Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 86 of 292
Found at i:26467270 original size:16 final size:15
Alignment explanation
Indices: 26467249--26467278 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26467239 GAATGGAGTA
26467249 AGTGAAATTATGTAAC
1 AGTGAAATT-TGTAAC
26467265 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
26467279 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.03, G:0.20, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAC
Found at i:26472153 original size:2 final size:2
Alignment explanation
Indices: 26472146--26472177 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
26472136 GATGATATGC
26472146 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26472178 TCTATGAACG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26475052 original size:29 final size:28
Alignment explanation
Indices: 26474925--26475055 Score: 95
Period size: 28 Copynumber: 4.6 Consensus size: 28
26474915 TACTTGATTT
* *
26474925 CGCACACTTAGTGCCACATAATTT-AAGCC
1 CGCACACTTAGTGCCATAT-ATTTCCAG-C
** *** *
26474954 CGCACACACAGTGCCATA-CCCTCGAGC
1 CGCACACTTAGTGCCATATATTTCCAGC
** * *
26474981 TCGCACACCCAGTGCCGTATTTTTCCAGC
1 -CGCACACTTAGTGCCATATATTTCCAGC
*
26475010 TGCACACTTAGTGCCATATATTTCCAGC
1 CGCACACTTAGTGCCATATATTTCCAGC
26475038 ACGCACACTTAGTGCCAT
1 -CGCACACTTAGTGCCAT
26475056 CTCGTCACCG
Statistics
Matches: 79, Mismatches: 19, Indels: 8
0.75 0.18 0.08
Matches are distributed among these distances:
27 2 0.03
28 41 0.52
29 36 0.46
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.24
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTCCAGC
Found at i:26482842 original size:27 final size:29
Alignment explanation
Indices: 26482803--26482872 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
26482793 CCCTCGAGCT
*
26482803 CGCACAC--AGTGCCGTAT-TTTCCAGC-
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
26482828 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
26482857 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
26482873 ATCTCGTCAC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
25 6 0.16
27 9 0.24
28 8 0.21
29 15 0.39
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:26482853 original size:28 final size:28
Alignment explanation
Indices: 26482749--26482872 Score: 96
Period size: 26 Copynumber: 4.6 Consensus size: 28
26482739 TACTCGATTT
* * *
26482749 CGCACACTTAGTGCCACA-TTT-AAGCC
1 CGCACACTTAGTGCCATATTTTCCAGCA
** *** * *
26482775 CGCACACACAGTGCCATACCCTCGAGCT
1 CGCACACTTAGTGCCATATTTTCCAGCA
*
26482803 CGCACAC--AGTGCCGTATTTTCCAGC-
1 CGCACACTTAGTGCCATATTTTCCAGCA
*
26482828 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATAT-TTTCCAGCA
26482857 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
26482873 ATCTCGTCAC
Statistics
Matches: 77, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
25 6 0.08
26 28 0.36
27 10 0.13
28 18 0.23
29 15 0.19
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATTTTCCAGCA
Found at i:26484579 original size:52 final size:50
Alignment explanation
Indices: 26484513--26484808 Score: 229
Period size: 50 Copynumber: 5.9 Consensus size: 50
26484503 ATTGTGAGAA
* ** *
26484513 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAG--TTAGGT
* ** *
26484565 CACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTAGGT
** * ** ** * * *
26484615 CGTATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGA-TAGTT-AGGT
* * * * * *
26484666 CACGTGTGTATTAGTAAGTGCAGGCTACTACGTGTATAAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTAGGT
** * * * *
26484716 CATGTGTGTAGTACTAAGTACAGGCTGCTACGTGTACCAA-ATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAAGATAGTTAGGT
* * *
26484765 CACATGTGTAGTACTAAGTACAGGCTACTATGCGTACTAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAG
26484809 CTTCGGTTAC
Statistics
Matches: 189, Mismatches: 50, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
48 2 0.01
49 38 0.20
50 77 0.41
51 35 0.19
52 37 0.20
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTAGGT
Found at i:26486031 original size:17 final size:14
Alignment explanation
Indices: 26485995--26486022 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26485985 CATTATAACA
26485995 AAAACATATTAGCT
1 AAAACATATTAGCT
26486009 AAAACATATTAGCT
1 AAAACATATTAGCT
26486023 CATAAAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
AAAACATATTAGCT
Found at i:26486697 original size:42 final size:41
Alignment explanation
Indices: 26486651--26486840 Score: 152
Period size: 42 Copynumber: 4.5 Consensus size: 41
26486641 TCAATGCCTC
* * *
26486651 TGTCCCATACAAGGTCTTACACAAA-ATCAGATACGATGCCGA
1 TGTCCCAGACACGGTCTTACACAAATATCA-AT-CGAGGCCGA
* * *
26486693 TGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTG-
1 TGTCCCAGACACGGTCTTACAC--AAATATCAATCGAGGCC-GA
* * ** *
26486736 TGTCCCAGACACGGTCTTGCACGAA-ATCAGATACGTTGCTGA
1 TGTCCCAGACACGGTCTTACACAAATATCA-AT-CGAGGCCGA
* ** * *
26486778 TGTCCCAGACATGGTCTTACTTAAATCTCAATCGAGGCCTA
1 TGTCCCAGACACGGTCTTACACAAATATCAATCGAGGCCGA
26486819 TGTCCCAGACACGGTCTTACAC
1 TGTCCCAGACACGGTCTTACAC
26486841 GATATCTCAG
Statistics
Matches: 114, Mismatches: 26, Indels: 17
0.73 0.17 0.11
Matches are distributed among these distances:
40 3 0.03
41 29 0.25
42 45 0.39
43 28 0.25
44 6 0.05
45 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (41 bp):
TGTCCCAGACACGGTCTTACACAAATATCAATCGAGGCCGA
Found at i:26486822 original size:41 final size:40
Alignment explanation
Indices: 26486692--26486838 Score: 138
Period size: 41 Copynumber: 3.5 Consensus size: 40
26486682 TACGATGCCG
*
26486692 ATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCT
1 ATGTCCCAGACACGGTC-T-TAC-TAAATCTCAATCGAGGCCT
* * **
26486735 GTGTCCCAGACACGGTCTTGCACGAAA--TCAGATACGTTG-CT
1 ATGTCCCAGACACGGTCTT--ACTAAATCTCA-AT-CGAGGCCT
*
26486776 GATGTCCCAGACATGGTCTTACTTAAATCTCAATCGAGGCCT
1 -ATGTCCCAGACACGGTCTTAC-TAAATCTCAATCGAGGCCT
26486818 ATGTCCCAGACACGGTCTTAC
1 ATGTCCCAGACACGGTCTTAC
26486839 ACGATATCTC
Statistics
Matches: 84, Mismatches: 11, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
40 5 0.06
41 31 0.37
42 28 0.33
43 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
ATGTCCCAGACACGGTCTTACTAAATCTCAATCGAGGCCT
Found at i:26486851 original size:85 final size:85
Alignment explanation
Indices: 26486646--26486842 Score: 299
Period size: 85 Copynumber: 2.3 Consensus size: 85
26486636 CAATATCAAT
* * * *
26486646 GCCTCTGTCCCATACAAGGTCTTACACAAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
1 GCCTATGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
26486711 ATACGTAAATCTCAATCGAG
66 ATACGTAAATCTCAATCGAG
* * * *
26486731 GCCTGTGTCCCAGACACGGTCTTGCACGAAATCAGATACGTTGCTGATGTCCCAGACATGGTC-T
1 GCCTATGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
*
26486795 -TACTTAAATCTCAATCGAG
66 ATACGTAAATCTCAATCGAG
26486814 GCCTATGTCCCAGACACGGTCTTACACGA
1 GCCTATGTCCCAGACACGGTCTTACACGA
26486843 TATCTCAGAC
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
83 45 0.44
84 1 0.01
85 56 0.55
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (85 bp):
GCCTATGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
ATACGTAAATCTCAATCGAG
Found at i:26490127 original size:20 final size:20
Alignment explanation
Indices: 26490102--26490160 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
26490092 TAAATATGGT
26490102 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
26490122 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
26490142 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
26490161 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:26490142 original size:11 final size:11
Alignment explanation
Indices: 26490106--26490160 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
26490096 TATGGTATGT
26490106 ATGATATGCAC
1 ATGATATGCAC
* *
26490117 ATGAAATG--T
1 ATGATATGCAC
26490126 ATGATATGCAC
1 ATGATATGCAC
*
26490137 ATGATATG--T
1 ATGATATGCAC
26490146 ATGATATGCAC
1 ATGATATGCAC
26490157 ATGA
1 ATGA
26490161 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26490238 original size:24 final size:24
Alignment explanation
Indices: 26490211--26490329 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
26490201 GAGGAAGTGA
*
26490211 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
26490235 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
26490258 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
26490282 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26490306 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26490330 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26490280 original size:47 final size:48
Alignment explanation
Indices: 26490211--26490329 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
26490201 GAGGAAGTGA
26490211 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
26490258 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
26490306 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26490330 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:26490556 original size:31 final size:31
Alignment explanation
Indices: 26490521--26490584 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
26490511 CGTTTACAGT
26490521 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
26490552 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26490583 AA
1 AA
26490585 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:26498137 original size:25 final size:25
Alignment explanation
Indices: 26498109--26498156 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26498099 TTATACCATG
* * *
26498109 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26498134 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26498157 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26498225 original size:20 final size:20
Alignment explanation
Indices: 26498200--26498258 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
26498190 TAAATATGGT
26498200 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
26498220 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
26498240 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
26498259 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:26498240 original size:11 final size:11
Alignment explanation
Indices: 26498204--26498258 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
26498194 TATGGTATGT
26498204 ATGATATGCAC
1 ATGATATGCAC
* *
26498215 ATGAAATG--T
1 ATGATATGCAC
26498224 ATGATATGCAC
1 ATGATATGCAC
*
26498235 ATGATATG--T
1 ATGATATGCAC
26498244 ATGATATGCAC
1 ATGATATGCAC
26498255 ATGA
1 ATGA
26498259 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26498336 original size:24 final size:24
Alignment explanation
Indices: 26498309--26498427 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
26498299 GAGGAAGTGA
*
26498309 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
26498333 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
26498356 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
26498380 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26498404 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26498428 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26498378 original size:47 final size:48
Alignment explanation
Indices: 26498309--26498427 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
26498299 GAGGAAGTGA
26498309 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
26498356 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
26498404 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26498428 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:26498652 original size:31 final size:31
Alignment explanation
Indices: 26498617--26498680 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
26498607 CGTTTACAGT
26498617 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
26498648 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26498679 AA
1 AA
26498681 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:26512507 original size:58 final size:58
Alignment explanation
Indices: 26512389--26512518 Score: 190
Period size: 58 Copynumber: 2.2 Consensus size: 58
26512379 GTGACGAGAT
* *
26512389 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAAATA
***
26512447 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAAATA
*
26512505 TGGCACTGTGTGTG
1 TGGCACTGAGTGTG
26512519 GGCTTAAATC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
58 64 0.98
59 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (58 bp):
TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAAATA
Found at i:26512511 original size:29 final size:29
Alignment explanation
Indices: 26512389--26512490 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
26512379 GTGACGAGAT
26512389 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
26512418 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
26512447 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
26512476 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
26512491 GAGCTCGAAG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 69 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:26521542 original size:15 final size:15
Alignment explanation
Indices: 26521518--26521547 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26521508 CTAATGTATT
26521518 TTTTGAGGTTTCAGC
1 TTTTGAGGTTTCAGC
*
26521533 TTTTGTGGTTTCAGC
1 TTTTGAGGTTTCAGC
26521548 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.13, G:0.27, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCAGC
Found at i:26523828 original size:40 final size:40
Alignment explanation
Indices: 26523781--26523875 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 40
26523771 CTCGGTATCA
26523781 CACACTTAGTGCCTCA-TATAGCCGAAGCTA-TTCCAATTCG
1 CACACTTAGTGCCT-ATTATAGCCGAAGCTATTTCCAA-TCG
* **
26523821 CACACTTAGT-ACTATTTATAGCCGAAGCTATTTTGAATCG
1 CACACTTAGTGCCTA-TTATAGCCGAAGCTATTTCCAATCG
26523861 CACACTTAGTGCCTA
1 CACACTTAGTGCCTA
26523876 ACATAGTCGA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 37 0.79
41 7 0.15
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (40 bp):
CACACTTAGTGCCTATTATAGCCGAAGCTATTTCCAATCG
Found at i:26524507 original size:13 final size:13
Alignment explanation
Indices: 26524489--26524514 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26524479 TTGATAGAAC
26524489 ACTAAGCAACAAT
1 ACTAAGCAACAAT
26524502 ACTAAGCAACAAT
1 ACTAAGCAACAAT
26524515 CACAAAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.23, G:0.08, T:0.15
Consensus pattern (13 bp):
ACTAAGCAACAAT
Found at i:26537256 original size:24 final size:24
Alignment explanation
Indices: 26537206--26537259 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
26537196 AATCGAATTT
*
26537206 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
26537230 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
26537254 GCACAC
1 GCACAC
26537260 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:26546349 original size:29 final size:29
Alignment explanation
Indices: 26546316--26546446 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
26546306 GTGACGAGAT
26546316 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
26546345 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
26546374 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
26546403 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
26546432 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
26546447 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:26553557 original size:27 final size:28
Alignment explanation
Indices: 26553433--26553602 Score: 115
Period size: 27 Copynumber: 6.3 Consensus size: 28
26553423 TTAGTTTACC
*
26553433 AAATTACTGAAATACCCCCAG--TTGTA
1 AAATTACTGAAATACCCTCAGATTTGTA
* * *
26553459 AAATTACT-AAAGTACCC-CCGCTTTATA
1 AAATTACTGAAA-TACCCTCAGATTTGTA
** *
26553486 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACTGAAATACCCTCAGATTTGTA
* *
26553513 AAATTACCGAACTACCCTCAG-TTTGTA
1 AAATTACTGAAATACCCTCAGATTTGTA
* **
26553540 AAATAACTGAAATACCCTC-GACATGTA
1 AAATTACTGAAATACCCTCAGATTTGTA
* * **
26553567 AAATTA-TCAAAGTACCCTC-GAATTAAA
1 AAATTACTGAAA-TACCCTCAGATTTGTA
26553594 AAATTACTG
1 AAATTACTG
26553603 TTTTACCCTA
Statistics
Matches: 114, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
25 5 0.04
26 18 0.16
27 85 0.75
28 6 0.05
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (28 bp):
AAATTACTGAAATACCCTCAGATTTGTA
Found at i:26553583 original size:54 final size:54
Alignment explanation
Indices: 26553433--26553602 Score: 150
Period size: 54 Copynumber: 3.2 Consensus size: 54
26553423 TTAGTTTACC
* * *
26553433 AAATTACTGAAATACCC-CCAGTTGTAAAATTACTAAAGTACCC-CCGCTTTATA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTAC-AAAGTACCCTCAGCTTTATA
** * * * * *
26553486 AAATTACCCAAATATCCTCGATTTGTAAAATTACCGAACTACCCTCAG-TTTGTA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTA-CAAAGTACCCTCAGCTTTATA
* * ** *
26553540 AAATAACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC-GAATTAAA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTA-CAAAGTACCCTCAGCTTTATA
26553594 AAATTACTG
1 AAATTACTG
26553603 TTTTACCCTA
Statistics
Matches: 91, Mismatches: 22, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
53 15 0.16
54 73 0.80
55 3 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGACTTGTAAAATTACAAAGTACCCTCAGCTTTATA
Found at i:26553586 original size:81 final size:80
Alignment explanation
Indices: 26553433--26553587 Score: 172
Period size: 81 Copynumber: 1.9 Consensus size: 80
26553423 TTAGTTTACC
* * *
26553433 AAATTACTGAAATACCCCCAGTTGTAAAATTACTAAAGTACCCCCGCTTTATAAAATTACCCAAA
1 AAATTACCGAAATACCCCCAGTTGTAAAATAACTAAAGTACCCCCGCTATATAAAATTACCCAAA
*
26553498 TATCCTCGATTTGTA
66 TACCCTCGATTTGTA
* * * * *
26553513 AAATTACCGAACTACCCTCAGTTTGTAAAATAACTGAAA-TACCCTCGAC-ATGTAAAATTA-TC
1 AAATTACCGAAATACCCCCAG-TTGTAAAATAACT-AAAGTACCCCCG-CTATATAAAATTACCC
26553575 AAAGTACCCTCGA
63 AAA-TACCCTCGA
26553588 ATTAAAAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
80 22 0.35
81 36 0.58
82 4 0.06
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.28
Consensus pattern (80 bp):
AAATTACCGAAATACCCCCAGTTGTAAAATAACTAAAGTACCCCCGCTATATAAAATTACCCAAA
TACCCTCGATTTGTA
Found at i:26553609 original size:27 final size:27
Alignment explanation
Indices: 26553579--26554013 Score: 500
Period size: 27 Copynumber: 16.1 Consensus size: 27
26553569 ATTATCAAAG
* * * *
26553579 TACCCTCGAATTAAAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
26553606 TACCCTAGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
26553633 T-CCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* **
26553659 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
26553686 TACCCTCGATTTACATAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
26553713 TACCCTCGATTTACAGAATTTCTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
26553740 TACCCTCGATTGATAGAATTAC-AGTTT
1 TACCCTCGATTTACAGAATTACTA-TTT
*
26553767 TACCCTCGATTTACAGAATCACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
26553794 TACCCTCGATGTACAGAATTA-TCGTTG
1 TACCCTCGATTTACAGAATTACT-ATTT
* *
26553821 TACCCTCGATTTAAAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
26553848 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * * *
26553875 TACCATCGATTAATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
26553902 TACCCTCGATTTAAAAAATTATTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
26553929 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
26553956 TACCCTTGATTTACAGAATTA-TCATTT
1 TACCCTCGATTTACAGAATTACT-ATTT
* * *
26553983 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
26554010 TACC
1 TACC
26554014 TCTAGGGTGT
Statistics
Matches: 346, Mismatches: 55, Indels: 14
0.83 0.13 0.03
Matches are distributed among these distances:
26 25 0.07
27 319 0.92
28 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:26555951 original size:40 final size:40
Alignment explanation
Indices: 26555885--26556051 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
26555875 AAATTGAATG
* * *
26555885 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
26555924 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
26555964 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
26556004 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
26556044 ATATCCGG
1 ATATCCGG
26556052 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:26557596 original size:26 final size:27
Alignment explanation
Indices: 26557567--26557626 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
26557557 CCACATATAT
*
26557567 ATATCTGT-TCTGGTGGCCTAGCCATA
1 ATATCTGTATCTGGTGACCTAGCCATA
* * *
26557593 ATATCTGTATCTGGTGACTTTGTCATA
1 ATATCTGTATCTGGTGACCTAGCCATA
26557620 ATATCTG
1 ATATCTG
26557627 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCATA
Found at i:26559724 original size:27 final size:27
Alignment explanation
Indices: 26559632--26559784 Score: 111
Period size: 27 Copynumber: 5.7 Consensus size: 27
26559622 TTAGTTTACC
*
26559632 AAATTACTAAAATACTCC-CAG-TTGTA
1 AAATTACTGAAATAC-CCTCAGTTTGTA
* * * *
26559658 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTGAAA-TACCCTCAGTTTGTA
** **
26559685 AAATTACCCAAATATTCTC-GATTTGTA
1 AAATTACTGAAATACCCTCAG-TTTGTA
*
26559712 AAATTACTGAAATACCCTCAGTTTGCA
1 AAATTACTGAAATACCCTCAGTTTGTA
*
26559739 AAATTACTGAAATACCCTC-GTCATGTA
1 AAATTACTGAAATACCCTCAGT-TTGTA
*
26559766 AAATTA-TCAAAGTACCCTC
1 AAATTACTGAAA-TACCCTC
26559785 GAATTACAAA
Statistics
Matches: 104, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
25 5 0.05
26 19 0.18
27 75 0.72
28 5 0.05
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAGTTTGTA
Found at i:26559795 original size:54 final size:54
Alignment explanation
Indices: 26559654--26559799 Score: 136
Period size: 54 Copynumber: 2.7 Consensus size: 54
26559644 TACTCCCAGT
* * * * ** *
26559654 TGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAAATATTCTCGATT
1 TGTAAAATTATCAAAGTACCCTCGATTTACAAAATTACCCAAATACCCTCGATA
* * **
26559708 TGTAAAATTACTGAAA-TACCCTC-AGTTTGCAAAATTACTGAAATACCCTCG-TCA
1 TGTAAAATTA-TCAAAGTACCCTCGA-TTTACAAAATTACCCAAATACCCTCGAT-A
*
26559762 TGTAAAATTATCAAAGTACCCTCGAATTACAAAATTAC
1 TGTAAAATTATCAAAGTACCCTCGATTTACAAAATTAC
26559800 AGTTTTACCC
Statistics
Matches: 73, Mismatches: 14, Indels: 10
0.75 0.14 0.10
Matches are distributed among these distances:
53 5 0.07
54 64 0.88
55 4 0.05
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
TGTAAAATTATCAAAGTACCCTCGATTTACAAAATTACCCAAATACCCTCGATA
Found at i:26559808 original size:27 final size:26
Alignment explanation
Indices: 26559778--26560268 Score: 507
Period size: 27 Copynumber: 18.2 Consensus size: 26
26559768 ATTATCAAAG
* *
26559778 TACCCTCGAATTACAAAATTACAGTTT
1 TACCCTCGATTTACAGAATTACA-TTT
*
26559805 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-ATTT
* * *
26559832 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-ATTT
* * * *
26559859 TACCCTCAAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-ATTT
* * *
26559886 TACCCTTGAATTACA-AAGTTACCGTTT
1 TACCCTCGATTTACAGAA-TTA-CATTT
* *
26559913 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-ATTT
26559940 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-ATTT
* *
26559967 TACCCTCGATTTACAAAATTTCTATTT
1 TACCCTCGATTTACAGAATTAC-ATTT
* * *
26559994 TACCCTCAATTTACAGAGTTATCGTTT
1 TACCCTCGATTTACAGAATTA-CATTT
*
26560021 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-ATTT
* *
26560048 TACCTTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTA-CATTT
*
26560075 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-ATTT
26560102 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTA-CATTT
* *
26560129 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-ATTT
* *
26560156 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-ATTT
*
26560183 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-ATTT
*
26560210 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTAC-ATTT
* * *
26560237 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTA-CATTT
26560264 TACCC
1 TACCC
26560269 CTAGGGTGTT
Statistics
Matches: 408, Mismatches: 44, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.01
27 395 0.97
28 7 0.02
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (26 bp):
TACCCTCGATTTACAGAATTACATTT
Found at i:26559825 original size:54 final size:54
Alignment explanation
Indices: 26559778--26560268 Score: 607
Period size: 54 Copynumber: 9.1 Consensus size: 54
26559768 ATTATCAAAG
* * * *
26559778 TACCCTCGAATTACAAAATTACAGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACAGTTTTACCCTCGATTTACAAAATTACTATTT
* * * * * *
26559832 TACCCTTGATTTATAGAATTACTGTTTTACCCTCAAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACAGTTTTACCCTCGATTTACAAAATTACTATTT
* * * * * *
26559886 TACCCTTGAATTACA-AAGTTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAA-TTACAGTTTTACCCTCGATTTACAAAATTACTATTT
*
26559940 TACCCTCGATTTACAGAATTACTA-TTTTACCCTCGATTTACAAAATTTCTATTT
1 TACCCTCGATTTACAGAATTAC-AGTTTTACCCTCGATTTACAAAATTACTATTT
* * * *
26559994 TACCCTCAATTTACAGAGTTATC-GTTTTACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTA-CAGTTTTACCCTCGATTTACAAAATTACTATTT
*
26560048 TACCTTCGATTTACAGAATTATC-GTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTA-CAGTTTTACCCTCGATTTACAAAATTACTATTT
* * *
26560102 TACCCTCGATTTACAGAATTACCA-TTTTACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTA-CAGTTTTACCCTCGATTTACAAAATTACTATTT
* *
26560156 TACCCTCGATTTATAAAATTACTA-TTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-AGTTTTACCCTCGATTTACAAAATTACTATTT
* * * *
26560210 TACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACAGTTTTACCCTCGATTTACAAAATTACTATTT
26560264 TACCC
1 TACCC
26560269 CTAGGGTGTT
Statistics
Matches: 381, Mismatches: 48, Indels: 16
0.86 0.11 0.04
Matches are distributed among these distances:
53 3 0.01
54 375 0.98
55 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACAGTTTTACCCTCGATTTACAAAATTACTATTT
Found at i:26559836 original size:81 final size:81
Alignment explanation
Indices: 26559778--26560268 Score: 614
Period size: 81 Copynumber: 6.1 Consensus size: 81
26559768 ATTATCAAAG
*
26559778 TACCCTCGAATTACAAAATTAC-AGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGAT
1 TACCCTCGAATTACAAAATTACTA-TTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGAT
*
26559842 TTATAGAATTACTGTTT
65 TTATAGAATTACTATTT
* * * * *
26559859 TACCCTCAAATTACAAAATTACTGTTTTACCCTTGAATTACA-AAGTTACCGTTTTACCCTCGAT
1 TACCCTCGAATTACAAAATTACTATTTTACCCTCGATTTACAGAA-TTACTGTTTTACCCTCGAT
*
26559923 TTATAGAATTACTGTTT
65 TTATAGAATTACTATTT
* * * * * *
26559940 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTTCTATTTTACCCTCAATT
1 TACCCTCGAATTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* * *
26560005 TACAGAGTTA-TCGTTT
66 TATAGAATTACT-ATTT
* *
26560021 TACCCTC-AATTTACAGAATTACTATTTTACCTTCGATTTACAGAATTA-TCGTTTTACCCTCGA
1 TACCCTCGAA-TTACAAAATTACTATTTTACCCTCGATTTACAGAATTACT-GTTTTACCCTCGA
* *
26560084 TTTACAAAATTACTATTT
64 TTTATAGAATTACTATTT
* * * * * *
26560102 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTGATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGAATTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
*
26560167 TATAAAATTACTATTT
66 TATAGAATTACTATTT
* *
26560183 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATT
1 TACCCTCGAATTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* *
26560248 TATAAAATTACCATTT
66 TATAGAATTACTATTT
26560264 TACCC
1 TACCC
26560269 CTAGGGTGTT
Statistics
Matches: 360, Mismatches: 41, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
80 5 0.01
81 350 0.97
82 5 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCGAATTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
TATAGAATTACTATTT
Found at i:26560549 original size:27 final size:26
Alignment explanation
Indices: 26560505--26560556 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26560495 CTCGCTACAA
*
26560505 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
26560532 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
26560557 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:26560783 original size:6 final size:6
Alignment explanation
Indices: 26560773--26560876 Score: 63
Period size: 6 Copynumber: 16.8 Consensus size: 6
26560763 TTGCATTCAC
* * *
26560773 ATTCTG GTTCTG ATTCT- ATTACCTG ATAT-TG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG AT--TCTG
* * *
26560823 ATTTTG ATTTTG ATTCTG ATTCTG ATTCT- ATCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
26560872 ATTCT
1 ATTCT
26560877 CATTTTGACT
Statistics
Matches: 77, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
5 7 0.09
6 58 0.75
7 6 0.08
8 5 0.06
9 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:26560815 original size:31 final size:30
Alignment explanation
Indices: 26560773--26560876 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 30
26560763 TTGCATTCAC
*
26560773 ATTCTGGTTCTGATTCTATTACCTGATATTG
1 ATTCTGATTCTGATTCTATTACCTGAT-TTG
* *
26560804 ATTCTGATTCTG-TCACCTAATT--TTGATTTTG
1 ATTCTGATTCTGAT--TCT-ATTACCTGA-TTTG
*
26560835 ATTCTGATTCTGATTCTATCACCTGATTCTG
1 ATTCTGATTCTGATTCTATTACCTGATT-TG
26560866 ATTCTGATTCT
1 ATTCTGATTCT
26560877 CATTTTGACT
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
29 2 0.03
30 5 0.08
31 45 0.76
32 4 0.07
33 3 0.05
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTATTACCTGATTTG
Found at i:26560840 original size:25 final size:25
Alignment explanation
Indices: 26560780--26560840 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
26560770 CACATTCTGG
* * *
26560780 TTCTGATTCTATTACCTGATATTGA
1 TTCTGATTCTGTCACCTAATATTGA
*
26560805 TTCTGATTCTGTCACCTAATTTTGA
1 TTCTGATTCTGTCACCTAATATTGA
*
26560830 TTTTGATTCTG
1 TTCTGATTCTG
26560841 ATTCTGATTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (25 bp):
TTCTGATTCTGTCACCTAATATTGA
Found at i:26560843 original size:37 final size:37
Alignment explanation
Indices: 26560802--26560876 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
26560792 TACCTGATAT
* * *
26560802 TGATTCTGATTCTGTCACCTAATTTTGATTTTGATTC
1 TGATTCTGATTCTATCACCTAATTCTGATTCTGATTC
*
26560839 TGATTCTGATTCTATCACCTGATTCTGATTCTGATTC
1 TGATTCTGATTCTATCACCTAATTCTGATTCTGATTC
26560876 T
1 T
26560877 CATTTTGACT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (37 bp):
TGATTCTGATTCTATCACCTAATTCTGATTCTGATTC
Found at i:26569684 original size:28 final size:28
Alignment explanation
Indices: 26569644--26569697 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
26569634 ACTCAATAAG
26569644 ATTTAATTCTATGTCTCATTCATCACTT
1 ATTTAATTCTATGTCTCATTCATCACTT
26569672 ATTTAATTCTATGTCTCATTCATCAC
1 ATTTAATTCTATGTCTCATTCATCAC
26569698 CTAATTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.26, C:0.22, G:0.04, T:0.48
Consensus pattern (28 bp):
ATTTAATTCTATGTCTCATTCATCACTT
Found at i:26569702 original size:24 final size:25
Alignment explanation
Indices: 26569647--26569703 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 25
26569637 CAATAAGATT
*
26569647 TAATTCTATGTCTCATTCATCACTTATT
1 TAATTCTATGTCTCATTCATCAC---TC
26569675 TAATTCTATGTCTCATTCATCAC-C
1 TAATTCTATGTCTCATTCATCACTC
26569699 TAATT
1 TAATT
26569704 TCATTTCTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 5 0.18
28 23 0.82
ACGTcount: A:0.26, C:0.23, G:0.04, T:0.47
Consensus pattern (25 bp):
TAATTCTATGTCTCATTCATCACTC
Found at i:26570639 original size:55 final size:53
Alignment explanation
Indices: 26570514--26570700 Score: 232
Period size: 55 Copynumber: 3.5 Consensus size: 53
26570504 AACTTACCAT
* * *
26570514 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA-TGAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATTGAACTCATCAA
* *
26570567 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATTGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATTG-AACTCATCAA
* * * * *
26570622 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATTGAACTCATCAA
*
26570676 TGCCATGCCTTGGCATGGTCTTACA
1 TGCCATGCCTTGACATGGTCTTACA
26570701 AGATATCCTT
Statistics
Matches: 116, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 2 0.02
53 34 0.29
54 34 0.29
55 44 0.38
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATTGAACTCATCAA
Found at i:26570818 original size:45 final size:45
Alignment explanation
Indices: 26570759--26570844 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
26570749 CCTTAATCAA
* *
26570759 TGCCGATGCCATGTCTTGACATGGTTTTACACGGGATCCTTGCCT
1 TGCCAATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCT
* *
26570804 TGCCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 TGCCAATGCCATGTCTTGACATGGTCTTACACGGGATCCTT
26570845 AACCGTCAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (45 bp):
TGCCAATGCCATGTCTTGACATGGTCTTACACGGGATCCTTGCCT
Found at i:26570898 original size:44 final size:44
Alignment explanation
Indices: 26570849--26570934 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
26570839 ATCCTTAACC
* *
26570849 GTCAATTCCTCCTTAAATGCCATGTTATAAACATGGAATTTTTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGAATTTTTT
* * *
26570893 GTCAATTCTTCCTTAATTGCCATGGTACAACCATGGAATTTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGAATTTT
26570935 AGATATCAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.40
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTACAAACATGGAATTTTTT
Found at i:26572758 original size:40 final size:40
Alignment explanation
Indices: 26572700--26572848 Score: 201
Period size: 40 Copynumber: 3.7 Consensus size: 40
26572690 TGAATGATAC
* * *
26572700 CCGGGCTAAGTCCTGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
26572740 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * *
26572780 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * *
26572820 CCAGGTTAAGACCCGAAGGCAATTGTGCT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT
26572849 TGTGATTGTA
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 96 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:26578835 original size:20 final size:20
Alignment explanation
Indices: 26578812--26578926 Score: 104
Period size: 20 Copynumber: 5.8 Consensus size: 20
26578802 AAGTCACCAA
26578812 TAATGCAGACAAGCTGCCAG
1 TAATGCAGACAAGCTGCCAG
** * *
26578832 TAATGTGGTCAAGCTACCAG
1 TAATGCAGACAAGCTGCCAG
* * * *
26578852 TAATGCAAATAAACTGCTAG
1 TAATGCAGACAAGCTGCCAG
*
26578872 TAGTGCAGACAAGCTGCCAG
1 TAATGCAGACAAGCTGCCAG
* * * *
26578892 TAATGTAGATAAACTGGCAG
1 TAATGCAGACAAGCTGCCAG
*
26578912 TGATGCAGACAAGCT
1 TAATGCAGACAAGCT
26578927 ACCTATAATA
Statistics
Matches: 69, Mismatches: 26, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 69 1.00
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (20 bp):
TAATGCAGACAAGCTGCCAG
Found at i:26578885 original size:40 final size:40
Alignment explanation
Indices: 26578841--26578929 Score: 119
Period size: 40 Copynumber: 2.2 Consensus size: 40
26578831 GTAATGTGGT
26578841 CAAGCTACCAGTAATGCAAATAAACT-GCTAGT-AGTGCAGA
1 CAAGCTACCAGTAATGCAAATAAACTGGC-AGTGA-TGCAGA
* * *
26578881 CAAGCTGCCAGTAATGTAGATAAACTGGCAGTGATGCAGA
1 CAAGCTACCAGTAATGCAAATAAACTGGCAGTGATGCAGA
26578921 CAAGCTACC
1 CAAGCTACC
26578930 TATAATATGG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 40 0.93
41 3 0.07
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (40 bp):
CAAGCTACCAGTAATGCAAATAAACTGGCAGTGATGCAGA
Found at i:26580088 original size:48 final size:48
Alignment explanation
Indices: 26580036--26580277 Score: 313
Period size: 48 Copynumber: 5.0 Consensus size: 48
26580026 ATGCTAAATG
* * *
26580036 TGTGCCTGTGTAAGAACATGTCTGGGACATGACATCGGCGATGATATA
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATA
*
26580084 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATA
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATA
* * *
26580132 TGTGTCTGTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATA
* * ** * * *
26580180 TTTGCCAGTGTAAGACCATGTCTGGGACATGATATCCATGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATA
** * * *
26580228 TGTGCCAATGTAAGACCATGTCTGAGACATGGCATCAATGATGATATA
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATA
26580276 TG
1 TG
26580278 GATTCATGTA
Statistics
Matches: 173, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 173 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATA
Found at i:26580287 original size:48 final size:48
Alignment explanation
Indices: 26580044--26580310 Score: 270
Period size: 48 Copynumber: 5.6 Consensus size: 48
26580034 TGTGTGCCTG
* * * * **
26580044 TGTAAGAACATGTCTGGGACATGACATCGGCGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGTCAA
* **
26580092 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGTCAA
* * * * *
26580140 TGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGTTTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGTCAA
** * * * *
26580188 TGTAAGACCATGTCTGGGACATGATATCCATGATGATATGTGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGTCAA
* * *
26580236 TGTAAGACCATGTCTGAGACATGGCATCAATGATGATATATG-GATTC-A
1 TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTG--TCAA
*
26580284 TGTAAGACCAAGT-TGGGGACATGGCAT
1 TGTAAGACCATGTCT-GGGACATGGCAT
26580311 TGGTACTTTA
Statistics
Matches: 192, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
47 2 0.01
48 189 0.98
49 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGTCAA
Found at i:26580303 original size:144 final size:144
Alignment explanation
Indices: 26580033--26580310 Score: 364
Period size: 144 Copynumber: 1.9 Consensus size: 144
26580023 ACCATGCTAA
* ** **
26580033 ATGTGTGCCTGTGTAAGAACATGTCTGGGACATGACATCGGCGATGATATATGTGCCTGTGTAAG
1 ATGTGTGCCAGTGTAAGAACATGTCTGGGACATGACATCCACGATGATATATGTGCCAATGTAAG
* ** * *
26580098 ACCATGTCTGGGACATGGCATCGGCGATGATATATGTGTCTGTGTAAGACCATGTCTGGGACATG
66 ACCATGTCTGAGACATGGCATCAACGATGATATATGTGTCTATGTAAGACCAAGTCTGGGACATG
26580163 GCATCGACAATGAT
131 GCATCGACAATGAT
* * * * *
26580177 ATGTTTGCCAGTGTAAGACCATGTCTGGGACATGATATCCATGATGATATGTGTGCCAATGTAAG
1 ATGTGTGCCAGTGTAAGAACATGTCTGGGACATGACATCCACGATGATATATGTGCCAATGTAAG
*
26580242 ACCATGTCTGAGACATGGCATCAATGATGATATATG-GAT-TCATGTAAGACCAAGT-TGGGGAC
66 ACCATGTCTGAGACATGGCATCAACGATGATATATGTG-TCT-ATGTAAGACCAAGTCT-GGGAC
26580304 ATGGCAT
128 ATGGCAT
26580311 TGGTACTTTA
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
143 3 0.03
144 112 0.97
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (144 bp):
ATGTGTGCCAGTGTAAGAACATGTCTGGGACATGACATCCACGATGATATATGTGCCAATGTAAG
ACCATGTCTGAGACATGGCATCAACGATGATATATGTGTCTATGTAAGACCAAGTCTGGGACATG
GCATCGACAATGAT
Found at i:26582597 original size:18 final size:18
Alignment explanation
Indices: 26582574--26582619 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
26582564 TTGCTGTAAC
26582574 AGTAAACAATGCAATAAT
1 AGTAAACAATGCAATAAT
* *
26582592 AGTAAACAGTGCAGTAAT
1 AGTAAACAATGCAATAAT
*
26582610 AGTAAGCAAT
1 AGTAAACAAT
26582620 ATGCAAGTCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.22
Consensus pattern (18 bp):
AGTAAACAATGCAATAAT
Found at i:26583012 original size:27 final size:27
Alignment explanation
Indices: 26582996--26583167 Score: 281
Period size: 27 Copynumber: 6.4 Consensus size: 27
26582986 CTTACCATAA
26582996 AAGGGCAAAATAGTCATTTTACCCCAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
26583023 AAGGGCAAAATAGTCATTTTACCCCAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
* *
26583050 AAGGGCAAAACAATCATTTTACCCCAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
*
26583077 AAGGGAAAAATAGTCATTTTACCCCAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
*
26583104 AAGGGCAGAATAGTCATTTTACCCCAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
* *
26583131 AAGGGCAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAATAGTCATTTTACCCCAT
*
26583158 AAGGGTAAAA
1 AAGGGCAAAA
26583168 CGGTCATTCC
Statistics
Matches: 134, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (27 bp):
AAGGGCAAAATAGTCATTTTACCCCAT
Found at i:26583110 original size:81 final size:81
Alignment explanation
Indices: 26582966--26583167 Score: 305
Period size: 81 Copynumber: 2.5 Consensus size: 81
26582956 ATATACAACA
* * * * * *
26582966 CATAGGGGTAAAACAATCATCTTACCATAAAAGGGCAAAATAGTCATTTTACCCCATAAGGGCAA
1 CATAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAATAGTCATTTTACCCCATAAGGGCAA
26583031 AATAGTCATTTTACCC
66 AATAGTCATTTTACCC
* *
26583047 CATAAGGGCAAAACAATCATTTTACCCCATAAGGGAAAAATAGTCATTTTACCCCATAAGGGCAG
1 CATAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAATAGTCATTTTACCCCATAAGGGCAA
26583112 AATAGTCATTTTACCC
66 AATAGTCATTTTACCC
* * *
26583128 CATAAGGGCAAAACAGTCATTTTACCTCATAAGGGTAAAA
1 CATAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAA
26583168 CGGTCATTCC
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 110 1.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (81 bp):
CATAAGGGCAAAACAATCATTTTACCACATAAGGGAAAAATAGTCATTTTACCCCATAAGGGCAA
AATAGTCATTTTACCC
Found at i:26587030 original size:43 final size:43
Alignment explanation
Indices: 26586980--26587124 Score: 143
Period size: 43 Copynumber: 3.4 Consensus size: 43
26586970 TCCCATATAT
* * * *
26586980 GGTCTTACATGTTATC-ACATATTGATGCCATTGTCCTAGACAG
1 GGTCTTACATGTAATCGAC-TAATGATGCCAATGTCCCAGACAG
*
26587023 GGTCTTACATGTAATCGACTAATGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATCGACTAATGATGCCAATGTCCCAGACAG
* * * *
26587066 GGTCTTACACGTAATC-A-TAATACAATGCAAATGTCCCAGACAT
1 GGTCTTACATGTAATCGACTAAT--GATGCCAATGTCCCAGACAG
* *
26587109 AGTCTTACACGTAATC
1 GGTCTTACATGTAATC
26587125 TCATCTCAAT
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
41 4 0.04
42 1 0.01
43 83 0.92
44 2 0.02
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
GGTCTTACATGTAATCGACTAATGATGCCAATGTCCCAGACAG
Found at i:26592427 original size:30 final size:28
Alignment explanation
Indices: 26592391--26592491 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
26592381 GACAAGATTG
* * *
26592391 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--AATTATATA
*
26592421 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
26592449 GCACTAAGTGTGCGAGTTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTAAT-TATATA
26592478 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26592492 GATTCACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
28 26 0.41
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:26597079 original size:43 final size:43
Alignment explanation
Indices: 26597009--26597157 Score: 133
Period size: 43 Copynumber: 3.5 Consensus size: 43
26596999 CAATGCCAAC
* *** * *
26597009 GTCCTAGACATGGTCTTACATGTAATTCAATATCGATCCCTCT
1 GTCCCAGACATGGTCTTACACAAAATTCAATATCGATGCCTAT
* * * *
26597052 GTCCCAGACAGGGTCTTACACAAAATTCGATA-CGATGTCGAT
1 GTCCCAGACATGGTCTTACACAAAATTCAATATCGATGCCTAT
* * *
26597094 GTCCCAGACATGGTCTTATACATAAATCTCAAT-T-GAGGCCTGT
1 GTCCCAGACATGGTCTTACACA-AAAT-TCAATATCGATGCCTAT
*
26597137 GTCCCAAACATGGTCTTACAC
1 GTCCCAGACATGGTCTTACAC
26597158 GATGTCATAG
Statistics
Matches: 84, Mismatches: 19, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 26 0.31
43 54 0.64
44 4 0.05
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACAAAATTCAATATCGATGCCTAT
Found at i:26599640 original size:12 final size:12
Alignment explanation
Indices: 26599623--26599648 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26599613 ACATTTACTG
26599623 AATTTCGCATAC
1 AATTTCGCATAC
26599635 AATTTCGCATAC
1 AATTTCGCATAC
26599647 AA
1 AA
26599649 CTATTTATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (12 bp):
AATTTCGCATAC
Found at i:26603978 original size:28 final size:28
Alignment explanation
Indices: 26603940--26604046 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
26603930 GAATCATTCG
* *
26603940 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
26603968 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
26603996 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
26604024 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
26604047 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:26609041 original size:57 final size:57
Alignment explanation
Indices: 26608971--26609156 Score: 293
Period size: 57 Copynumber: 3.2 Consensus size: 57
26608961 GATCTCATTT
*
26608971 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
* *
26609030 CACACACAGTGCCTCAACAACCGATCTTACACACACAGTGCTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
* * *
26609087 CACATACAGTGCCTCAACAACCGATCTCGCACACACAGTGC-TGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
26609143 CACACACAGTGCCT
1 CACACACAGTGCCT
26609157 ATGTTCACTT
Statistics
Matches: 118, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
56 26 0.22
57 85 0.72
59 7 0.06
ACGTcount: A:0.29, C:0.35, G:0.18, T:0.18
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
Found at i:26609125 original size:29 final size:29
Alignment explanation
Indices: 26608971--26609127 Score: 120
Period size: 29 Copynumber: 5.4 Consensus size: 29
26608961 GATCTCATTT
* *
26608971 CACACACTTAGTGCCCCAACAACCGATCTTG
1 CACACAC--AGTGCCTCAACAACCGATCTCG
***** * *
26609002 CACACACAGTG-CTTGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
**
26609030 CACACACAGTGCCTCAACAACCGATCTTA
1 CACACACAGTGCCTCAACAACCGATCTCG
**** * *
26609059 CACACACAGTG-CTCGGTTACGGAACTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
*
26609087 CACATACAGTGCCTCAACAACCGATCTCG
1 CACACACAGTGCCTCAACAACCGATCTCG
26609116 CACACACAGTGC
1 CACACACAGTGC
26609128 TGGTTACGGA
Statistics
Matches: 90, Mismatches: 34, Indels: 6
0.69 0.26 0.05
Matches are distributed among these distances:
28 38 0.42
29 45 0.50
31 7 0.08
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.18
Consensus pattern (29 bp):
CACACACAGTGCCTCAACAACCGATCTCG
Found at i:26611160 original size:28 final size:28
Alignment explanation
Indices: 26611122--26611223 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
26611112 GAATCATTCG
*
26611122 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
* *
26611150 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
26611178 ATATTTCGTACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
26611206 ATATTTCGTACACTAAGT
1 ATATTTCGCACACTAAGT
26611224 ACCATATTTG
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGTCATTCTCA
Found at i:26616205 original size:30 final size:30
Alignment explanation
Indices: 26616171--26616231 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
26616161 TCCTTAACTC
*
26616171 AAACTTTTTCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
26616201 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
26616231 A
1 A
26616232 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:26620074 original size:30 final size:30
Alignment explanation
Indices: 26620040--26620100 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
26620030 TCCTTAACTC
26620040 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
26620070 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
26620100 A
1 A
26620101 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:26623308 original size:15 final size:15
Alignment explanation
Indices: 26623288--26623318 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26623278 AAATATGAAA
26623288 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
26623303 GATATGTTTTGTATT
1 GATATGTTTTGGATT
26623318 G
1 G
26623319 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:26623883 original size:45 final size:44
Alignment explanation
Indices: 26623834--26623965 Score: 139
Period size: 44 Copynumber: 3.0 Consensus size: 44
26623824 AGGATTTCTG
26623834 ATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
1 ATATGTGTT-TCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * * *
26623879 ATATGTGGTTACGAGTAAGA-CATGTCTGGGACATCGGCATCG-T
1 ATATGT-GTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * *
26623922 AT-T-TGATTCGTGTAAGACC-CTGTCTGGGACAGTGGCATTGAT
1 ATATGTGTTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT
26623964 AT
1 AT
26623966 GAGATAGCAT
Statistics
Matches: 72, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
40 10 0.14
41 18 0.25
42 4 0.06
43 3 0.04
44 20 0.28
45 14 0.19
46 3 0.04
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (44 bp):
ATATGTGTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
Found at i:26623959 original size:41 final size:43
Alignment explanation
Indices: 26623834--26623965 Score: 130
Period size: 41 Copynumber: 3.0 Consensus size: 43
26623824 AGGATTTCTG
*
26623834 ATATGTGTTCTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT
1 ATATGTGAT-TCGTGTAAGACC-CTGTCTGGGACA-TGGCATCGAT
* * *
26623879 ATATGTGGTTACGAGTAAGA-CATGTCTGGGACATCGGCATCG-T
1 ATATGTGATT-CGTGTAAGACCCTGTCTGGGACAT-GGCATCGAT
*
26623922 AT-T-TGATTCGTGTAAGACCCTGTCTGGGACAGTGGCATTGAT
1 ATATGTGATTCGTGTAAGACCCTGTCTGGGACA-TGGCATCGAT
26623964 AT
1 AT
26623966 GAGATAGCAT
Statistics
Matches: 74, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
40 8 0.11
41 22 0.30
42 5 0.07
43 4 0.05
44 19 0.26
45 16 0.22
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
ATATGTGATTCGTGTAAGACCCTGTCTGGGACATGGCATCGAT
Found at i:26628233 original size:29 final size:29
Alignment explanation
Indices: 26628176--26628271 Score: 153
Period size: 29 Copynumber: 3.4 Consensus size: 29
26628166 GTAAGTTCGT
*
26628176 ACACTTAGTGCT-TA-ATATTCAAACCCGC
1 ACACTTAGTGCTATACA-ATTCAAACTCGC
26628204 ACACTTAGTGCTATACAATTCAAACTCGC
1 ACACTTAGTGCTATACAATTCAAACTCGC
26628233 ACACTTAGTGCTATACAATT-AAACTCGC
1 ACACTTAGTGCTATACAATTCAAACTCGC
26628261 ACACTTAGTGC
1 ACACTTAGTGC
26628272 CAATCTCATT
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
28 31 0.48
29 33 0.51
30 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.28
Consensus pattern (29 bp):
ACACTTAGTGCTATACAATTCAAACTCGC
Found at i:26635249 original size:29 final size:29
Alignment explanation
Indices: 26635208--26635287 Score: 144
Period size: 29 Copynumber: 2.8 Consensus size: 29
26635198 AATGCTTAAT
*
26635208 ATTCAAACCCGCACACTTAGTGCTATACA
1 ATTCAAACTCGCACACTTAGTGCTATACA
26635237 ATTCAAACTCGCACACTTAGTGCTATACA
1 ATTCAAACTCGCACACTTAGTGCTATACA
26635266 ATT-AAACTCGCACACTTAGTGC
1 ATTCAAACTCGCACACTTAGTGC
26635288 CAATCTCATT
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
28 19 0.38
29 31 0.62
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (29 bp):
ATTCAAACTCGCACACTTAGTGCTATACA
Found at i:26635826 original size:20 final size:20
Alignment explanation
Indices: 26635801--26635842 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
26635791 GAATAAGTTT
26635801 AATTTGAATTTTTTTAGATC
1 AATTTGAATTTTTTTAGATC
*
26635821 AATTTGAATTTTTTTAGGTC
1 AATTTGAATTTTTTTAGATC
26635841 AA
1 AA
26635843 GAACCAAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (20 bp):
AATTTGAATTTTTTTAGATC
Found at i:26638773 original size:43 final size:42
Alignment explanation
Indices: 26638612--26638776 Score: 172
Period size: 43 Copynumber: 3.9 Consensus size: 42
26638602 ATAGCTCGTA
* * *
26638612 CAATGCC-ATATCCCAGATATGGTCTTACATGTCATCACATAT
1 CAATGCCAATATCCCAGACATGGTCTTACATGTAATCATA-AT
* * * ** *
26638654 CGATGCCACTATCCCAGACAGGGTCTTACACATAAACGATTAA-
1 CAATGCCAATATCCCAGACATGGTCTTACATGTAATC-A-TAAT
* *
26638697 CGATGCCAATGTCCCAGACATGGTCTTACATGTAATCATAAT
1 CAATGCCAATATCCCAGACATGGTCTTACATGTAATCATAAT
*
26638739 GCAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 -CAATGCCAATATCCCAGACATGGTCTTACATGTAATC
26638777 TCATCTCAGT
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
41 3 0.03
42 7 0.07
43 89 0.87
44 2 0.02
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
CAATGCCAATATCCCAGACATGGTCTTACATGTAATCATAAT
Found at i:26642033 original size:43 final size:42
Alignment explanation
Indices: 26641942--26642049 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
26641932 TGAGGTTATG
* *
26641942 TGTAAGACCATATCTGGGATATGGCATAGATATGAGACTTAC
1 TGTAAGACCATATCTGGCATATGGCATAGATACGAGACTTAC
* * * *
26641984 TATAAGACCATAGCTGGCCTATTGGCATCGATACGAGA-TTAC
1 TGTAAGACCATATCTGGCATA-TGGCATAGATACGAGACTTAC
*
26642026 ATGTAAGACCATATCTGGGATATG
1 -TGTAAGACCATATCTGGCATATG
26642050 ACATTGGTAT
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 23 0.43
43 31 0.57
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGCATATGGCATAGATACGAGACTTAC
Found at i:26645517 original size:40 final size:40
Alignment explanation
Indices: 26645325--26645510 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
26645315 TCGAATGATG
* * *
26645325 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
26645365 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26645405 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26645445 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26645486 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26645511 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26645517 original size:80 final size:80
Alignment explanation
Indices: 26645325--26645543 Score: 254
Period size: 80 Copynumber: 2.8 Consensus size: 80
26645315 TCGAATGATG
* * **
26645325 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
26645389 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
26645405 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
26645468 TTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTA-AA
* **
26645486 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
26645544 TACGTGATTC
Statistics
Matches: 120, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
79 17 0.14
80 93 0.77
81 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:26653623 original size:40 final size:40
Alignment explanation
Indices: 26653431--26653616 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 40
26653421 TCGAATAATG
* * * * *
26653431 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
26653471 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
*
26653511 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
* ** *
26653551 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
26653592 -CCGGGCTATGACCCGAAGGCATTTG
1 TCCGGACTAAGACCCGAAGGCATTTG
26653617 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
40 119 0.94
41 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26666441 original size:39 final size:39
Alignment explanation
Indices: 26666394--26666559 Score: 253
Period size: 39 Copynumber: 4.3 Consensus size: 39
26666384 TATATGAGAT
26666394 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
26666433 TGGAAATATATCCGGACATGAGGTTCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* *
26666472 TGGAAATATATCCAGACATGAGGT-CGCAAGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* * **
26666510 AGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
26666549 TGGAAAAATAT
1 TGGAAATATAT
26666560 TCGGGTTAAA
Statistics
Matches: 115, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 34 0.30
39 81 0.70
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:26666525 original size:77 final size:78
Alignment explanation
Indices: 26666394--26666559 Score: 253
Period size: 77 Copynumber: 2.1 Consensus size: 78
26666384 TATATGAGAT
* * * *
26666394 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTTC
1 TGGAAATATATCCAGACATGAGGTCCGCAAGCTATATGCAGGAAATATATCCGGACATGAGGTCC
*
26666459 GCAGGCTATATGC
66 GCAGGCTACATGC
*
26666472 TGGAAATATATCCAGACATGAGGT-CGCAAGCTATATGCAGGAAATATATCCGGACTTGAGGTCC
1 TGGAAATATATCCAGACATGAGGTCCGCAAGCTATATGCAGGAAATATATCCGGACATGAGGTCC
*
26666536 GCAGGCTACGTGC
66 GCAGGCTACATGC
*
26666549 TGGAAAAATAT
1 TGGAAATATAT
26666560 TCGGGTTAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
77 57 0.71
78 23 0.29
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (78 bp):
TGGAAATATATCCAGACATGAGGTCCGCAAGCTATATGCAGGAAATATATCCGGACATGAGGTCC
GCAGGCTACATGC
Found at i:26672214 original size:40 final size:40
Alignment explanation
Indices: 26672169--26672335 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
26672159 CGGAATATAA
26672169 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
26672209 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
26672249 CCGGATAGAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
26672289 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
26672328 CCGGATAT
1 CCGGATAT
26672336 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26672319 original size:80 final size:79
Alignment explanation
Indices: 26672185--26672334 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 79
26672175 ATAATCACGT
*
26672185 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
26672250 CGGATAGAGCCACTA
65 CGGATAGAGCCACTA
* * ** * *
26672265 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
26672328 CCGGATA
64 CCGGATA
26672335 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAGAGCCACTA
Found at i:26673603 original size:58 final size:58
Alignment explanation
Indices: 26673531--26673642 Score: 147
Period size: 58 Copynumber: 1.9 Consensus size: 58
26673521 CCCCCTTTTC
26673531 CCTTAGTAATTTCGGCCAAGAAGAT-GAGAAAGGATGAACAAATTTTTTTCTTTTCTTT
1 CCTTAGTAATTTCGGCCAAGAAGATGGAG-AAGGATGAACAAATTTTTTTCTTTTCTTT
*** **
26673589 CCTTAGTACA-TTCGGCCAAGCCTATGGAGAAGGATGAACATTTTTTTTTCTTTT
1 CCTTAGTA-ATTTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTTCTTTT
26673643 TTTTTTTTTC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
58 43 0.91
59 4 0.09
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (58 bp):
CCTTAGTAATTTCGGCCAAGAAGATGGAGAAGGATGAACAAATTTTTTTCTTTTCTTT
Found at i:26677105 original size:77 final size:78
Alignment explanation
Indices: 26676978--26677127 Score: 275
Period size: 77 Copynumber: 1.9 Consensus size: 78
26676968 TATATGAGAT
26676978 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAATATATCC-GACATGAGGTCC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTCC
26677042 GCAGGCTATATGC
66 GCAGGCTATATGC
* *
26677055 TGGAAATATATCCGGACATGATGTCCGCAGGCTATATGCTGGAAATATATCCGGACTTGAGGTCC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTCC
26677120 GCAGGCTA
66 GCAGGCTA
26677128 CGCGTTGGAA
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
77 51 0.73
78 19 0.27
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (78 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAATATATCCGGACATGAGGTCC
GCAGGCTATATGC
Found at i:26677147 original size:39 final size:39
Alignment explanation
Indices: 26676978--26677127 Score: 275
Period size: 39 Copynumber: 3.9 Consensus size: 39
26676968 TATATGAGAT
26676978 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
26677017 TGGAAATATATCC-GACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
26677055 TGGAAATATATCCGGACATGATGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
26677094 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTA
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTA
26677128 CGCGTTGGAA
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
38 38 0.36
39 69 0.64
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:26677162 original size:78 final size:77
Alignment explanation
Indices: 26676978--26677165 Score: 216
Period size: 77 Copynumber: 2.4 Consensus size: 77
26676968 TATATGAGAT
* * * *
26676978 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAATATATCCGACATGAGGTCCG
1 TGGAAAAATATCCGGACATAAAGACCGCAGGCTATATGCTGGAAATATATCCGACATGAGGTCCG
* *
26677043 CAGGCTATATGC
66 CAGGCTACACGC
* * * * *
26677055 TGGAAATATATCCGGACATGATGTCCGCAGGCTATATGCTGGAAATATATCCGGACTTGAGGTCC
1 TGGAAAAATATCCGGACATAAAGACCGCAGGCTATATGCTGGAAATATATCC-GACATGAGGTCC
* *
26677120 GCAGGCTACGCGT
65 GCAGGCTACACGC
**
26677133 TGGAAAAATATCCGG-GTTAAAGACTCGCAGGCT
1 TGGAAAAATATCCGGACATAAAGAC-CGCAGGCT
26677166 TACGCTAGTA
Statistics
Matches: 97, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
77 55 0.57
78 42 0.43
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (77 bp):
TGGAAAAATATCCGGACATAAAGACCGCAGGCTATATGCTGGAAATATATCCGACATGAGGTCCG
CAGGCTACACGC
Found at i:26681683 original size:28 final size:27
Alignment explanation
Indices: 26681620--26681689 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
26681610 ATAGTGAGTC
26681620 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
26681647 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
26681675 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26681690 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:26689494 original size:28 final size:27
Alignment explanation
Indices: 26689431--26689500 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
26689421 ATAGTGAGTC
26689431 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
26689458 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
26689486 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26689501 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:26691315 original size:38 final size:38
Alignment explanation
Indices: 26691224--26691413 Score: 238
Period size: 38 Copynumber: 4.9 Consensus size: 38
26691214 GAATCCAGTC
* * *
26691224 ACCAGCACAGAA-CCTGCGGGACTTTAAGCTCGAAAATAAT
1 ACCAGCAC-GAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
*
26691264 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
**
26691302 ACCAGCACGAAGCCTGCGGGATAAAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* ** *
26691340 ACCAGCACGAAGCCTACGGGATAAAACTCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
26691378 ACCAGCACTAAGCCAGCGGGATTTAACCCGGATATA
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
26691414 TATCAAATAT
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
38 110 0.82
39 7 0.05
40 17 0.13
ACGTcount: A:0.36, C:0.26, G:0.22, T:0.17
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:26696311 original size:78 final size:78
Alignment explanation
Indices: 26696208--26696424 Score: 373
Period size: 78 Copynumber: 2.8 Consensus size: 78
26696198 CGAAAAAACA
* *
26696208 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
26696273 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
26696286 GATTTGGCATCTTTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
26696350 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
26696364 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
26696425 GTGTTTACAT
Statistics
Matches: 130, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
77 1 0.01
78 128 0.98
79 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:26696565 original size:44 final size:45
Alignment explanation
Indices: 26696364--26696592 Score: 207
Period size: 45 Copynumber: 5.1 Consensus size: 45
26696354 GATCCAAGAT
26696364 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAGCA
* * * * * * *
26696411 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGAT-GACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAG-CA
* * * * *
26696456 AATTTGGCATCTCTGTATTAGATGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
* * *
26696501 AATTTGGCATCTCTGTATTAGACGGGGAGTAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
** *
26696545 GATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
26696590 GAT
1 GAT
26696593 ATCGCCTTCT
Statistics
Matches: 142, Mismatches: 31, Indels: 20
0.74 0.16 0.10
Matches are distributed among these distances:
44 42 0.30
45 69 0.49
46 4 0.03
47 22 0.15
48 4 0.03
49 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
Found at i:26696954 original size:17 final size:19
Alignment explanation
Indices: 26696932--26696974 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
26696922 ATGGAAATAT
26696932 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
26696949 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
26696968 AATCTTA
1 AATCTTA
26696975 GAAGATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:26696964 original size:19 final size:19
Alignment explanation
Indices: 26696940--26696976 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
26696930 ATAATCTTCA
26696940 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26696959 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
26696977 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:26697002 original size:22 final size:22
Alignment explanation
Indices: 26696940--26696999 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 22
26696930 ATAATCTTCA
26696940 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26696959 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
26696981 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
26697000 GATTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.43
22 8 0.23
23 12 0.34
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:26698497 original size:38 final size:38
Alignment explanation
Indices: 26698430--26698647 Score: 240
Period size: 39 Copynumber: 5.6 Consensus size: 38
26698420 CAGTGATGTT
** *
26698430 TATCCGGACTTAGGGTCCACATGCTATGTGCTGGAATTA
1 TATCCGGAC-TAGGGTCTGCAGGCTATGTGCTGGAATTA
*
26698469 TATCCGGACTAGGGTCTGCAGGCCATGTGCTGGAATTA
1 TATCCGGACTAGGGTCTGCAGGCTATGTGCTGGAATTA
*
26698507 TATCCAGACTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTAGGGTCTGCAGGCTATGTGCTGGAATTA
* *
26698545 TATCCAGACTTAAGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGAC-TAGGGTCTGCAGGCTATGTGCTGGAATTA
* * * * *
26698584 TAACCGGACTTAAGGT-TCACAGGCTACGTGCTGGAAATA
1 TATCCGGAC-TAGGGTCT-GCAGGCTATGTGCTGGAATTA
* * **
26698623 TGTCCGGGCTAAAGTCTCGCAGGCT
1 TATCCGGACTAGGGTCT-GCAGGCT
26698648 TCGAGCTAGT
Statistics
Matches: 159, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
38 76 0.48
39 83 0.52
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (38 bp):
TATCCGGACTAGGGTCTGCAGGCTATGTGCTGGAATTA
Found at i:26703073 original size:40 final size:40
Alignment explanation
Indices: 26703014--26703221 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
26703004 CAATTGAATG
* * * *
26703014 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
26703054 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
26703094 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
26703134 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
26703174 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
26703214 ATATCCGG
1 ATATCCGG
26703222 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:26703152 original size:80 final size:80
Alignment explanation
Indices: 26703015--26703221 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
26703005 AATTGAATGA
* * ** * * *
26703015 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
26703080 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
26703093 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
26703158 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
26703175 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
26703222 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:26711082 original size:40 final size:40
Alignment explanation
Indices: 26711023--26711230 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
26711013 CAATTGAATG
* * * *
26711023 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
26711063 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
26711103 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
26711143 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
26711183 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
26711223 ATATCCGG
1 ATATCCGG
26711231 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:26711161 original size:80 final size:80
Alignment explanation
Indices: 26711024--26711230 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
26711014 AATTGAATGA
* * ** * * *
26711024 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
26711089 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
26711102 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
26711167 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
26711184 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
26711231 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:26716387 original size:53 final size:54
Alignment explanation
Indices: 26716293--26716481 Score: 161
Period size: 53 Copynumber: 3.5 Consensus size: 54
26716283 AACTTACCAT
* * * ** * *
26716293 TGCCATGTCTTGACAGGGTCTTACAT-ACTATCCTTGTCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGAGGA-CCTTGCCTTATAGAACTCATCAA
**
26716346 TTACATGCCTTGGCATGGTCTTACATG-GGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGAGGACC-TTGCCTTATAG-AACTCATCAA
* * * *** * * *
26716401 TGCCATGTCTTGACAT-ATCTTACATGATTTCCTTGCCATATAAAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGAGGACCTTGCCTTATAGAACTCATCAA
26716454 TGCCATGCCTTGGCATGGTCTTACATGA
1 TGCCATGCCTTGGCATGGTCTTACATGA
26716482 TATCCTTATC
Statistics
Matches: 107, Mismatches: 23, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
52 2 0.02
53 53 0.50
54 29 0.27
55 23 0.21
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGAGGACCTTGCCTTATAGAACTCATCAA
Found at i:26716575 original size:47 final size:47
Alignment explanation
Indices: 26716467--26716583 Score: 182
Period size: 47 Copynumber: 2.5 Consensus size: 47
26716457 CATGCCTTGG
* *
26716467 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACAAAATGCCATGTTCCAAA
* *
26716514 CATGGTCTTACATGGTATCCTTGTCTTACAAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACAAAATGCCATGTTCCAAA
26716561 CATGGTCTTACATGG-AGTCCTTA
1 CATGGTCTTACATGGTA-TCCTTA
26716584 ATCAATGCCG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.02
47 63 0.98
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACAAAATGCCATGTTCCAAA
Found at i:26716728 original size:44 final size:44
Alignment explanation
Indices: 26716677--26716763 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
26716667 GTATCCTTAA
* *
26716677 CCGTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTT
* *
26716721 CCGTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
26716764 GAGATATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.05
44 36 0.95
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTT
Found at i:26721328 original size:17 final size:18
Alignment explanation
Indices: 26721292--26721336 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
26721282 TCACATTTTG
*
26721292 TTCCTTATTTCTTTTCTTT
1 TTCCTT-TTTCTTTTATTT
26721311 TTCCTTTTT-TTTTATTT
1 TTCCTTTTTCTTTTATTT
*
26721328 TTCATTTTT
1 TTCCTTTTT
26721337 GGTGCCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.62
18 3 0.12
19 6 0.25
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.78
Consensus pattern (18 bp):
TTCCTTTTTCTTTTATTT
Found at i:26726263 original size:40 final size:40
Alignment explanation
Indices: 26726154--26726321 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
26726144 CGGAATTTAA
* * * * * *
26726154 CCGGATATAACCACAAGCACAACTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTACCATAAATGCCTTCGGGTCTTAGC
* ** * ** *
26726194 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTACCATAAATGCCTTCGGGTCTTAGC
* *
26726234 CCGGATATAA-CAACT-CGCATGAATTCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACTAC-CATAAATGCCTTCGGGTCTTAGC
*
26726274 CCGGATATAATCACTACCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAATCACTACCATAAATGCCTTCGGGTCTTAGC
*
26726314 TCGGATAT
1 CCGGATAT
26726322 TATTCAAATG
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
40 101 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTACCATAAATGCCTTCGGGTCTTAGC
Found at i:26728607 original size:13 final size:13
Alignment explanation
Indices: 26728591--26728615 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26728581 TTAAATTAGT
26728591 TAATTAGTTTAAA
1 TAATTAGTTTAAA
26728604 TAATTAGTTTAA
1 TAATTAGTTTAA
26728616 TAAACAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:26734539 original size:27 final size:28
Alignment explanation
Indices: 26734482--26734551 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
26734472 AAACTTGTAC
*
26734482 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
26734510 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
26734537 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
26734552 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:26734562 original size:27 final size:27
Alignment explanation
Indices: 26734482--26734563 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
26734472 AAACTTGTAC
* * *
26734482 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
26734510 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
26734537 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
26734564 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:26740672 original size:40 final size:40
Alignment explanation
Indices: 26740627--26740793 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
26740617 CGGAATATAA
26740627 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
26740667 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
26740707 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
26740747 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
26740786 CCGGATAT
1 CCGGATAT
26740794 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26740777 original size:80 final size:79
Alignment explanation
Indices: 26740627--26740793 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
26740617 CGGAATATAA
* *
26740627 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
26740692 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
26740707 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
26740769 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
26740786 CCGGATAT
1 CCGGATAT
26740794 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:26747953 original size:40 final size:40
Alignment explanation
Indices: 26747879--26748023 Score: 164
Period size: 40 Copynumber: 3.6 Consensus size: 40
26747869 CCGCACCAAG
* * * * * *
26747879 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
26747919 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
** * *
26747959 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
26747999 GTCCTTCGGGGCTTAGCCCGGATAT
1 G-CCTTCGGGTCTTAGCCCGGATAT
26748024 CAAATTTCTC
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 67 0.75
41 22 0.25
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:26756009 original size:39 final size:40
Alignment explanation
Indices: 26755929--26756071 Score: 162
Period size: 40 Copynumber: 3.6 Consensus size: 40
26755919 CCGCACCAAG
* * * * * *
26755929 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
26755969 GCCTTCGGGTCTTAGCCCGGAT-TAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
** * *
26756008 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
26756048 GTCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
26756072 CATTCAATTT
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 35 0.40
40 53 0.60
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:26761091 original size:40 final size:40
Alignment explanation
Indices: 26760925--26761109 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
26760915 TTCGAATGAT
* * *
26760925 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * *
26760965 ATCCGGAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
26761005 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
* *
26761045 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-AA
*
26761086 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
26761110 TGAATGTGTA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 111 0.93
41 8 0.07
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:26761103 original size:80 final size:80
Alignment explanation
Indices: 26760925--26761112 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
26760915 TTCGAATGAT
* *
26760925 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGAATAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
26760990 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* * **
26761005 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGAATAAGAT-CCGAAGG
* *
26761066 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
26761086 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
26761113 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGAATAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:26763837 original size:27 final size:28
Alignment explanation
Indices: 26763780--26763849 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
26763770 AAACTTGTAC
*
26763780 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
26763808 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
26763835 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
26763850 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:26763860 original size:27 final size:27
Alignment explanation
Indices: 26763780--26763861 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
26763770 AAACTTGTAC
* * *
26763780 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
26763808 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
26763835 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
26763862 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:26768359 original size:85 final size:85
Alignment explanation
Indices: 26768216--26768394 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
26768206 TCGTGTAAAG
*
26768216 GACACGGCCTATGGCCACTGGCATATGCCTTAAATGGGATGCTGACATTAGATACAGAATGTCAA
1 GACACGGGCTATGGCCACTGGCATATGCCTTAAATGGGATGCTGACATTAGATACAGAATGTCAA
26768281 GGTTTTTAAACACAGGCTAT
66 GGTTTTTAAACACAGGCTAT
*
26768301 GACACGGGCTATGGCCACTGGCATGTGCCTTAAATGGGATGCTGACATTAGATACAGAATGTCAA
1 GACACGGGCTATGGCCACTGGCATATGCCTTAAATGGGATGCTGACATTAGATACAGAATGTCAA
26768366 GGTTTTTAAACACAGGCTAT
66 GGTTTTTAAACACAGGCTAT
26768386 GACACGGGC
1 GACACGGGC
26768395 GTGTCATGGC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (85 bp):
GACACGGGCTATGGCCACTGGCATATGCCTTAAATGGGATGCTGACATTAGATACAGAATGTCAA
GGTTTTTAAACACAGGCTAT
Found at i:26772981 original size:27 final size:27
Alignment explanation
Indices: 26772951--26773158 Score: 290
Period size: 27 Copynumber: 7.7 Consensus size: 27
26772941 CCTAAATTGA
*
26772951 TAAAATGACTATTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
* * *
26772978 TAAAATGATTGTTTTTCCCTTATCGGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
* *
26773005 TAAAATGACTGTTTTTCTCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
*
26773032 TAAAATGACTGTTTTGCCTTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
*
26773059 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
* * *
26773086 TAAAGTGAATGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
* *
26773113 TAAAATGACAGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGGGG
*
26773140 TAAAATGATTGTTTTGCCC
1 TAAAATGACTGTTTTGCCC
26773159 CTAACTGATA
Statistics
Matches: 160, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 160 1.00
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGGGG
Found at i:26773170 original size:27 final size:27
Alignment explanation
Indices: 26772939--26773179 Score: 124
Period size: 27 Copynumber: 8.9 Consensus size: 27
26772929 TATACCTAGA
* *
26772939 CCCCTAAATTGATAAAATGACTATTTTG
1 CCCCT-AAGTGATAAAATGACTGTTTTG
* * * * * *
26772967 CCCTTATGGGGTAAAATGATTGTTTTT
1 CCCCTAAGTGATAAAATGACTGTTTTG
* * * *
26772994 CCCTTATCG-GGTAAAATGACTGTTTTT
1 CCCCTA-AGTGATAAAATGACTGTTTTG
* * * * *
26773021 CTCTTATGGGGTAAAATGACTGTTTTG
1 CCCCTAAGTGATAAAATGACTGTTTTG
** * * *
26773048 CCTTTATGGGGTAAAATGACTGTTTTG
1 CCCCTAAGTGATAAAATGACTGTTTTG
* * * * *
26773075 CCCTTATGTGGTAAAGTGAATGTTTTG
1 CCCCTAAGTGATAAAATGACTGTTTTG
* * * * *
26773102 CCCTTATGAGGTAAAATGACAGTTTTG
1 CCCCTAAGTGATAAAATGACTGTTTTG
* * * *
26773129 CCCTTATGTGGTAAAATGATTGTTTTG
1 CCCCTAAGTGATAAAATGACTGTTTTG
*
26773156 CCCCTAACTGATAAAATGACTGTT
1 CCCCTAAGTGATAAAATGACTGTT
26773180 GTACCCCTGT
Statistics
Matches: 180, Mismatches: 31, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 174 0.97
28 5 0.03
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.39
Consensus pattern (27 bp):
CCCCTAAGTGATAAAATGACTGTTTTG
Found at i:26773171 original size:54 final size:54
Alignment explanation
Indices: 26772939--26773175 Score: 219
Period size: 54 Copynumber: 4.4 Consensus size: 54
26772929 TATACCTAGA
* *
26772939 CCCCTAAATTGATAAAATGACTA-TTTTGCCCTTATGGGGTAAAATGATTGTTTTT
1 CCCCT-AACTGATAAAATGAC-AGTTTTGCCCTTATGGGGTAAAATGATTGTTTTG
* * * * * * * *
26772994 CCCTTATCGGGTAAAATGACTGTTTTTCTCTTATGGGGTAAAATGACTGTTTTG
1 CCCCTAACTGATAAAATGACAGTTTTGCCCTTATGGGGTAAAATGATTGTTTTG
** *** * * * * *
26773048 CCTTTATGGGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAGTGAATGTTTTG
1 CCCCTAACTGATAAAATGACAGTTTTGCCCTTATGGGGTAAAATGATTGTTTTG
* *
26773102 -CCCTTA-TGAGGTAAAATGACAGTTTTGCCCTTATGTGGTAAAATGATTGTTTTG
1 CCCCTAACTGA--TAAAATGACAGTTTTGCCCTTATGGGGTAAAATGATTGTTTTG
26773156 CCCCTAACTGATAAAATGAC
1 CCCCTAACTGATAAAATGAC
26773176 TGTTGTACCC
Statistics
Matches: 150, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
52 1 0.01
53 2 0.01
54 135 0.90
55 9 0.06
56 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (54 bp):
CCCCTAACTGATAAAATGACAGTTTTGCCCTTATGGGGTAAAATGATTGTTTTG
Done.