Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 73 of 292
Found at i:22167598 original size:68 final size:70
Alignment explanation
Indices: 22167526--22167723 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
22167516 ACACCCTGTA
* * * *
22167526 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
22167588 ATAAAT
65 ATAAAT
*
22167594 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
22167659 ATAAAT
65 ATAAAT
*
22167665 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
22167724 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:22167637 original size:41 final size:41
Alignment explanation
Indices: 22167592--22167709 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
22167582 TGAAAGATAA
22167592 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
22167633 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
22167663 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
22167704 ATGTAG
1 ATGTAG
22167710 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:22167649 original size:71 final size:71
Alignment explanation
Indices: 22167560--22167723 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
22167550 GAGATGTATC
22167560 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
22167625 AGGACA
66 AGGACA
22167631 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
22167696 AGGACA
66 AGGACA
22167702 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
22167724 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:22171203 original size:46 final size:44
Alignment explanation
Indices: 22171101--22171266 Score: 174
Period size: 46 Copynumber: 3.6 Consensus size: 44
22171091 GTGCCGATTC
* * *
22171101 CATGTCCCAAACATGGTCTTATACTGGCATATCTCATAGTCAATG
1 CATGTCCCAAACATGGTCTTACACTGGCATATCTCA-AGCCGATG
* *
22171146 CATGTCCCAAACAT-GTCTTACACTGGCTTATGTCTCGAGGCCGATG
1 CATGTCCCAAACATGGTCTTACACTGGC--ATATCTC-AAGCCGATG
* *
22171192 CATGTCCCAAACAT-GTCTTACACTAGCACTCATCTCAATGCTGATG
1 CATGTCCCAAACATGGTCTTACACTGGCA-T-ATCTCAA-GCCGATG
*
22171238 CCATGTCCCAGACATGGTCTTACACTGGC
1 -CATGTCCCAAACATGGTCTTACACTGGC
22171267 TCACACCAAT
Statistics
Matches: 102, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
44 13 0.13
45 16 0.16
46 47 0.46
47 14 0.14
48 12 0.12
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (44 bp):
CATGTCCCAAACATGGTCTTACACTGGCATATCTCAAGCCGATG
Found at i:22173113 original size:22 final size:22
Alignment explanation
Indices: 22173080--22173122 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
22173070 GACTCACCAT
22173080 AGCTCATAAGAGCTTCTCGTTC
1 AGCTCATAAGAGCTTCTCGTTC
22173102 AGCTCA-ATAGAGCTTCTCGTT
1 AGCTCATA-AGAGCTTCTCGTT
22173123 TCCATCTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.33
Consensus pattern (22 bp):
AGCTCATAAGAGCTTCTCGTTC
Found at i:22177897 original size:30 final size:30
Alignment explanation
Indices: 22177863--22177919 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
22177853 AATCTGAAAC
*
22177863 AAAGAAGCCCA-GAATAAGGAAATCCAAGAT
1 AAAGAAACCCATG-ATAAGGAAATCCAAGAT
*
22177893 AAAGAAATCCATGATAAGGAAATCCAA
1 AAAGAAACCCATGATAAGGAAATCCAA
22177920 TTTACAGCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.54, C:0.16, G:0.18, T:0.12
Consensus pattern (30 bp):
AAAGAAACCCATGATAAGGAAATCCAAGAT
Found at i:22177899 original size:15 final size:15
Alignment explanation
Indices: 22177876--22177919 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
22177866 GAAGCCCAGA
22177876 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
22177891 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
22177906 ATAAGGAAATCCAA
1 ATAAGGAAATCCAA
22177920 TTTACAGCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.55, C:0.14, G:0.16, T:0.16
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:22191896 original size:22 final size:22
Alignment explanation
Indices: 22191770--22191884 Score: 194
Period size: 22 Copynumber: 5.2 Consensus size: 22
22191760 GTAGTGGAGT
* *
22191770 GGTGGTTGTATGGTGGTGGTTC
1 GGTGGATGTATGATGGTGGTTC
22191792 GGTGGATGTATGATGGTGGTTC
1 GGTGGATGTATGATGGTGGTTC
22191814 GGTGGATGTATGATGGTGGTTC
1 GGTGGATGTATGATGGTGGTTC
22191836 GGTGGATGTATGATGGTGGTTC
1 GGTGGATGTATGATGGTGGTTC
* *
22191858 AGTGGATGTATGATGGTCGTTC
1 GGTGGATGTATGATGGTGGTTC
22191880 GGTGG
1 GGTGG
22191885 TTGTTAGGTG
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 88 1.00
ACGTcount: A:0.12, C:0.05, G:0.46, T:0.37
Consensus pattern (22 bp):
GGTGGATGTATGATGGTGGTTC
Found at i:22192760 original size:18 final size:19
Alignment explanation
Indices: 22192739--22192774 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
22192729 AATAAAGAAA
*
22192739 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
22192757 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
22192775 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:22194169 original size:59 final size:58
Alignment explanation
Indices: 22194073--22194204 Score: 228
Period size: 59 Copynumber: 2.3 Consensus size: 58
22194063 AAAATTGTAC
*
22194073 AGCACTAAGTGTACGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
* *
22194131 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGGAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
22194190 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22194205 GATTCACTAT
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
58 22 0.31
59 48 0.69
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:22194193 original size:88 final size:89
Alignment explanation
Indices: 22194043--22194204 Score: 245
Period size: 88 Copynumber: 1.8 Consensus size: 89
22194033 GACAAGATTG
* * *
22194043 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTACGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTACGAACTGAAAATATATAGCACT
22194108 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * * * *
22194132 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGGAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTACGAACTGAAAATATATAGCACT
22194196 AAGTGTGCG
66 AAGTGTGCG
22194205 GATTCACTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
88 50 0.77
89 15 0.23
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTACGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:22194216 original size:29 final size:29
Alignment explanation
Indices: 22194073--22194204 Score: 228
Period size: 29 Copynumber: 4.5 Consensus size: 29
22194063 AAAATTGTAC
* *
22194073 AGCACTAAGTGTACGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22194102 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22194131 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
*
22194161 AGCACTAAGTGTGCGAGCTGGAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
22194190 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
22194205 GATTCACTAT
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
29 71 0.72
30 28 0.28
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:22198779 original size:47 final size:47
Alignment explanation
Indices: 22198728--22198821 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
22198718 ATGCGTTAGT
22198728 TAGTAAAATGTATGCTGTTTTTGTGTGGTATTAAGTGTATAATTGGC
1 TAGTAAAATGTATGCTGTTTTTGTGTGGTATTAAGTGTATAATTGGC
22198775 TAGTAAAATGTATGCTGTTTTTGTGTGGTATTAAGTGTATAATTGGC
1 TAGTAAAATGTATGCTGTTTTTGTGTGGTATTAAGTGTATAATTGGC
22198822 CTCAACATGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.26, C:0.04, G:0.26, T:0.45
Consensus pattern (47 bp):
TAGTAAAATGTATGCTGTTTTTGTGTGGTATTAAGTGTATAATTGGC
Found at i:22199521 original size:40 final size:40
Alignment explanation
Indices: 22199462--22199629 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
22199452 CATTCGAATG
* * *
22199462 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
22199502 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * **
22199542 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * * *
22199582 AAATCCGGGTTAAGACCCAAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
22199622 ATATCCGG
1 ATATCCGG
22199630 TTAAATCCCG
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 98 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:22201003 original size:17 final size:17
Alignment explanation
Indices: 22200981--22201027 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
22200971 AGTCCATTGA
*
22200981 TTATTTTTTATTTTTTT
1 TTATTTTTTATTTTTTC
*
22200998 TTA-TTTTCATTTTTTC
1 TTATTTTTTATTTTTTC
*
22201014 TT-TTATTTATTTTT
1 TTATTTTTTATTTTT
22201028 GAAGACTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 22 0.88
17 3 0.12
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.83
Consensus pattern (17 bp):
TTATTTTTTATTTTTTC
Found at i:22201017 original size:22 final size:23
Alignment explanation
Indices: 22200983--22201026 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
22200973 TCCATTGATT
* *
22200983 ATTTTTTATTTTTTTTTATTTTC
1 ATTTTTTACTTTTATTTATTTTC
22201006 ATTTTTT-CTTTTATTTATTTT
1 ATTTTTTACTTTTATTTATTTT
22201027 TGAAGACTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.82
Consensus pattern (23 bp):
ATTTTTTACTTTTATTTATTTTC
Found at i:22201027 original size:23 final size:23
Alignment explanation
Indices: 22200983--22201027 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
22200973 TCCATTGATT
*
22200983 ATTTTTTATTTTTTTTTATTTTC
1 ATTTTTTATTTTTTTATATTTTC
*
22201006 ATTTTTTCTTTTATTTAT-TTTT
1 ATTTTTTATTTT-TTTATATTTT
22201028 GAAGACTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.13, C:0.04, G:0.00, T:0.82
Consensus pattern (23 bp):
ATTTTTTATTTTTTTATATTTTC
Found at i:22221622 original size:40 final size:40
Alignment explanation
Indices: 22221547--22221768 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
22221537 AACCCAAGTA
* * **
22221547 CCTTCGGGATTTAG-CCGGATACAG-CAACTCCCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
22221586 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
22221626 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
22221666 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
22221706 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
22221746 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
22221769 CATTCGATTA
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.07
40 156 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:22231837 original size:40 final size:40
Alignment explanation
Indices: 22231758--22231876 Score: 195
Period size: 40 Copynumber: 3.0 Consensus size: 40
22231748 GTTTGACAAT
*
22231758 GATTCGAGATAGCTTTGGCTATAT-TGGCACTTAGTGTGC
1 GATTCGAGATAGCTTCGGCTATATATGGCACTTAGTGTGC
22231797 GATTCGAGATAGCTTCGGCTATATATGGCACTTAGTGTGC
1 GATTCGAGATAGCTTCGGCTATATATGGCACTTAGTGTGC
* * *
22231837 GACTCGAAATATCTTCGGCTATATATGGCACTTAGTGTGC
1 GATTCGAGATAGCTTCGGCTATATATGGCACTTAGTGTGC
22231877 AAGACTGAGG
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 23 0.31
40 52 0.69
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (40 bp):
GATTCGAGATAGCTTCGGCTATATATGGCACTTAGTGTGC
Found at i:22236758 original size:40 final size:39
Alignment explanation
Indices: 22236672--22236855 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
22236662 AAATTGAATG
* * * * *
22236672 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
22236712 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
* *
22236752 ATATCCGGGCCAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
22236792 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
22236831 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
22236856 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 108 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:22244866 original size:40 final size:39
Alignment explanation
Indices: 22244780--22244963 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 39
22244770 AAATTGAATG
* * * * *
22244780 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* * *
22244820 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
* *
22244860 ATATCCGGGCCAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
22244900 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
22244939 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
22244964 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 108 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:22248110 original size:49 final size:49
Alignment explanation
Indices: 22248053--22248275 Score: 254
Period size: 49 Copynumber: 4.5 Consensus size: 49
22248043 CTGGTACGCA
* *
22248053 TAGTAGCCTGCACTTAGTACTACACATGCGATCAATTATCCGGTAAACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * ** *
22248102 TAGTAGCCTGCACTTAGTACTA-ATACGTGACCTAACCATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
* * * * *
22248151 TAGTAGCCTACACTTAGTACTAGCACATGATTGA--AGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTA-CACATG--CGACCAATTATCCGGTACACG
*
22248201 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
*
22248250 TACTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
22248276 CGTGACCTCA
Statistics
Matches: 143, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
47 2 0.01
48 6 0.04
49 98 0.69
50 31 0.22
51 3 0.02
53 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:22248242 original size:99 final size:97
Alignment explanation
Indices: 22248053--22248275 Score: 270
Period size: 99 Copynumber: 2.3 Consensus size: 97
22248043 CTGGTACGCA
*
22248053 TAGTAGCCTGCACTTAGTACTACACATGCGATCAATTATCCGGTAAACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACAT-CGATCAATTATCCGGTAAACATAGTAGCCTGCACTTA
* *
22248118 GTACTAATACGTGACCTAACCATCCGATACACG
65 GTACTAACACGCGACCTAACCATCCGATACACG
* * * *
22248151 TAGTAGCCTACACTTAGTACTAGCACAT-GATTGAAGTTATCGGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTA-CACATCGA-TCAA-TTATCCGGTAAACATAGTAGCCTGCACT
* ** * *
22248215 TAGTACTACACATGCGACC-AATTATCCGGTACATG
63 TAGTACTA-ACACGCGACCTAACCATCCGATACACG
*
22248250 TACTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
22248276 CGTGACCTCA
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
97 2 0.02
98 28 0.26
99 70 0.65
100 7 0.07
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (97 bp):
TAGTAGCCTGCACTTAGTACTACACATCGATCAATTATCCGGTAAACATAGTAGCCTGCACTTAG
TACTAACACGCGACCTAACCATCCGATACACG
Found at i:22251866 original size:40 final size:40
Alignment explanation
Indices: 22251829--22252014 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
22251819 GCTACTCGTT
* *
22251829 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
22251869 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
22251909 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
22251949 CAAATGCCTTC-GGATCTTAGTCCGGATATAATCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
22251990 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
22252015 CATCATTCAA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:22251906 original size:80 final size:79
Alignment explanation
Indices: 22251806--22252014 Score: 230
Period size: 80 Copynumber: 2.6 Consensus size: 79
22251796 CCTTCGGAGT
** *
22251806 TTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 TTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCAC
22251870 AAATGCCTTCGGGAC
65 AAATGCCTTCGGGAC
* *
22251885 TTAACCCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 TTAA-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
22251949 CAAATGCCTTC-GGATC
64 CAAATGCCTTCGGGA-C
* * * * *
22251965 TTAGTCCGGATATA-ATCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TTA-ACCGGATATAGCT-AC-TCGCACAAATGCCTTCGGGACATAACCCGGA
22252015 CATCATTCAA
Statistics
Matches: 113, Mismatches: 10, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
79 8 0.07
80 95 0.84
81 10 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
TTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACA
AATGCCTTCGGGAC
Found at i:22254412 original size:2 final size:2
Alignment explanation
Indices: 22254405--22254429 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22254395 ACGTGCATGC
22254405 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
22254430 AGCTTACAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22262356 original size:163 final size:163
Alignment explanation
Indices: 22262071--22262394 Score: 495
Period size: 163 Copynumber: 2.0 Consensus size: 163
22262061 AAGCCTAAAG
* * *
22262071 TATTTGATGTCACAGAAAGAACTGAATTTGAGACAATGTAGATGGTTCGAGCTATTAAAAGATTA
1 TATTTAATGTCACAAAAAGAACTGAATTTGAGACAACGTAGATGGTTCGAGCTATTAAAAGATTA
*
22262136 CAATTTGATCATCAATTATCATCTAAGAAAAGCTAATGTTACTACTGATGCTTTAAGTAGAAAAT
66 CAATTTGATCATCAATTATCAACTAAGAAAAGCTAATGTTACTACTGATGCTTTAAGTAGAAAAT
* *
22262201 CTTTGTTTACCTTGAGAGCTTTGTATACTCGAT
131 ATTTGTTTACCTTAAGAGCTTTGTATACTCGAT
* *
22262234 TATTTAATGTCCCAAAAAGAACTGAATTTGAGACAACGTAGATGGTTCGAGCTGTTAAAAGATTA
1 TATTTAATGTCACAAAAAGAACTGAATTTGAGACAACGTAGATGGTTCGAGCTATTAAAAGATTA
** * * * ** *
22262299 TGATTTGATCATCGATTATCAACTAGGAAAAGCTAATTTTGTTGCTGATGCTTTAAGTAGAAAAT
66 CAATTTGATCATCAATTATCAACTAAGAAAAGCTAATGTTACTACTGATGCTTTAAGTAGAAAAT
*
22262364 ATTTGTTTCCCTTAAGAGCTTTGTATACTCG
131 ATTTGTTTACCTTAAGAGCTTTGTATACTCG
22262395 GTTGACATTG
Statistics
Matches: 144, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
163 144 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (163 bp):
TATTTAATGTCACAAAAAGAACTGAATTTGAGACAACGTAGATGGTTCGAGCTATTAAAAGATTA
CAATTTGATCATCAATTATCAACTAAGAAAAGCTAATGTTACTACTGATGCTTTAAGTAGAAAAT
ATTTGTTTACCTTAAGAGCTTTGTATACTCGAT
Found at i:22262693 original size:21 final size:21
Alignment explanation
Indices: 22262667--22262715 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
22262657 GTGGTCCAAG
22262667 GGACACGCCCGTGTGACCCTT
1 GGACACGCCCGTGTGACCCTT
*
22262688 GGACACGCCCGTGTGCCCCTT
1 GGACACGCCCGTGTGACCCTT
*
22262709 AGACACG
1 GGACACG
22262716 TCTGTGTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.16, C:0.39, G:0.29, T:0.16
Consensus pattern (21 bp):
GGACACGCCCGTGTGACCCTT
Found at i:22264523 original size:19 final size:20
Alignment explanation
Indices: 22264499--22264537 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
22264489 CAAGCCTAAC
*
22264499 CAAATTTTAGAA-TTTTTAT
1 CAAATTTTACAACTTTTTAT
22264518 CAAATTTTACAACTTTTTAT
1 CAAATTTTACAACTTTTTAT
22264538 TTTAGTCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (20 bp):
CAAATTTTACAACTTTTTAT
Found at i:22269238 original size:27 final size:27
Alignment explanation
Indices: 22269218--22269347 Score: 188
Period size: 27 Copynumber: 4.8 Consensus size: 27
22269208 ATTACCAAAG
* *
22269218 TACCCCCGATTTACAGAATTACCATTC
1 TACCCTCGATTTACAGAATTACCATTT
*
22269245 TACCCTCGATTTAAAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
22269272 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
** *
22269299 TACCCTCGATTTATTGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
22269326 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
22269348 TAAAATACCC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:22269356 original size:27 final size:27
Alignment explanation
Indices: 22269245--22269717 Score: 142
Period size: 27 Copynumber: 17.4 Consensus size: 27
22269235 ATTACCATTC
* ***
22269245 TACCCTCGATTTA-AAGAATTACCATTT
1 TACCCTCGATTTATAA-AATTACTAAAA
* * ***
22269272 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAA
** *****
22269299 TACCCTCGATTTATTGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
*
22269326 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
22269353 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAA
* * *
22269380 TACCCCCTGATTTGTAAAATTACTGAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* *
22269408 TACCCTCGACTTGTA-AAAATTACCAAAG
1 TACCCTCGA-TT-TATAAAATTACTAAAA
* ***
22269436 TACCCACGATTTATAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * **
22269463 TACCCTTGATTTACAAAATTATCGT--TT
1 TACCCTCGATTTATAAAATTA-C-TAAAA
* * *
22269490 TACCCTCGA-TTGTGAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *** ** *
22269516 TACCC-CTATAGGGTGGAATTACCAAAA
1 TACCCTCGAT-TTATAAAATTACTAAAA
* * *
22269543 TACCCTAG-TTTTTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * **
22269569 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACTAAAA
* ** * *
22269596 TACTCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
22269623 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTATAAAATTACTA-AAA
* * *
22269650 TACCCTTGACTTTCTAAAAGTTA-TGGAAA
1 TACCCTCGA-TTTATAAAA-TTACT-AAAA
* * * * *
22269679 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
*
22269706 TACCCTTGATTT
1 TACCCTCGATTT
22269718 GTAGGTTTAC
Statistics
Matches: 348, Mismatches: 73, Indels: 50
0.74 0.15 0.11
Matches are distributed among these distances:
24 1 0.00
25 3 0.01
26 37 0.11
27 231 0.66
28 60 0.17
29 16 0.05
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:22269395 original size:28 final size:27
Alignment explanation
Indices: 22269326--22269459 Score: 135
Period size: 28 Copynumber: 4.9 Consensus size: 27
22269316 ATTACCGTTT
* **
22269326 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCCCGATTTGTAAAATTACTAAAA
*
22269353 TA-CCCCTAGTTTGTAAAATTACTAAAA
1 TACCCCCGA-TTTGTAAAATTACTAAAA
*
22269380 TACCCCCTGATTTGTAAAATTACTGAAA
1 TACCCCC-GATTTGTAAAATTACTAAAA
* * * *
22269408 TACCCTCGACTTGTAAAAATTACCAAAG
1 TACCCCCGATTTGT-AAAATTACTAAAA
* *
22269436 TACCCACGATTTATAAAATTACTA
1 TACCCCCGATTTGTAAAATTACTA
22269460 TTTTACCCTT
Statistics
Matches: 88, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.05
27 35 0.40
28 48 0.55
29 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (27 bp):
TACCCCCGATTTGTAAAATTACTAAAA
Found at i:22269409 original size:55 final size:55
Alignment explanation
Indices: 22269326--22269459 Score: 155
Period size: 55 Copynumber: 2.4 Consensus size: 55
22269316 ATTACCGTTT
* * * *
22269326 TACCCTCGATTTACAAAATTACTAAAATACCCCTAG-TTTGT-AAAATTACTAAAA
1 TACCCACGATTTATAAAATTACTAAAATA-CCCTAGACTTGTAAAAATTACCAAAA
* * * * *
22269380 TACCCCCTGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAAATTACCAAAG
1 TACCCAC-GATTTATAAAATTACTAAAATACCCTAGACTTGTAAAAATTACCAAAA
22269436 TACCCACGATTTATAAAATTACTA
1 TACCCACGATTTATAAAATTACTA
22269460 TTTTACCCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
54 11 0.17
55 38 0.58
56 17 0.26
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (55 bp):
TACCCACGATTTATAAAATTACTAAAATACCCTAGACTTGTAAAAATTACCAAAA
Found at i:22269801 original size:27 final size:27
Alignment explanation
Indices: 22269758--22269831 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
22269748 AAATGACTAA
*
22269758 AATACCCCTACTA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
22269785 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
22269812 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
22269832 TGATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:22270592 original size:16 final size:16
Alignment explanation
Indices: 22270571--22270601 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22270561 CAAATATGGG
*
22270571 CATGACATTTTGCATA
1 CATGACATGTTGCATA
22270587 CATGACATGTTGCAT
1 CATGACATGTTGCAT
22270602 TGGGTTGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:22270664 original size:26 final size:26
Alignment explanation
Indices: 22270635--22270808 Score: 273
Period size: 26 Copynumber: 6.8 Consensus size: 26
22270625 GAGGAAGTGC
* *
22270635 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
22270661 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
22270687 AAAAGGGCTTATG-CCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
22270712 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
22270738 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
22270764 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
22270789 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
22270809 ATTAAAGATG
Statistics
Matches: 138, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
25 56 0.41
26 82 0.59
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:22270718 original size:51 final size:52
Alignment explanation
Indices: 22270635--22270808 Score: 309
Period size: 51 Copynumber: 3.4 Consensus size: 52
22270625 GAGGAAGTGC
*
22270635 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
22270687 AAAAGGGCTTATG-CCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
22270738 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
22270789 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
22270809 ATTAAAGATG
Statistics
Matches: 118, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
50 10 0.08
51 73 0.62
52 35 0.30
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:22270767 original size:77 final size:77
Alignment explanation
Indices: 22270635--22270808 Score: 271
Period size: 77 Copynumber: 2.3 Consensus size: 77
22270625 GAGGAAGTGC
* *
22270635 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTT-TG
**
22270700 -CCCAGTTTATTG
65 CCCCAGTTTACCG
**
22270712 AAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGC
1 AAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGC
22270777 CCCAGTTTACCG
66 CCCAGTTTACCG
22270789 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
22270809 ATTAAAGATG
Statistics
Matches: 90, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
76 12 0.13
77 78 0.87
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (77 bp):
AAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGC
CCCAGTTTACCG
Found at i:22271012 original size:42 final size:42
Alignment explanation
Indices: 22270961--22271041 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
22270951 CCAAATGGGT
* ** *
22270961 TTGCATACATTCATTGGTATTTCATGTGATATTGAAATGAGC
1 TTGCATACATCCATTGACATTACATGTGATATTGAAATGAGC
22271003 TTGCATACATCCATTGACATTACATGTGATATTGAAATG
1 TTGCATACATCCATTGACATTACATGTGATATTGAAATG
22271042 GGCCTAAGGC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (42 bp):
TTGCATACATCCATTGACATTACATGTGATATTGAAATGAGC
Found at i:22271145 original size:31 final size:31
Alignment explanation
Indices: 22271068--22271146 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
22271058 CGTTTACAGT
*
22271068 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
22271099 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
22271130 AAAGGCTTTAGCCCAGT
1 AAAGGCTTCAGCCCAGT
22271147 AACCATTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:22285976 original size:46 final size:46
Alignment explanation
Indices: 22285922--22286097 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
22285912 TGTTTGGGCA
22285922 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22285968 TCCAAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* * *
22286013 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
22286061 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTCATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22286098 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
45 1 0.01
46 61 0.57
47 25 0.23
48 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22286077 original size:93 final size:93
Alignment explanation
Indices: 22285918--22286088 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
22285908 AGGATGTTTG
* * *
22285918 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
22285983 TTGAGTCCGAGTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTTGAGAGATGTAACTA
* * * *
22286011 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
*
22286076 TTGAGTCTGAGTT
66 TTGAGTCCGAGTT
22286089 CACTCATGGG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
TTGAGTCCGAGTTTGAGAGATGTAACTA
Found at i:22289614 original size:48 final size:48
Alignment explanation
Indices: 22289543--22289724 Score: 274
Period size: 48 Copynumber: 3.8 Consensus size: 48
22289533 TCATATCGAA
* * * ** *
22289543 GCCATGTCCTAGACATGGTCTTACACGAAATCACATATCGATGCCAAT
1 GCCATGTCCCAAACATGGTCTTACATGGGATCTCATATCGATGCCAAT
* * *
22289591 GCCATATCCCAGACATGGCCTTACATGGGATCTCATATCGATGCCAAT
1 GCCATGTCCCAAACATGGTCTTACATGGGATCTCATATCGATGCCAAT
22289639 GCCATGTCCCAAACATGGTCTTACATGGGATCTCATATCGATGCCAAT
1 GCCATGTCCCAAACATGGTCTTACATGGGATCTCATATCGATGCCAAT
*
22289687 GTCATGTCCCAAACATGGTCTTACATGGGATCTCATAT
1 GCCATGTCCCAAACATGGTCTTACATGGGATCTCATAT
22289725 AACCCTAATG
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 123 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCATGTCCCAAACATGGTCTTACATGGGATCTCATATCGATGCCAAT
Found at i:22289684 original size:42 final size:42
Alignment explanation
Indices: 22289470--22289724 Score: 156
Period size: 48 Copynumber: 5.6 Consensus size: 42
22289460 TATCCCGGAT
* *
22289470 ATGGTCTTACATGGGATCACACATATCGATGCCGATAG-CCC-AGC
1 ATGGTCTTACATGGGAT--CTCATATCGATGCC-AT-GTCCCAAAC
* * * * *
22289514 TATGGTCTTACACGATG-TCTCATATCGAAGCCATGTCCTAGAC
1 -ATGGTCTTACATG-GGATCTCATATCGATGCCATGTCCCAAAC
* ** * *
22289557 ATGGTCTTACACGAAATCACATATCGATGCCAATGCCATATCCCAGAC
1 ATGGTCTTACATGGGATCTCATATCGATGCC-ATG-----TCCCAAAC
*
22289605 ATGGCCTTACATGGGATCTCATATCGATGCCAATGCCATGTCCCAAAC
1 ATGGTCTTACATGGGATCTCATATC---G---ATGCCATGTCCCAAAC
22289653 ATGGTCTTACATGGGATCTCATATCGATGCCAATGTCATGTCCCAAAC
1 ATGGTCTTACATGGGATCTCATATCGATG-C-----CATGTCCCAAAC
22289701 ATGGTCTTACATGGGATCTCATAT
1 ATGGTCTTACATGGGATCTCATAT
22289725 AACCCTAATG
Statistics
Matches: 169, Mismatches: 19, Indels: 41
0.74 0.08 0.18
Matches are distributed among these distances:
41 1 0.01
42 33 0.20
43 17 0.10
45 14 0.08
46 1 0.01
48 94 0.56
51 1 0.01
53 3 0.02
54 5 0.03
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGGTCTTACATGGGATCTCATATCGATGCCATGTCCCAAAC
Found at i:22290324 original size:20 final size:23
Alignment explanation
Indices: 22290291--22290331 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
22290281 TAGTAAAACT
22290291 CATTTCTCTAACCA-TAAACATG
1 CATTTCTCTAACCATTAAACATG
22290313 CATTT-TCT-ACCATTAAACA
1 CATTTCTCTAACCATTAAACA
22290332 CAAAAATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (23 bp):
CATTTCTCTAACCATTAAACATG
Found at i:22300237 original size:57 final size:57
Alignment explanation
Indices: 22300174--22300289 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 57
22300164 AATTTCACAT
* *
22300174 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTAATATGGCCCATTAGACCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTAATATGGCCCATTAGACCC-AATC
* * * *
22300231 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTAATATGGCCCATTAGACCCAATC
22300288 AC
1 AC
22300290 ATTCATAATC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 28 0.54
58 24 0.46
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (57 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTAATATGGCCCATTAGACCCAATC
Found at i:22300240 original size:29 final size:28
Alignment explanation
Indices: 22300177--22300291 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 28
22300167 TTCACATACC
* *
22300177 TGTATCTGGCCCATTA-AGCCCAATCATA
1 TGTATATGGCCCATTAGA-CCCAATCACA
*
22300205 T-TAATATGGCCCATTAGACCCAAATCACC
1 TGT-ATATGGCCCATTAGACCC-AATCACA
*
22300234 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGACCC-AATCACA
* * *
22300263 TTTATATGGCCCGTTAGGCCCAATCACA
1 TGTATATGGCCCATTAGACCCAATCACA
22300291 T
1 T
22300292 TCATAATCAT
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
27 1 0.01
28 24 0.32
29 50 0.66
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (28 bp):
TGTATATGGCCCATTAGACCCAATCACA
Found at i:22300646 original size:34 final size:34
Alignment explanation
Indices: 22300598--22300668 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
22300588 TGCGATCTCC
22300598 TTAGCCCAAACCTACAATCGATATCACTCAAAGA
1 TTAGCCCAAACCTACAATCGATATCACTCAAAGA
*
22300632 TTAGCCCAAGCCTACAATCGATATCACTCAAAGA
1 TTAGCCCAAACCTACAATCGATATCACTCAAAGA
22300666 TTA
1 TTA
22300669 ATCTTACATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.39, C:0.28, G:0.10, T:0.23
Consensus pattern (34 bp):
TTAGCCCAAACCTACAATCGATATCACTCAAAGA
Found at i:22305014 original size:40 final size:40
Alignment explanation
Indices: 22304959--22305123 Score: 172
Period size: 40 Copynumber: 4.1 Consensus size: 40
22304949 TGAATGATAC
* * *
22304959 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
22304999 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
22305039 CCGGGCTAAAGACCCGAAGGCAATTGTGCAAGTCACCAAAT
1 CCGGGCT-AAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * * *
22305080 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATGT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
22305120 CCGG
1 CCGG
22305124 TTGAATCCCG
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
39 2 0.02
40 67 0.66
41 30 0.29
42 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:22309820 original size:40 final size:40
Alignment explanation
Indices: 22309747--22310138 Score: 599
Period size: 40 Copynumber: 9.8 Consensus size: 40
22309737 GAGCGATGAT
* * *
22309747 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * * *
22309787 TGCTCTTCGGGACTTAGTCCGGTTGCCTTACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
22309827 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCTA-AAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGC-ACGAA
*
22309867 TGCTCTTTGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
22309907 TGCTCTTCGGAACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
22309947 TGCTCTTCGGAACTTAATCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
22309987 TGCTCTTCGGAACTTAATCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
22310027 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
22310067 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
22310107 TGCTCTTCGGGATTTAG-CCTGGATATATCACT
1 TGCTCTTCGGAACTTAGTCC-GGATACATCACT
22310139 CTCAATTCTT
Statistics
Matches: 325, Mismatches: 24, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
39 3 0.01
40 321 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:22312085 original size:37 final size:37
Alignment explanation
Indices: 22312035--22312120 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
22312025 TTATTACGAA
22312035 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
22312072 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
22312109 GTCTCACCCGGA
1 GTCTTACCCGGA
22312121 ATATATTTCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:22312252 original size:48 final size:48
Alignment explanation
Indices: 22312169--22312436 Score: 428
Period size: 48 Copynumber: 5.6 Consensus size: 48
22312159 ACAACATTCT
* * * * *
22312169 CATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
* * * * * *
22312217 CATTCGCCATTCGGCTTTACGACATATACACATCTCATATATATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
22312265 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
*
22312313 CATTATCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
22312361 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
1 CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
22312409 CATTAGCCATTCGGCTTTACCACATATA
1 CATTAGCCATTCGGCTTTACCACATATA
22312437 TACACTTTCA
Statistics
Matches: 205, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 205 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
CATTAGCCATTCGGCTTTACCACATATACATATCACACATGTATTTCA
Found at i:22312480 original size:47 final size:47
Alignment explanation
Indices: 22312414--22312536 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
22312404 TTTCACATTA
* * *
22312414 GCCATTCGGCTTTACCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
22312461 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
22312508 GCCATTAGGCCTTATCACATATATACACT
1 GCCATTAGGCCTTATCACATATATACACT
22312537 ACGAGCTGTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
Found at i:22312496 original size:144 final size:143
Alignment explanation
Indices: 22312164--22312483 Score: 356
Period size: 144 Copynumber: 2.2 Consensus size: 143
22312154 AGGTTACAAC
* * * * * * * * * * *
22312164 ATTCTCATTAGCCATTCGGCTTTACCACATATTCATATCTCATACGCATTTCACATTCGCCATTC
1 ATTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATTC
* * *
22312229 GGCTTTACGACATATACACATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
66 GGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
*
22312294 ATATCACACATGT
131 ACATCACACATGT
* * * * *
22312307 ATTTCACATTATCCATTCGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATT
1 A-TTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATT
* *
22312372 CGGCTTTACCACATATACATATCACACATGTATTTCACATTAGCCATTCGGCTTTACCACATATA
65 CGGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATA
* **
22312437 TACACTTTCACAT-T
130 CACA-TCACACATGT
* *
22312451 CA-TCACATCGGCCATTAGGCCTTATCACATATA
1 -ATTCACATCAGCCATTAGGCCTTACCACATATA
22312484 TACACTTTCA
Statistics
Matches: 151, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
143 26 0.17
144 118 0.78
145 7 0.05
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (143 bp):
ATTCACATCAGCCATTAGGCCTTACCACATATACACATCACACATGTATTTCACATTAGCCATTC
GGCTTTACCACATATACACATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ACATCACACATGT
Found at i:22321063 original size:40 final size:40
Alignment explanation
Indices: 22321018--22321147 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
22321008 CGGAATACAA
22321018 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
22321058 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
22321098 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
22321138 CCGGATATAA
1 CCGGATATAA
22321148 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:22324576 original size:39 final size:39
Alignment explanation
Indices: 22324522--22324674 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
22324512 TAATGTTAGA
*
22324522 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
22324561 GTGATATCTGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
22324600 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
22324639 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
22324675 GGTTACCATA
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:22324690 original size:40 final size:39
Alignment explanation
Indices: 22324523--22324704 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
22324513 AATGTTAGAG
* *
22324523 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
22324562 TGATATCTGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
22324601 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
22324640 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
22324680 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
22324705 TGTTTTGAAC
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 86 0.68
40 40 0.32
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:22331140 original size:42 final size:42
Alignment explanation
Indices: 22331094--22331246 Score: 128
Period size: 42 Copynumber: 3.5 Consensus size: 42
22331084 TGTCCTAAAC
*
22331094 ATGGTCTTACATGAGATCTTACATCGATGCCATATCCCAGAT
1 ATGGTCTTACATGAAATCTTACATCGATGCCATATCCCAGAT
* * * * * *
22331136 ATGGTCTTATACT-AAATCTCATATCAACGCCATATCCTAGAT
1 ATGGTCTTACA-TGAAATCTTACATCGATGCCATATCCCAGAT
* * *
22331178 ATAGTCTTACATGATAACTCATACTGATACTGATGCCATATCTCAGAT
1 ATGGTCTTACATGA-AA-TCTTAC--AT-C-GATGCCATATCCCAGAT
* *
22331226 ATGGTCTTATATGAGATCTTA
1 ATGGTCTTACATGAAATCTTA
22331247 TCAACCCAAA
Statistics
Matches: 83, Mismatches: 20, Indels: 12
0.72 0.17 0.10
Matches are distributed among these distances:
41 1 0.01
42 43 0.52
43 3 0.04
44 3 0.04
46 6 0.07
47 2 0.02
48 25 0.30
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (42 bp):
ATGGTCTTACATGAAATCTTACATCGATGCCATATCCCAGAT
Found at i:22341591 original size:40 final size:39
Alignment explanation
Indices: 22341547--22341727 Score: 220
Period size: 39 Copynumber: 4.6 Consensus size: 39
22341537 GTTCAAAACA
* * ** *
22341547 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAATTG
* *
22341587 CCTTCGGGACTTAACCCGGATATCACAA-CCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAATTG
* *
22341626 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACCCGCACAATTG
* **
22341665 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACCCGCACAATTG
*
22341704 CCTCCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
22341728 CTCGAACATT
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
38 16 0.13
39 87 0.70
40 22 0.18
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACCCGCACAATTG
Found at i:22341630 original size:39 final size:38
Alignment explanation
Indices: 22341576--22341728 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 38
22341566 TTATGGTAAC
* *
22341576 CCGCACAAATGCCTTCGGGACTTAACCCGGATATCACAA
1 CCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
* *
22341615 CCGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAG
1 CCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
22341653 CTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 C-CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
* *
22341692 TTCGCACAATTGCCTCCGGGCTTAGCCCGGATATCAC
1 -CCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
22341729 TCGAACATTC
Statistics
Matches: 104, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 17 0.16
39 87 0.84
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (38 bp):
CCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
Found at i:22341643 original size:78 final size:78
Alignment explanation
Indices: 22341547--22341727 Score: 247
Period size: 78 Copynumber: 2.3 Consensus size: 78
22341537 GTTCAAAACA
* * **
22341547 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
1 CCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGG-CTTAACCCGGATATCA
22341612 CAA-CCGCACAATTG
64 CAATCCGCACAATTG
* * * *
22341626 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATCACA
*
22341691 ATTCGCACAATTG
66 ATCCGCACAATTG
*
22341704 CCTCCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
22341728 CTCGAACATT
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
77 18 0.20
78 65 0.71
79 8 0.09
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (78 bp):
CCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATCACA
ATCCGCACAATTG
Found at i:22353713 original size:40 final size:39
Alignment explanation
Indices: 22353669--22353850 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
22353659 GTTCAAAACA
* * ** * *
22353669 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
22353709 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
22353749 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
22353788 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
22353827 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
22353851 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:22353780 original size:39 final size:39
Alignment explanation
Indices: 22353699--22353851 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
22353689 TATGGTAACC
* *
22353699 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
22353739 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
22353778 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
22353817 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
22353852 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:22357637 original size:21 final size:21
Alignment explanation
Indices: 22357611--22357657 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
22357601 GTCCATCTCG
22357611 TAATTAAGCACTAAATCGATA
1 TAATTAAGCACTAAATCGATA
22357632 TAATTAAGCACTAAATCGATA
1 TAATTAAGCACTAAATCGATA
*
22357653 AAATT
1 TAATT
22357658 TGATTATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.30
Consensus pattern (21 bp):
TAATTAAGCACTAAATCGATA
Found at i:22375503 original size:8 final size:8
Alignment explanation
Indices: 22375490--22375518 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
22375480 AACAATGTTG
22375490 TTTTTTAT
1 TTTTTTAT
22375498 TTTTTTAT
1 TTTTTTAT
22375506 TTTTTTAT
1 TTTTTTAT
22375514 TTTTT
1 TTTTT
22375519 GCAGATCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTAT
Found at i:22378088 original size:12 final size:12
Alignment explanation
Indices: 22378071--22378098 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
22378061 ATTATTCTTT
22378071 AGAGTAAAAGGG
1 AGAGTAAAAGGG
22378083 AGAGTAAAAGGG
1 AGAGTAAAAGGG
22378095 AGAG
1 AGAG
22378099 ATGTATATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.43, T:0.07
Consensus pattern (12 bp):
AGAGTAAAAGGG
Found at i:22381405 original size:28 final size:30
Alignment explanation
Indices: 22381374--22381429 Score: 82
Period size: 28 Copynumber: 1.9 Consensus size: 30
22381364 AAAATTTTAA
22381374 AAAAAAGTAT-TTAAAAA-T-AAAAAAATTC
1 AAAAAAGT-TCTTAAAAATTCAAAAAAATTC
22381402 AAAAAAGTTCTTAAAAATTCAAAAAAAT
1 AAAAAAGTTCTTAAAAATTCAAAAAAAT
22381430 AACATGAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 1 0.04
28 15 0.60
29 1 0.04
30 8 0.32
ACGTcount: A:0.66, C:0.05, G:0.04, T:0.25
Consensus pattern (30 bp):
AAAAAAGTTCTTAAAAATTCAAAAAAATTC
Found at i:22383715 original size:31 final size:31
Alignment explanation
Indices: 22383671--22383739 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
22383661 TACAAAATGG
* *
22383671 TCACTAAATTATTC-AAAAGTTTTCATTTAAA
1 TCACTAAACTATTCAAAAAATTTT-ATTTAAA
*
22383702 TCGCTAAACTATTCAAAAAATTTTATTTAAA
1 TCACTAAACTATTCAAAAAATTTTATTTAAA
22383733 TCACTAA
1 TCACTAA
22383740 GTTGTTAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 25 0.76
32 8 0.24
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.39
Consensus pattern (31 bp):
TCACTAAACTATTCAAAAAATTTTATTTAAA
Found at i:22388499 original size:2 final size:2
Alignment explanation
Indices: 22388492--22388520 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22388482 GATGAGAAAG
22388492 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22388521 GAACACTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22391440 original size:47 final size:47
Alignment explanation
Indices: 22391370--22391711 Score: 576
Period size: 47 Copynumber: 7.3 Consensus size: 47
22391360 CCCTTCGGGA
* * * * *
22391370 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
22391417 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
*
22391464 CGTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
22391511 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
*
22391558 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
* *
22391605 CTTATCACATATATGCATATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
*
22391652 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
* *
22391699 TTTACCACATATA
1 CTTATCACATATA
22391712 CATATCTTAT
Statistics
Matches: 279, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 279 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
Found at i:22402970 original size:40 final size:40
Alignment explanation
Indices: 22402915--22403118 Score: 304
Period size: 40 Copynumber: 5.1 Consensus size: 40
22402905 CGGATGACAA
* * *
22402915 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
22402955 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22402995 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22403035 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
22403075 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
22403115 CCGG
1 CCGG
22403119 TTAAATCGCG
Statistics
Matches: 152, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 3 0.02
40 149 0.98
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:22404730 original size:54 final size:54
Alignment explanation
Indices: 22404649--22404843 Score: 148
Period size: 54 Copynumber: 3.6 Consensus size: 54
22404639 AGGATACCAA
* * *
22404649 GTAAGACCATGCCAAGGCATGAG-ATTGATAAGTTCTACAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGACATG-GCAATGATAAGTTCTATAAGGCAAGGAAATCAT
* * * * *
22404703 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGAC-A--AAATCCCAT
1 GTAAGACCATGCCAAGACATGGCAATGAT-AAGTTCTATAAGGCAAGGAAAT--CAT
* * * * * * * *
22404757 GTAAGACCATGCCAAGGCATGACAATGGTGAGTTC-ATATGGCAAGGATACCAC
1 GTAAGACCATGCCAAGACATGGCAATGATAAGTTCTATAAGGCAAGGAAATCAT
* * *
22404810 GTAAGACCATGTCAAGAGATGGCAATGGTAAGTT
1 GTAAGACCATGCCAAGACATGGCAATGATAAGTT
22404844 TAAAAAGGAA
Statistics
Matches: 110, Mismatches: 24, Indels: 15
0.74 0.16 0.10
Matches are distributed among these distances:
52 9 0.08
53 36 0.33
54 53 0.48
55 12 0.11
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (54 bp):
GTAAGACCATGCCAAGACATGGCAATGATAAGTTCTATAAGGCAAGGAAATCAT
Found at i:22411029 original size:13 final size:13
Alignment explanation
Indices: 22411011--22411037 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22411001 TTGTTTAATC
22411011 AGTTAATTAGTTT
1 AGTTAATTAGTTT
22411024 AGTTAATTAGTTT
1 AGTTAATTAGTTT
22411037 A
1 A
22411038 ATAAACAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
AGTTAATTAGTTT
Found at i:22417805 original size:36 final size:36
Alignment explanation
Indices: 22417765--22417837 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
22417755 CATAACTGTA
22417765 ACCTAAACCTCGTTACAACCATGCAAAGACCTTTTG
1 ACCTAAACCTCGTTACAACCATGCAAAGACCTTTTG
22417801 ACCTAAACCTCGTTACAACCATGCAAAGACCTTTTG
1 ACCTAAACCTCGTTACAACCATGCAAAGACCTTTTG
22417837 A
1 A
22417838 TTAGTGTATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.30, G:0.11, T:0.25
Consensus pattern (36 bp):
ACCTAAACCTCGTTACAACCATGCAAAGACCTTTTG
Found at i:22419449 original size:13 final size:13
Alignment explanation
Indices: 22419431--22419457 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22419421 TAGTTTAATC
22419431 AGTTAATTAGTTT
1 AGTTAATTAGTTT
22419444 AGTTAATTAGTTT
1 AGTTAATTAGTTT
22419457 A
1 A
22419458 ATAAACAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
AGTTAATTAGTTT
Found at i:22420566 original size:42 final size:44
Alignment explanation
Indices: 22420464--22420635 Score: 142
Period size: 43 Copynumber: 4.0 Consensus size: 44
22420454 GCTTCATACA
* * *
22420464 ATGCCAACGTCCCAG--ATGTGTTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATG-GTTCTTACACGAAATCAAATATCG
* *
22420507 ATGCCATTGTCCCAGACA-GGTTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCCAGACATGGTTCTTACACGAAATCAAATATCG
* * * *
22420549 ATGCCAATGTCCTAGACATGG-TCTTAGACGAAAATCTCAA-ACCG
1 ATGCCAATGTCCCAGACATGGTTCTTACACG-AAATC-AAATATCG
* * ** *
22420593 ATGCCTACGTCCCAGATGTGG-TCTTACACGAAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTTCTTACACGAAATCAAATATCG
22420636 GAATCCTATG
Statistics
Matches: 103, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
42 27 0.26
43 47 0.46
44 28 0.27
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTTCTTACACGAAATCAAATATCG
Found at i:22421432 original size:10 final size:10
Alignment explanation
Indices: 22421417--22421448 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
22421407 CCCTAGGAAC
22421417 TCTTTTTCTT
1 TCTTTTTCTT
22421427 TCTTTTTCTT
1 TCTTTTTCTT
22421437 TCTTTTTCTT
1 TCTTTTTCTT
22421447 TC
1 TC
22421449 AATTTTCTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (10 bp):
TCTTTTTCTT
Found at i:22425029 original size:16 final size:17
Alignment explanation
Indices: 22425004--22425036 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
22424994 AGTAAGTCAT
22425004 AATAAAATA-TCAACTC
1 AATAAAATATTCAACTC
*
22425020 AATAATATATTCAACTC
1 AATAAAATATTCAACTC
22425037 CTTAAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (17 bp):
AATAAAATATTCAACTC
Found at i:22425337 original size:50 final size:50
Alignment explanation
Indices: 22425278--22425397 Score: 213
Period size: 50 Copynumber: 2.4 Consensus size: 50
22425268 ATCACTCATC
**
22425278 TGGCCGAATATACAAGATTGAATATAACATCACATATGTACATACCTATA
1 TGGCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATA
22425328 TGGCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATA
1 TGGCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATA
*
22425378 TGGCCGAATATACAAAATCA
1 TGGCCGAATATACAAGATCA
22425398 TTTAGCTCAG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.26
Consensus pattern (50 bp):
TGGCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATA
Found at i:22440864 original size:50 final size:49
Alignment explanation
Indices: 22440805--22440962 Score: 221
Period size: 50 Copynumber: 3.4 Consensus size: 49
22440795 ATCACTCATC
22440805 TGGCCGAATATACAAGATCCAATATAACATCACATATGTACATACCTATA
1 TGGCCGAATATACAAGAT-CAATATAACATCACATATGTACATACCTATA
22440855 TGGCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATA
1 TGGCCGAATATACAAGATC-AATATAACATCACATATGTACATACCTATA
22440905 TGGCCG-A-AT---AG------ATAACATCACATATGTACATACCTATA
1 TGGCCGAATATACAAGATCAATATAACATCACATATGTACATACCTATA
22440943 TGGCCGAATATACAAGATCA
1 TGGCCGAATATACAAGATCA
22440963 TTTAGCTCAG
Statistics
Matches: 98, Mismatches: 0, Indels: 23
0.81 0.00 0.19
Matches are distributed among these distances:
38 33 0.34
39 1 0.01
40 2 0.02
43 2 0.02
45 2 0.02
48 2 0.02
49 2 0.02
50 54 0.55
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.25
Consensus pattern (49 bp):
TGGCCGAATATACAAGATCAATATAACATCACATATGTACATACCTATA
Found at i:22440920 original size:38 final size:38
Alignment explanation
Indices: 22440878--22440952 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
22440868 AAGATCAAAT
22440878 ATAACATCACATATGTACATACCTATATGGCCGAATAG
1 ATAACATCACATATGTACATACCTATATGGCCGAATAG
22440916 ATAACATCACATATGTACATACCTATATGGCCGAATA
1 ATAACATCACATATGTACATACCTATATGGCCGAATA
22440953 TACAAGATCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (38 bp):
ATAACATCACATATGTACATACCTATATGGCCGAATAG
Found at i:22445062 original size:239 final size:239
Alignment explanation
Indices: 22444643--22445116 Score: 930
Period size: 239 Copynumber: 2.0 Consensus size: 239
22444633 CTACCAACTC
22444643 ATGTCCATATTTGTCCATGCATTAGTACAATGGTCTAGTTGACATGCAAGGACCTTTATTTTAAA
1 ATGTCCATATTTGTCCATGCATTAGTACAATGGTCTAGTTGACATGCAAGGACCTTTATTTTAAA
22444708 AGCCAAGCCAAATAGGTGCTTTAGCATCTAGCACTCAACTTTTACACTTTACGCAATTTAATCCT
66 AGCCAAGCCAAATAGGTGCTTTAGCATCTAGCACTCAACTTTTACACTTTACGCAATTTAATCCT
22444773 TTTTCATAATTAAGCACAGAAACAGACAAATTAAATCACAGAAATTTTCACAGATGTAAATTCAA
131 TTTTCATAATTAAGCACAGAAACAGACAAATTAAATCACAGAAATTTTCACAGATGTAAATTCAA
22444838 ATATCACAGACACAGAAAATAATATTAAAATATTTTTTAGTACA
196 ATATCACAGACACAGAAAATAATATTAAAATATTTTTTAGTACA
22444882 ATGTCCATATTTGTCCATGCATTAGTACAATGGTCTAGTTGACATGCAAGGACCTTTATTTTAAA
1 ATGTCCATATTTGTCCATGCATTAGTACAATGGTCTAGTTGACATGCAAGGACCTTTATTTTAAA
*
22444947 AGCCAAGCCAAATAGGTGCTTTAGCATCTAGCACTCAACTTTTACACTTTACGCGATTTAATCCT
66 AGCCAAGCCAAATAGGTGCTTTAGCATCTAGCACTCAACTTTTACACTTTACGCAATTTAATCCT
*
22445012 TTTTCATAATTAAGCACAGAAACAGACAAATTAAATCATAGAAATTTTCACAGATGTAAATTCAA
131 TTTTCATAATTAAGCACAGAAACAGACAAATTAAATCACAGAAATTTTCACAGATGTAAATTCAA
22445077 ATATCACAGACACAGAAAATAATATTAAAATATTTTTTAG
196 ATATCACAGACACAGAAAATAATATTAAAATATTTTTTAG
22445117 ACTCAGATTT
Statistics
Matches: 233, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
239 233 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (239 bp):
ATGTCCATATTTGTCCATGCATTAGTACAATGGTCTAGTTGACATGCAAGGACCTTTATTTTAAA
AGCCAAGCCAAATAGGTGCTTTAGCATCTAGCACTCAACTTTTACACTTTACGCAATTTAATCCT
TTTTCATAATTAAGCACAGAAACAGACAAATTAAATCACAGAAATTTTCACAGATGTAAATTCAA
ATATCACAGACACAGAAAATAATATTAAAATATTTTTTAGTACA
Found at i:22447608 original size:42 final size:40
Alignment explanation
Indices: 22447499--22447618 Score: 114
Period size: 42 Copynumber: 2.9 Consensus size: 40
22447489 AAGCTCATAT
* * *
22447499 AATGCCAACGTCCCAGACGTGGTCTTACATGTAATTAAATATC
1 AATGCCAATGTCCCAGACATGGTCTTACATG-AA--AAATAGC
* * * * *
22447542 AATGCCACTATCCCAGTCAGGGTCTTACACGAAAACATACGC
1 AATGCCAATGTCCCAGACATGGTCTTACATGAAAA-ATA-GC
*
22447584 GATGCCAATGTCCCAGACATGGTCTTACATGAAAA
1 AATGCCAATGTCCCAGACATGGTCTTACATGAAAA
22447619 TCTCAAACCA
Statistics
Matches: 61, Mismatches: 14, Indels: 5
0.76 0.17 0.06
Matches are distributed among these distances:
40 2 0.03
41 3 0.05
42 32 0.52
43 24 0.39
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (40 bp):
AATGCCAATGTCCCAGACATGGTCTTACATGAAAAATAGC
Found at i:22450650 original size:47 final size:43
Alignment explanation
Indices: 22450568--22450700 Score: 122
Period size: 46 Copynumber: 2.9 Consensus size: 43
22450558 GTAACCCGCC
* * * *
22450568 CATAAGTGAACTCAGACTCAACTCAATGAGCTCGGATGCCTAGTTA
1 CATAACTGAACTCGGACTCAACTCAACGAGTTCGGATGCC--G-TA
** * *
22450614 CATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCGTC
1 CATAACT-GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CGTA
*
22450661 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CATAACTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
22450701 CAAATATCCT
Statistics
Matches: 71, Mismatches: 12, Indels: 11
0.76 0.13 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.04
46 32 0.45
47 30 0.42
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (43 bp):
CATAACTGAACTCGGACTCAACTCAACGAGTTCGGATGCCGTA
Found at i:22467737 original size:93 final size:93
Alignment explanation
Indices: 22467625--22467796 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
22467615 GCCCATAAGT
* *
22467625 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22467690 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
22467718 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22467783 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
22467797 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:22467792 original size:46 final size:46
Alignment explanation
Indices: 22467617--22467792 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
22467607 TGTAACCCGC
* * *
22467617 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
22467663 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
22467713 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
22467756 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22467793 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:22471553 original size:40 final size:40
Alignment explanation
Indices: 22471498--22471675 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 40
22471488 CGGATGATAA
* *
22471498 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22471538 CCGGGCTAAGTCCCGAAGGCATTTGTGCGACTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
22471578 CTGGGCTAGGTCCCGAAGACATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22471618 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
22471658 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
22471676 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 18 0.15
40 104 0.85
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:22479749 original size:40 final size:40
Alignment explanation
Indices: 22479694--22479911 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
22479684 CGGATGATAA
* *
22479694 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
22479734 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
22479774 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
22479814 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22479854 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
22479894 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
22479912 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 17 0.10
40 150 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:22483294 original size:40 final size:40
Alignment explanation
Indices: 22483167--22483296 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
22483157 ATGCTGGAAA
* *
22483167 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
22483207 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
22483247 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
22483287 TTATATCCGG
1 TTATATCCGG
22483297 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:22493379 original size:40 final size:40
Alignment explanation
Indices: 22493310--22493445 Score: 247
Period size: 40 Copynumber: 3.4 Consensus size: 40
22493300 AACCCAAGTA
* *
22493310 CCTTCGGGAATTAG-CCGGATATAGCAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
22493349 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
22493389 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
22493429 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
22493446 AGTTATCATC
Statistics
Matches: 94, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 13 0.14
40 81 0.86
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAATTG
Found at i:22494978 original size:13 final size:13
Alignment explanation
Indices: 22494960--22494985 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22494950 ATTTTTATTT
22494960 TTAACATAAAATA
1 TTAACATAAAATA
22494973 TTAACATAAAATA
1 TTAACATAAAATA
22494986 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:22501557 original size:40 final size:40
Alignment explanation
Indices: 22501485--22501582 Score: 162
Period size: 40 Copynumber: 2.5 Consensus size: 40
22501475 AACCCAAGTA
*
22501485 CCTTCGGGAATTAG-CCGGATATAGCAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATTG
* *
22501524 CCTTCGGGACTTAGCCCTGATATAGTAACTAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATTG
22501564 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22501583 TTATCATCCG
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
39 13 0.24
40 41 0.76
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATTG
Found at i:22503112 original size:13 final size:13
Alignment explanation
Indices: 22503094--22503119 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22503084 ATCCATATTT
22503094 TTAACATAAAATA
1 TTAACATAAAATA
22503107 TTAACATAAAATA
1 TTAACATAAAATA
22503120 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:22505281 original size:46 final size:47
Alignment explanation
Indices: 22505231--22505367 Score: 138
Period size: 47 Copynumber: 2.9 Consensus size: 47
22505221 CACTGACACA
**
22505231 TCTCGTAGTTGATGCATGTCCCAGACATGTCTTACACTAGCT-T-AT
1 TCTCGTAGCAGATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT
* *
22505276 GTCTCG-AGGCAGATTCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 -TCTCGTA-GCAGA-TGCATGTCCCAGACAT-GTCTTACACTAGCTCTCAT
** * *
22505326 AAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 TCTCGTAGCAGATGCATGTCCCAGACATGTCTTACACTAGCTC
22505368 ACACAAGTGA
Statistics
Matches: 75, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
45 1 0.01
46 22 0.29
47 30 0.40
48 18 0.24
49 2 0.03
50 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (47 bp):
TCTCGTAGCAGATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT
Found at i:22505301 original size:47 final size:46
Alignment explanation
Indices: 22505245--22505367 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 46
22505235 GTAGTTGATG
**
22505245 CATGTCCCAGACATGTCTTACACTAGCT-T-ATGTCTCGAGGCAGATTC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCAT-AAT-GAGGCAGA-TC
* * * *
22505292 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGAGGCAGATC
22505339 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
22505368 ACACAAGTGA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
46 14 0.21
47 29 0.44
48 19 0.29
49 2 0.03
50 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGAGGCAGATC
Found at i:22508151 original size:68 final size:68
Alignment explanation
Indices: 22508005--22508160 Score: 158
Period size: 68 Copynumber: 2.2 Consensus size: 68
22507995 AGCCGATTTG
* * * *
22508005 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
22508070 TATC
65 TATA
* *
22508074 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
22508136 ATATAGTA
62 ATATA-TA
22508144 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
22508161 ACACATGATG
Statistics
Matches: 74, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
67 1 0.01
68 34 0.46
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:22509668 original size:20 final size:19
Alignment explanation
Indices: 22509627--22509671 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
22509617 ATTAGAATGT
22509627 AAAAATTAAACTAAAAACA
1 AAAAATTAAACTAAAAACA
*
22509646 AAAATATTAAATTAAAATA-A
1 AAAA-ATTAAACTAAAA-ACA
22509666 AAAAAT
1 AAAAAT
22509672 GGCTAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 6 0.26
20 16 0.70
21 1 0.04
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAATTAAACTAAAAACA
Found at i:22512054 original size:19 final size:19
Alignment explanation
Indices: 22512032--22512070 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
22512022 ATTGCAATTT
* *
22512032 TAATTTTTATTTTATTTTC
1 TAATTCTTAGTTTATTTTC
*
22512051 TAATTCTTCGTTTATTTTC
1 TAATTCTTAGTTTATTTTC
22512070 T
1 T
22512071 TCTGGCAGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.10, G:0.03, T:0.69
Consensus pattern (19 bp):
TAATTCTTAGTTTATTTTC
Found at i:22515442 original size:25 final size:25
Alignment explanation
Indices: 22515414--22515483 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
22515404 CTCTTTTAAT
22515414 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
22515439 AACTGAGGCAAAGCTCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
22515464 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
22515484 GCACTTCCTC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:22515542 original size:10 final size:10
Alignment explanation
Indices: 22515529--22515563 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
22515519 ATATATGTAT
22515529 ATATCATGGC
1 ATATCATGGC
22515539 ATATCATGTGC
1 ATATCATG-GC
22515550 ATATCATGGC
1 ATATCATGGC
22515560 ATAT
1 ATAT
22515564 TATGTACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (10 bp):
ATATCATGGC
Found at i:22515576 original size:21 final size:21
Alignment explanation
Indices: 22515517--22515576 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
22515507 CCCAACCCAT
*
22515517 GCATA-TATGTATATATCATG
1 GCATATTATGTACATATCATG
* *
22515537 GCATATCATGTGCATATCATG
1 GCATATTATGTACATATCATG
*
22515558 GCATATTATGTACAAATCA
1 GCATATTATGTACATATCA
22515577 GTATCACATG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 5 0.15
21 28 0.85
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (21 bp):
GCATATTATGTACATATCATG
Found at i:22521471 original size:105 final size:105
Alignment explanation
Indices: 22521353--22521543 Score: 364
Period size: 105 Copynumber: 1.8 Consensus size: 105
22521343 ACCTTGAGCC
*
22521353 TACTACCAACATCAAGCCCTTTCCCTTTTCCTTTACCTTTTCCCTTCACAATCGATGCCCTAGCC
1 TACTACCAACATCAAGCCCTTTCCCTTTTCCTTTACCTTTGCCCTTCACAATCGATGCCCTAGCC
*
22521418 ATAGATTCCTTATTTTCCCCTCCTGATTGTGGCCTACCTT
66 ATAGATTCCTCATTTTCCCCTCCTGATTGTGGCCTACCTT
22521458 TACTACCAACATCAAGCCCTTTCCCTTTTCCTTTACCTTTGCCCTTCACAATCGATGCCCTAGCC
1 TACTACCAACATCAAGCCCTTTCCCTTTTCCTTTACCTTTGCCCTTCACAATCGATGCCCTAGCC
22521523 ATAGATTCCTCATTTTCCCCT
66 ATAGATTCCTCATTTTCCCCT
22521544 TCTAATTGAG
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 84 1.00
ACGTcount: A:0.19, C:0.37, G:0.08, T:0.36
Consensus pattern (105 bp):
TACTACCAACATCAAGCCCTTTCCCTTTTCCTTTACCTTTGCCCTTCACAATCGATGCCCTAGCC
ATAGATTCCTCATTTTCCCCTCCTGATTGTGGCCTACCTT
Found at i:22524907 original size:12 final size:12
Alignment explanation
Indices: 22524890--22524914 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22524880 GTCGTAAACA
22524890 GCCTACCACACG
1 GCCTACCACACG
22524902 GCCTACCACACG
1 GCCTACCACACG
22524914 G
1 G
22524915 TCTGTGTCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.48, G:0.20, T:0.08
Consensus pattern (12 bp):
GCCTACCACACG
Found at i:22531532 original size:40 final size:40
Alignment explanation
Indices: 22531483--22531688 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
22531473 TCTTCGGAAT
* * *
22531483 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
22531522 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
22531562 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* **
22531602 TTAGCCCGG-TATAA-CAACTCGCATGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
22531641 TTAGCCCGGATATAATCACTAGCATAAATG-CTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
22531680 TTAGCCCGG
1 TTAGCCCGG
22531689 GTATCATTCA
Statistics
Matches: 140, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 54 0.39
40 84 0.60
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:22539814 original size:40 final size:40
Alignment explanation
Indices: 22539652--22539819 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
22539642 TCTTCGAAAT
* * *
22539652 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * ** * *
22539691 TTAACCCAGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
22539731 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
22539771 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
22539811 TTAGCCCGG
1 TTAGCCCGG
22539820 GTATCATTCA
Statistics
Matches: 104, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 3 0.03
40 100 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:22550318 original size:7 final size:7
Alignment explanation
Indices: 22550286--22550312 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
22550276 ATGTTTAAGA
22550286 ATTTTTT
1 ATTTTTT
22550293 ATTTTTT
1 ATTTTTT
22550300 ATTTTTT
1 ATTTTTT
22550307 ATTTTT
1 ATTTTT
22550313 ACTTTTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
ATTTTTT
Found at i:22553587 original size:16 final size:16
Alignment explanation
Indices: 22553566--22553598 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
22553556 CAGTGTATGT
22553566 ACACACCTGGTACTAA
1 ACACACCTGGTACTAA
22553582 ACACACCTGGTACTAA
1 ACACACCTGGTACTAA
22553598 A
1 A
22553599 ACGTGCCGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.30, G:0.12, T:0.18
Consensus pattern (16 bp):
ACACACCTGGTACTAA
Found at i:22556630 original size:52 final size:52
Alignment explanation
Indices: 22556547--22556652 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
22556537 TAATGCCTTC
* *
22556547 ATATTTTTAGCGTGAAAACCATTGGAACTAGTTCCAAGTCATGGGTTGGGTA
1 ATATTTTTAGCGTGAAAACCACTGCAACTAGTTCCAAGTCATGGGTTGGGTA
*
22556599 ATATTTTTAGCGTGAAAACCACTGCAGCTAGTTCCAAGTCATGGGTTGGGTA
1 ATATTTTTAGCGTGAAAACCACTGCAACTAGTTCCAAGTCATGGGTTGGGTA
22556651 AT
1 AT
22556653 TTACCTCGTG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (52 bp):
ATATTTTTAGCGTGAAAACCACTGCAACTAGTTCCAAGTCATGGGTTGGGTA
Found at i:22558887 original size:40 final size:39
Alignment explanation
Indices: 22558842--22558971 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
22558832 CGGAATATAA
22558842 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
22558882 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
22558922 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
22558962 CCGGATATAA
1 CCGGATATAA
22558972 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22558986 original size:40 final size:40
Alignment explanation
Indices: 22558858--22559009 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
22558848 ATAACCATGT
* * *
22558858 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
22558898 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
22558938 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
22558978 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
22559010 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:22558992 original size:80 final size:80
Alignment explanation
Indices: 22558858--22559007 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
22558848 ATAACCATGT
*
22558858 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
22558922 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
22558938 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
22559001 CCCGGAT
64 CCCGGAT
22559008 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:22566896 original size:40 final size:39
Alignment explanation
Indices: 22566851--22566980 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
22566841 CGGAATATAA
22566851 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
22566891 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
22566931 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
22566971 CCGGATATAA
1 CCGGATATAA
22566981 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:22566995 original size:40 final size:40
Alignment explanation
Indices: 22566867--22567018 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
22566857 ATAACCATGT
* * *
22566867 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
22566907 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
22566947 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
22566987 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
22567019 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:22567001 original size:80 final size:80
Alignment explanation
Indices: 22566867--22567016 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
22566857 ATAACCATGT
*
22566867 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
22566931 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
22566947 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
22567010 CCCGGAT
64 CCCGGAT
22567017 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:22571109 original size:17 final size:18
Alignment explanation
Indices: 22571087--22571120 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22571077 CACATTAAAG
22571087 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
22571104 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
22571121 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:22572426 original size:28 final size:28
Alignment explanation
Indices: 22572367--22572514 Score: 197
Period size: 28 Copynumber: 5.2 Consensus size: 28
22572357 ATCCATACTT
* * *
22572367 ATTCATTTGGCCCCTTTAGGCCCAATCTC
1 ATTCATATGG-CCCATTAGGCCCAATCAC
*
22572396 ATTCATATGGCCCATTGGGCCCAATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
* *
22572424 ATTCATATGGCCCACTAAGCCCAATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
*
22572452 ATTCATATGGCCCATCAGGCCCAATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
* * *
22572480 TTTCATATGGCCCGTCAGGCCCAATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
22572508 ATTCATA
1 ATTCATA
22572515 ATCATGCAAT
Statistics
Matches: 106, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 97 0.92
29 9 0.08
ACGTcount: A:0.26, C:0.34, G:0.14, T:0.26
Consensus pattern (28 bp):
ATTCATATGGCCCATTAGGCCCAATCAC
Found at i:22579892 original size:13 final size:13
Alignment explanation
Indices: 22579874--22579898 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22579864 AATTGATATC
22579874 TGTGAAAATTTTG
1 TGTGAAAATTTTG
22579887 TGTGAAAATTTT
1 TGTGAAAATTTT
22579899 ATCGTTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:22581711 original size:29 final size:29
Alignment explanation
Indices: 22581677--22581810 Score: 81
Period size: 29 Copynumber: 4.6 Consensus size: 29
22581667 TACTCGATTT
* * *
22581677 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
22581706 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
22581735 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *** * *
22581764 TGCACACTCAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
*
22581793 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
22581811 TATTTCCAGC
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
29 84 0.99
30 1 0.01
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:22581769 original size:58 final size:57
Alignment explanation
Indices: 22581736--22581865 Score: 251
Period size: 58 Copynumber: 2.3 Consensus size: 57
22581726 CTTCGAGCTC
22581736 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATA-TTTTCCAGCAT
22581794 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTCCAGCAT
22581851 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
22581866 ATCTCGTCAC
Statistics
Matches: 72, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
57 26 0.36
58 46 0.64
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (57 bp):
GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTCCAGCAT
Found at i:22581798 original size:87 final size:86
Alignment explanation
Indices: 22581707--22581865 Score: 221
Period size: 87 Copynumber: 1.8 Consensus size: 86
22581697 ATTTAAGCCC
* * *
22581707 GCACACACAGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACAC
1 GCACACACAGTGCCATACACTTCCAGCAT-GCACACTCAGTGCCATAT-TTTCCAGCATGCACAC
22581771 TCAGTGCCATATTTTTCCAGCAT
64 TCAGTGCCATATTTTTCCAGCAT
** * * *
22581794 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTCCAGCATGCACACTT
1 GCACACACAGTGCCATACACTTCCAGCATGCACACTCAGTGCCATATTTTCCAGCATGCACACTC
22581859 AGTGCCA
66 AGTGCCA
22581866 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
86 24 0.38
87 38 0.60
88 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (86 bp):
GCACACACAGTGCCATACACTTCCAGCATGCACACTCAGTGCCATATTTTCCAGCATGCACACTC
AGTGCCATATTTTTCCAGCAT
Done.