCTGCCCCATTTCTACTCGGTTATAGTCAC
1 GAAATCCATCGTAACTCTATCCCATTTCCACTCGGTTATAGTCAC
22133815 TTGTTGACAA
Statistics
Matches: 1352, Mismatches: 125, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
720 123 0.09
721 217 0.16
722 357 0.26
723 647 0.48
724 8 0.01
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (721 bp):
GAAATCCATCGTAACTCTATCCCATTTCCACTCGGTTATAGTCACAGGCTGAAGTAAACCTGAAG
GCACTTGATGTTTGGCTTTCACTTGTTGACAAATCAAACATCTCGTTACAAACTATGAAATGTCT
CATTTCATGCCTGACCACCAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCTAGGATG
AACAGATAGAAAACCATTATGTGCCTCATGAAAATTTTTCGAATCAGTTCAGTATCTCTCGGTAC
ACAAATCCTACCTTAGAACCTCAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTTG
ATTGGCACCGAACTCTTTTACCTTGCAACTCATTATCACCTTTCTGAGCTTCAAAATTTGCTAAA
GAAATACCGGTCTAGCTTTCAACTCGGCCAGAATCGATCCATCATCAGATAAAGTTAAACGCGTA
TTCATTGCCCTCAAAGCAAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTTCCC
TTGGTGATAGTCGATCACTAATTCATAATCCTTCAATAGCTCGAGCCATCTTCGTTATCGAAAAT
TCAAATCTTCTTGAGTCATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACTTCTCA
CCAAATAAGTTGTGTCTCCCAATTTTTAAAGTGAACACAATAGCAGCCAATTCCAAGTCCTGCGT
CGATAC
Found at i:22135345 original size:723 final size:722
Alignment explanation
Indices: 22133811--22137137 Score: 4756
Period size: 721 Copynumber: 4.6 Consensus size: 722
22133801 TCGGTTATAG
* * *
22133811 TCACTTGTTGACAAATCAAACATCTCATTACAAACTATGAAATGTCTCATTTCATACCTGACCAT
1 TCACTTGTTGACAAATCAAACATCTCATTACAAACTCTGAAATGTCTCATTTCATGCCTGACCAC
* *
22133876 CAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCTACGATAAACAAATAGAAAACCATT
66 CAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCTAGGATAAACAGATAGAAAACCATT
*
22133941 ATGTGCCTTATGAATAATTTTTCGAATCAGTTCAGTATCTCTCGGTACACAAATCCTACCTCGGA
131 ATGTGCCTCATGAATAATTTTTCGAATCAGTTCAGTATCTCTCGGTACACAAATCCTACCTCGGA
* *
22134006 ACCTCAAACAATCATCGAATCCAATCTGATATTTAGAATCACTATTTGATTGGCA-TGAAACTCT
196 ACCTTAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTTGATT-GCACTG-AACTCT
* * * *
22134070 TTTACCTTGTAACTCATTATCAGC-TTTCTGAGCTTCACAAATTGGCTAAAGAAATATTGGTCTA
259 TTTAGCTTGCAACTCATTATCA-CTTTTCTGAGCTTCACAAATTTGCTAAAGAAATACTGGTCTA
** ** * * *
22134134 GCTTTCGACTCGATCAGAATCGATCCATCATCAAAGAAAGTTAAACAC-AATTTCATTGCCCTCA
323 GCTTTTAACTCGGCCAGAATCGATCCATCATCAAATAAAGTTAAACGCGTA-TTCATTGCCCTCA
* *
22134198 AAGCAAACAAAGTTTTTCTACTTAAAGCGTCTGTGACTACGTTCGCTTTCCTTGGGTGAT-GTCG
387 AAGCAAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTTCCTTGGGTGATAGTCG
* * * *
22134262 ATCACT-ATTCATAATCCTTCCATAGCTTGAGCCATCTTAGTTGTCTCAAATTCAAATCTTTCTG
452 ATCACTAAATCATAATCCTTCAATAGCTCGAGCCATCTTCGTTGTCTCAAATTCAAATCTTTCTG
* * *
22134326 AGTCATCAAATACTTTAAACTCTTGTGATCAGTACAGATGTGTCACTTCTCACCAAATAAGTGAT
517 AGTCATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACTTCTCACCAAATAAGTGGT
** * ** * *
22134391 GTCTCTGAATTTTTAAAGCAAACACAATAGCAACCAATTCCAAGTATTGCGTCTATATGAAATCC
582 GTCTCCCAATTTTTAAAGCAAACACAATAGCAGCCAATTCCAAGTCCTGCGTCGATACGAAATCC
* * * *
22134456 ATCGTAACCCTATCCCATTTCCACTC-AGTTATAGTAACAGGATGAAGTAAACCTGAAGGCACTT
647 ATCGTAACTCTATCCCATTTCCACTCTAG-TATAGTCACAGGCTGAAGTAAACCCGAAGGCACTT
22134520 GATGTTCAG-CTT
711 GATGTT-AGACTT
* *
22134532 TCACTTGTTGACAAATCAAACATCTCATTACAAACTCTGAAATGTCTCGTTTCAAGCCTGACCAC
1 TCACTTGTTGACAAATCAAACATCTCATTACAAACTCTGAAATGTCTCATTTCATGCCTGACCAC
* * *
22134597 CAATACAATTCCTTCAAATCATTATACACCTTTGTACTTCCAGGATAAACATATAGAAAACCATT
66 CAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCTAGGATAAACAGATAGAAAACCATT
* * * * **
22134662 ATGTGCCTCATGAATAATTTTTTGAATCAGTTTAGTACCTCTCGGTACACAAATTCTACCTCAAA
131 ATGTGCCTCATGAATAATTTTTCGAATCAGTTCAGTATCTCTCGGTACACAAATCCTACCTCGGA
* * *
22134727 ACCTTAAACAATCATTGGATCCAATCTGATATTTAAAATGACTATTTGATTGGCAC-GAAACTCT
196 ACCTTAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTTGATT-GCACTG-AACTCT
* * * * *
22134791 TTTACCTTGCAACTTATTATAACTTTTCTGAGCTTCACAAATTTGCTAGAGAAATACCGGTCTAG
259 TTTAGCTTGCAACTCATTATCACTTTTCTGAGCTTCACAAATTTGCTAAAGAAATACTGGTCTAG
** ** * * * * *
22134856 CTTTCGACTCGGGTAGAATCGATCCATCATCAAAGAAAGTTAAACACATTTTCATTACCCTCAAA
324 CTTTTAACTCGGCCAGAATCGATCCATCATCAAATAAAGTTAAACGCGTATTCATTGCCCTCAAA
* *
22134921 GCAAACAAAGCCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTTCCCTT-GGTGATAGCCGA
389 GCAAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTT-CCTTGGGTGATAGTCGA
* * * * * *
22134985 TCACTAACTCATAATCCAAT-AATAGCTCGAGCCATCTTTGTTTTCACAAATTCAAATCTTCCTG
453 TCACTAAATCATAATCC-TTCAATAGCTCGAGCCATCTTCGTTGTCTCAAATTCAAATCTTTCTG
*
22135049 AGTCATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACTTCTCACCAAATAACTGGT
517 AGTCATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACTTCTCACCAAATAAGTGGT
* * *
22135114 GGCTCCCAATTTTTAAAGCGAACACAATAGCAGCCAATTCCAAGTCCTGCGTCGATACGAATTCC
582 GTCTCCCAATTTTTAAAGCAAACACAATAGCAGCCAATTCCAAGTCCTGCGTCGATACGAAATCC
* * *
22135179 ATCGTAACTCTATCCCATTTCCACT-TGGTTATAGTCATAGGCTGAAGTAAACCTGAAGGCACTT
647 ATCGTAACTCTATCCCATTTCCACTCTAG-TATAGTCACAGGCTGAAGTAAACCCGAAGGCACTT
22135243 GATGTTCAG-CTT
711 GATGTT-AGACTT
* * *
22135255 TCACTTTTTGACAAATCAAACATCTCGTTACAAACTCTGAAATGTCTCGTTTCATGCCTGACCAC
1 TCACTTGTTGACAAATCAAACATCTCATTACAAACTCTGAAATGTCTCATTTCATGCCTGACCAC
* * * *
22135320 CAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCCAAGATAAATAGATAGAAAACCGTT
66 CAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCTAGGATAAACAGATAGAAAACCATT
* * ** *
22135385 ATGTGCCTCATGAAGAATTTTTCAAATTGGTTCAGTATCTCTCGGTACACAAATCCTACCTTGGA
131 ATGTGCCTCATGAATAATTTTTCGAATCAGTTCAGTATCTCTCGGTACACAAATCCTACCTCGGA
* * *
22135450 ACCTCAAACAATCATCAGATCCAATCTGATATTCAGAATCACTATTTGATTAGCACTGAACTCTT
196 ACCTTAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTTGATT-GCACTGAACTCTT
* * * * *
22135515 TTAGCTT-CAAATCATTTTCACTTTTTTGAGTTTCTCAAATTTGCTAAAGAAATACT-GTCTAGC
260 TTAGCTTGCAACTCATTATCACTTTTCTGAGCTTCACAAATTTGCTAAAGAAATACTGGTCTAGC
* * *
22135578 TTTTAAATCGGCCAGAATCGATCCATCATCAAATAAAGTTAAATGCGTATTCATTACCCTCAAAG
325 TTTTAACTCGGCCAGAATCGATCCATCATCAAATAAAGTTAAACGCGTATTCATTGCCCTCAAAG
* * * * * * *
22135643 TAAACAAAGTATTTCTACATAAAGCATCAGCGACTACGTTTGCTTTCCTTGGGTGATAGTTGATC
390 CAAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTTCCTTGGGTGATAGTCGATC
* *
22135708 ACTAAATCATAATCCTTCAATAGCTCGAGCCATCTTCATTGTCTCAAATTCAAATCTTTCTAAGT
455 ACTAAATCATAATCCTTCAATAGCTCGAGCCATCTTCGTTGTCTCAAATTCAAATCTTTCTGAGT
*
22135773 CATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACTTCTCACTAAATAAGTGGTGTC
520 CATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACTTCTCACCAAATAAGTGGTGTC
* * * *
22135838 TCCCAATTTTTAAAGCGAACACAATAGTAGCCAATTGCAAGTCCTGTGTCGATACGAAATCCATC
585 TCCCAATTTTTAAAGCAAACACAATAGCAGCCAATTCCAAGTCCTGCGTCGATACGAAATCCATC
* * * * *
22135903 GTAACTTTATCCCATTTCCACTC-ATGTATAGTC-CTAGGCAGGAGTAAACCCGAAGGTAGTTGA
650 GTAACTCTATCCCATTTCCACTCTA-GTATAGTCAC-AGGCTGAAGTAAACCCGAAGGCACTTGA
*
22135966 TGTTTGACTT
713 TGTTAGACTT
* * *
22135976 TCACTAGTTGACAAATCAAACATCTCGTTATAAACTCTGAAATGTCTCATTTCATGCCTG-CCTA
1 TCACTTGTTGACAAATCAAACATCTCATTACAAACTCTGAAATGTCTCATTTCATGCCTGACC-A
* * *
22136040 CCAATACAATTCTTTCAAATCATTATACATCTTTGTACTTATAGGATGAACAGATAGAAAACCAT
65 CCAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCTAGGATAAACAGATAGAAAACCAT
* * * * *
22136105 TATGTGCCTCATAAAGAATTTTCCGAATCAGTTCAGTATCTCTTGGTACACAAATCCTACCTCGA
130 TATGTGCCTCATGAATAATTTTTCGAATCAGTTCAGTATCTCTCGGTACACAAATCCTACCTCGG
22136170 AACCTTAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTTGA-TGCACTGAACTCTT
195 AACCTTAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTTGATTGCACTGAACTCTT
* * * *
22136234 TTAGATTGCAACTCATTATCACTTTTCTGAGCTTCGCAAATTTTCTAAAGAAATACTAGTCTAGC
260 TTAGCTTGCAACTCATTATCACTTTTCTGAGCTTCACAAATTTGCTAAAGAAATACTGGTCTAGC
22136299 TTTTAACTCGGCCAGAATCGATCCATCATCAAATAAAGTTAAACGCGTATTCATTGCCCTCAAAG
325 TTTTAACTCGGCCAGAATCGATCCATCATCAAATAAAGTTAAACGCGTATTCATTGCCCTCAAAG
* * * *
22136364 TAAACAAAGTCTTTCTACTTAATGCGTCTGCGACTATGTTCGCTTTCCTTGGGTGATAGTTGATC
390 CAAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTTCCTTGGGTGATAGTCGATC
* *
22136429 ACTAAATCATAATCCTTCAATAGATCGAGCCATCTTCGTTATCTCAAATTCAAATCTTTCTGAGT
455 ACTAAATCATAATCCTTCAATAGCTCGAGCCATCTTCGTTGTCTCAAATTCAAATCTTTCTGAGT
*
22136494 CATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTAACACTTCTCACCAAATAAGTGGTGTC
520 CATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACTTCTCACCAAATAAGTGGTGTC
22136559 TCCCAATTTTTAAAGCAAACACAATAGCAGCCAATTCCAAGTCCTGCGTCGATACGAAATCCATC
585 TCCCAATTTTTAAAGCAAACACAATAGCAGCCAATTCCAAGTCCTGCGTCGATACGAAATCCATC
* * * * * *
22136624 GTAACTTTATCCCATTTCCACTCAAGTATAGCCACAGGCT-AGAGTAACCCCGAAGGTAGTTGAT
650 GTAACTCTATCCCATTTCCACTCTAGTATAGTCACAGGCTGA-AGTAAACCCGAAGGCACTTGAT
*
22136688 GTTTGACTT
714 GTTAGACTT
* *
22136697 TCACTTGTTGACAAATCAAACATCTCATTATAAACTCTGAAATGTCTCATTTCATGCCTGCCCAC
1 TCACTTGTTGACAAATCAAACATCTCATTACAAACTCTGAAATGTCTCATTTCATGCCTGACCAC
* * *
22136762 CAATACAATTTCTTCAAATCATTATACATATTTGTACTTCTAGGATGAACAGATAGAAAACCATT
66 CAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCTAGGATAAACAGATAGAAAACCATT
* * * *
22136827 ATATGCCTCAT-CATGAA-TTTTCTGAATCAGTTCAGTATCTCTCAGTACACAAATCCTACCGCG
131 ATGTGCCTCATGAAT-AATTTTTC-GAATCAGTTCAGTATCTCTCGGTACACAAATCCTACCTCG
*
22136890 GAACC-TAAAAAATCATCGGATCCAATCTGATATTTAGAATCACTATTTGA-TGCACTGAACTCT
194 GAACCTTAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTTGATTGCACTGAACTCT
* * *
22136953 TTTAGCTTGCAACTCATTATCACCTTTCTGAGCTTCACAAATTTTCTAAAGAAATATTGGTCTAG
259 TTTAGCTTGCAACTCATTATCACTTTTCTGAGCTTCACAAATTTGCTAAAGAAATACTGGTCTAG
* *
22137018 CTTTTAACTCAGCCAGAATCGATCCATCATCAAATAAAGTTAAACGCGTATTCATTGCCTTCAAA
324 CTTTTAACTCGGCCAGAATCGATCCATCATCAAATAAAGTTAAACGCGTATTCATTGCCCTCAAA
* ** * *
22137083 GCAAACAAAGTCTTTCTACTTAAAGCGTTTAAGACTACGTTCACTTTCCCTGGGT
389 GCAAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTTCCTTGGGT
22137138 AATTGTAACG
Statistics
Matches: 2355, Mismatches: 227, Indels: 49
0.90 0.09 0.02
Matches are distributed among these distances:
719 19 0.01
720 285 0.12
721 1519 0.65
722 58 0.02
723 472 0.20
724 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (722 bp):
TCACTTGTTGACAAATCAAACATCTCATTACAAACTCTGAAATGTCTCATTTCATGCCTGACCAC
CAATACAATTCCTTCAAATCATTATACATCTTTGTACTTCTAGGATAAACAGATAGAAAACCATT
ATGTGCCTCATGAATAATTTTTCGAATCAGTTCAGTATCTCTCGGTACACAAATCCTACCTCGGA
ACCTTAAACAATCATCGGATCCAATCTGATATTTAGAATCACTATTTGATTGCACTGAACTCTTT
TAGCTTGCAACTCATTATCACTTTTCTGAGCTTCACAAATTTGCTAAAGAAATACTGGTCTAGCT
TTTAACTCGGCCAGAATCGATCCATCATCAAATAAAGTTAAACGCGTATTCATTGCCCTCAAAGC
AAACAAAGTCTTTCTACTTAAAGCGTCTGCGACTACGTTCGCTTTCCTTGGGTGATAGTCGATCA
CTAAATCATAATCCTTCAATAGCTCGAGCCATCTTCGTTGTCTCAAATTCAAATCTTTCTGAGTC
ATCAAATACTTTAAACTCTTGTGATCAGTAAAGATGTGACACTTCTCACCAAATAAGTGGTGTCT
CCCAATTTTTAAAGCAAACACAATAGCAGCCAATTCCAAGTCCTGCGTCGATACGAAATCCATCG
TAACTCTATCCCATTTCCACTCTAGTATAGTCACAGGCTGAAGTAAACCCGAAGGCACTTGATGT
TAGACTT
Found at i:22137402 original size:21 final size:21
Alignment explanation
Indices: 22137378--22137433 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
22137368 GAAACAAGGC
22137378 ACACGCCCATGTGGAAGGACA
1 ACACGCCCATGTGGAAGGACA
*
22137399 ACACGCCTATGTGGAAGGACA
1 ACACGCCCATGTGGAAGGACA
*
22137420 ACACGCCCGTGTGG
1 ACACGCCCATGTGG
22137434 CCATTTCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.29, C:0.29, G:0.30, T:0.12
Consensus pattern (21 bp):
ACACGCCCATGTGGAAGGACA
Found at i:22138726 original size:47 final size:46
Alignment explanation
Indices: 22138619--22138794 Score: 157
Period size: 47 Copynumber: 3.8 Consensus size: 46
22138609 AGCATATTGG
* **
22138619 TGCCAATGCCATGTCCCAGACATGGTCTTACA-TTGGCTTACGTCTCGA
1 TGCCAATG-CATGTCCCAGACATGGTCTTACACTAGGC-T-CGTCTAAA
* *
22138667 -GCCCGATGCATGTTCCAGACAT-GTCTTACACTAGCGCTCGTCTAAA
1 TG-CCAATGCATGTCCCAGACATGGTCTTACACTAG-GCTCGTCTAAA
**
22138713 TGCCAATGCCATGTCATAGACATGGTCTTACACT-GGCTC-TCGTAATA
1 TGCCAATG-CATGTCCCAGACATGGTCTTACACTAGGCTCGTC-TAA-A
*
22138760 TGGCCTATGCATGTCCCAGACAT-GTCTTACACTAG
1 T-GCCAATGCATGTCCCAGACATGGTCTTACACTAG
22138795 CTCACACAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
45 2 0.02
46 36 0.34
47 45 0.42
48 23 0.22
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
TGCCAATGCATGTCCCAGACATGGTCTTACACTAGGCTCGTCTAAA
Found at i:22138742 original size:94 final size:94
Alignment explanation
Indices: 22138619--22138795 Score: 243
Period size: 94 Copynumber: 1.9 Consensus size: 94
22138609 AGCATATTGG
* * * *
22138619 TGCCAATGCCATGTCCCAGACATGGTCTTACATTGGCT-TACGT-CTCGA-GCCCGATGCATGTT
1 TGCCAATGCCATGTCACAGACATGGTCTTACACTGGCTCT-CGTAAT--ATGCCCGATGCATGTC
22138681 CCAGACATGTCTTACACTAGCGCTCGTCTAAA
63 CCAGACATGTCTTACACTAGCGCTCGTCTAAA
* * *
22138713 TGCCAATGCCATGTCATAGACATGGTCTTACACTGGCTCTCGTAATATGGCCTATGCATGTCCCA
1 TGCCAATGCCATGTCACAGACATGGTCTTACACTGGCTCTCGTAATATGCCCGATGCATGTCCCA
22138778 GACATGTCTTACACTAGC
66 GACATGTCTTACACTAGC
22138796 TCACACAAGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
93 1 0.01
94 70 0.96
95 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
TGCCAATGCCATGTCACAGACATGGTCTTACACTGGCTCTCGTAATATGCCCGATGCATGTCCCA
GACATGTCTTACACTAGCGCTCGTCTAAA
Found at i:22142901 original size:23 final size:24
Alignment explanation
Indices: 22142871--22142927 Score: 82
Period size: 23 Copynumber: 2.4 Consensus size: 24
22142861 GAGTTGATGG
*
22142871 ACAGTAAGCTCTATG-GAGCTG-AA
1 ACAGTAAGCTCT-GGCGAGCTGAAA
22142894 ACAGTAAGCTCTGGCGAGCTGAAA
1 ACAGTAAGCTCTGGCGAGCTGAAA
22142918 ACAGTAAGCT
1 ACAGTAAGCT
22142928 GTTATGAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
22 1 0.03
23 18 0.58
24 12 0.39
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (24 bp):
ACAGTAAGCTCTGGCGAGCTGAAA
Found at i:22149832 original size:40 final size:40
Alignment explanation
Indices: 22149759--22149966 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
22149749 CAATTGAATG
* * * * * *
22149759 ATATCCGGGCTAAGTCCCAAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * *
22149799 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
22149839 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * **
22149879 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * **
22149919 CTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
22149959 ATATCCGG
1 ATATCCGG
22149967 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
39 5 0.04
40 133 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:22149902 original size:80 final size:80
Alignment explanation
Indices: 22149760--22149966 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
22149750 AATTGAATGA
* * * ** * ** * *
22149760 TATCCGGGCTAAGTCCCAAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
22149825 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* *
22149838 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGC
* *
22149903 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
22149920 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
22149967 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:22153648 original size:2 final size:2
Alignment explanation
Indices: 22153641--22153673 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
22153631 GTATAACCCA
22153641 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22153674 AGTTAAACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22156171 original size:476 final size:476
Alignment explanation
Indices: 22155262--22156233 Score: 1883
Period size: 476 Copynumber: 2.0 Consensus size: 476
22155252 AATACACATA
* *
22155262 TCATATACA-CATATTTTCTTAATTTTCACTTACAGGATTCGTAACAAATAGCCAATGTTTTTAC
1 TCATAT-CAGCATATATACTTAATTTTCACTTACAGGATTCGTAACAAATAGCCAATGTTTTTAC
22155326 TTACCTTTTCTCAAGTAGGTGAAAAGTTAACTCTTACCTGACATATAGCTCATTTTACACATTTA
65 TTACCTTTTCTCAAGTAGGTGAAAAGTTAACTCTTACCTGACATATAGCTCATTTTACACATTTA
22155391 AAATTATTATACCTTTGCCCGATGAACCATTCGAAATTGGATAGGACACTCGGATAATCACACAA
130 AAATTATTATACCTTTGCCCGATGAACCATTCGAAATTGGATAGGACACTCGGATAATCACACAA
22155456 GTCGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAGTCACATATCGATGCCACTGTCCCA
195 GTCGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAGTCACATATCGATGCCACTGTCCCA
22155521 GACAGGGTCTTACTCTAAAACACATATCGAAATCACATATCGATGCCATGGTCTTACTCGCACAC
260 GACAGGGTCTTACTCTAAAACACATATCGAAATCACATATCGATGCCATGGTCTTACTCGCACAC
22155586 GTATATCGGAATACTATATCATGACATATGTATCCTAACTATTCCTAATGTTCATATGGGGATTC
325 GTATATCGGAATACTATATCATGACATATGTATCCTAACTATTCCTAATGTTCATATGGGGATTC
*
22155651 CGGACGTCGTAACTCGGTCGAAACGATTGCATGAACATAGTTAGCATGCTTACACATTCGGCATT
390 CGGACGTCGTAACTCGGTCGAAACGATTGCATGAACATAGTTAGCATGCTTACACATTCGACATT
22155716 AGCACATATTAATTCATATATT
455 AGCACATATTAATTCATATATT
22155738 TCATATCAGCATATATACTTAATTTTCACTTACAGGATTCGTAACAAATAGCCAATGTTTTTACT
1 TCATATCAGCATATATACTTAATTTTCACTTACAGGATTCGTAACAAATAGCCAATGTTTTTACT
22155803 TACCTTTTCTCAAGTAGGTGAAAAGTTAACTCTTACCTGACATATAGCTCATTTTACACATTTAA
66 TACCTTTTCTCAAGTAGGTGAAAAGTTAACTCTTACCTGACATATAGCTCATTTTACACATTTAA
22155868 AATTATTATACCTTTGCCCGATGAACCATTCGAAATTGGATAGGACACTCGGATAATCACACAAG
131 AATTATTATACCTTTGCCCGATGAACCATTCGAAATTGGATAGGACACTCGGATAATCACACAAG
22155933 TCGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAGTCACATATCGATGCCACTGTCCCAG
196 TCGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAGTCACATATCGATGCCACTGTCCCAG
*
22155998 ACAGGGTCTTACTCTAAAACACATATCGGAATCACATATCGATGCCATGGTCTTACTCGCACACG
261 ACAGGGTCTTACTCTAAAACACATATCGAAATCACATATCGATGCCATGGTCTTACTCGCACACG
*
22156063 TATATCGGAATACTATATCATGACATATGTATCCTAACTATTCCTAATGTTCATATGGGGCTTCC
326 TATATCGGAATACTATATCATGACATATGTATCCTAACTATTCCTAATGTTCATATGGGGATTCC
22156128 GGACGTCGTAACTCGGTCGAAACGATTGCATGAACATAGTTAGCATGCTTACACATTCGACATTA
391 GGACGTCGTAACTCGGTCGAAACGATTGCATGAACATAGTTAGCATGCTTACACATTCGACATTA
22156193 GCACATATTAATTCATATATT
456 GCACATATTAATTCATATATT
22156214 TCATATCAGCATATATACTT
1 TCATATCAGCATATATACTT
22156234 TACATTTAAT
Statistics
Matches: 490, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
475 2 0.00
476 488 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (476 bp):
TCATATCAGCATATATACTTAATTTTCACTTACAGGATTCGTAACAAATAGCCAATGTTTTTACT
TACCTTTTCTCAAGTAGGTGAAAAGTTAACTCTTACCTGACATATAGCTCATTTTACACATTTAA
AATTATTATACCTTTGCCCGATGAACCATTCGAAATTGGATAGGACACTCGGATAATCACACAAG
TCGTACAATGCCAACGTCCCAGACGTGGTCTTACATGTAGTCACATATCGATGCCACTGTCCCAG
ACAGGGTCTTACTCTAAAACACATATCGAAATCACATATCGATGCCATGGTCTTACTCGCACACG
TATATCGGAATACTATATCATGACATATGTATCCTAACTATTCCTAATGTTCATATGGGGATTCC
GGACGTCGTAACTCGGTCGAAACGATTGCATGAACATAGTTAGCATGCTTACACATTCGACATTA
GCACATATTAATTCATATATT
Found at i:22160875 original size:49 final size:49
Alignment explanation
Indices: 22160802--22161058 Score: 257
Period size: 49 Copynumber: 5.4 Consensus size: 49
22160792 CTCAAACACG
*
22160802 AGACATGGTCTTACATTGGCTATCATCATCGAGGTCGATGCCATGTCCC
1 AGACATGGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
*
22160851 GGACATGGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
1 AGACATGGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
* * *
22160900 AGACATGGTCTTATACTGAC-A-CATC-TCGTA-GCCGATG-CATGTCCC
1 AGACATGGTCTTACATTGGCTATCATCATCG-AGGCCGATGCCATGTCCC
* * * * *
22160945 AAACAT-GTCTGACACTAGCTTAT-GTC-TCGAGGCCGAT-CCATGTCCC
1 AGACATGGTCTTACATTGGC-TATCATCATCGAGGCCGATGCCATGTCCC
* * * * ** *
22160991 AAACAT-GTCTTACACTAGCTCTCATC-TTAATGCCGATGCCATGTCCC
1 AGACATGGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
*
22161038 AGACATGGTCTTACACTGGCT
1 AGACATGGTCTTACATTGGCT
22161059 TACACCAATG
Statistics
Matches: 179, Mismatches: 20, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 58 0.32
47 19 0.11
48 14 0.08
49 63 0.35
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
AGACATGGTCTTACATTGGCTATCATCATCGAGGCCGATGCCATGTCCC
Found at i:22161017 original size:92 final size:94
Alignment explanation
Indices: 22160837--22161060 Score: 228
Period size: 94 Copynumber: 2.4 Consensus size: 94
22160827 TCATCGAGGT
** * * * *
22160837 CGATGCCATGTCCCGGACATGGTCTTACATTGGC-TATCATCATCGAGGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAAACATGGTCTGACACTAGCTTAT-GTC-TCGAGGCCGATGCCATGTCCCA
* *
22160901 GACATGGTCTTATACTGACACATCTCGT-A-GC
64 AACATGGTCTTACACTGACACATCT--TAATGC
22160932 CGATG-CATGTCCCAAACAT-GTCTGACACTAGCTTATGTCTCGAGGCCGAT-CCATGTCCCAAA
1 CGATGCCATGTCCCAAACATGGTCTGACACTAGCTTATGTCTCGAGGCCGATGCCATGTCCCAAA
* *
22160994 CAT-GTCTTACACTAGCTCTCATCTTAATGC
66 CATGGTCTTACACT-G-ACACATCTTAATGC
* * *
22161024 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA
1 CGATGCCATGTCCCAAACATGGTCTGACACTAGCTTA
22161061 CACCAATGAC
Statistics
Matches: 109, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
90 10 0.09
91 16 0.15
92 24 0.22
93 25 0.23
94 29 0.27
95 5 0.05
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (94 bp):
CGATGCCATGTCCCAAACATGGTCTGACACTAGCTTATGTCTCGAGGCCGATGCCATGTCCCAAA
CATGGTCTTACACTGACACATCTTAATGC
Found at i:22161026 original size:46 final size:45
Alignment explanation
Indices: 22160930--22161060 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 45
22160920 ACATCTCGTA
* * *
22160930 GCCGATGCATGTCCCAAACATGTCTGACACTAGCTTATGTCTCGAG
1 GCCGATCCATGTCCCAAACATGTCTTACACTAGCTTA-GTCTCAAG
* *
22160976 GCCGATCCATGTCCCAAACATGTCTTACACTAGCTCTCA-TCTTAAT
1 GCCGATCCATGTCCCAAACATGTCTTACACTAGCT-T-AGTCTCAAG
* *
22161022 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA
1 GCCGAT-CCATGTCCCAAACAT-GTCTTACACTAGCTTA
22161061 CACCAATGAC
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
46 44 0.59
47 16 0.22
48 14 0.19
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (45 bp):
GCCGATCCATGTCCCAAACATGTCTTACACTAGCTTAGTCTCAAG
Done.