Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 84 of 292
Found at i:25821865 original size:30 final size:30
Alignment explanation
Indices: 25821819--25821875 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
25821809 ATCCCAAGCC
25821819 TAGGGGCAAAAATGTAAATATGCAAAAGTT
1 TAGGGGCAAAAATGTAAATATGCAAAAGTT
* * * *
25821849 TAGGGGTAAAATTGTAATTTTGCAAAA
1 TAGGGGCAAAAATGTAAATATGCAAAA
25821876 ATTTGAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAATATGCAAAAGTT
Found at i:25822352 original size:46 final size:46
Alignment explanation
Indices: 25822302--25822473 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
25822292 TGAGCATCCA
*
25822302 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * * * *
25822348 AACTCGTTGACTTGACTTCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
25822395 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
25822441 AGCTCATTGAGTTGGGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25822474 GCGGGGTTAC
Statistics
Matches: 98, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 53 0.54
47 26 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:25822463 original size:93 final size:93
Alignment explanation
Indices: 25822295--25822466 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
25822285 GGATGGTTGA
* * * *
25822295 GCATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGACT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGACT
*
25822360 TGACTTCGAGTTCGTGAGATGTAACTAG
66 TGACTCCGAGTTCGTGAGATGTAACTAG
* * *
25822388 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGACT
**
25822453 TGGGTCCGAGTTCG
66 TGACTCCGAGTTCG
25822467 CTTATGGGCG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGACT
TGACTCCGAGTTCGTGAGATGTAACTAG
Found at i:25827250 original size:19 final size:20
Alignment explanation
Indices: 25827226--25827263 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
25827216 GGTACCACCA
25827226 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
25827245 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
25827264 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:25832098 original size:40 final size:40
Alignment explanation
Indices: 25832034--25832120 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
25832024 AAAATCAAAT
* * * * *
25832034 AGATCGAGTATTAGCGGCATTTTT-ATGAAAGCGCTGCTAA
1 AGATTGAGCATTAGCGACATTTTTAAGGAAA-CGCCGCTAA
25832074 AGATTGAGCATTAGCGACATTTTTAAGGAAACGCCGCTAA
1 AGATTGAGCATTAGCGACATTTTTAAGGAAACGCCGCTAA
25832114 AGATTGA
1 AGATTGA
25832121 CCTATAGTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
40 36 0.88
41 5 0.12
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (40 bp):
AGATTGAGCATTAGCGACATTTTTAAGGAAACGCCGCTAA
Found at i:25833025 original size:21 final size:21
Alignment explanation
Indices: 25833001--25833221 Score: 69
Period size: 21 Copynumber: 10.1 Consensus size: 21
25832991 TCTCTAGTCA
*
25833001 TAAATCATAAACTATAAACCT
1 TAAATCCTAAACTATAAACCT
*
25833022 TAAACCCTAAA-TATTAAACCT
1 TAAATCCTAAACTA-TAAACCT
* * *
25833043 TGAATCCTAAACCATAAAACCC
1 TAAATCCTAAACTAT-AAACCT
*
25833065 TAAA-CTATAAACAGTACTAAACCCT
1 TAAATC-CTAAAC--TA-TAAA-CCT
* *
25833090 TAAACCCTTAAA-TATAGATTCC-
1 TAAATCC-TAAACTATA-A-ACCT
* *
25833112 TAAATCATAAAACTGTAAACC-
1 TAAATCCT-AAACTATAAACCT
* *
25833133 TAAATCACTAGACCT-TAAA-TT
1 TAAATC-CTA-AACTATAAACCT
* * *
25833154 ATAAAACTTAAAACTATAAACCC
1 -TAAATCCT-AAACTATAAACCT
* * *
25833177 TAAATCTTAAACCATAAACCC
1 TAAATCCTAAACTATAAACCT
* *
25833198 TAAATCCAAAACCATAAAACCT
1 TAAATCCTAAACTAT-AAACCT
25833220 TA
1 TA
25833222 GTAAACCCTT
Statistics
Matches: 149, Mismatches: 29, Indels: 43
0.67 0.13 0.19
Matches are distributed among these distances:
20 2 0.01
21 70 0.47
22 53 0.36
23 8 0.05
24 4 0.03
25 7 0.05
26 5 0.03
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.25
Consensus pattern (21 bp):
TAAATCCTAAACTATAAACCT
Found at i:25833570 original size:3 final size:3
Alignment explanation
Indices: 25833562--25833614 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
25833552 ATTAATAGTA
25833562 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
25833610 AAT AA
1 AAT AA
25833615 CAACAACAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:25837677 original size:15 final size:14
Alignment explanation
Indices: 25837655--25837814 Score: 83
Period size: 14 Copynumber: 12.0 Consensus size: 14
25837645 TCAATCTTAT
25837655 TTTAATTAATATAA
1 TTTAATTAATATAA
* *
25837669 TTTGGATTAAT-TTA
1 TTT-AATTAATATAA
25837683 TTTAATT-AT-T-A
1 TTTAATTAATATAA
25837694 TTTAATTAATATAA
1 TTTAATTAATATAA
* *
25837708 TTTGGATTAAT-TTA
1 TTT-AATTAATATAA
*
25837722 TTT-A--AATATTA
1 TTTAATTAATATAA
25837733 TTTAATTAATATAA
1 TTTAATTAATATAA
* *
25837747 TTTGGATTAAT-TTA
1 TTT-AATTAATATAA
*
25837761 TTT-A--AATATTA
1 TTTAATTAATATAA
*
25837772 TTAAATTAATATAA
1 TTTAATTAATATAA
* * *
25837786 TTTTTATAAATATTA
1 -TTTAATTAATATAA
*
25837801 TTTAATTAAAATAA
1 TTTAATTAATATAA
25837815 ATTTTTTTCC
Statistics
Matches: 113, Mismatches: 18, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
10 6 0.05
11 19 0.17
12 9 0.08
13 4 0.04
14 47 0.42
15 28 0.25
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (14 bp):
TTTAATTAATATAA
Found at i:25837696 original size:11 final size:11
Alignment explanation
Indices: 25837680--25837740 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 11
25837670 TTGGATTAAT
25837680 TTATTTAATTA
1 TTATTTAATTA
25837691 TTATTTAATTAA
1 TTATTTAATT-A
*
25837703 TATAATTTGGATTAA
1 T-T-ATTT-AATT-A
*
25837718 TTTATTTAAATA
1 -TTATTTAATTA
25837730 TTATTTAATTA
1 TTATTTAATTA
25837741 ATATAATTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
11 20 0.49
12 3 0.07
13 3 0.07
14 8 0.20
15 6 0.15
16 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (11 bp):
TTATTTAATTA
Found at i:25837699 original size:39 final size:39
Alignment explanation
Indices: 25837655--25837788 Score: 250
Period size: 39 Copynumber: 3.4 Consensus size: 39
25837645 TCAATCTTAT
*
25837655 TTTAATTAATATAATTTGGATTAATTTATTTAATTATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
25837694 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
25837733 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
25837772 TTAAATTAATATAATTT
1 TTTAATTAATATAATTT
25837789 TTATAAATAT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
Found at i:25837700 original size:20 final size:19
Alignment explanation
Indices: 25837674--25837808 Score: 94
Period size: 20 Copynumber: 6.9 Consensus size: 19
25837664 TATAATTTGG
25837674 ATTAATTTATTTAATTATT
1 ATTAATTTATTTAATTATT
* * *
25837693 ATTTAATTAATATAATT-TGG
1 A-TTAATTTATTTAATTAT-T
*
25837713 ATTAATTTATTTAAATATT
1 ATTAATTTATTTAATTATT
* * *
25837732 ATTTAATTAATATAATT-TGG
1 A-TTAATTTATTTAATTAT-T
*
25837752 ATTAATTTATTTAAATATT
1 ATTAATTTATTTAATTATT
* * *
25837771 ATTAAATTAATATAATTTTT
1 ATT-AATTTATTTAATTATT
*
25837791 ATAAATATTATTTAATTA
1 ATTAAT-TTATTTAATTA
25837809 AAATAAATTT
Statistics
Matches: 85, Mismatches: 23, Indels: 15
0.69 0.19 0.12
Matches are distributed among these distances:
19 34 0.40
20 51 0.60
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (19 bp):
ATTAATTTATTTAATTATT
Found at i:25837701 original size:8 final size:9
Alignment explanation
Indices: 25837675--25837807 Score: 65
Period size: 9 Copynumber: 13.7 Consensus size: 9
25837665 ATAATTTGGA
25837675 TTAATTTAT
1 TTAATTTAT
25837684 TTAATTATTAT
1 TTAA-T-TTAT
*
25837695 TTAATTAAT
1 TTAATTTAT
*
25837704 ATAATTTGGA-
1 TTAATTT--AT
25837714 TTAATTTAT
1 TTAATTTAT
25837723 TTAAATATTAT
1 TT-AAT-TTAT
*
25837734 TTAATTAAT
1 TTAATTTAT
*
25837743 ATAATTTGGA-
1 TTAATTT--AT
25837753 TTAATTTAT
1 TTAATTTAT
25837762 TTAAATATTAT
1 TT-AAT-TTAT
* *
25837773 TAAATTAAT
1 TTAATTTAT
*
25837782 ATAATTT-T
1 TTAATTTAT
25837790 TATAAATATTAT
1 T-T-AAT-TTAT
25837802 TTAATT
1 TTAATT
25837808 AAAATAAATT
Statistics
Matches: 94, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
8 3 0.03
9 33 0.35
10 32 0.34
11 24 0.26
12 2 0.02
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (9 bp):
TTAATTTAT
Found at i:25837796 original size:29 final size:28
Alignment explanation
Indices: 25837754--25837821 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 28
25837744 TAATTTGGAT
*
25837754 TAATTTATTTAAATATTATTAAATTAATA
1 TAATTT-TTTAAATATTATTAAATTAAAA
*
25837783 TAATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTT-TAAATATTATTAAATTAAAA
25837812 TAAATTTTTT
1 T-AATTTTTT
25837822 TCCATGTGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 2 0.06
29 26 0.74
30 7 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
TAATTTTTTAAATATTATTAAATTAAAA
Found at i:25838105 original size:9 final size:9
Alignment explanation
Indices: 25838088--25838362 Score: 295
Period size: 9 Copynumber: 31.7 Consensus size: 9
25838078 TATATACTTG
25838088 AACTTACAT
1 AACTTACAT
*
25838097 AACTCACAT
1 AACTTACAT
25838106 AACTTACAT
1 AACTTACAT
*
25838115 AACTTATAT
1 AACTTACAT
25838124 AACTTACAT
1 AACTTACAT
25838133 AACTTACAT
1 AACTTACAT
*
25838142 AACTCACAT
1 AACTTACAT
25838151 AACTTACAT
1 AACTTACAT
25838160 AA-TTCACAT
1 AACTT-ACAT
25838169 AACTTACAT
1 AACTTACAT
25838178 AACTTACAT
1 AACTTACAT
*
25838187 AACTCACAT
1 AACTTACAT
25838196 AAC-T---T
1 AACTTACAT
25838201 -ACTTACAT
1 AACTTACAT
*
25838209 AACTCACAT
1 AACTTACAT
*
25838218 AACTCACAT
1 AACTTACAT
*
25838227 AACTCACAT
1 AACTTACAT
25838236 AACTTACAT
1 AACTTACAT
25838245 AACTT--AT
1 AACTTACAT
*
25838252 -ATTTACAT
1 AACTTACAT
25838260 AACTTACAT
1 AACTTACAT
*
25838269 AACTCACAT
1 AACTTACAT
* *
25838278 AACTCATAT
1 AACTTACAT
*
25838287 AACTTACAG
1 AACTTACAT
25838296 AACTTACAT
1 AACTTACAT
*
25838305 AATTTACAT
1 AACTTACAT
25838314 AACTTACAT
1 AACTTACAT
25838323 AA--TACAT
1 AACTTACAT
* *
25838330 AA-ATAAAT
1 AACTTACAT
* *
25838338 ATCATATCAT
1 AACTTA-CAT
25838348 AACTTACAT
1 AACTTACAT
25838357 AACTTA
1 AACTTA
25838363 ATTAGAGTTA
Statistics
Matches: 228, Mismatches: 25, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 3 0.01
7 9 0.04
8 10 0.04
9 194 0.85
10 8 0.04
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:25838207 original size:22 final size:22
Alignment explanation
Indices: 25838179--25838242 Score: 100
Period size: 22 Copynumber: 3.1 Consensus size: 22
25838169 AACTTACATA
25838179 ACTTACATAACTCACATAACTT
1 ACTTACATAACTCACATAACTT
25838201 ACTTACATAACTCACATAAC-T
1 ACTTACATAACTCACATAACTT
25838222 -C--ACATAACTCACATAACTT
1 ACTTACATAACTCACATAACTT
25838241 AC
1 AC
25838243 ATAACTTATA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
18 16 0.40
19 1 0.03
20 2 0.05
21 1 0.03
22 20 0.50
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (22 bp):
ACTTACATAACTCACATAACTT
Found at i:25843874 original size:21 final size:21
Alignment explanation
Indices: 25843848--25843906 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
25843838 TTAGAGTTGA
*
25843848 GGCAGCAGAGAGGGAGGCAGG
1 GGCAGCAGCGAGGGAGGCAGG
*
25843869 GGCAGCAGCGAGGGAGGCAGT
1 GGCAGCAGCGAGGGAGGCAGG
*
25843890 GGCAGTAGCGAGGGAGG
1 GGCAGCAGCGAGGGAGG
25843907 TAGAGCAGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.25, C:0.15, G:0.56, T:0.03
Consensus pattern (21 bp):
GGCAGCAGCGAGGGAGGCAGG
Found at i:25844298 original size:43 final size:42
Alignment explanation
Indices: 25844251--25844388 Score: 195
Period size: 43 Copynumber: 3.2 Consensus size: 42
25844241 AAAAAAGCGT
* *
25844251 CGCTAAAAGTCATGGCTTTTAGCGGCGCTTTCCCAACAAACGC
1 CGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCC-ACAAACGC
* * *
25844294 CGCTAAAAGCCATGACTTTTAACGGCGCTTCCCCTACAAACAC
1 CGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCC-ACAAACGC
*
25844337 CGCTAAAAGCCATGACTTTTAGCGGCACTTTTCCCACAAACGC
1 CGCTAAAAGCCATGACTTTTAGCGGCGC-TTTCCCACAAACGC
25844380 CGCTAAAAG
1 CGCTAAAAG
25844389 TCTTGATCTT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 79 0.94
44 5 0.06
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (42 bp):
CGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCACAAACGC
Found at i:25845629 original size:40 final size:40
Alignment explanation
Indices: 25845574--25845653 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
25845564 GAAAAGAAAG
25845574 TAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAGAT
1 TAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAGAT
25845614 TAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAGAT
1 TAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAGAT
25845654 AAGGAATCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.45, C:0.07, G:0.15, T:0.33
Consensus pattern (40 bp):
TAAGCTTATAGCTTAGTAAGTAAGTATATAAATAACAGAT
Found at i:25845643 original size:20 final size:20
Alignment explanation
Indices: 25845571--25845637 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
25845561 AGAGAAAAGA
25845571 AAGTAAGCTTATAGCTTAGT
1 AAGTAAGCTTATAGCTTAGT
** **
25845591 AAGTAAG-TATATA-AATAAC
1 AAGTAAGCT-TATAGCTTAGT
*
25845610 AGATTAAGCTTATAGCTTAGT
1 A-AGTAAGCTTATAGCTTAGT
25845631 AAGTAAG
1 AAGTAAG
25845638 TATATAAATA
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 4 0.12
20 25 0.76
21 4 0.12
ACGTcount: A:0.43, C:0.07, G:0.18, T:0.31
Consensus pattern (20 bp):
AAGTAAGCTTATAGCTTAGT
Found at i:25848789 original size:46 final size:46
Alignment explanation
Indices: 25848692--25848862 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
25848682 GGTTATTGTG
* * *
25848692 AGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGATGAA
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATG-A
* *
25848740 AGCTAGTGTAAGA-CATGTTTGGGACATGTATCGGCCTCGAGATGTA
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATG-A
* *
25848786 AGCTAGTGTAAGA-CATG-CTAGGACATGCATCAG-CTACGAGATG-
1 AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGA
*
25848829 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 AGCTAGTGTAAGACCATGTCTGGGACAT-GCATC
25848863 AGCATCCTAC
Statistics
Matches: 109, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
43 12 0.11
44 6 0.06
45 27 0.25
46 37 0.34
47 14 0.13
48 13 0.12
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGA
Found at i:25861369 original size:49 final size:49
Alignment explanation
Indices: 25861307--25861481 Score: 215
Period size: 49 Copynumber: 3.5 Consensus size: 49
25861297 TGAGGTCACG
* * *
25861307 TGTGTAGTACTAAGTGCGGGCTACTACGTGTACCGGATAATTGTTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCA
* * * * * *
25861356 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGATCGCA
* * * *
25861407 TGTGTAGTACTAAGTGCAGGATACTACGTGTACCATATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCA
25861456 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
25861482 TGCGTACTAG
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 65 0.62
50 2 0.02
51 38 0.36
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCGCA
Found at i:25861475 original size:100 final size:100
Alignment explanation
Indices: 25861302--25861488 Score: 320
Period size: 100 Copynumber: 1.9 Consensus size: 100
25861292 TATTGTGAGG
* * * *
25861302 TCACGTGTGTAGTACTAAGTGCGGGCTACTACGTGTACCGGATAATTGTTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
25861367 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* *
25861402 TCACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCATATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
25861467 AAGTGCAGGCTACTATGCGTAC
66 AAGTGCAGGCTACTATGCGTAC
25861489 TAGATAGCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:25863204 original size:13 final size:13
Alignment explanation
Indices: 25863186--25863218 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
25863176 GGTCACACGC
25863186 CCGTGTGAACAGG
1 CCGTGTGAACAGG
25863199 CCGTGTGAACAGG
1 CCGTGTGAACAGG
25863212 CCGTGTG
1 CCGTGTG
25863219 CCTCACACGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.39, T:0.18
Consensus pattern (13 bp):
CCGTGTGAACAGG
Found at i:25864461 original size:39 final size:40
Alignment explanation
Indices: 25864407--25864501 Score: 165
Period size: 39 Copynumber: 2.4 Consensus size: 40
25864397 CTCGGTATTG
25864407 CACACTTAGTGCCTCAGATAGCCAAAGCTATTTTGAATC-
1 CACACTTAGTGCCTCAGATAGCCAAAGCTATTTTGAATCT
*
25864446 CACACTTAGTGCCTCAGATAGCCAAAGTTATTTTGAATCT
1 CACACTTAGTGCCTCAGATAGCCAAAGCTATTTTGAATCT
*
25864486 CACAGTTAGTGCCTCA
1 CACACTTAGTGCCTCA
25864502 TACCATTGAT
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
39 38 0.72
40 15 0.28
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (40 bp):
CACACTTAGTGCCTCAGATAGCCAAAGCTATTTTGAATCT
Found at i:25867394 original size:26 final size:25
Alignment explanation
Indices: 25867360--25867435 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 25
25867350 AGCTCTTGAG
25867360 TAAAGGCTCTTCGTGAGCTTCC-AGAT
1 TAAAGGCTCTT-GTGAGCTTCCTA-AT
* *
25867386 TAAAAGCTCTTTGTGAACTTCCTAAT
1 TAAAGGCTC-TTGTGAGCTTCCTAAT
*
25867412 T-ATGGCTCTTGTGAGCTTCCTAAT
1 TAAAGGCTCTTGTGAGCTTCCTAAT
25867436 ATATAGCTCG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
24 15 0.35
25 5 0.12
26 20 0.47
27 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (25 bp):
TAAAGGCTCTTGTGAGCTTCCTAAT
Found at i:25867430 original size:24 final size:24
Alignment explanation
Indices: 25867365--25867444 Score: 81
Period size: 26 Copynumber: 3.2 Consensus size: 24
25867355 TTGAGTAAAG
*
25867365 GCTCTTCGTGAGCTTCC-AGATTAAAA
1 GCTCTT-GTGAGCTTCCTA-ATT-ATA
* *
25867391 GCTCTTTGTGAACTTCCTAATTATG
1 GCTC-TTGTGAGCTTCCTAATTATA
25867416 GCTCTTGTGAGCTTCCTAATATATA
1 GCTCTTGTGAGCTTCCTAAT-TATA
25867441 GCTC
1 GCTC
25867445 GGATAAGCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
24 15 0.33
25 12 0.26
26 16 0.35
27 3 0.07
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (24 bp):
GCTCTTGTGAGCTTCCTAATTATA
Found at i:25869415 original size:47 final size:47
Alignment explanation
Indices: 25869343--25869547 Score: 293
Period size: 47 Copynumber: 4.3 Consensus size: 47
25869333 CCCTTCGGGA
* * * * * * *
25869343 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
25869390 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25869437 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25869484 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
25869533 CTTATCACATATATA
1 CTTATCACATATATA
25869548 TATCTCATAC
Statistics
Matches: 145, Mismatches: 11, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
47 99 0.68
49 46 0.32
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25869421 original size:25 final size:25
Alignment explanation
Indices: 25869393--25869471 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
25869383 ACTCGGCCCT
*
25869393 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
25869418 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
25869440 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
25869465 ATCACAT
1 ATCACAT
25869472 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:25873704 original size:40 final size:40
Alignment explanation
Indices: 25873655--25873924 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
25873645 CCAGCATGAT
* *
25873655 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* * *
25873695 TGCTCTTCGGGACTTAGTCCGGTTGCATTACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
25873735 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
25873775 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
25873815 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
25873855 TGCTCTTC--GAATTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* * *
25873893 TGCTCTTCGGGATTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGTCCGGATACATCACT
25873925 CTCAATTCTC
Statistics
Matches: 214, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.17
40 178 0.83
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:25876118 original size:47 final size:47
Alignment explanation
Indices: 25876046--25876356 Score: 397
Period size: 47 Copynumber: 6.3 Consensus size: 47
25876036 CCCTTCGGGA
* * * * * * *
25876046 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
25876093 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25876140 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25876187 CTTATCACATATATACACACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----AT------ATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
25876246 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25876293 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
25876342 CTTATCACATATATA
1 CTTATCACATATATA
25876357 TATCTCATAC
Statistics
Matches: 239, Mismatches: 11, Indels: 28
0.86 0.04 0.10
Matches are distributed among these distances:
47 140 0.59
49 51 0.21
51 2 0.01
55 2 0.01
57 4 0.02
59 40 0.17
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25876124 original size:25 final size:25
Alignment explanation
Indices: 25876096--25876174 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
25876086 ACTCGGCCCT
*
25876096 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
25876121 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
25876143 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
25876168 ATCACAT
1 ATCACAT
25876175 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:25876283 original size:106 final size:99
Alignment explanation
Indices: 25876096--25876356 Score: 402
Period size: 106 Copynumber: 2.6 Consensus size: 99
25876086 ACTCGGCCCT
* * *
25876096 ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACCTT
1 ATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTT
25876161 CACATTCATCACATCGGCCATTAGGCCTTATCAC
66 CACATTCATCACATCGGCCATTAGGCCTTATCAC
25876195 ATATATACACACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ----AT---CACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
25876260 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
59 ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
25876301 AT---ATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 ATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
25876357 TATCTCATAC
Statistics
Matches: 151, Mismatches: 4, Indels: 13
0.90 0.02 0.08
Matches are distributed among these distances:
96 54 0.36
102 2 0.01
103 2 0.01
106 93 0.62
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (99 bp):
ATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTT
CACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:25876374 original size:153 final size:152
Alignment explanation
Indices: 25876060--25876356 Score: 486
Period size: 153 Copynumber: 1.9 Consensus size: 152
25876050 TCACATTTAT
* * * *
25876060 ACACTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCATCA
* *
25876125 CATTGGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTT
66 CATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTT
25876190 ATCACATATATACACACATATAC
131 ATCACATATATACACACA-ATAC
* * *
25876213 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCATCA
25876278 CATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CATCGGCCATTAGGCCTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGCC
25876343 TTATCACATATATA
129 TTATCACATATATA
25876357 TATCTCATAC
Statistics
Matches: 133, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
153 89 0.67
154 1 0.01
155 43 0.32
ACGTcount: A:0.30, C:0.32, G:0.08, T:0.30
Consensus pattern (152 bp):
ACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCATCA
CATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACATATATACACACAATAC
Found at i:25881196 original size:40 final size:40
Alignment explanation
Indices: 25881150--25881316 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
25881140 CGGAATATAA
25881150 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
25881190 TCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
25881230 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
25881270 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
25881309 CCGGATAT
1 CCGGATAT
25881317 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:25886354 original size:3 final size:3
Alignment explanation
Indices: 25886346--25886374 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
25886336 ACAAGGCCAT
25886346 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
25886375 GCCGTGAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:25888718 original size:47 final size:47
Alignment explanation
Indices: 25888667--25888966 Score: 465
Period size: 47 Copynumber: 6.4 Consensus size: 47
25888657 GATGTACAAG
* * * *
25888667 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
25888714 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
25888761 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
25888808 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
25888855 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
25888902 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
25888949 GTGAATAAATGTGATAAG
1 GTGTATATATGTGATAAG
25888967 TCCCGAAGGG
Statistics
Matches: 238, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 238 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:25890262 original size:19 final size:18
Alignment explanation
Indices: 25890233--25890268 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
25890223 AAGTACATTG
25890233 TGTGATGTGATGATATTA
1 TGTGATGTGATGATATTA
*
25890251 TGTGATTGTGATGTTATT
1 TGTGA-TGTGATGATATT
25890269 GCAAATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (18 bp):
TGTGATGTGATGATATTA
Found at i:25890606 original size:22 final size:22
Alignment explanation
Indices: 25890572--25890619 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
25890562 AAGGGGAAGA
* * *
25890572 TATGTGGCTATTTATATGCAAT
1 TATGCGGCCATTTATAGGCAAT
*
25890594 TATGCGGCCATTTATCGGCAAT
1 TATGCGGCCATTTATAGGCAAT
25890616 TATG
1 TATG
25890620 TGGTGGCTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (22 bp):
TATGCGGCCATTTATAGGCAAT
Found at i:25892098 original size:26 final size:26
Alignment explanation
Indices: 25892061--25892196 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
25892051 TGATACAAAT
* *
25892061 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25892087 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
25892113 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25892139 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25892165 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
25892191 TGATAA
1 TGATAA
25892197 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:25894227 original size:137 final size:137
Alignment explanation
Indices: 25893981--25894267 Score: 529
Period size: 137 Copynumber: 2.1 Consensus size: 137
25893971 GAGTAGTCTC
* *
25893981 CCCAAATGGGCTTGCATATGTTTACTGATGTTGTATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
25894046 TGTTATCTGAATAAGGCGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGCGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
25894111 ACTGTTA
131 ACTGTTA
25894118 CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
25894183 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGCGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
25894248 ACTGTTA
131 ACTGTTA
**
25894255 CCTGAATGGGCTT
1 CCCAAATGGGCTT
25894268 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 145 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGCGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:25896507 original size:48 final size:48
Alignment explanation
Indices: 25896380--25896617 Score: 248
Period size: 48 Copynumber: 4.9 Consensus size: 48
25896370 AAAAGGGTAA
* * *
25896380 AATGTCGATGCCATGTCCCGAACATGGTCTTACACTGGCTCTCATACATC
1 AATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA-A-C
* *
25896430 AGTGTCGATGCCATG-TCCTAGACATGGTCTTACACTGGCTCACATAAC
1 AATGTCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCACATAAC
* ** **
25896478 AATG-CTGATGCCATGTTCCAAACATGGTCTTACACTAGCTTGCATATT
1 AATGTC-GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAAC
* * * * * *
25896526 GA-GGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAC
1 AATGTC-GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAAC
* *
25896574 AATGTCAATGCCATGTTCCAAACATGGTCTTACACTGACTCACA
1 AATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACA
25896618 CATAACCCTA
Statistics
Matches: 156, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
47 2 0.01
48 108 0.69
49 8 0.05
50 38 0.24
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (48 bp):
AATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAAC
Found at i:25896558 original size:96 final size:98
Alignment explanation
Indices: 25896380--25896609 Score: 317
Period size: 96 Copynumber: 2.4 Consensus size: 98
25896370 AAAAGGGTAA
* * *
25896380 AATGTCGATGCCATGTCCCGAACATGGTCTTACACTGGCTCTCATACATCAGTGTCGATGCCATG
1 AATGTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATACATCAGTGTCGATGCCATG
* *
25896445 TCCTAGACATGGTCTTACACTGGCTCACATAAC
66 TCCCAGACATGGTCTTACACTAGCTCACATAAC
* *
25896478 AATG-CTGATGCCATGTTCCAAACATGGTCTTACACTAGCT-TGCATA-TTGAG-G-CTGATGCC
1 AATGTC-GATGCCATGTTCCAAACATGGTCTTACACTAGCTCT-CATACATCAGTGTC-GATGCC
*
25896538 ATGTCCCAGACATGGTCTTACACTAGCTCTCATAAC
63 ATGTCCCAGACATGGTCTTACACTAGCTCACATAAC
*
25896574 AATGTCAATGCCATGTTCCAAACATGGTCTTACACT
1 AATGTCGATGCCATGTTCCAAACATGGTCTTACACT
25896610 GACTCACACA
Statistics
Matches: 119, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
95 1 0.01
96 73 0.61
97 6 0.05
98 39 0.33
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (98 bp):
AATGTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATACATCAGTGTCGATGCCATG
TCCCAGACATGGTCTTACACTAGCTCACATAAC
Found at i:25902070 original size:40 final size:40
Alignment explanation
Indices: 25902036--25902132 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 40
25902026 TGGCTACTCG
* * *
25902036 TGGCATTTAGTGTGCGGTTCGACATAGCTTTGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTTGGCTATACA
* * * **
25902076 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTTGGCTATACA
* *
25902116 CGGCAATTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
25902133 GATATCAAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.21, C:0.15, G:0.30, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTTGGCTATACA
Found at i:25902163 original size:28 final size:28
Alignment explanation
Indices: 25902117--25902217 Score: 141
Period size: 28 Copynumber: 3.6 Consensus size: 28
25902107 GGCTATGTAC
* *
25902117 GGCAATTAGTGTGCGAGATATCAAGTGT
1 GGCACTTAGTGTGCGAGATATCGAGTGT
* *
25902145 GGAACTTAGTGTGCAAGATATCGAGTGT
1 GGCACTTAGTGTGCGAGATATCGAGTGT
*
25902173 GGCACTTAGTGT-CTGAGATATCGAGTAT
1 GGCACTTAGTGTGC-GAGATATCGAGTGT
25902201 GGCACTTAGTGTGCGAG
1 GGCACTTAGTGTGCGAG
25902218 GCATTGAGTA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
27 1 0.02
28 62 0.97
29 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.33, T:0.29
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGATATCGAGTGT
Found at i:25905713 original size:38 final size:38
Alignment explanation
Indices: 25905569--25905715 Score: 161
Period size: 38 Copynumber: 3.8 Consensus size: 38
25905559 CGAGGTATAA
* * * * * *
25905569 AACCCGAACATAACACCAGCACAAAGCCTACGTGACTTT
1 AACCCGGATATAATACCAGCACTAAGCCTGCGGGA-TTT
* * *
25905608 AAACTCAGATATAATACCAGCACTAGGCCTGCGGGATTT
1 -AACCCGGATATAATACCAGCACTAAGCCTGCGGGATTT
*
25905647 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACTAAGCCTGCGGGATTT
*
25905685 AACCCGGATATAATTCCAGCA-TATAGCCTGC
1 AACCCGGATATAATACCAGCACTA-AGCCTGC
25905716 TGGTCTTTAA
Statistics
Matches: 91, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 61 0.67
39 3 0.03
40 26 0.29
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACTAAGCCTGCGGGATTT
Found at i:25905715 original size:76 final size:78
Alignment explanation
Indices: 25905569--25905715 Score: 174
Period size: 78 Copynumber: 1.9 Consensus size: 78
25905559 CGAGGTATAA
* * *
25905569 AACCCGAACATAACACCAGCACAAAGCCTACGTGACTTTAAACTCAGATATAATACCAGCACTAG
1 AACCCGAACATAACACCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTAA
25905634 GCCTGCGGGATTT
66 GCCTGCGGGATTT
* * * * * * *
25905647 AACCCGGATATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATTCCAGCA-TAT
1 AACCCGAACATAACACCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTA-
25905709 AGCCTGC
65 AGCCTGC
25905716 TGGTCTTTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
75 2 0.03
76 24 0.41
77 3 0.05
78 29 0.50
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (78 bp):
AACCCGAACATAACACCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTAA
GCCTGCGGGATTT
Found at i:25907638 original size:45 final size:45
Alignment explanation
Indices: 25907574--25907747 Score: 199
Period size: 45 Copynumber: 3.8 Consensus size: 45
25907564 TGTAACCCGC
* *
25907574 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
25907619 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
25907665 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
25907712 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
25907748 ATGCCCAAAC
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 35 0.32
46 33 0.31
47 32 0.30
49 3 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:25907739 original size:93 final size:92
Alignment explanation
Indices: 25907581--25907752 Score: 299
Period size: 93 Copynumber: 1.9 Consensus size: 92
25907571 CGCCCATAAG
*
25907581 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
25907646 CGAGCTCGGATGCCTAGTTACATCTCT
66 CGAGCTCGGATGCCTAGTTACATCTCT
* *
25907673 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
25907738 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
25907753 CAAACATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 28 0.37
93 47 0.63
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCT
Found at i:25910206 original size:15 final size:15
Alignment explanation
Indices: 25910133--25910197 Score: 96
Period size: 15 Copynumber: 4.4 Consensus size: 15
25910123 CAAAGATAAC
*
25910133 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
25910147 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
25910162 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
25910177 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
25910192 AAGAAA
1 AAGAAA
25910198 CCCAAGATAC
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
14 8 0.17
15 38 0.83
ACGTcount: A:0.60, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:25913287 original size:93 final size:91
Alignment explanation
Indices: 25913129--25913299 Score: 288
Period size: 93 Copynumber: 1.9 Consensus size: 91
25913119 CGCCCATAAG
*
25913129 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAGTGAACTCGGACTCAACTCAAC
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
25913194 GAGCTCGGATGCCTAGTTACATCTCT
66 GAGCTCGGATGCCTAGTTACATCTCT
* *
25913220 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCAT-AGTGAACTCGGACTCAACTCA
*
25913285 ACGAGTTCGGATGCC
64 ACGAGCTCGGATGCC
25913300 CAAACATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
91 28 0.38
92 11 0.15
93 35 0.47
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (91 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCT
Found at i:25913314 original size:46 final size:47
Alignment explanation
Indices: 25913130--25913314 Score: 154
Period size: 46 Copynumber: 4.0 Consensus size: 47
25913120 GCCCATAAGC
* ** *
25913130 GAACTCGGACTCAACTCAACGAGCTCGG-CGTTC--GCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCATAGT
* *
25913174 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC-T--C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--TACATC-CATAGT
* *** *
25913221 GAACTCGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCAT-AGT
* *
25913267 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCC-TAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCATAGT
25913313 GA
1 GA
25913315 CATGTCACTT
Statistics
Matches: 113, Mismatches: 16, Indels: 22
0.75 0.11 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.05
44 28 0.25
45 3 0.03
46 34 0.30
47 29 0.26
48 6 0.05
49 5 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCATAGT
Found at i:25914815 original size:2 final size:2
Alignment explanation
Indices: 25914803--25914838 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
25914793 CACTTTCAAA
25914803 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25914839 CATTCGACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:25917760 original size:58 final size:58
Alignment explanation
Indices: 25917640--25917806 Score: 291
Period size: 58 Copynumber: 2.9 Consensus size: 58
25917630 GCCCACTGAT
* *
25917640 CGATCTCACACACATAGTGCTCGGTTAAA-GAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTAC
*
25917697 CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCACACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTAC
*
25917755 CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
25917807 TAATCACTCG
Statistics
Matches: 104, Mismatches: 5, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
57 28 0.27
58 76 0.73
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTAC
Found at i:25917794 original size:29 final size:29
Alignment explanation
Indices: 25917648--25917803 Score: 115
Period size: 29 Copynumber: 5.4 Consensus size: 29
25917638 ATCGATCTCA
* *
25917648 CACACATAGTGCTCGGTTAAA-GAACTCG
1 CACACACAGTGCTCGGTTAAACGAATTCG
** *
25917676 CACACACAGTGCCTCAATT-ACCG-ATCTCG
1 CACACACAGTG-CTCGGTTAAACGAAT-TCG
* * *
25917705 CACACATAGTGCTCGGTTAAAGGAATTCA
1 CACACACAGTGCTCGGTTAAACGAATTCG
** *
25917734 CACACACAGTGCCTCAATT-ACCG-ATCTCG
1 CACACACAGTG-CTCGGTTAAACGAAT-TCG
* * *
25917763 CACACATAGTGCTCGGTTAAAGGAATTTG
1 CACACACAGTGCTCGGTTAAACGAATTCG
25917792 CACACACAGTGC
1 CACACACAGTGC
25917804 CTCTAATCAC
Statistics
Matches: 95, Mismatches: 24, Indels: 17
0.70 0.18 0.12
Matches are distributed among these distances:
28 24 0.25
29 62 0.65
30 9 0.09
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (29 bp):
CACACACAGTGCTCGGTTAAACGAATTCG
Found at i:25919658 original size:38 final size:38
Alignment explanation
Indices: 25919569--25919731 Score: 146
Period size: 42 Copynumber: 4.1 Consensus size: 38
25919559 TAAAACCCAA
* * * * *
25919569 ATATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAG
1 ATATAATACCAGCACAAAGCCTGCGGGA-TTT-AACCCGG
* *
25919609 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
25919647 ATATAATACCAGCCAGCACAAAGCCTGCGGGATTTAACCCGG
1 ATATAAT---A-CCAGCACAAAGCCTGCGGGATTTAACCCGG
* * * **
25919689 ATATAATTCCAGCATATAGCCTGCTGGTCTTTAAGCCCGG
1 ATATAATACCAGCACAAAGCCTGC-GGGATTTAA-CCCGG
25919729 ATA
1 ATA
25919732 CACATCAAAT
Statistics
Matches: 104, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
38 26 0.25
39 10 0.10
40 32 0.31
41 1 0.01
42 35 0.34
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGG
Found at i:25919728 original size:82 final size:82
Alignment explanation
Indices: 25919577--25919731 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 82
25919567 AAATATAACA
* * *
25919577 CCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTAAGCCTGCGGGATTTAA
25919642 CCCGGATATAATACCAG
66 CCCGGATATAATACCAG
* * * **
25919659 CCAGCACAAAGCCTGCGGGA-TTT-AACCCGGATATAATTCCAGCA-TATAGCCTGCTGGTCTTT
1 CCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTA-AGCCTGC-GGGATTT
25919721 AAGCCCGGATA
64 AA-CCCGGATA
25919732 CACATCAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
79 2 0.03
80 24 0.39
81 10 0.16
82 26 0.42
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (82 bp):
CCAGCACAAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACTAAGCCTGCGGGATTTAA
CCCGGATATAATACCAG
Found at i:25923046 original size:99 final size:96
Alignment explanation
Indices: 25922870--25923048 Score: 245
Period size: 96 Copynumber: 1.8 Consensus size: 96
25922860 GTATAGTGTC
* * *
25922870 GATGCCATGTCCCAGACATGTTCTTACACTGGCTCATCCATCAAGTCGATGCCAAGTCCCAGACA
1 GATGCCATGTCCAAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCAAGTCCCAGACA
25922935 TGGTCTTACACTGACTATTGAAATTGAGGCT
66 TGGTCTTACACTGACTATTGAAATTGAGGCT
* * *
25922966 GATGCCATGTCCAAGACATGGTCTTACACTAGCTC-TCACAT-ATCCGTGCCGGTGCCATGTCCC
1 GATGCCATGTCCAAGACATGGTCTTACACTAGCTCATC-CATCA--AGT--CGATGCCAAGTCCC
25923029 AGACATGGTCTTACACTGAC
61 AGACATGGTCTTACACTGAC
25923049 ATATCTCGTA
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
95 3 0.04
96 35 0.49
97 2 0.03
99 32 0.44
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (96 bp):
GATGCCATGTCCAAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCAAGTCCCAGACA
TGGTCTTACACTGACTATTGAAATTGAGGCT
Found at i:25923066 original size:96 final size:96
Alignment explanation
Indices: 25922869--25923135 Score: 234
Period size: 96 Copynumber: 2.8 Consensus size: 96
25922859 GGTATAGTGT
* *
25922869 CGATGCCATGTCCCAGACATGTTCTTACACTGGCTCATCCATCAAGTCGATGCCAAGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCAAGTCCCAGAC
*
25922934 ATGGTCTTACACTGACTATTGAAATTGAGGC
66 ATGGTCTTACACTGACTATTGAAATCGAGGC
* * * * *
25922965 TGATGCCATGTCCAAGACATGGTCTTACACTAGCTC-TCACAT-ATCCGTGCCGGTGCCATGTCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-CATCA--AGT--CGATGCCAAGTCC
**
25923028 CAGACATGGTCTTACACTGAC-A-T-ATCTCGTA-GC
61 CAGACATGGTCTTACACTGACTATTGAAATCG-AGGC
* * * * *
25923061 CGATG-CATGTCCCAGATAT-GTCTTACACTGGCTTACAT-C-TCGAGGTCGATG-CATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC-T-CATCCATC-AAGTCGATGCCAAGTCCCA
25923121 GACAT-GTCTTACACT
63 GACATGGTCTTACACT
25923136 AGCTCTCGTC
Statistics
Matches: 143, Mismatches: 17, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
90 10 0.07
91 13 0.09
92 4 0.03
94 15 0.10
95 17 0.12
96 46 0.32
97 5 0.03
98 1 0.01
99 32 0.22
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCAAGTCCCAGAC
ATGGTCTTACACTGACTATTGAAATCGAGGC
Found at i:25923111 original size:46 final size:46
Alignment explanation
Indices: 25922867--25923187 Score: 185
Period size: 46 Copynumber: 6.8 Consensus size: 46
25922857 AGGGTATAGT
*
25922867 GTCGATGCCATGTCCCAGACAT-GTTCTTACACTGGC-T-CATCCATCAA
1 GTCGATG-CATGTCCCAGACATAG-TCTTACACTGGCTTACAT-C-TCGA
* * * *
25922914 GTCGATGCCAAGTCCCAGACATGGTCTTACACTGACTATTGAAAT-T-GA
1 GTCGATG-CATGTCCCAGACATAGTCTTACACTGGC--TT-ACATCTCGA
* * * * * *
25922962 GGCTGATGCCATGTCCAAGACATGGTCTTACACTAGCTCTCACATATCCGT
1 GTC-GATG-CATGTCCCAGACATAGTCTTACACTGGCT-T-ACATCT-CGA
* * * * *
25923013 GCCGGTGCCATGTCCCAGACATGGTCTTACACTGAC--ATATCTCGTA
1 GTCGATG-CATGTCCCAGACATAGTCTTACACTGGCTTACATCTCG-A
* *
25923059 GCCGATGCATGTCCCAGATAT-GTCTTACACTGGCTTACATCTCGA
1 GTCGATGCATGTCCCAGACATAGTCTTACACTGGCTTACATCTCGA
* * * *
25923104 GGTCGATGCATGTTCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAA
1 -GTCGATGCATGTCCCAGACATAGTCTTACACTGGCT-TACATCTCGA
* *
25923150 TGTTGATGCCATGTCCCAGACATAGTCTTATACTGGCT
1 -GTCGATG-CATGTCCCAGACATAGTCTTACACTGGCT
25923188 CTCATAATGT
Statistics
Matches: 221, Mismatches: 35, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.05
45 16 0.07
46 60 0.27
47 47 0.21
48 20 0.09
49 31 0.14
50 30 0.14
51 3 0.01
52 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
GTCGATGCATGTCCCAGACATAGTCTTACACTGGCTTACATCTCGA
Found at i:25924531 original size:39 final size:39
Alignment explanation
Indices: 25924450--25924604 Score: 256
Period size: 39 Copynumber: 3.9 Consensus size: 39
25924440 TATGGTAACC
* *
25924450 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
25924490 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
25924529 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
25924568 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
25924605 TTTGCAAATT
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 90 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:25932517 original size:38 final size:39
Alignment explanation
Indices: 25932420--25932579 Score: 259
Period size: 39 Copynumber: 4.1 Consensus size: 39
25932410 TATGGTAACC
* *
25932420 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
25932460 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
25932499 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
25932537 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
25932576 CGCA
1 CGCA
25932580 ATTCATACAC
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.32
39 59 0.53
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:25932579 original size:77 final size:78
Alignment explanation
Indices: 25932428--25932579 Score: 261
Period size: 77 Copynumber: 2.0 Consensus size: 78
25932418 CCCGCACAAA
25932428 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
* *
25932493 ATAGCTCGCACAT
66 ACAACTCGCACAT
*
25932506 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
*
25932570 ACAATTCGCA
66 ACAACTCGCA
25932580 ATTCATACAC
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
77 60 0.86
78 10 0.14
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.24
Consensus pattern (78 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ACAACTCGCACAT
Found at i:25948619 original size:40 final size:40
Alignment explanation
Indices: 25948564--25948737 Score: 246
Period size: 40 Copynumber: 4.4 Consensus size: 40
25948554 CGAATGATAA
* *
25948564 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
25948604 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
25948644 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
25948684 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
25948724 -CTGGCTAAATCCCG
1 CCGGGCTAAGTCCCG
25948738 GAGGTACTTG
Statistics
Matches: 123, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
39 14 0.11
40 108 0.88
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:25950965 original size:47 final size:47
Alignment explanation
Indices: 25950911--25951038 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 47
25950901 CGAGTAAATG
* * * *
25950911 CCTTGATTTCGCTACGGGCCATGGTATAGGTATTTTGAGAGGAGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGTTA
* * * *
25950958 CCTTGATTTGGCCACGGGCCATGGTATATGTACTCTGGGATAAGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGTTA
* *
25951005 CCTTGATTTGGCTACGAGCCATGATATAGGTACT
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACT
25951039 TATTGATTGT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (47 bp):
CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGTTA
Found at i:25952960 original size:15 final size:15
Alignment explanation
Indices: 25952940--25952971 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
25952930 AATTATGAAA
25952940 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
25952955 GATATGTTTTGTATT
1 GATATGTTTTGGATT
25952970 GA
1 GA
25952972 AATTTTTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:25953664 original size:41 final size:43
Alignment explanation
Indices: 25953600--25953710 Score: 140
Period size: 41 Copynumber: 2.6 Consensus size: 43
25953590 ATCAATGTGC
* *
25953600 GATTACATGTAAGACCATGTCTGGGACA-TCAGCATCG-TATTT
1 GATTACATGTAAGACCCTGTCTGGGACAGT-AGCATCGATATGT
* *
25953642 GATT-CGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGT
1 GATTACATGTAAGACCCTGTCTGGGACAGTAGCATCGATATGT
25953684 GATTACATGTAAGACCAC-GTCTGGGAC
1 GATTACATGTAAGACC-CTGTCTGGGAC
25953711 GTTGGCATTG
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
41 27 0.45
42 13 0.22
43 19 0.32
44 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (43 bp):
GATTACATGTAAGACCCTGTCTGGGACAGTAGCATCGATATGT
Found at i:25953709 original size:43 final size:43
Alignment explanation
Indices: 25953562--25953718 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
25953552 TATGTGTTCT
* * * * * *
25953562 CATGTAAGACCATGTCTGAGACGTTGGAATCAATGTGCGATTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
* * ** *
25953605 CATGTAAGACCATGTCTGGGACATCAGCATCG-TATTTGATT-
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
*
25953646 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTA
25953689 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
25953719 TGTACGATAT
Statistics
Matches: 92, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
41 25 0.27
42 15 0.16
43 51 0.55
44 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
Found at i:25955298 original size:2 final size:2
Alignment explanation
Indices: 25955291--25955322 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
25955281 TTTGTTATGT
25955291 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25955323 AATACATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:25955957 original size:43 final size:42
Alignment explanation
Indices: 25955837--25955992 Score: 131
Period size: 43 Copynumber: 3.6 Consensus size: 42
25955827 ATCTCGTACA
* * *
25955837 ATGCCAGTGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACCT-TAAATCAAATA-AG
** * *
25955880 ATAACACTGTCCCAGACAG-GGTCTTACAC-GAAATCAAATAAG
1 ATGCCAATGTCCCAGAC-GTGGTCTTAC-CTTAAATCAAATAAG
*
25955922 ATGCCAATGTCCCAGACGTGGTCTTACGCTTAAATCATAAGTCA-
1 ATGCCAATGTCCCAGACGTGGTCTTAC-CTTAAATCA-AA-TAAG
* *
25955966 ATGCCAACGTCCCAGATGTGGTCTTAC
1 ATGCCAATGTCCCAGACGTGGTCTTAC
25955993 AGGATAACAC
Statistics
Matches: 92, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 24 0.26
43 37 0.40
44 28 0.30
45 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACCTTAAATCAAATAAG
Found at i:25963814 original size:47 final size:48
Alignment explanation
Indices: 25963743--25963871 Score: 160
Period size: 47 Copynumber: 2.8 Consensus size: 48
25963733 GGTAAGGTGC
* *
25963743 CGATGCCATGTCCTAGACACGGTCTTACACTAG-T-TCAT-ATCTCATGT
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATCT--GGT
* *
25963790 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGT
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATCTGGT
*
25963838 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC
1 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTC
25963872 ACACACGAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
46 14 0.19
47 44 0.60
48 8 0.11
49 4 0.05
50 3 0.04
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATCTGGT
Found at i:25966298 original size:43 final size:42
Alignment explanation
Indices: 25966151--25966305 Score: 136
Period size: 42 Copynumber: 3.7 Consensus size: 42
25966141 ATCTCGTAGA
* * * * *
25966151 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATC-
1 ATGCCAATGTCCTAGACGTGGTCTTACACGAAATCAAATA-CG
*
25966193 ATGCCACTGTCCTAGACAG-GGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCTAGAC-GTGGTCTTACACGAAATCAAATACG
* * * * * *
25966235 ATGCCAACGTCCCAGGCGTGGTCTTACACTAGATTATAAGT-CG
1 ATGCCAATGTCCTAGACGTGGTCTTACACGAAATCA-AA-TACG
*
25966278 ATGCCAATGTCCTAGACGTGGTATTACA
1 ATGCCAATGTCCTAGACGTGGTCTTACA
25966306 TGATAACACA
Statistics
Matches: 91, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
42 59 0.65
43 29 0.32
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACGTGGTCTTACACGAAATCAAATACG
Found at i:25969869 original size:46 final size:47
Alignment explanation
Indices: 25969733--25969900 Score: 143
Period size: 46 Copynumber: 3.6 Consensus size: 47
25969723 CACATTTTGA
* * *
25969733 AAGCCAGTGTAAGACCATGTCTGGGTCATGGCATCAAC-ATTGAGACG-
1 AAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCAGCTA-CGAGACGT
* * ** *
25969780 AGTGCTAGTGTAAGA-CATGTCTGGGACATGTTTCGGCCT-CGAGACGT
1 A-AGCCAGTGTAAGACCATGTCTGGGACATGCATCAG-CTACGAGACGT
* *
25969827 AAGCCAGTGTAAGA-CATGTGTGGGACATGCATCAGCTACGAGATGT
1 AAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCTACGAGACGT
* *
25969873 --GTCAGAGTAAGACCATGTCTGGGACATG
1 AAGCCAGTGTAAGACCATGTCTGGGACATG
25969901 GAAATGGCAC
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
44 10 0.10
45 16 0.16
46 44 0.45
47 16 0.16
48 11 0.11
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AAGCCAGTGTAAGACCATGTCTGGGACATGCATCAGCTACGAGACGT
Found at i:25973946 original size:40 final size:40
Alignment explanation
Indices: 25973862--25973937 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
25973852 GTCAAGATAA
* *
25973862 CGTTTTATAATGGAAGCTTTCTAAATCAATTGCATTATAT
1 CGTTTTATAACGGAAGCTTTCTAAATCAATTGCAGTATAT
*
25973902 CGTTTTATAGCGGAAGCTTTCTAAATCAATTGCAGT
1 CGTTTTATAACGGAAGCTTTCTAAATCAATTGCAGT
25973938 CTTGCGTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.39
Consensus pattern (40 bp):
CGTTTTATAACGGAAGCTTTCTAAATCAATTGCAGTATAT
Found at i:25974715 original size:27 final size:27
Alignment explanation
Indices: 25974650--25974706 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
25974640 CATAATCATG
*
25974650 CATCTCATA-GGGCATAACAGTCATTT
1 CATCACATAGGGGCATAACAGTCATTT
* *
25974676 TATCACATAGGGGCATAATAGTCATTT
1 CATCACATAGGGGCATAACAGTCATTT
25974703 CATC
1 CATC
25974707 GGTTAGGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.27
27 19 0.73
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (27 bp):
CATCACATAGGGGCATAACAGTCATTT
Found at i:25978288 original size:43 final size:42
Alignment explanation
Indices: 25978142--25978288 Score: 123
Period size: 43 Copynumber: 3.4 Consensus size: 42
25978132 TATCCCAGAT
* * * * * * *
25978142 ATGGTCTTACATGTTATCACATATTGATACCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCATA-AATGATGCCAATGTCCCAAAC
* * * * *
25978185 AGGGTCTTCCACGAAATCAATAAACGATGCCAATGCCCCAAAC
1 ATGGTCTTACACGTAATC-ATAAATGATGCCAATGTCCCAAAC
* * *
25978228 ATGGTCTTACACATAATCGATAAATGATGCCAGTGTCCCATAC
1 ATGGTCTTACACGTAATC-ATAAATGATGCCAATGTCCCAAAC
*
25978271 ATGGTCTTACATGTAATC
1 ATGGTCTTACACGTAATC
25978289 TCATCTTGGT
Statistics
Matches: 80, Mismatches: 23, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
43 78 0.98
44 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCATAAATGATGCCAATGTCCCAAAC
Found at i:25980594 original size:42 final size:42
Alignment explanation
Indices: 25980501--25980599 Score: 108
Period size: 42 Copynumber: 2.4 Consensus size: 42
25980491 ATGTGTGATT
* * * *** *
25980501 TCGTGTAAGACCATATCTGGGATATGGCATCGATATTTGATT
1 TCGTGTAAGACCATATCTAGAATATGGCATCAATACAAGATA
* * *
25980543 TCATTTAAGAACATATCTAGAATATGGCATCAATACAAGATA
1 TCGTGTAAGACCATATCTAGAATATGGCATCAATACAAGATA
25980585 TCGTGTAAGACCATA
1 TCGTGTAAGACCATA
25980600 GCTGGGCTAT
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATATCTAGAATATGGCATCAATACAAGATA
Found at i:25983419 original size:43 final size:43
Alignment explanation
Indices: 25983358--25983443 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
25983348 TTCAGACTTT
25983358 TTAATTCCTAGTGACATGTAACTTGTATCCTAATCTATTCCTA
1 TTAATTCCTAGTGACATGTAACTTGTATCCTAATCTATTCCTA
25983401 TTAATTCCTAGTGACATGTAACTTGTATCCTAATCTATTCCTA
1 TTAATTCCTAGTGACATGTAACTTGTATCCTAATCTATTCCTA
25983444 AGGTTCAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (43 bp):
TTAATTCCTAGTGACATGTAACTTGTATCCTAATCTATTCCTA
Found at i:25989440 original size:39 final size:39
Alignment explanation
Indices: 25989386--25989499 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 39
25989376 GAATGTTCGA
* *
25989386 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACT
*
25989425 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACT
* * *
25989464 ATGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
25989500 GTTACCATAA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 51 0.75
40 17 0.25
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACT
Found at i:25989525 original size:39 final size:40
Alignment explanation
Indices: 25989393--25989528 Score: 125
Period size: 39 Copynumber: 3.5 Consensus size: 40
25989383 CGAGTGATAT
* ** *** *
25989393 CCGGGCTAAG-CCCGAAGGCAATTGTGTGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTACCATAA
** *
25989432 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTACCATAA
* * *
25989471 CCGGGTTAAGTCCCGAAGGCATTTGTGCG-GTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTACCATAA
*
25989510 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
25989529 TGTTTTGAAC
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 67 0.80
40 17 0.20
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTACCATAA
Found at i:25997490 original size:39 final size:39
Alignment explanation
Indices: 25997436--25997549 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
25997426 GAATGTTCGA
*
25997436 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACT
*
25997475 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACT
* * *
25997514 ATGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
25997550 GGTTACCATA
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 52 0.75
40 17 0.25
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACT
Found at i:25997565 original size:40 final size:40
Alignment explanation
Indices: 25997443--25997579 Score: 134
Period size: 39 Copynumber: 3.5 Consensus size: 40
25997433 CGAGTGATAT
** *** *
25997443 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTACCATAA
** *
25997482 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTACCATAA
* * * *
25997521 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTACCATAA
*
25997561 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
25997580 TGTTTTGAAC
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 45 0.53
40 40 0.47
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTACCATAA
Found at i:26000755 original size:45 final size:45
Alignment explanation
Indices: 26000704--26000790 Score: 140
Period size: 45 Copynumber: 1.9 Consensus size: 45
26000694 TATATAATAT
26000704 GAACTCATTGAGTTGTGGTCTGAGTTCA-TGATATATGTGACATCG
1 GAACTCATTGAGTTGTGGTCTGAGTT-AGTGATATATGTGACATCG
* *
26000749 GAACTCATTGAGTTGTGGTTTGAGTTAGTGATGTATGTGACA
1 GAACTCATTGAGTTGTGGTCTGAGTTAGTGATATATGTGACA
26000791 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 1 0.03
45 38 0.97
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.37
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTAGTGATATATGTGACATCG
Found at i:26005680 original size:45 final size:45
Alignment explanation
Indices: 26005614--26005706 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
26005604 TATGAGCTTG
* *
26005614 TGACCGATTACCATCCGGGTAACGCGAGTGTGGTCGCTGACGCCT
1 TGACCGATTACCATCCAGGTAACGCGAGTGTGGTCGATGACGCCT
26005659 TGACCGATTACCATCCAGGTAACGCGAGTGTGGTCGATGACGCCT
1 TGACCGATTACCATCCAGGTAACGCGAGTGTGGTCGATGACGCCT
26005704 TGA
1 TGA
26005707 GTAGGAAGTC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (45 bp):
TGACCGATTACCATCCAGGTAACGCGAGTGTGGTCGATGACGCCT
Found at i:26008251 original size:29 final size:29
Alignment explanation
Indices: 26008161--26008320 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
26008151 ACTCGATTTC
* * **
26008161 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
26008190 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
26008218 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
26008248 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
26008277 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
26008306 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
26008321 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:26016283 original size:29 final size:29
Alignment explanation
Indices: 26016193--26016352 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
26016183 ACTCGATTTC
* * **
26016193 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
26016222 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
26016250 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
26016280 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
26016309 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
26016338 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
26016353 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:26030108 original size:45 final size:45
Alignment explanation
Indices: 26030056--26030142 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
26030046 TATGTAATCT
*
26030056 AAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGTGACATCC
1 AAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
* *
26030101 AAACTCATTGAGTTGTGGTCTGAGTTCGTGATTTATGTGACA
1 AAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACA
26030143 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (45 bp):
AAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
Found at i:26033255 original size:40 final size:40
Alignment explanation
Indices: 26033200--26033409 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
26033190 AACATTGGAA
26033200 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26033240 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26033280 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
26033320 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
26033359 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
26033400 CTATATCCGG
1 ATATATCCGG
26033410 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:26041388 original size:40 final size:40
Alignment explanation
Indices: 26041331--26041539 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
26041321 AACATTGGAA
26041331 ATATATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26041370 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
26041410 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
26041450 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
26041489 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
26041530 CTATATCCGG
1 ATATATCCGG
26041540 TTAAATCCCG
Statistics
Matches: 150, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 10 0.07
40 140 0.93
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:26044810 original size:20 final size:20
Alignment explanation
Indices: 26044785--26044827 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
26044775 TAATGGGCAA
26044785 CCTATAACTGGGGCATAAGC
1 CCTATAACTGGGGCATAAGC
26044805 CCTATAACTGGGGCATAAGC
1 CCTATAACTGGGGCATAAGC
26044825 CCT
1 CCT
26044828 TTTTCACTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (20 bp):
CCTATAACTGGGGCATAAGC
Found at i:26044913 original size:19 final size:20
Alignment explanation
Indices: 26044883--26044938 Score: 96
Period size: 19 Copynumber: 2.9 Consensus size: 20
26044873 TGATTACCTC
26044883 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
26044903 TGTGC-TATCATACATTTCA
1 TGTGCATATCATACATATCA
26044922 TGTGCATATCATACATA
1 TGTGCATATCATACATA
26044939 CCATATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:26045006 original size:25 final size:25
Alignment explanation
Indices: 26044978--26045025 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26044968 ATACATAAAC
* * *
26044978 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
26045003 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
26045026 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:26050514 original size:25 final size:25
Alignment explanation
Indices: 26050485--26050532 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26050475 TTATAATATG
* * *
26050485 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26050510 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26050533 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26050601 original size:20 final size:20
Alignment explanation
Indices: 26050576--26050634 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
26050566 TAAATATGGT
26050576 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
26050596 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
26050616 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
26050635 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:26050715 original size:23 final size:24
Alignment explanation
Indices: 26050685--26050779 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
26050675 GAGGAAGTGA
26050685 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
26050708 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26050732 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
26050756 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26050780 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26050753 original size:47 final size:49
Alignment explanation
Indices: 26050686--26050779 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
26050676 AGGAAGTGAA
*
26050686 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
26050733 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
26050780 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:26051022 original size:38 final size:38
Alignment explanation
Indices: 26050971--26051133 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
26050961 CGTTTACAGT
26050971 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
26051009 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
26051040 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
26051078 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
26051116 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
26051134 GCATGATTGA
Statistics
Matches: 112, Mismatches: 5, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 68 0.61
39 13 0.12
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:26051033 original size:31 final size:31
Alignment explanation
Indices: 26050995--26051110 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
26050985 AGTATTATGA
26050995 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
26051026 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
26051062 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
26051095 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
26051111 TACGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:26051047 original size:69 final size:69
Alignment explanation
Indices: 26050971--26051110 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
26050961 CGTTTACAGT
26050971 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
26051036 ATGA
66 ATGA
*
26051040 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
26051105 ATGA
66 ATGA
26051109 AA
1 AA
26051111 TACGAAAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:26058870 original size:25 final size:25
Alignment explanation
Indices: 26058841--26058888 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26058831 TTATAATATG
* * *
26058841 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26058866 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26058889 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26058957 original size:20 final size:20
Alignment explanation
Indices: 26058932--26058990 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
26058922 TAAATATGGT
26058932 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
26058952 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
26058972 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
26058991 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:26059071 original size:23 final size:24
Alignment explanation
Indices: 26059041--26059135 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
26059031 GAGGAAGTGA
26059041 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
26059064 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26059088 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
26059112 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26059136 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26059109 original size:47 final size:49
Alignment explanation
Indices: 26059042--26059135 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
26059032 AGGAAGTGAA
*
26059042 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
26059089 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
26059136 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:26059378 original size:38 final size:38
Alignment explanation
Indices: 26059327--26059488 Score: 225
Period size: 38 Copynumber: 4.4 Consensus size: 38
26059317 CGTTTACAGT
26059327 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
26059365 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
26059396 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
26059434 AAAGGCTTCGGCCCAGTATTATGAAATATGAATAC--GA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAA-ACATGA
*
26059471 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
26059489 GCATGATTGA
Statistics
Matches: 112, Mismatches: 3, Indels: 18
0.84 0.02 0.14
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
37 5 0.04
38 74 0.66
39 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:26059389 original size:31 final size:31
Alignment explanation
Indices: 26059351--26059465 Score: 140
Period size: 31 Copynumber: 3.5 Consensus size: 31
26059341 AGTATTATGA
26059351 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
26059382 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
26059418 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
26059451 ATTATGAAATATGAA
1 AATATGAAACATGAA
26059466 TACGAAAAGG
Statistics
Matches: 73, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 42 0.58
33 1 0.01
36 1 0.01
38 29 0.40
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:26059403 original size:69 final size:69
Alignment explanation
Indices: 26059327--26059465 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
26059317 CGTTTACAGT
26059327 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
26059392 ATGA
66 ATGA
*
26059396 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
26059461 ATGA
66 ATGA
26059465 A
1 A
26059466 TACGAAAAGG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:26061341 original size:30 final size:30
Alignment explanation
Indices: 26061306--26061366 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
26061296 TTTTAATACG
26061306 AACTTTGGGAAAATTACACTTTTGCCCCTA
1 AACTTTGGGAAAATTACACTTTTGCCCCTA
* * *
26061336 AACTTTTGTATAATTACACTTTTGCCCCTA
1 AACTTTGGGAAAATTACACTTTTGCCCCTA
26061366 A
1 A
26061367 GCTCGGGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AACTTTGGGAAAATTACACTTTTGCCCCTA
Found at i:26064868 original size:48 final size:48
Alignment explanation
Indices: 26064792--26065051 Score: 220
Period size: 48 Copynumber: 5.7 Consensus size: 48
26064782 CGGAATGGCA
* *
26064792 TGGTGCTAAGTGGATATACCATGATTACACATATCGATAAATGTAACG
1 TGGTGCTAAGTGGATATACCACGATTACACATATTGATAAATGTAACG
* * * * **
26064840 TGGTGCTAAATGGATATGCCACGGTTACATATATTGATTCAT-TAACG
1 TGGTGCTAAGTGGATATACCACGATTACACATATTGATAAATGTAACG
** *
26064887 TGGTGCTAAGTGGATATACCACG---------GGT-ATACATGTAACG
1 TGGTGCTAAGTGGATATACCACGATTACACATATTGATAAATGTAACG
* * * *
26064925 TGGTGCTAAATGGATATGCCACTATTACACATATTGATAAATGTAATG
1 TGGTGCTAAGTGGATATACCACGATTACACATATTGATAAATGTAACG
* * ** ** *
26064973 TGGTGCTAAGTGGATATGCCACTATTACATTTATTGATTCAT-TAATG
1 TGGTGCTAAGTGGATATACCACGATTACACATATTGATAAATGTAACG
* *
26065020 TGGTGCTAAGTGGATATACCACGGTTAAACAT
1 TGGTGCTAAGTGGATATACCACGATTACACAT
26065052 GTAACATGGT
Statistics
Matches: 170, Mismatches: 31, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
37 5 0.03
38 26 0.15
47 58 0.34
48 81 0.48
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (48 bp):
TGGTGCTAAGTGGATATACCACGATTACACATATTGATAAATGTAACG
Found at i:26064966 original size:133 final size:134
Alignment explanation
Indices: 26064790--26065079 Score: 458
Period size: 133 Copynumber: 2.2 Consensus size: 134
26064780 TTCGGAATGG
*
26064790 CATGGTGCTAAGTGGATATACCA-TGATTACACATATCGATAAATGTAACGTGGTGCTAAATGGA
1 CATGGTGCTAAGTGGATATGCCACTGATTACACATATCGATAAATGTAACGTGGTGCTAAATGGA
* *
26064854 TATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGGTATACAT
66 TATGCCACGATTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGGTAAACAT
26064919 GTAA
131 GTAA
* * * * *
26064923 CGTGGTGCTAAATGGATATGCCACT-ATTACACATATTGATAAATGTAATGTGGTGCTAAGTGGA
1 CATGGTGCTAAGTGGATATGCCACTGATTACACATATCGATAAATGTAACGTGGTGCTAAATGGA
* * * *
26064987 TATGCCACTATTACATTTATTGATTCATTAATGTGGTGCTAAGTGGATATACCACGGTTAAACAT
66 TATGCCACGATTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGGTAAACAT
26065052 GTAA
131 GTAA
26065056 CATGGTGCTAAGTGGATATGCCAC
1 CATGGTGCTAAGTGGATATGCCAC
26065080 AGTCATACAT
Statistics
Matches: 142, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
133 141 0.99
134 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31
Consensus pattern (134 bp):
CATGGTGCTAAGTGGATATGCCACTGATTACACATATCGATAAATGTAACGTGGTGCTAAATGGA
TATGCCACGATTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGGTAAACAT
GTAA
Found at i:26065071 original size:38 final size:38
Alignment explanation
Indices: 26065020--26065093 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
26065010 TTCATTAATG
* *
26065020 TGGTGCTAAGTGGATATACCACGGTTAAACATGTAACA
1 TGGTGCTAAGTGGATATACCACAGTCAAACATGTAACA
* *
26065058 TGGTGCTAAGTGGATATGCCACAGTCATACATGTAA
1 TGGTGCTAAGTGGATATACCACAGTCAAACATGTAA
26065094 TTTGAAAAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (38 bp):
TGGTGCTAAGTGGATATACCACAGTCAAACATGTAACA
Found at i:26066950 original size:20 final size:21
Alignment explanation
Indices: 26066924--26066977 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
26066914 CTGAAGTGAA
26066924 TTATATGCTTATGAAA-A-TG
1 TTATATGCTTATGAAATAGTG
* *
26066943 TTACTATGATGATGAAATAGTG
1 TTA-TATGCTTATGAAATAGTG
*
26066965 TTATATGCATATG
1 TTATATGCTTATG
26066978 CATAAGAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 3 0.11
20 11 0.41
21 8 0.30
22 5 0.19
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.41
Consensus pattern (21 bp):
TTATATGCTTATGAAATAGTG
Found at i:26067843 original size:15 final size:15
Alignment explanation
Indices: 26067823--26067864 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
26067813 ACTATAAATG
26067823 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
26067838 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
*
26067853 GGATTTGCTTAT
1 GGATTTCCTTAT
26067865 TCTGGGCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:26070558 original size:47 final size:48
Alignment explanation
Indices: 26070433--26070658 Score: 312
Period size: 48 Copynumber: 4.8 Consensus size: 48
26070423 AGAATGGAAA
26070433 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
* * *
26070481 AACGTGGTGCTAAGTGGATATGCCACGATTACATATATTGATTCAT-T
1 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
* ** *
26070528 AACGTGGTGTTAAGTGGATATATAATGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
* * * *
26070576 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT-T
1 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
* * *
26070623 AATGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 AACGTGGTGCTAAGTGGATATACCACGATTACACAT
26070659 GTAACGTGGT
Statistics
Matches: 155, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
47 73 0.47
48 82 0.53
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (48 bp):
AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
Found at i:26070596 original size:95 final size:95
Alignment explanation
Indices: 26070433--26070645 Score: 372
Period size: 95 Copynumber: 2.2 Consensus size: 95
26070423 AGAATGGAAA
*
26070433 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACGTGGTGCTAAGTGG
1 AACGTGGTGCTAAGTGGATATACAACGATTACACATATTGATACATGTAACGTGGTGCTAAGTGG
26070498 ATATGCCACGATTACATATATTGATTCATT
66 ATATGCCACGATTACATATATTGATTCATT
* * *
26070528 AACGTGGTGTTAAGTGGATATATAATGATTACACATATTGATACATGTAACGTGGTGCTAAGTGG
1 AACGTGGTGCTAAGTGGATATACAACGATTACACATATTGATACATGTAACGTGGTGCTAAGTGG
*
26070593 ATATGCCACGGTTACATATATTGATTCATT
66 ATATGCCACGATTACATATATTGATTCATT
*
26070623 AATGTGGTGCTAAGTGGATATAC
1 AACGTGGTGCTAAGTGGATATAC
26070646 CACGGTTAAA
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 110 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (95 bp):
AACGTGGTGCTAAGTGGATATACAACGATTACACATATTGATACATGTAACGTGGTGCTAAGTGG
ATATGCCACGATTACATATATTGATTCATT
Found at i:26070677 original size:38 final size:38
Alignment explanation
Indices: 26070626--26070698 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
26070616 ATTCATTAAT
26070626 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
* ** *
26070664 GTGGTGCTGAGTGGATATGTCACGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGT
26070699 TAATTTGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
Found at i:26075711 original size:46 final size:47
Alignment explanation
Indices: 26075565--26075732 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
26075555 GGTAAGGTAC
* * * *
26075565 CGATGCCATGTCCCAGACATGGTCTTGCACTGGCTCATATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCGAGG
* * * *
26075612 CGATGCCATGTTCCAGACATGGTCTTACACTGAC-TATCATCTTGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTAT-ATCTCG-AGG
* *
26075660 CGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTATGTCTCGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCGAGG
26075705 CTGATG-CATGTCCCAGACAT-GTCTTACA
1 C-GATGCCATGTCCCAGACATGGTCTTACA
26075733 GTAACACTCG
Statistics
Matches: 103, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
45 3 0.03
46 43 0.42
47 50 0.49
48 7 0.07
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATATCTCGAGG
Found at i:26075757 original size:46 final size:48
Alignment explanation
Indices: 26075562--26075779 Score: 168
Period size: 47 Copynumber: 4.6 Consensus size: 48
26075552 TGGGGTAAGG
* * * * *
26075562 TACCGATGCCATGTCCCAGACATGGTCTTGCACTGGCTCAT-ATC-TCA
1 TACCGATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCGTCTTGA
* * * *
26075609 -AGTCGATGCCATGTTCCAGACATGGTCTTACACTGACTATCATCTTG-
1 TA-CCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCGTCTTGA
* *
26075656 TAGCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTAT-GTCTCGA
1 TA-CCGATGCCATGTCCCAAACATGGTCTTACACTGAC-TATCGTCTTGA
** * * * *
26075703 GGCTGATG-CATGTCCCAGACAT-GTCTTACAGTAAC-ACTCGTCTTGA
1 TACCGATGCCATGTCCCAAACATGGTCTTACACTGACTA-TCGTCTTGA
26075749 TACCGATGCCATGTCCCAAACATGGTCTTAC
1 TACCGATGCCATGTCCCAAACATGGTCTTAC
26075780 TCTTGCTCTC
Statistics
Matches: 138, Mismatches: 23, Indels: 19
0.77 0.13 0.11
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 58 0.42
47 63 0.46
48 15 0.11
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
TACCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCGTCTTGA
Found at i:26075762 original size:93 final size:94
Alignment explanation
Indices: 26075561--26075779 Score: 277
Period size: 93 Copynumber: 2.3 Consensus size: 94
26075551 GTGGGGTAAG
* * * *
26075561 GTACCGATGCCATGTCCCAGACATGGTCTTGCACTGGCTCATATCTCAAGTCGATGCCATGTTCC
1 GTACCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGGCGATGCCATGTCCC
*
26075626 AGACATGGTCTTACACTGACTATCATCTT
66 AGACATGGTCTTACACTAACTATCATCTT
* * *
26075655 GTAGCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTATGTCTCGAGGCTGATG-CATGTC
1 GTA-CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGGC-GATGCCATGTC
* *
26075717 CCAGACAT-GTCTTACAGTAAC-ACTCGTCTT
64 CCAGACATGGTCTTACACTAACTA-TCATCTT
26075747 GATACCGATGCCATGTCCCAAACATGGTCTTAC
1 G-TACCGATGCCATGTCCCAAACATGGTCTTAC
26075780 TCTTGCTCTC
Statistics
Matches: 109, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
91 1 0.01
92 24 0.22
93 51 0.47
94 27 0.25
95 6 0.06
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (94 bp):
GTACCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGGCGATGCCATGTCCC
AGACATGGTCTTACACTAACTATCATCTT
Found at i:26075817 original size:94 final size:92
Alignment explanation
Indices: 26075564--26075829 Score: 238
Period size: 94 Copynumber: 2.8 Consensus size: 92
26075554 GGGTAAGGTA
* * * * * * *
26075564 CCGATGCCATGTCCCAGACATGGTCTTGCACTGGCTCAT--ATCTCAAGTCGATGCCATGTTCCA
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTATGAATC-GAGGCCGATG-CATGTCCCA
*
26075627 GACATGGTCTTACACTGACTATCATCTTGTAG
62 GACAT-GTCTTACACTAACTATCATCTTGTAG
** *
26075659 CCGATGCATGTCCCAAACATGTCTTACACTGGCTTATGTCTCGAGGCTGATGCATGTCCCAGACA
1 CCGATGCATGTCCCAAACATGTCTTACACTGGCTTATGAATCGAGGCCGATGCATGTCCCAGACA
* *
26075724 TGTCTTACAGTAAC-ACTCGTCTTGATA-
66 TGTCTTACACTAACTA-TCATCTTG-TAG
* * *
26075751 CCGATGCCATGTCCCAAACATGGTCTTACTCTTGCTCTCAT-AAT-GTGGCCGATGCATGTCCCA
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-T-ATGAATCGAGGCCGATGCATGTCCCA
*
26075814 GACACGTCTTACACTA
62 GACATGTCTTACACTA
26075830 GCTCACAACA
Statistics
Matches: 143, Mismatches: 20, Indels: 17
0.79 0.11 0.09
Matches are distributed among these distances:
91 1 0.01
92 24 0.17
93 44 0.31
94 62 0.43
95 10 0.07
96 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
CCGATGCATGTCCCAAACATGTCTTACACTGGCTTATGAATCGAGGCCGATGCATGTCCCAGACA
TGTCTTACACTAACTATCATCTTGTAG
Found at i:26077124 original size:31 final size:31
Alignment explanation
Indices: 26077086--26077158 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
26077076 GGTTACTAGA
*
26077086 CCGAAGCCTTTTCATACATC-ATATCACTGGG
1 CCGAAGCCTTTTCATAAATCAAT-TCACTGGG
26077117 CCGAAGCCTTTTCATAAATCAATTCACTGGG
1 CCGAAGCCTTTTCATAAATCAATTCACTGGG
26077148 CCGAAGCCTTT
1 CCGAAGCCTTT
26077159 ACTGTAAACG
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
31 38 0.95
32 2 0.05
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (31 bp):
CCGAAGCCTTTTCATAAATCAATTCACTGGG
Found at i:26077229 original size:42 final size:42
Alignment explanation
Indices: 26077182--26077273 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
26077172 TGGCCCATAG
* * ** *
26077182 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACACGAAATACCAATGAATGTATGCAA
*
26077224 GCCCATTTCAATATCATACGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACACGAAATACCAATGAATGTATGCAA
26077266 GCCCATTT
1 GCCCATTT
26077274 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACACGAAATACCAATGAATGTATGCAA
Done.