Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 85 of 292
Found at i:26077464 original size:26 final size:26
Alignment explanation
Indices: 26077406--26077516 Score: 174
Period size: 26 Copynumber: 4.3 Consensus size: 26
26077396 CTGGAGGCCT
26077406 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
26077430 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
26077456 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
26077482 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
26077508 AGCCCTTTT
1 AGCCCTTTT
26077517 GCACTTCCTC
Statistics
Matches: 80, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.06
24 7 0.09
25 10 0.12
26 58 0.73
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:26077591 original size:20 final size:20
Alignment explanation
Indices: 26077566--26077652 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
26077556 TTATGAATAC
26077566 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
26077586 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
**
26077606 ATCATGTGCATTTTGTACAT
1 ATCATGTGCATTTCATACAT
* *
26077626 ATCTTGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
26077646 ATCATGT
1 ATCATGT
26077653 ATATCATATC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
20 57 0.97
21 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.41
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:26077716 original size:25 final size:25
Alignment explanation
Indices: 26077688--26077735 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26077678 ATAATTAAAC
* * *
26077688 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
26077713 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
26077736 CATACTACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:26078507 original size:27 final size:27
Alignment explanation
Indices: 26078477--26078582 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
26078467 GTAAATCTAC
26078477 AAATCAAAGGTATTTCT-GTAATTTTGT
1 AAATCAAAGGTATTT-TGGTAATTTTGT
* **
26078504 AAATCAAGGGTATTTTGGTAATTTTAC
1 AAATCAAAGGTATTTTGGTAATTTTGT
** * * ***
26078531 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAATCAAAGGTATTTTGGTAATTTTGT
* **
26078558 AAACCAGTGGTATTTTGGTAATTTT
1 AAATCAAAGGTATTTTGGTAATTTT
26078583 ACTAACTAGG
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.02
27 63 0.98
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAATCAAAGGTATTTTGGTAATTTTGT
Found at i:26078551 original size:81 final size:81
Alignment explanation
Indices: 26078456--26078614 Score: 180
Period size: 81 Copynumber: 2.0 Consensus size: 81
26078446 TCATCCTACA
* * * *
26078456 AGGGTGTTTTGGTAAATCT-ACAAATCAAAGGTATTTCT-GTAATTTT-GTAAATCAAGGGTATT
1 AGGGTATTTCGGT-AATCTCACAAACCAAAGGTATTT-TGGTAATTTTACTAAAT-AAGGGTATT
26078518 TTGGTAATTTTACAAATTG
63 TTGGTAATTTTACAAATTG
* ** * * *
26078537 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACTAACTAGGGGTGTTTTG
1 AGGGTATTTCGGTAATCTCACAAACCAAAGGTATTTTGGTAATTTTACTAAATAAGGGTATTTTG
26078602 GTAATTTTACAAA
66 GTAATTTTACAAA
26078615 CTAGGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
80 5 0.08
81 56 0.86
82 4 0.06
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGTATTTCGGTAATCTCACAAACCAAAGGTATTTTGGTAATTTTACTAAATAAGGGTATTTTG
GTAATTTTACAAATTG
Found at i:26078570 original size:54 final size:54
Alignment explanation
Indices: 26078511--26078667 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 54
26078501 TGTAAATCAA
*
26078511 GGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACCAG
* * * * * *
26078565 TGGTATTTTGGTAATTTTACTAACTAGGGGTGTTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAG
* ** *
26078619 GGGTATTGTGGTAATTTTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGGTAATTTCACAA
26078668 TCGAGGGTAA
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
54 81 0.94
55 5 0.06
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAG
Found at i:26078600 original size:27 final size:27
Alignment explanation
Indices: 26078511--26078637 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
26078501 TGTAAATCAA
*
26078511 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
26078537 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
26078565 TGGTATTTTGGTAATTTTACTAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
26078592 GGGTGTTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
26078619 GGGTATTGTGGTAATTTTA
1 GGGTATTTTGGTAATTTTA
26078638 TCCTACAGGG
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 84 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:26078647 original size:27 final size:27
Alignment explanation
Indices: 26078511--26078662 Score: 121
Period size: 27 Copynumber: 5.6 Consensus size: 27
26078501 TGTAAATCAA
* * *
26078511 GGGTATTTTGGTAATTTTA-CAAATTG
1 GGGTATTTTGGTAATTTTACCTACTAG
* * ** *
26078537 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACCTACTAG
*
26078565 TGGTATTTTGGTAATTTTA-CTAACTAG
1 GGGTATTTTGGTAATTTTACCT-ACTAG
* **
26078592 GGGTGTTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACCTACTAG
*
26078619 GGGTATTGTGGTAATTTTATCCTAC-AG
1 GGGTATTTTGGTAATTTTA-CCTACTAG
**
26078646 GGGTATTTCAGTAATTT
1 GGGTATTTTGGTAATTT
26078663 CACAATCGAG
Statistics
Matches: 98, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
27 92 0.94
28 6 0.06
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACCTACTAG
Found at i:26078651 original size:81 final size:81
Alignment explanation
Indices: 26078485--26078662 Score: 184
Period size: 81 Copynumber: 2.2 Consensus size: 81
26078475 ACAAATCAAA
* * * * *
26078485 GGTATTTCTGTAATTTT-GTAAATCAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGG
1 GGTATTTCAGTAATTTTACTAACT-AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
*
26078549 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGG
** *
26078566 GGTATTTTGGTAATTTTACTAACTAGGGGTGTTTTGGTAATTTTACAAACTAG-GGGTATTGT-G
1 GGTATTTCAGTAATTTTACTAACTAGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATT-TCG
* **
26078629 GTAATTTTATCCTA-CAGG
64 GTAATTTCA-CAAACCAGG
26078647 GGTATTTCAGTAATTT
1 GGTATTTCAGTAATTT
26078663 CACAATCGAG
Statistics
Matches: 80, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
81 71 0.89
82 9 0.11
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.42
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTACTAACTAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGT
AATTTCACAAACCAGG
Found at i:26078851 original size:27 final size:27
Alignment explanation
Indices: 26078666--26078850 Score: 275
Period size: 27 Copynumber: 6.9 Consensus size: 27
26078656 GTAATTTCAC
26078666 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
26078693 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
26078720 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
26078747 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
26078774 AATCGAGGGTAAAACGGTAA-TTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
26078800 AATCGAGGGTGAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
26078827 AATCGAGGGTAAAATGGTAATTTT
1 AATCGAGGGTAAAACGGTAATTTT
26078851 ACAAATTAAG
Statistics
Matches: 141, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
26 24 0.17
27 116 0.82
28 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:26078874 original size:80 final size:80
Alignment explanation
Indices: 26078709--26078882 Score: 222
Period size: 80 Copynumber: 2.1 Consensus size: 80
26078699 GGGTAAAATG
* * *
26078709 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTCTATA
1 GTAA-TTTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTACA
* * *
26078774 AATCGAGGGTAAAACG
65 AATCAAGGGCAAAACA
* *
26078790 GTAATTTGTAAATCGAGGGTGAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTACAA
1 GTAATTTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTACAA
* ***
26078855 ATTAAGGGCATTTCA
66 ATCAAGGGCAAAACA
26078870 GTAATTTGGTAAA
1 GTAATTT-GTAAA
26078883 CTAAAGTATT
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 71 0.89
81 9 0.11
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (80 bp):
GTAATTTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTACAA
ATCAAGGGCAAAACA
Found at i:26081800 original size:35 final size:35
Alignment explanation
Indices: 26081761--26081840 Score: 151
Period size: 35 Copynumber: 2.3 Consensus size: 35
26081751 GTGCCTTAAG
26081761 TTGCTGAAAAATTTCAAGCTTTCAAACCCTTAATT
1 TTGCTGAAAAATTTCAAGCTTTCAAACCCTTAATT
26081796 TTGCTGAAAAATTTCAAGCTTTCAAACCCTTAATT
1 TTGCTGAAAAATTTCAAGCTTTCAAACCCTTAATT
*
26081831 TTACTGAAAA
1 TTGCTGAAAA
26081841 TTCAGTAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (35 bp):
TTGCTGAAAAATTTCAAGCTTTCAAACCCTTAATT
Found at i:26090109 original size:18 final size:18
Alignment explanation
Indices: 26090064--26090109 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
26090054 GAGTAAGCTT
*
26090064 TATAACTTAGTAAGCCCC
1 TATAATTTAGTAAGCCCC
26090082 TA-AATCTTAGTAAGCCCC
1 TATAAT-TTAGTAAGCCCC
26090100 TATAATTTAG
1 TATAATTTAG
26090110 AATTAAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 2 0.08
18 20 0.80
19 3 0.12
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
TATAATTTAGTAAGCCCC
Found at i:26090237 original size:40 final size:40
Alignment explanation
Indices: 26090182--26090263 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
26090172 ATGCCTAAAC
*
26090182 ACAAACATTCATCAACAAGTTAGCCATAGAAGTAGATGTA
1 ACAAACATTCATCAACAAGTTAGCCATAGAAGTACATGTA
26090222 ACAAACATTCATCAACAAGTTAGCCATAGAAGTACATGTA
1 ACAAACATTCATCAACAAGTTAGCCATAGAAGTACATGTA
26090262 AC
1 AC
26090264 CATCCATTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (40 bp):
ACAAACATTCATCAACAAGTTAGCCATAGAAGTACATGTA
Found at i:26092589 original size:26 final size:26
Alignment explanation
Indices: 26092547--26092598 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26092537 AGGAGAGTGT
*
26092547 TTCTTTGTCGGGGTGGTGGACTCCAC
1 TTCTTTGTCGGGATGGTGGACTCCAC
*
26092573 TTCTTTGTTGGGATGGTGGACTCCAC
1 TTCTTTGTCGGGATGGTGGACTCCAC
26092599 CCGGTCCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.10, C:0.21, G:0.33, T:0.37
Consensus pattern (26 bp):
TTCTTTGTCGGGATGGTGGACTCCAC
Found at i:26095158 original size:10 final size:10
Alignment explanation
Indices: 26095143--26095167 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26095133 TTTTCTAGCA
26095143 ATTTAATTTT
1 ATTTAATTTT
26095153 ATTTAATTTT
1 ATTTAATTTT
26095163 ATTTA
1 ATTTA
26095168 TTAATTTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTAATTTT
Found at i:26099263 original size:68 final size:67
Alignment explanation
Indices: 26099191--26099340 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
26099181 CATCATGTGT
* * * *
26099191 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
26099253 ATGTAG
62 ATGTAG
** * *
26099259 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
26099324 AG
66 AG
26099326 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
26099341 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:26099296 original size:64 final size:64
Alignment explanation
Indices: 26099215--26099398 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
26099205 AGACATTATG
* *
26099215 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
26099279 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
26099344 AA
63 AA
* * * *
26099346 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
26099399 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26100487 original size:2 final size:2
Alignment explanation
Indices: 26100480--26100504 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26100470 TCGTGACATG
26100480 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26100505 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26115363 original size:25 final size:25
Alignment explanation
Indices: 26115329--26115378 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
26115319 CTTTGCGGTC
26115329 TTCCTTTCTAGGATTATCCTTACTT
1 TTCCTTTCTAGGATTATCCTTACTT
*
26115354 TTCCTTTCTAGGATTATCGTTACTT
1 TTCCTTTCTAGGATTATCCTTACTT
26115379 CTATATAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.16, C:0.22, G:0.10, T:0.52
Consensus pattern (25 bp):
TTCCTTTCTAGGATTATCCTTACTT
Found at i:26116725 original size:27 final size:27
Alignment explanation
Indices: 26116695--26116746 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
26116685 ATTACACTGT
* *
26116695 ACTAATACTATATTGGGCTTAGGCCAC
1 ACTAATACTATATAGGGCTAAGGCCAC
* *
26116722 ACTATTACTGTATAGGGCTAAGGCC
1 ACTAATACTATATAGGGCTAAGGCC
26116747 CAAACTGTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (27 bp):
ACTAATACTATATAGGGCTAAGGCCAC
Found at i:26121108 original size:20 final size:20
Alignment explanation
Indices: 26121085--26121125 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
26121075 AAACAGTAGC
26121085 TCATCCATATAAACAATATT
1 TCATCCATATAAACAATATT
*
26121105 TCATCCATATAAACAGTATT
1 TCATCCATATAAACAATATT
26121125 T
1 T
26121126 ATGCCCGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (20 bp):
TCATCCATATAAACAATATT
Found at i:26121312 original size:24 final size:22
Alignment explanation
Indices: 26121232--26121335 Score: 82
Period size: 23 Copynumber: 4.4 Consensus size: 22
26121222 TCGAGCTATG
*
26121232 AACAGTAAGCTCCTCCTGAGCTGA
1 AACAGTAAGCT-CT-ATGAGCTGA
*
26121256 TGAACAGTAAGCTCTATTGAGATGA
1 --AACAGTAAGCTCTA-TGAGCTGA
** *
26121281 AATGGTAAGTTCTGATGAGCTGA
1 AACAGTAAGCTCT-ATGAGCTGA
26121304 GAACAGTAAGCTCTTATGAGCTGA
1 -AACAGTAAGCTC-TATGAGCTGA
*
26121328 AATAGTAA
1 AACAGTAA
26121336 CCTCCAACTA
Statistics
Matches: 64, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
23 24 0.38
24 19 0.30
25 10 0.16
26 11 0.17
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (22 bp):
AACAGTAAGCTCTATGAGCTGA
Found at i:26129944 original size:40 final size:40
Alignment explanation
Indices: 26129884--26130051 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
26129874 CGGGATTTAA
* ** *
26129884 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
26129924 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
26129964 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
26130004 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
26130044 CCGGATAT
1 CCGGATAT
26130052 CATTCAAATG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 104 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:26130031 original size:80 final size:80
Alignment explanation
Indices: 26129870--26130051 Score: 215
Period size: 80 Copynumber: 2.3 Consensus size: 80
26129860 AATTCACGTA
* * * * **
26129870 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
26129934 TAACTTGCACAATTG
66 TAACTAGCACAAATG
* ** *
26129949 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
26130013 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
26130029 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
26130052 CATTCAAATG
Statistics
Matches: 86, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 11 0.13
80 73 0.85
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:26137992 original size:39 final size:39
Alignment explanation
Indices: 26137938--26138118 Score: 150
Period size: 40 Copynumber: 4.6 Consensus size: 39
26137928 AATTCACGTA
** *
26137938 CCTTCGGGAT-TTAACCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCGGATATAATAACTAGCACAATTG
* ** *
26137977 CCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCTTCGGGTCTTAA-CCGGATATAATAACTAGCACAATTG
* * *
26138017 CCTTCGGGTCTTAGCCCGGATATAAGAACTCGCACGAA-TG
1 CCTTCGGGTCTTA-ACCGGATATAATAACTAGCAC-AATTG
* * * * *
26138057 CCTTCGGGTCTTAGCCCGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCGGATATAATAACTAGCACAATTG
* *
26138096 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTA-ACCGGATAT
26138119 CATTCAAATG
Statistics
Matches: 114, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
38 3 0.03
39 41 0.36
40 68 0.60
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CCTTCGGGTCTTAACCGGATATAATAACTAGCACAATTG
Found at i:26138012 original size:40 final size:40
Alignment explanation
Indices: 26137968--26138118 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
26137958 ATAACCACAA
* ** *
26137968 GCACAATTGCCTTCGGGTCTTAACCCGGAT-TTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAG-AACTC
26138008 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAGAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAGAACTC
** *
26138048 GCACGAA-TGCCTTCGGGTCTTAGCCC-GATATAATCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAAGAACTC
* * *
26138087 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
26138119 CATTCAAATG
Statistics
Matches: 98, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.32
40 61 0.62
41 4 0.04
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAAGAACTC
Found at i:26140397 original size:24 final size:24
Alignment explanation
Indices: 26140357--26140430 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 24
26140347 AAGCTCTATT
* *
26140357 GAGCTGAAATTTG-AAGCTTTTAC
1 GAGCTGAAAATAGTAAGCTTTTAC
**
26140380 GAGCTGAAAATAGTAAGCTCATAC
1 GAGCTGAAAATAGTAAGCTTTTAC
* * * *
26140404 GAGCTGAGAACAATAAGATTTTAC
1 GAGCTGAAAATAGTAAGCTTTTAC
26140428 GAG
1 GAG
26140431 TTGATATATC
Statistics
Matches: 40, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 11 0.28
24 29 0.73
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (24 bp):
GAGCTGAAAATAGTAAGCTTTTAC
Found at i:26142441 original size:57 final size:57
Alignment explanation
Indices: 26142380--26142498 Score: 141
Period size: 58 Copynumber: 2.1 Consensus size: 57
26142370 CACATACCTG
* * *
26142380 TATATGGCCCAGTAGACCC-AATTATATTCACATGACCCTTTAGGCCCAAATCACATT
1 TATATGGCCCAGTAGACCCAAATCACATTCACATGACCCATTAGGCCCAAATCACA-T
* * * ** *
26142437 TATATGGCCCATTAGGCCCAAATCACATTTATGTGGCCCATTAGGCCCAAATCACAT
1 TATATGGCCCAGTAGACCCAAATCACATTCACATGACCCATTAGGCCCAAATCACAT
26142494 TATAT
1 TATAT
26142499 TCATGCTTAC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 23 0.44
58 29 0.56
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (57 bp):
TATATGGCCCAGTAGACCCAAATCACATTCACATGACCCATTAGGCCCAAATCACAT
Found at i:26142452 original size:29 final size:29
Alignment explanation
Indices: 26142419--26142498 Score: 144
Period size: 29 Copynumber: 2.8 Consensus size: 29
26142409 ACATGACCCT
26142419 TTAGGCCCAAATCACATTTATATGGCCCA
1 TTAGGCCCAAATCACATTTATATGGCCCA
*
26142448 TTAGGCCCAAATCACATTTATGTGGCCCA
1 TTAGGCCCAAATCACATTTATATGGCCCA
26142477 TTAGGCCCAAATCACA-TTATAT
1 TTAGGCCCAAATCACATTTATAT
26142499 TCATGCTTAC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
28 5 0.10
29 44 0.90
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (29 bp):
TTAGGCCCAAATCACATTTATATGGCCCA
Found at i:26142730 original size:16 final size:16
Alignment explanation
Indices: 26142706--26142757 Score: 79
Period size: 16 Copynumber: 3.2 Consensus size: 16
26142696 ACTTTTGGCT
*
26142706 TTTTTGGCATTTC-AGC
1 TTTTCGGCATTTCGA-C
26142722 TTTTCGGCATTTCGAC
1 TTTTCGGCATTTCGAC
26142738 TTTTCGGCATTTCGAC
1 TTTTCGGCATTTCGAC
26142754 TTTT
1 TTTT
26142758 GCTGATCTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
16 33 0.97
17 1 0.03
ACGTcount: A:0.12, C:0.21, G:0.17, T:0.50
Consensus pattern (16 bp):
TTTTCGGCATTTCGAC
Found at i:26149157 original size:2 final size:2
Alignment explanation
Indices: 26149150--26149182 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26149140 CAACCACTTA
26149150 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26149183 AAGCTAGCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26160555 original size:40 final size:40
Alignment explanation
Indices: 26160510--26160677 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
26160500 CGGAATATAA
26160510 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
26160550 CCGGATAGAAT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
26160590 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
26160630 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
26160670 CCGGATAT
1 CCGGATAT
26160678 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.02
40 101 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26160660 original size:80 final size:80
Alignment explanation
Indices: 26160526--26160675 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
26160516 ATAATCACGT
*
26160526 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATATCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGAT-TTAGC
26160590 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
26160606 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTC-GCACGAA-TGCCTTCGGGATTTAG
26160669 CCCGGAT
64 CCCGGAT
26160676 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATATCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:26170290 original size:39 final size:39
Alignment explanation
Indices: 26170227--26170408 Score: 140
Period size: 39 Copynumber: 4.6 Consensus size: 39
26170217 GCTACTCGTT
* * * *
26170227 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTT-GGGACTTAACCCGGATT-TAGTAACTCGCA
26170267 CAAATGCCTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTGGGACTTAACCCGGATTTAGTAACTCGCA
* ** *
26170306 CAAATGCCTTCGGATCTT-AGTCGGATTTAGTAACT-ACA
1 CAAATGCCTTGGGA-CTTAACCCGGATTTAGTAACTCGCA
* ** * * *
26170344 C-AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
26170384 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTT-GGGACTTAACCCGGA
26170409 CATCATTCGA
Statistics
Matches: 119, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
37 16 0.13
38 14 0.12
39 52 0.44
40 32 0.27
41 5 0.04
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26170358 original size:37 final size:38
Alignment explanation
Indices: 26170269--26170408 Score: 142
Period size: 39 Copynumber: 3.6 Consensus size: 38
26170259 AGCTCGCACA
* ** *
26170269 AATGCCTTGGGA-CTTAACCCGGATTTAGTAACTCGCAC
1 AATGCCTTCGGATCTTAGTCCGGATTTAGTAACT-ACAC
26170307 AAATGCCTTCGGATCTTAGT-CGGATTTAGTAACTACAC
1 -AATGCCTTCGGATCTTAGTCCGGATTTAGTAACTACAC
* *
26170345 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCAC
1 AATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TA-CAC
* *
26170385 AAAGCCTTCGGGA-CTTAGCCCGGA
1 AATGCCTTC-GGATCTTAGTCCGGA
26170409 CATCATTCGA
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
37 19 0.22
38 14 0.16
39 27 0.31
40 25 0.28
41 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (38 bp):
AATGCCTTCGGATCTTAGTCCGGATTTAGTAACTACAC
Found at i:26178288 original size:40 final size:40
Alignment explanation
Indices: 26178244--26178336 Score: 134
Period size: 40 Copynumber: 2.3 Consensus size: 40
26178234 GCTACTCGTT
* * *
26178244 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
26178284 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
26178324 CAAATGCCTTCGG
1 CAAATGCCTTCGG
26178337 ATCTTAGTCG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 46 0.96
41 2 0.04
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:26178381 original size:38 final size:39
Alignment explanation
Indices: 26178244--26178383 Score: 133
Period size: 40 Copynumber: 3.6 Consensus size: 39
26178234 GCTACTCGTT
* * * * *
26178244 CAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTAGCA
* * *
26178284 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-AGCCGGATATAGTAACTAGCA
* *
26178324 CAAATGCCTTC-GGATCTTAGTC-GATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCGGATATAGTAAC-TAGCA
26178363 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
26178384 CGGACATCAT
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
38 21 0.25
39 16 0.19
40 46 0.55
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGATATAGTAACTAGCA
Found at i:26181646 original size:40 final size:40
Alignment explanation
Indices: 26181591--26181834 Score: 352
Period size: 40 Copynumber: 6.1 Consensus size: 40
26181581 CAGACGATAA
* *
26181591 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
26181631 CCGGGCTAAGTCCCGAAGGCA-TTGTTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATA-T
26181671 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26181711 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
26181751 CCGGGCTAAGTCCCGAAGGCATTTGTACGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26181791 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
26181831 CCGG
1 CCGG
26181835 TTAAATCCCA
Statistics
Matches: 189, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 5 0.03
40 180 0.95
41 4 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26184002 original size:40 final size:40
Alignment explanation
Indices: 26183958--26184126 Score: 266
Period size: 40 Copynumber: 4.2 Consensus size: 40
26183948 TAACAACCAG
26183958 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
*
26183998 CACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCA
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
* * *
26184038 TACGAATGCCTTCGGGACTTAACTCGGTTATAATAACCCG
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
* * * *
26184078 CACAAATGCCTTTGGGACTTAACCCGGTTATAACAACCCG
1 CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
26184118 CACGAATGC
1 CACGAATGC
26184127 TATGCACATA
Statistics
Matches: 118, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 118 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (40 bp):
CACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCA
Found at i:26188094 original size:40 final size:40
Alignment explanation
Indices: 26188039--26188262 Score: 150
Period size: 39 Copynumber: 5.7 Consensus size: 40
26188029 ATTTGATGTG
26188039 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCT-TCATGCTGGAATTA
* *
26188079 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTA
* * * ** * * *
26188119 TATCCAGACCT-AAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTA
* * * * * * *
26188158 TATCCGGACTT-GAGATCCGCAGGCTTCGTGCTAGTACTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTA
* * ** * * * * *
26188197 TATCCAGACTT-AAGGTCTGCAGGCTTCGTACTGGTACTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTA
* * *
26188236 TATTCGGGCTTAAAGTCCCGTAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGGCTT
26188263 TGTGTTGGTG
Statistics
Matches: 152, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 97 0.64
40 55 0.36
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTA
Found at i:26188150 original size:39 final size:39
Alignment explanation
Indices: 26188068--26188230 Score: 173
Period size: 39 Copynumber: 4.2 Consensus size: 39
26188058 GCAGGCTATA
* * * **
26188068 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCG
1 TGCTGGAATTGTATCCAGACTT-AAGGTCCGCAGGCTTCG
* *
26188108 TGCTGGAATTGTATCCAGACCTAAGGTCCGCAAGCTTCG
1 TGCTGGAATTGTATCCAGACTTAAGGTCCGCAGGCTTCG
* * *
26188147 TGCTGGAATTGTATCCGGACTTGAGATCCGCAGGCTTCG
1 TGCTGGAATTGTATCCAGACTTAAGGTCCGCAGGCTTCG
* * * * *
26188186 TGCTAGTACTATATCCAGACTTAAGGTCTGCAGGCTTCG
1 TGCTGGAATTGTATCCAGACTTAAGGTCCGCAGGCTTCG
*
26188225 TACTGG
1 TGCTGG
26188231 TACTATATTC
Statistics
Matches: 101, Mismatches: 22, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
39 83 0.82
40 18 0.18
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (39 bp):
TGCTGGAATTGTATCCAGACTTAAGGTCCGCAGGCTTCG
Found at i:26188202 original size:78 final size:79
Alignment explanation
Indices: 26188068--26188262 Score: 221
Period size: 78 Copynumber: 2.5 Consensus size: 79
26188058 GCAGGCTATA
* * * *
26188068 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCAGACCTAAG
1 TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTAGAACTATATCCAGACCTAAG
26188133 GTCCGCAAGCTTCG
66 GTCCGCAAGCTTCG
* * * * *
26188147 TGCTGGAATTGTATCCGGACTT-GAGATCCGCAGGCTTCGTGCTAGTACTATATCCAGACTTAAG
1 TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTAGAACTATATCCAGACCTAAG
* *
26188211 GTCTGCAGGCTTCG
66 GTCCGCAAGCTTCG
* * * * * * *
26188225 TACTGGTACTATATTCGGGCTTAAAGTCCCGTAGGCTT
1 TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTT
26188263 TGTGTTGGTG
Statistics
Matches: 94, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 63 0.67
79 31 0.33
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.29
Consensus pattern (79 bp):
TGCTGGAATTATATCCGGACTTAAAGACCCGCAGGCTTCGTGCTAGAACTATATCCAGACCTAAG
GTCCGCAAGCTTCG
Found at i:26194422 original size:43 final size:42
Alignment explanation
Indices: 26194388--26194490 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 42
26194378 CTTACATTTT
26194388 ATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACAAGAA
1 ATCAAATA-CGATGCCACTGTCCCAGACAGGGTCTTACAAGAA
** * * *
26194431 ATCATGTACGATGCCAATGTCCCAGACATGGTCTTACACGTAA
1 ATCAAATACGATGCCACTGTCCCAGACAGGGTCTTACAAG-AA
26194474 ATCTCAAAT-CGATGCCA
1 A--TCAAATACGATGCCA
26194491 ACATCCCAGA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 29 0.58
43 9 0.18
44 8 0.16
45 4 0.08
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (42 bp):
ATCAAATACGATGCCACTGTCCCAGACAGGGTCTTACAAGAA
Found at i:26197234 original size:18 final size:18
Alignment explanation
Indices: 26197211--26197249 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
26197201 ATATCACAAA
26197211 ATGACCAAGTTCCTATAC
1 ATGACCAAGTTCCTATAC
26197229 ATGACCAAGTTCCTATAC
1 ATGACCAAGTTCCTATAC
26197247 ATG
1 ATG
26197250 CCATACTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (18 bp):
ATGACCAAGTTCCTATAC
Found at i:26197799 original size:51 final size:51
Alignment explanation
Indices: 26197736--26197835 Score: 123
Period size: 51 Copynumber: 2.0 Consensus size: 51
26197726 CTACCACATA
* *
26197736 ACATGTAACACATCCATAATGAAA-TCGGACCTCTAAATGAGCTCGGATGTT
1 ACATGTAACACATCCATAAT-AAACTCAGACCACTAAATGAGCTCGGATGTT
* * *
26197787 ACATG-AATCACATCCATCATAAACTTAGACCACTCAATGAGCTCGGATG
1 ACATGTAA-CACATCCATAATAAACTCAGACCACTAAATGAGCTCGGATG
26197836 CTCGCATCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
50 5 0.12
51 37 0.88
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (51 bp):
ACATGTAACACATCCATAATAAACTCAGACCACTAAATGAGCTCGGATGTT
Found at i:26197866 original size:43 final size:43
Alignment explanation
Indices: 26197797--26197880 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
26197787 ACATGAATCA
* * *
26197797 CATCCATCATAAACTTAGACCACTCAATGAGCTCGGATGCTCG
1 CATCCATAATAAACTTAGACCACTCAACGAGCTCAGATGCTCG
* * *
26197840 CATCCATAATGAACTTGGACCTCTCAACGAGCTCAGATGCT
1 CATCCATAATAAACTTAGACCACTCAACGAGCTCAGATGCT
26197881 ATATACCTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
CATCCATAATAAACTTAGACCACTCAACGAGCTCAGATGCTCG
Found at i:26208784 original size:13 final size:13
Alignment explanation
Indices: 26208766--26208790 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26208756 TGTAGGTTCA
26208766 CACGACCGTGTCG
1 CACGACCGTGTCG
26208779 CACGACCGTGTC
1 CACGACCGTGTC
26208791 TAGCTTCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
CACGACCGTGTCG
Found at i:26213333 original size:68 final size:70
Alignment explanation
Indices: 26213261--26213458 Score: 285
Period size: 71 Copynumber: 2.8 Consensus size: 70
26213251 ACACCCTGTA
* * * *
26213261 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
26213323 ATAAAT
65 ATAAAT
*
26213329 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
*
26213394 GTAAAT
65 ATAAAT
*
26213400 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
26213459 AGACAAATCG
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:26213384 original size:71 final size:71
Alignment explanation
Indices: 26213295--26213458 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
26213285 GAGATGTATC
26213295 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
26213360 AGGACA
66 AGGACA
*
26213366 CCATGTAGACAAGAGAGCTACGTGAAAGGTAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
26213431 AGGACA
66 AGGACA
26213437 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
26213459 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:26229529 original size:40 final size:39
Alignment explanation
Indices: 26229463--26229613 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
26229453 AAATTGAATG
* * *
26229463 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
26229502 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
26229542 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
26229582 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
26229614 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:26229627 original size:40 final size:39
Alignment explanation
Indices: 26229500--26229629 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
26229490 ATGCTGGAAA
* *
26229500 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
26229540 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
26229580 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
26229620 TTATATCCGG
1 TTATATCCGG
26229630 TTATATTCGA
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:26233441 original size:40 final size:39
Alignment explanation
Indices: 26233375--26233525 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
26233365 AAATTGAATG
* * *
26233375 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
26233414 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
26233454 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
26233494 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
26233526 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:26233539 original size:40 final size:39
Alignment explanation
Indices: 26233412--26233541 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
26233402 ATGCTGGAAA
* *
26233412 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
26233452 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
26233492 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
26233532 TTATATCCGG
1 TTATATCCGG
26233542 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:26235203 original size:52 final size:52
Alignment explanation
Indices: 26235141--26235242 Score: 177
Period size: 52 Copynumber: 2.0 Consensus size: 52
26235131 ATTTATGCGA
*
26235141 CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATGATAGATGCGATACATGTGG
1 CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATAATAGATGCGATACATGTGG
* *
26235193 CATCCGAGCTCGTTGAGTTGGTCTGAGTTCATAATGGATGCGATACATGT
1 CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATAATAGATGCGATACATGT
26235243 AATTGGGTTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (52 bp):
CATCCGAGCTCGTTGAGTTGGTCCGAGTTCATAATAGATGCGATACATGTGG
Found at i:26239487 original size:38 final size:39
Alignment explanation
Indices: 26239410--26239488 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 39
26239400 TTGAATATCA
*
26239410 CATGTAGGGAATAACTCAACCTGTACCAACCAAGCTCTC
1 CATGTAGGGAATAACTCAACCTCTACCAACCAAGCTCTC
* *
26239449 CATGTAGGGAATAACTCAACC-CTCCCAACCAAGGTCTC
1 CATGTAGGGAATAACTCAACCTCTACCAACCAAGCTCTC
26239487 CA
1 CA
26239489 CTGGCAGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
38 16 0.43
39 21 0.57
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.19
Consensus pattern (39 bp):
CATGTAGGGAATAACTCAACCTCTACCAACCAAGCTCTC
Found at i:26239803 original size:27 final size:27
Alignment explanation
Indices: 26239773--26240077 Score: 441
Period size: 27 Copynumber: 11.3 Consensus size: 27
26239763 TACCCCATAA
*
26239773 GGGTATCTCGGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
* *
26239800 GGGTATTTCGGTATTTCTATCC-TACAA
1 GGGTATTTCGGTAATTCTA-CCTTACAG
* *
26239827 GGGTATTTCAGTAATTCTACCTTATAG
1 GGGTATTTCGGTAATTCTACCTTACAG
* **
26239854 GGATATTTTAGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
26239881 GGGTATTTCGGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
26239908 GGGTATTTCGGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
*
26239935 GGGTATTTCAGTAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
*
26239962 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
* * *
26239989 GGGTATTTCAGTAATTCTACCCTGCAG
1 GGGTATTTCGGTAATTCTACCTTACAG
*
26240016 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
** *
26240043 GGGTATTTTAGTAATTCTACCATACAG
1 GGGTATTTCGGTAATTCTACCTTACAG
26240070 GGGTATTT
1 GGGTATTT
26240078 TAGTAATTTT
Statistics
Matches: 248, Mismatches: 28, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 2 0.01
27 244 0.98
28 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCTTACAG
Found at i:26240078 original size:27 final size:27
Alignment explanation
Indices: 26239783--26240139 Score: 418
Period size: 27 Copynumber: 13.2 Consensus size: 27
26239773 GGGTATCTCG
**
26239783 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCTTACAGGGGTATTTTA
* * *
26239810 GTATTTCTATCC-TACAAGGGTATTTCA
1 GTAATTCTA-CCTTACAGGGGTATTTTA
* *
26239837 GTAATTCTACCTTATAGGGATATTTTA
1 GTAATTCTACCTTACAGGGGTATTTTA
**
26239864 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCTTACAGGGGTATTTTA
**
26239891 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCTTACAGGGGTATTTTA
*
26239918 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTTA
*
26239945 GTAATTCTACCTTACAGGGGTA-TTTC
1 GTAATTCTACCTTACAGGGGTATTTTA
*
26239971 GATAATTCTACCTTACAGGGGTATTTCA
1 G-TAATTCTACCTTACAGGGGTATTTTA
* * *
26239999 GTAATTCTACCCTGCAGGGGTA-TTTC
1 GTAATTCTACCTTACAGGGGTATTTTA
26240025 GATAATTCTACCTTACAGGGGTATTTTA
1 G-TAATTCTACCTTACAGGGGTATTTTA
*
26240053 GTAATTCTACCATACAGGGGTATTTTA
1 GTAATTCTACCTTACAGGGGTATTTTA
* **
26240080 GTAATTTTA-CAAACCAGGGGTATTTTA
1 GTAATTCTACCTTA-CAGGGGTATTTTA
* **
26240107 GTAATTTTA-CAAACCAGGGGTATTTTA
1 GTAATTCTACCTTA-CAGGGGTATTTTA
26240134 GTAATT
1 GTAATT
26240140 TTACTGATCG
Statistics
Matches: 296, Mismatches: 27, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.04
27 276 0.93
28 9 0.03
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCTTACAGGGGTATTTTA
Found at i:26242054 original size:21 final size:21
Alignment explanation
Indices: 26242028--26242088 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
26242018 CACAGCCTGT
26242028 TCACACGGCCGTGT-CC-CAGG
1 TCACACGGCCGTGTGCCTCA-G
* *
26242048 CTCACACGGGCATGTGCCTCAG
1 -TCACACGGCCGTGTGCCTCAG
*
26242070 TCACACGGCCGTGTACCTC
1 TCACACGGCCGTGTGCCTC
26242089 CCTCCACATG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 28 0.85
22 3 0.09
23 2 0.06
ACGTcount: A:0.16, C:0.39, G:0.26, T:0.18
Consensus pattern (21 bp):
TCACACGGCCGTGTGCCTCAG
Found at i:26250194 original size:25 final size:25
Alignment explanation
Indices: 26250166--26250244 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
26250156 ACTCGGCCCT
*
26250166 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
26250191 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
26250213 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
26250238 ATCACAT
1 ATCACAT
26250245 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:26250290 original size:49 final size:49
Alignment explanation
Indices: 26250116--26250467 Score: 554
Period size: 49 Copynumber: 7.3 Consensus size: 49
26250106 CCCTTCGGGA
* * * * * * *
26250116 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26250163 CCTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
26250210 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
26250257 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
26250306 CTTAGCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
26250355 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
26250404 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
26250453 CTTATCACATATATA
1 CTTATCACATATATA
26250468 TATCTCATAC
Statistics
Matches: 287, Mismatches: 12, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 95 0.33
48 3 0.01
49 189 0.66
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26254151 original size:41 final size:40
Alignment explanation
Indices: 26254106--26254225 Score: 179
Period size: 40 Copynumber: 3.0 Consensus size: 40
26254096 CTCGGTATAT
* *
26254106 TGTATATCCGGGTTAAATCCAGTAGGCTTCGGTGCTGGTAA
1 TGTATATCCGGGTTAAATCCCGCAGGCTTC-GTGCTGGTAA
*
26254147 TGTATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TGTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
26254187 AGTATATCCGGGTTAAATCCCGCAGGCTTAC-TGCTGGTA
1 TGTATATCCGGGTTAAATCCCGCAGGCTT-CGTGCTGGTA
26254226 CTATATCCGG
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
40 45 0.62
41 28 0.38
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (40 bp):
TGTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
Found at i:26265128 original size:20 final size:19
Alignment explanation
Indices: 26265086--26265128 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
26265076 TTTTAATTTT
26265086 GTTGTTTTTAATTTTAATC
1 GTTGTTTTTAATTTTAATC
*
26265105 -TTGTTTATTAATTTTTATC
1 GTTGTTT-TTAATTTTAATC
26265124 GTTGT
1 GTTGT
26265129 CTCCAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 6 0.29
19 11 0.52
20 4 0.19
ACGTcount: A:0.19, C:0.05, G:0.12, T:0.65
Consensus pattern (19 bp):
GTTGTTTTTAATTTTAATC
Found at i:26265951 original size:19 final size:19
Alignment explanation
Indices: 26265927--26265964 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26265917 CAAAAGTTTT
26265927 ACTTAGAATCCAAAACCAA
1 ACTTAGAATCCAAAACCAA
26265946 ACTTAGAATCCAAAACCAA
1 ACTTAGAATCCAAAACCAA
26265965 CTTTGAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.26, G:0.05, T:0.16
Consensus pattern (19 bp):
ACTTAGAATCCAAAACCAA
Found at i:26268342 original size:48 final size:49
Alignment explanation
Indices: 26268201--26268372 Score: 172
Period size: 48 Copynumber: 3.6 Consensus size: 49
26268191 ATTAATGAGA
* * * *
26268201 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGTATTGATA--TGAT
1 GCCAGTGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGTGAT
* * * *
26268248 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGATATGTG-T
1 -GCCAGTGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGTGAT
* * * * *
26268297 GCCAGTATAAGACCATATCTAGGATATGGCGTCAGCCTCGGTATGTGAT
1 GCCAGTGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGTGAT
**
26268346 TTCA-TGTAAGACCATATCTGGGATATG
1 GCCAGTGTAAGACCATATCTGGGATATG
26268373 ACATTGATAT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
48 98 0.94
49 4 0.04
50 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (49 bp):
GCCAGTGTAAGACCATATCTGGGATATGGCATCAGCATCGATATGTGAT
Found at i:26268402 original size:42 final size:42
Alignment explanation
Indices: 26268338--26268546 Score: 161
Period size: 42 Copynumber: 4.8 Consensus size: 42
26268328 TCAGCCTCGG
* * * *
26268338 TATGTGATTTCATGTAAGACCATATCTGGGATATGACATTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGACATTGA
*
26268380 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGACATTGA
* * * * * *
26268422 TGTGAG-GTCCTGTGTAAAACCATGTCTGGGACATGGCATCGGCA
1 TATGAGATTTC-GTGTAAGACCATGTCTGGGACATGACAT-TG-A
* * * * **
26268466 CTGACGTGAGGTTTCGTATAAGACCATATCTGGGATATGACATCAA
1 -T-A--TGAGATTTCGTGTAAGACCATGTCTGGGACATGACATTGA
* *
26268512 TATGTAGA-CTCATGTAAGACCATGTCTGGGACATG
1 TATG-AGATTTCGTGTAAGACCATGTCTGGGACATG
26268547 GCTTTGGAAT
Statistics
Matches: 132, Mismatches: 26, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
41 2 0.02
42 93 0.70
43 3 0.02
44 2 0.02
45 2 0.02
46 1 0.01
48 27 0.20
49 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATGTCTGGGACATGACATTGA
Found at i:26271935 original size:49 final size:49
Alignment explanation
Indices: 26271852--26272166 Score: 549
Period size: 49 Copynumber: 6.4 Consensus size: 49
26271842 AATGTGCAAG
26271852 TGTGAAAATGTATATATATGTGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAA
26271903 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
26271952 TGTGAAAATGTATATATATGTGATAAGGCCTAATTGCCGATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
26272001 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
26272050 TGTGAAAGTGTATATATATGTGATAAGGCGTAATGGCCAATGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
26272099 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
26272148 TATGAAAGTGTATATATAT
1 TGTGAAAATGTATATATAT
26272167 ATGTGGTAAA
Statistics
Matches: 253, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
49 235 0.93
51 18 0.07
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:26274500 original size:35 final size:35
Alignment explanation
Indices: 26274461--26274532 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
26274451 GTCTAAGATC
26274461 GCATATCTTTGAAGATCT-CCTTCCATATTTGCCAA
1 GCATATCTTTGAAGAT-TACCTTCCATATTTGCCAA
*
26274496 GCATATCTTTGAAGATTACTTTCCATATTTGCCAA
1 GCATATCTTTGAAGATTACCTTCCATATTTGCCAA
26274531 GC
1 GC
26274533 TCCGGAGATG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 1 0.03
35 34 0.97
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (35 bp):
GCATATCTTTGAAGATTACCTTCCATATTTGCCAA
Found at i:26279727 original size:35 final size:35
Alignment explanation
Indices: 26279688--26279759 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
26279678 GTCTAAGATC
26279688 GCATATCTTTGAAGATCT-CCTTCCATATTTGCCAA
1 GCATATCTTTGAAGAT-TACCTTCCATATTTGCCAA
*
26279723 GCATATCTTTGAAGATTACTTTCCATATTTGCCAA
1 GCATATCTTTGAAGATTACCTTCCATATTTGCCAA
26279758 GC
1 GC
26279760 TCCGGAGATG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 1 0.03
35 34 0.97
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (35 bp):
GCATATCTTTGAAGATTACCTTCCATATTTGCCAA
Found at i:26287226 original size:40 final size:40
Alignment explanation
Indices: 26287178--26287368 Score: 294
Period size: 40 Copynumber: 4.8 Consensus size: 40
26287168 GGACTAAGAT
*
26287178 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
26287218 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
26287258 CTGAAGGCATTTGAGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
26287298 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
26287338 CGGAAGGCATTCGTGCGAGTTG-CTATATCCG
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCG
26287369 ACTAAATTCC
Statistics
Matches: 140, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 138 0.99
41 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:26295165 original size:40 final size:40
Alignment explanation
Indices: 26295117--26295321 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
26295107 GGACTAAGAT
*
26295117 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
26295157 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
26295196 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
26295236 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
26295276 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
26295315 CCGAAGG
1 CCGAAGG
26295322 TACTTGGGTT
Statistics
Matches: 156, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 52 0.33
40 102 0.65
41 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:26295247 original size:79 final size:79
Alignment explanation
Indices: 26295105--26295321 Score: 321
Period size: 79 Copynumber: 2.7 Consensus size: 79
26295095 CGAATGATAA
* *
26295105 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
26295170 TGCTAGTGATTATAT
65 TGCTAGTGACTATAT
26295185 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
26295250 GCTAGTGACTATGT
66 GCTAGTGACTATAT
* * * *
26295264 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
26295322 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
79 91 0.72
80 34 0.27
81 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCTAGTGACTATAT
Found at i:26300089 original size:40 final size:40
Alignment explanation
Indices: 26300052--26300237 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
26300042 GCTACTCGTT
* * *
26300052 CAAATGTCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
26300092 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
26300132 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
26300172 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
26300213 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26300238 CATCATTCGA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26306709 original size:40 final size:40
Alignment explanation
Indices: 26306627--26306847 Score: 320
Period size: 40 Copynumber: 5.5 Consensus size: 40
26306617 ACCCAAGTTT
* * * *
26306627 CTTCGGGAT-TTAG-CCGGATATAACCACACGCCCAATTGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTCGCACAAATGC
* * * *
26306666 CTTCGGGTCTTAACCCGAACATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
26306706 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
* *
26306746 CTTTGAGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
26306786 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
*
26306826 CTTCGGGGCTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
26306848 CATTCAAATG
Statistics
Matches: 163, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.06
40 152 0.93
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:26313203 original size:43 final size:43
Alignment explanation
Indices: 26313155--26313254 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
26313145 TCCCGGACGT
* * * **
26313155 GGTCTTACATGTAATTTAG-TATCTATGCCTCTGTCCCAGACAG
1 GGTCTTACATGTAAATCAGATA-CGATGCCAATGTCCCAGACAG
*
26313198 GGTCTTACATG-AAATCAGATACGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAAATCAGATACGATGCCAATGTCCCAGACAG
*
26313240 GGTCTTACACGTAAA
1 GGTCTTACATGTAAA
26313255 ATCCCAAATC
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 32 0.67
43 16 0.33
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAGATACGATGCCAATGTCCCAGACAG
Found at i:26318745 original size:32 final size:32
Alignment explanation
Indices: 26318708--26318786 Score: 104
Period size: 32 Copynumber: 2.5 Consensus size: 32
26318698 TAGTTGTGCT
* * *
26318708 ACAAAGGCTATCTTTTACATTTAGTACTCGCC
1 ACAAAGGCTATCCTTTACATTCAATACTCGCC
* *
26318740 ACAAAGGCTTTCCTTTACATTCAATACTCTCC
1 ACAAAGGCTATCCTTTACATTCAATACTCGCC
*
26318772 ACAAAGGCTTTCCTT
1 ACAAAGGCTATCCTT
26318787 CTCCTGGTGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (32 bp):
ACAAAGGCTATCCTTTACATTCAATACTCGCC
Found at i:26319124 original size:17 final size:17
Alignment explanation
Indices: 26319104--26319137 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26319094 AAGCACACCA
26319104 TAGTCATACAAATTCAT
1 TAGTCATACAAATTCAT
*
26319121 TAGTCTTACAAATTCAT
1 TAGTCATACAAATTCAT
26319138 AGTTTATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.38
Consensus pattern (17 bp):
TAGTCATACAAATTCAT
Found at i:26331404 original size:21 final size:20
Alignment explanation
Indices: 26331372--26331410 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26331362 GATGATGTTG
26331372 ATGTAGAGTTTTTCAGAAATC
1 ATGTAGAGTTTTT-AGAAATC
26331393 ATGTCAGA-TTTTTAGAAA
1 ATGT-AGAGTTTTTAGAAA
26331411 AGTTTCTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 9 0.53
22 3 0.18
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (20 bp):
ATGTAGAGTTTTTAGAAATC
Found at i:26336492 original size:19 final size:20
Alignment explanation
Indices: 26336468--26336510 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
26336458 GCCCATCAGG
*
26336468 CCCATTTAGCCCATTC-CAA
1 CCCATTTAGCCAATTCTCAA
*
26336487 CCCATTTGGCCAATTCTCAA
1 CCCATTTAGCCAATTCTCAA
26336507 CCCA
1 CCCA
26336511 AGTCTACGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.26, C:0.42, G:0.07, T:0.26
Consensus pattern (20 bp):
CCCATTTAGCCAATTCTCAA
Found at i:26336617 original size:24 final size:24
Alignment explanation
Indices: 26336581--26336635 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
26336571 TACCGTAGCC
*
26336581 CAAC-TTTCGGCTTTTTGGCATTT
1 CAACTTTTCAGCTTTTTGGCATTT
26336604 CAACTTTTCAGCTTTTTGGCATTT
1 CAACTTTTCAGCTTTTTGGCATTT
*
26336628 CAGCTTTT
1 CAACTTTT
26336636 GCCGATTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 4 0.14
24 25 0.86
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.49
Consensus pattern (24 bp):
CAACTTTTCAGCTTTTTGGCATTT
Found at i:26338452 original size:69 final size:69
Alignment explanation
Indices: 26338336--26338475 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
26338326 GGAGAGACCT
* *
26338336 TAAGGAAAACTAAGTCCCCCACTGCAAAGTCTATTTCTTGATGCTTAAGGTCAGCATATGACTTC
1 TAAGGAAAACTAAGTCCCCCACTGCAAACTCTATTTCTTGATACTTAAGGTCAGCATATGACTTC
26338401 TGCC
66 TGCC
26338405 TAAGGAAAACTAAGTCCCCCACTGCAAACTCTATTTCTTGATACTTAAGGTCAGCATATGACTTC
1 TAAGGAAAACTAAGTCCCCCACTGCAAACTCTATTTCTTGATACTTAAGGTCAGCATATGACTTC
26338470 TGCC
66 TGCC
26338474 TA
1 TA
26338476 TCTGAGGCCT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (69 bp):
TAAGGAAAACTAAGTCCCCCACTGCAAACTCTATTTCTTGATACTTAAGGTCAGCATATGACTTC
TGCC
Found at i:26343161 original size:21 final size:21
Alignment explanation
Indices: 26343136--26343192 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
26343126 TCAGGTTCTC
26343136 ATAATTATAATGAAAATAATA
1 ATAATTATAATGAAAATAATA
* ** *
26343157 ATAATAATAATTCAAGTAATA
1 ATAATTATAATGAAAATAATA
*
26343178 ATAACT-TAATGAAAA
1 ATAATTATAATGAAAA
26343193 CCTTGTTACA
Statistics
Matches: 27, Mismatches: 9, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.32
Consensus pattern (21 bp):
ATAATTATAATGAAAATAATA
Found at i:26344091 original size:29 final size:29
Alignment explanation
Indices: 26344025--26344143 Score: 136
Period size: 29 Copynumber: 4.2 Consensus size: 29
26344015 TACATACATG
* *
26344025 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * *
26344053 CAAATGGCCCATTTGGCCCAGTTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* *
26344082 CTTATGGCCCACTAGGCCCAATTC-TCATT
1 CATATGGCCCATTAGGCCCAATTCAT-ATT
*
26344111 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
26344140 -ATAT
1 CATAT
26344144 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
28 22 0.29
29 52 0.69
30 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:26344129 original size:58 final size:57
Alignment explanation
Indices: 26344027--26344139 Score: 172
Period size: 58 Copynumber: 2.0 Consensus size: 57
26344017 CATACATGCA
* * **
26344027 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATTTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCT
*
26344084 TATGGCCCACTAGGCCCAATTCTCATTCATATGGCCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCTCATTCAAATGGCCCATTAGGCCCAAATCATATT
26344140 ATATTCATGC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 19 0.38
58 31 0.62
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCT
Found at i:26344404 original size:24 final size:24
Alignment explanation
Indices: 26344355--26344405 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
26344345 GTAGCCCAAC
* * *
26344355 TTTCGGCTTTTCGCCATTCTGACT
1 TTTCAGCTTTTCGACATTCAGACT
26344379 TTTCAGCTTTTCGACATTTCAG-CT
1 TTTCAGCTTTTCGACA-TTCAGACT
26344403 TTT
1 TTT
26344406 TCCGATTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.12, C:0.25, G:0.14, T:0.49
Consensus pattern (24 bp):
TTTCAGCTTTTCGACATTCAGACT
Found at i:26346627 original size:29 final size:28
Alignment explanation
Indices: 26346529--26346643 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
26346519 GTGAGCATCA
* *
26346529 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
* * *
26346557 ATATAAATGTCATTTGGGCCTAATAGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
26346586 ATGT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGA-TTGGGCCTAATGGGCC
* *
26346615 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
26346643 A
1 A
26346644 GATACAGGTA
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
28 27 0.38
29 43 0.61
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:26346652 original size:57 final size:58
Alignment explanation
Indices: 26346542--26346652 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 58
26346532 TGAATGTGAC
*
26346542 TGGGCCTAACGGGCCATATAAATGTCATTTGGGCCTAATAGGCCATGTACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATCATTTGGGCCTAATAGGCCATGTACAGGTGATT
* * * * *
26346600 TGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCA-GATACAGGT
1 TGGGCCTAACGGGCCATATAAATATCATTTGGGCCTAATAGGCCATG-TACAGGT
26346653 ATGTGAAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 1 0.02
57 22 0.48
58 23 0.50
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATCATTTGGGCCTAATAGGCCATGTACAGGTGATT
Found at i:26351941 original size:42 final size:42
Alignment explanation
Indices: 26351878--26351961 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
26351868 CCATATCTAA
**
26351878 CATAACCTAATTAACTGCATTTCCAACATGCCAACTCTCACT
1 CATAACCTAATTAACCACATTTCCAACATGCCAACTCTCACT
26351920 CATAACCTAATTAACCACATTTCCAACATGCCAACTCTCACT
1 CATAACCTAATTAACCACATTTCCAACATGCCAACTCTCACT
26351962 ACTTTGATCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.35, C:0.35, G:0.04, T:0.27
Consensus pattern (42 bp):
CATAACCTAATTAACCACATTTCCAACATGCCAACTCTCACT
Found at i:26353225 original size:21 final size:20
Alignment explanation
Indices: 26353197--26353236 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26353187 TATGTATGAG
26353197 TTTTAATGATTGATGATAGA
1 TTTTAATGATTGATGATAGA
*
26353217 TTTTGAATGTTTGATGATAG
1 TTTT-AATGATTGATGATAG
26353237 TTATACAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (20 bp):
TTTTAATGATTGATGATAGA
Found at i:26355426 original size:40 final size:40
Alignment explanation
Indices: 26355371--26355588 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
26355361 CGGATGATAA
* * *
26355371 CCGGGCGAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
26355411 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26355451 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26355491 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26355531 CCGGGCTAAATCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
26355571 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26355589 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 18 0.11
40 144 0.88
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26363487 original size:39 final size:40
Alignment explanation
Indices: 26363389--26363565 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
26363379 CGGATGATAA
* * *
26363389 CCGGGCTAAGTCCCTAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
26363429 CCGGGCTAAGCCCCGAAGGCATTTGTGC-AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26363468 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
26363508 CCGGGCTGAGTCCCGAAGGCATTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
26363548 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26363566 TACTTGGTTT
Statistics
Matches: 121, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 50 0.41
40 71 0.59
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26363554 original size:79 final size:79
Alignment explanation
Indices: 26363389--26363565 Score: 216
Period size: 79 Copynumber: 2.2 Consensus size: 79
26363379 CGGATGATAA
* * *
26363389 CCGGGCTAAGTCCCTAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCCGAAGGCATTTG
**
26363454 TGCAGTTACTATAT
66 AACAGTTACTATAT
* * *
26363468 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTGAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGCCCCGAAGGCATTT
26363532 GAACGAG-TAGCTATAT
65 GAAC-AGTTA-CTATAT
* *
26363548 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCAAAGG
26363566 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.02
79 73 0.86
80 10 0.12
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCCGAAGGCATTTG
AACAGTTACTATAT
Found at i:26368597 original size:18 final size:19
Alignment explanation
Indices: 26368574--26368612 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26368564 TTTATCTCAA
*
26368574 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
26368592 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
26368611 TT
1 TT
26368613 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:26368651 original size:18 final size:18
Alignment explanation
Indices: 26368630--26368679 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
26368620 AAACTCTTTT
26368630 TCATTCTCTTTTTCAATC
1 TCATTCTCTTTTTCAATC
* *
26368648 TCATTTTCTTTTTCACTC
1 TCATTCTCTTTTTCAATC
* *
26368666 TCAATCTCATTTTC
1 TCATTCTCTTTTTC
26368680 TTTTTTTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.16, C:0.28, G:0.00, T:0.56
Consensus pattern (18 bp):
TCATTCTCTTTTTCAATC
Found at i:26368680 original size:24 final size:24
Alignment explanation
Indices: 26368605--26368684 Score: 97
Period size: 24 Copynumber: 3.3 Consensus size: 24
26368595 CTTGTTCACA
* *
26368605 TTCTTTTTCTCTCTCAAACTCTTT
1 TTCTTTTTCTCTCTCAATCTCATT
* * * *
26368629 TTCATTCTCTTTTTCAATCTCATT
1 TTCTTTTTCTCTCTCAATCTCATT
*
26368653 TTCTTTTTCACTCTCAATCTCATT
1 TTCTTTTTCTCTCTCAATCTCATT
26368677 TTCTTTTT
1 TTCTTTTT
26368685 TTTTCATTTC
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.14, C:0.26, G:0.00, T:0.60
Consensus pattern (24 bp):
TTCTTTTTCTCTCTCAATCTCATT
Found at i:26368737 original size:42 final size:42
Alignment explanation
Indices: 26368691--26368779 Score: 144
Period size: 42 Copynumber: 2.1 Consensus size: 42
26368681 TTTTTTTTCA
* *
26368691 TTTCTTTGTTTCTT-TTCTCGATTTCATTCAAGATTCTCTCAT
1 TTTCTTTGTTTCTTCTT-TCGATTTCATTCAAAATCCTCTCAT
26368733 TTTCTTTGTTTCTTCTTTCGATTTCATTCAAAATCCTCTCAT
1 TTTCTTTGTTTCTTCTTTCGATTTCATTCAAAATCCTCTCAT
26368775 TTTCT
1 TTTCT
26368780 CTCATAATCT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
42 42 0.95
43 2 0.05
ACGTcount: A:0.15, C:0.22, G:0.06, T:0.57
Consensus pattern (42 bp):
TTTCTTTGTTTCTTCTTTCGATTTCATTCAAAATCCTCTCAT
Found at i:26371220 original size:10 final size:10
Alignment explanation
Indices: 26371207--26371241 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
26371197 AAGCTCGGTT
26371207 GAGCTCAAAC
1 GAGCTCAAAC
*
26371217 GAGCTAAAAC
1 GAGCTCAAAC
*
26371227 GAGCTCAAAT
1 GAGCTCAAAC
26371237 GAGCT
1 GAGCT
26371242 GAGTTGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.14
Consensus pattern (10 bp):
GAGCTCAAAC
Found at i:26371250 original size:20 final size:20
Alignment explanation
Indices: 26371204--26371251 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
26371194 AGTAAGCTCG
26371204 GTTGAGCTCAAACGAGCTAA
1 GTTGAGCTCAAACGAGCTAA
*** * *
26371224 AACGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTAA
26371244 GTTGAGCT
1 GTTGAGCT
26371252 GGACAGAGCT
Statistics
Matches: 20, Mismatches: 8, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTAA
Found at i:26371280 original size:20 final size:20
Alignment explanation
Indices: 26371233--26371281 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
26371223 AAACGAGCTC
26371233 AAATGAGCTGAGTTGAGCTGG
1 AAATGAGCTGAG-TGAGCTGG
*
26371254 ACA-GAGCTCGAG-GAGCTGG
1 AAATGAGCT-GAGTGAGCTGG
26371273 AAATGAGCT
1 AAATGAGCT
26371282 AGGATCAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 9 0.38
20 10 0.42
21 5 0.21
ACGTcount: A:0.31, C:0.14, G:0.37, T:0.18
Consensus pattern (20 bp):
AAATGAGCTGAGTGAGCTGG
Found at i:26376730 original size:40 final size:39
Alignment explanation
Indices: 26376570--26376732 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
26376560 TGTGTATGAA
*
26376570 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
26376609 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26376648 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26376687 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26376727 TGTGCG
1 TGTGCG
26376733 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26376748 original size:40 final size:39
Alignment explanation
Indices: 26376570--26376763 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
26376560 TGTGTATGAA
* *
26376570 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
26376609 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26376648 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26376687 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
26376727 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
26376764 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26384511 original size:37 final size:38
Alignment explanation
Indices: 26384446--26384602 Score: 189
Period size: 37 Copynumber: 4.2 Consensus size: 38
26384436 TGTGTATGAA
*
26384446 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGA-ATCCGGGCTAAGCCCGAAGGCAAT
26384485 TGTGCGAGTTGTG-ATCCGGGCTAAGCCCGAA-G-AAT
1 TGTGCGAGTTGTGAATCCGGGCTAAGCCCGAAGGCAAT
* * *
26384520 GGTGCGAGCTATGATATCCGGGCTAAG--CGAAGGCAAT
1 TGTGCGAGTTGTGA-ATCCGGGCTAAGCCCGAAGGCAAT
* *
26384557 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGA-ATCCGGGCTAAG-CCCGAAGGCAAT
26384597 TGTGCG
1 TGTGCG
26384603 GGTTACCATA
Statistics
Matches: 102, Mismatches: 9, Indels: 13
0.82 0.07 0.10
Matches are distributed among these distances:
35 17 0.17
36 2 0.02
37 56 0.55
39 12 0.12
40 15 0.15
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.24
Consensus pattern (38 bp):
TGTGCGAGTTGTGAATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26384618 original size:40 final size:39
Alignment explanation
Indices: 26384463--26384637 Score: 110
Period size: 37 Copynumber: 4.6 Consensus size: 39
26384453 ATTGTGATAT
* * ***
26384463 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGAT--
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACCATAA
* * * * ** *
26384500 CCGGGCTAAGCCCGAA-G-AATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
26384537 CCGGGCTAAG--CGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACCATAA
* *
26384574 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACCATAA
* *
26384614 CCGGGCTATGTCCGAAGGCGTTTG
1 CCGGGCTAAGTCCGAAGGCATTTG
26384638 AACGAGTAGC
Statistics
Matches: 115, Mismatches: 16, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
35 19 0.17
36 2 0.02
37 52 0.45
39 12 0.10
40 30 0.26
ACGTcount: A:0.22, C:0.21, G:0.34, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:26391910 original size:40 final size:40
Alignment explanation
Indices: 26391854--26391991 Score: 233
Period size: 40 Copynumber: 3.5 Consensus size: 40
26391844 GGATGATAAT
26391854 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
* *
26391894 TGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
26391934 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TC
*
26391974 CGGGCTATGTCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
26391992 TATTCAGCGA
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 91 0.99
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
Found at i:26392013 original size:39 final size:40
Alignment explanation
Indices: 26391854--26392015 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
26391844 GGATGATAAT
**
26391854 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTCAGCGAGTTACTATA-TC
* **
26391894 TGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTCAGCGAGTTACTA-TATC
**
26391934 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTCAGCGAGTTACTATATC
* *
26391974 CGGGCTATGTCCCGAAGGTA-TTCAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTCAGCGAGTTA-CTATATC
26392013 CGG
1 CGG
26392016 TTAAACCCGA
Statistics
Matches: 112, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.02
39 18 0.16
40 92 0.82
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTCAGCGAGTTACTATATC
Found at i:26396328 original size:124 final size:124
Alignment explanation
Indices: 26396106--26396330 Score: 308
Period size: 124 Copynumber: 1.8 Consensus size: 124
26396096 GAATTATGTG
* * * * * * * *
26396106 AAATGAAATATGGATGTGTATTGACTATTGATTTTTGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGACTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
26396171 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
* *
26396230 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGACTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
26396295 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
26396331 CCGGGTTAAG
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
123 3 0.03
124 83 0.97
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGACTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:26396452 original size:40 final size:40
Alignment explanation
Indices: 26396325--26396454 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
26396315 TTGCTGGAAA
* * *
26396325 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCAG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTAG
* * *
26396365 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTAG
* *
26396405 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTAG
26396445 TTATATCCGG
1 TTATATCCGG
26396455 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTAG
Found at i:26398073 original size:21 final size:22
Alignment explanation
Indices: 26398020--26398074 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
26398010 GGGGTGTTAC
* *
26398020 ACACACGCCTGTGTGGTCCAAGGG
1 ACACAC-CC-GTGTGGCCCAAGCG
*
26398044 ACACGCCCGTGTGGCCCAA-CG
1 ACACACCCGTGTGGCCCAAGCG
26398065 ACACACCCGT
1 ACACACCCGT
26398075 TCCGTAGGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 10 0.37
22 10 0.37
23 2 0.07
24 5 0.19
ACGTcount: A:0.22, C:0.38, G:0.27, T:0.13
Consensus pattern (22 bp):
ACACACCCGTGTGGCCCAAGCG
Found at i:26398866 original size:56 final size:56
Alignment explanation
Indices: 26398799--26398911 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
26398789 TAGAGTAAGC
*
26398799 ATTACAAACTTAGTAAGTTTGTATAATAGAAACTAAACTTACCAATCCCATTTAAT
1 ATTACAAACTTAGTAAGTTCGTATAATAGAAACTAAACTTACCAATCCCATTTAAT
* **
26398855 ATTACATACTTAGTAAGTTCGTATAATAGAAACTAAACTTACCAATCCTGTTTAAT
1 ATTACAAACTTAGTAAGTTCGTATAATAGAAACTAAACTTACCAATCCCATTTAAT
26398911 A
1 A
26398912 AATCTAATCA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.35
Consensus pattern (56 bp):
ATTACAAACTTAGTAAGTTCGTATAATAGAAACTAAACTTACCAATCCCATTTAAT
Found at i:26398895 original size:29 final size:29
Alignment explanation
Indices: 26398804--26398895 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 29
26398794 TAAGCATTAC
*
26398804 AAACTTAGTAAGTTTGTATAATAGAAACT
1 AAACTTAGTAAGTTCGTATAATAGAAACT
** * * * **
26398833 AAACTTACCAA-TCCCATTTAATA-TTAC-
1 AAACTTAGTAAGT-TCGTATAATAGAAACT
*
26398860 ATACTTAGTAAGTTCGTATAATAGAAACT
1 AAACTTAGTAAGTTCGTATAATAGAAACT
26398889 AAACTTA
1 AAACTTA
26398896 CCAATCCTGT
Statistics
Matches: 42, Mismatches: 17, Indels: 8
0.63 0.25 0.12
Matches are distributed among these distances:
27 15 0.36
28 6 0.14
29 21 0.50
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (29 bp):
AAACTTAGTAAGTTCGTATAATAGAAACT
Found at i:26398910 original size:29 final size:28
Alignment explanation
Indices: 26398822--26398911 Score: 67
Period size: 29 Copynumber: 3.2 Consensus size: 28
26398812 TAAGTTTGTA
*
26398822 TAATAGAAACTAAACTTACCAATCCCATT
1 TAATAGAAACTAAACTTACCAAT-CCGTT
** * ** * *
26398851 TAATA-TTAC-ATACTTAGTAAGTTCGTA
1 TAATAGAAACTAAACTTACCAA-TCCGTT
26398878 TAATAGAAACTAAACTTACCAATCCTGTT
1 TAATAGAAACTAAACTTACCAATCC-GTT
26398907 TAATA
1 TAATA
26398912 AATCTAATCA
Statistics
Matches: 42, Mismatches: 15, Indels: 8
0.65 0.23 0.12
Matches are distributed among these distances:
27 15 0.36
28 7 0.17
29 20 0.48
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (28 bp):
TAATAGAAACTAAACTTACCAATCCGTT
Found at i:26410140 original size:7 final size:7
Alignment explanation
Indices: 26410128--26410154 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
26410118 TCATTCCCTC
26410128 ATTCATA
1 ATTCATA
26410135 ATTCATA
1 ATTCATA
26410142 ATTCATA
1 ATTCATA
26410149 ATTCAT
1 ATTCAT
26410155 CATCCCTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (7 bp):
ATTCATA
Found at i:26418544 original size:9 final size:9
Alignment explanation
Indices: 26418532--26418556 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26418522 TAAGGCAAAT
26418532 AAATTTTTA
1 AAATTTTTA
26418541 AAATTTTTA
1 AAATTTTTA
26418550 AAATTTT
1 AAATTTT
26418557 CATGTATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
AAATTTTTA
Found at i:26428228 original size:43 final size:41
Alignment explanation
Indices: 26428065--26428229 Score: 136
Period size: 43 Copynumber: 3.9 Consensus size: 41
26428055 AGCTCATACA
* * * *
26428065 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCTCAGACATGGTCTTACACGAAATC-AA-ATCG
* * *
26428108 ATGCCACTGT-TCCAAACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCT-CAGACATGGTCTTACACGAAATCAAAT-CG
*** *
26428150 ATGTTGATGTC-CTAGACATGGTCTTACACATAAATCATAAGTCG
1 ATGCCAATGTCTC-AGACATGGTCTTACAC-GAAATCA-AA-TCG
*
26428194 ATGCCAATGTCTCAGACGTGGTCTTACACGAAATCA
1 ATGCCAATGTCTCAGACATGGTCTTACACGAAATCA
26428230 CATATCAAAA
Statistics
Matches: 95, Mismatches: 19, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
41 3 0.03
42 24 0.25
43 39 0.41
44 27 0.28
45 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (41 bp):
ATGCCAATGTCTCAGACATGGTCTTACACGAAATCAAATCG
Found at i:26432929 original size:29 final size:29
Alignment explanation
Indices: 26432891--26432948 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
26432881 CTCTAAATTA
26432891 GGATCCACTAATTTTACCTGAAATTAGAC
1 GGATCCACTAATTTTACCTGAAATTAGAC
*
26432920 GGATCGACTAATTTTACCTGAAATTAGAC
1 GGATCCACTAATTTTACCTGAAATTAGAC
26432949 TCACATATCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (29 bp):
GGATCCACTAATTTTACCTGAAATTAGAC
Found at i:26450945 original size:28 final size:28
Alignment explanation
Indices: 26450880--26450980 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
26450870 ATAGTGAATC
*
26450880 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
26450909 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26450937 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
26450967 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26450981 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26458906 original size:28 final size:28
Alignment explanation
Indices: 26458841--26458941 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
26458831 ATAGTGAATC
*
26458841 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
26458870 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26458898 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
26458928 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26458942 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26460719 original size:43 final size:42
Alignment explanation
Indices: 26460607--26460755 Score: 133
Period size: 43 Copynumber: 3.5 Consensus size: 42
26460597 TGTCACAAAC
* * * * *
26460607 GTCCCAGACGTGGCCTTACATGT-AATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATA-CAATG-CAAT
* * *
26460650 GTCCTAGACAGGGTCTTACACG-AAATCAAATACAATGCTGAT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATACAATGC-AAT
*
26460692 GTCCCAGACATGGTCTTACACGTAAATCATAAGT-CAATGCCAAC
1 GTCCCAGACATGGTCTTACACGTAAATCA-AA-TACAATG-CAAT
*
26460736 GTCCCAGACGTGGTCTTACA
1 GTCCCAGACATGGTCTTACA
26460756 TGAAATAACA
Statistics
Matches: 87, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 25 0.29
43 32 0.37
44 27 0.31
45 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAAATCAAATACAATGCAAT
Found at i:26466780 original size:50 final size:50
Alignment explanation
Indices: 26466662--26467023 Score: 332
Period size: 50 Copynumber: 7.1 Consensus size: 50
26466652 TTGTGAGAAT
* * * *** *
26466662 ACATGTGTAGTACTATGTGCAAGCTACTATGTGTTTAAGATGGTTTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGTC
* *
26466714 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC
* * * * * * * * *
26466764 GCATGTGTAGTACTAAGTGCAGGCTCCTATGCGTACCCGAAAACCTCA-ATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATA-GTTAGGTC
*** * *
26466815 TTGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC
* * * *
26466865 ACGTGTGTAGTCCTAAGTGCAGGCTACAACGTGTACTAGATAGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC
* *
26466915 GCATGTGTAGTACTAAGTACAGGCTAGGCTACTACGTGTATCAGATAGTTAGGTC
1 ACATGTGTAGTACTAAGT----GC-AGGCTACTACGTGTACCAGATAGTTAGGTC
* * * *
26466970 ACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATTGCT-GGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC
26467019 ACATG
1 ACATG
26467024 AGTGCAGCCT
Statistics
Matches: 250, Mismatches: 52, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
49 11 0.04
50 120 0.48
51 37 0.15
52 36 0.14
54 2 0.01
55 44 0.18
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC
Found at i:26466939 original size:151 final size:152
Alignment explanation
Indices: 26466665--26466939 Score: 444
Period size: 151 Copynumber: 1.8 Consensus size: 152
26466655 TGAGAATACA
* * *
26466665 TGTGTAGTACTATGTGCAAGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATAAGATGG-TTTAGGTCACGTGTGTAGTACTAA
* *
26466730 GTGCAGGCTACTACGTATACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTCCTATG
65 GTGCAGGCTACAACGTATACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTACAGGCTCCTATG
26466795 CGTACCCGAAAACCTCAATCTTG
130 CGTACCCGAAAACCTCAATCTTG
* * *
26466818 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTGTAGTCCTAAG
1 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAGTACTAAG
* *
26466882 TGCAGGCTACAACGTGTACTAGATAGTTAGGTCGCATGTGTAGTACTAAGTACAGGCT
66 TGCAGGCTACAACGTATACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTACAGGCT
26466940 AGGCTACTAC
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
151 77 0.69
153 35 0.31
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (152 bp):
TGTGTAGTACTAAGTGCAAGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAGTACTAAG
TGCAGGCTACAACGTATACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTACAGGCTCCTATGC
GTACCCGAAAACCTCAATCTTG
Done.