Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 87 of 292
Found at i:26777004 original size:43 final size:43
Alignment explanation
Indices: 26776941--26777041 Score: 150
Period size: 43 Copynumber: 2.3 Consensus size: 43
26776931 TTCAACGAAC
26776941 TCGCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTA
* **
26776984 TTGCACACTTAGTG-TCAATTAATTAGTTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCT-AATTAATTAACTGAAGCTATAATTGTA
*
26777027 TCACACACTTAGTGC
1 TCGCACACTTAGTGC
26777042 CATTACATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
42 1 0.02
43 50 0.98
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.36
Consensus pattern (43 bp):
TCGCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTA
Found at i:26780794 original size:48 final size:46
Alignment explanation
Indices: 26780679--26780850 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
26780669 TATGTGTGCT
26780679 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
* *
26780725 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AG-TA-TGAGAGCC
* * * **
26780773 AGTGTAAGACATGTCTAGGACATGCAGT--GGCATTGAG-ACT-AGAGTT
1 AGTGTAAGACATGTCTGGGACATGCA-TCAGCCA--CAGTA-TGAGAGCC
26780819 AGTGTAAGACATGTCTGGGACATGCATCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC
26780851 TCGCGGTAGA
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
45 2 0.02
46 62 0.58
47 6 0.06
48 33 0.31
49 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
Found at i:26780871 original size:94 final size:89
Alignment explanation
Indices: 26780725--26780989 Score: 248
Period size: 94 Copynumber: 2.8 Consensus size: 89
26780715 TATGAGAGCC
** ** *
26780725 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATTTAAGCCAGTGTAAGACATGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATA-GAAAGCTAGTGTAAGACATGTCT-
26780790 GGACATGCAGTGGCA-TTGAGAC-TAGAGTT
64 GGACATGC-GT--CAGTT-AGACGTA-AGTT
* *
26780819 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGGTAGACATGCTAGTGTAAGAC-TAGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATAGA-AAGCTAGTGTAAGACAT-GTCT
* * *
26780883 GAGACATGGCGTCAGTTTGTCGTATGTT
64 G-GACAT-GCGTCAGTTAGACGTAAGTT
* * *
26780911 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGCTATATGAAAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGCGATA-GAAAGCTAGTGTAAGA-CATGTC
26780976 TGGGACATGGCGTC
63 T-GGACAT-GCGTC
26780990 GACATCTTAA
Statistics
Matches: 145, Mismatches: 15, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
92 29 0.20
93 33 0.23
94 79 0.54
95 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (89 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATAGAAAGCTAGTGTAAGACATGTCTGG
ACATGCGTCAGTTAGACGTAAGTT
Found at i:26786427 original size:40 final size:39
Alignment explanation
Indices: 26786382--26786511 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
26786372 CGGAATATAA
26786382 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
26786422 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
26786462 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
26786502 CCGGATATAA
1 CCGGATATAA
26786512 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:26786526 original size:40 final size:40
Alignment explanation
Indices: 26786398--26786549 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
26786388 ATAACCATGT
* * *
26786398 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
26786438 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
26786478 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
26786518 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
26786550 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:26786532 original size:80 final size:80
Alignment explanation
Indices: 26786398--26786547 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
26786388 ATAACCATGT
*
26786398 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
26786462 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
26786478 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
26786541 CCCGGAT
64 CCCGGAT
26786548 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:26789968 original size:6 final size:6
Alignment explanation
Indices: 26789957--26789981 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26789947 AAGTTCATAA
26789957 TTAACT TTAACT TTAACT TTAACT T
1 TTAACT TTAACT TTAACT TTAACT T
26789982 ACCATAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAACT
Found at i:26790337 original size:13 final size:13
Alignment explanation
Indices: 26790319--26790361 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
26790309 TTGTATAATT
26790319 ATTTCATTTAAAC
1 ATTTCATTTAAAC
*
26790332 ATTTCATCTT-ACC
1 ATTTCAT-TTAAAC
*
26790345 ATTTCATTTACAC
1 ATTTCATTTAAAC
26790358 ATTT
1 ATTT
26790362 AACACATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
12 2 0.08
13 21 0.84
14 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.49
Consensus pattern (13 bp):
ATTTCATTTAAAC
Found at i:26793303 original size:46 final size:46
Alignment explanation
Indices: 26793228--26793400 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
26793218 TGTAACCCGC
* *
26793228 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
26793274 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
26793324 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
26793366 CCATAAGTGAACT-GGACTCAACTCAACGCGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
26793401 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 22 0.21
45 6 0.06
46 34 0.32
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:26798876 original size:92 final size:93
Alignment explanation
Indices: 26798712--26798883 Score: 301
Period size: 92 Copynumber: 1.9 Consensus size: 93
26798702 CGCCCATAAG
* * *
26798712 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26798777 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
26798805 CGAACT-GGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26798869 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
26798884 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 69 0.92
93 6 0.08
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26798879 original size:46 final size:46
Alignment explanation
Indices: 26798705--26798879 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
26798695 TGTAACCCGC
* * *
26798705 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
26798751 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
26798801 -C-TCA-CGAACT-GGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
26798843 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26798880 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 2 0.02
45 5 0.05
46 79 0.73
47 5 0.05
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:26801999 original size:2 final size:2
Alignment explanation
Indices: 26801977--26802018 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
26801967 TGATGGCCGA
* * *
26801977 AT AT GT AT AT CT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26802019 CAACTATACT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26806597 original size:43 final size:43
Alignment explanation
Indices: 26806440--26806598 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
26806430 TATGTGCTAT
* *
26806440 CGTGTAAGACCACGTCTGGGACATTGGCATCGACT-TGTGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * *
26806484 CGTGTAAGACCACGCCTGGGACGTTGACATCG-TATTTGATTC
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* *
26806526 CGTGTAAGGCC-CTGTTTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
* * * *
26806569 CATGTAAGACCGCTTCTGGGGCGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
26806599 TGTACAAGAT
Statistics
Matches: 94, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.30
43 35 0.37
44 30 0.32
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:26812015 original size:48 final size:48
Alignment explanation
Indices: 26811935--26812457 Score: 555
Period size: 48 Copynumber: 10.9 Consensus size: 48
26811925 ACTAAGGTCG
* *
26811935 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCGATA
* * * * **
26811983 TGTGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCAGCATTTATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCGATA
* * * * *
26812031 TGAGAGCTAGTGTAAGACCATGTCTGGGATATAGCATCAACCTCGATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCGATA
* * * * ** *
26812079 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTACA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCGATA
* * *
26812127 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGCCATCAGCCTCGATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCGATA
* * * ** **
26812175 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTATTTATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCGATA
* *
26812223 TGAGAGCTAGTGTAAGACCATGTCT-GAGACATGGCATCAGCCTCGAAA
1 TGAGAGCCAGTGTAAGACCATGTCTGGA-ACATGGCATCAGCCTCGATA
* * * * ** * **
26812271 TGTGATCCAATGTAAGACCATGTTTGGAACATGGCATTGGCATTTATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCGATA
* * * *
26812319 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCGATA
* * *
26812367 TGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCAGCAC-CGATATA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGC-CTCG--ATA
*
26812417 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGC
26812458 ATCTTACCCT
Statistics
Matches: 377, Mismatches: 93, Indels: 8
0.79 0.19 0.02
Matches are distributed among these distances:
47 2 0.01
48 333 0.88
49 3 0.01
50 39 0.10
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCGATA
Found at i:26812102 original size:96 final size:96
Alignment explanation
Indices: 26811935--26812457 Score: 848
Period size: 96 Copynumber: 5.4 Consensus size: 96
26811925 ACTAAGGTCG
26811935 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
* *
26812000 CTATGTTTGGAACATGGCATCAGCATTTATA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
* * *
26812031 TGAGAGCTAGTGTAAGACCATGTCTGGGATATAGCATCAACCTCGATATGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
*
26812096 CCATGTTTGGAACATGGCATCGGCATTTACA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
*
26812127 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGCCATCAGCCTCGATATGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
*
26812192 CCATGTTTGGAACATGGCATCGGTATTTATA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
* * * *
26812223 TGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCTCGAAATGTGATCCAATGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
*
26812288 CCATGTTTGGAACATGGCATTGGCATTTATA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
* *
26812319 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
* * **
26812384 CCATGTTTGGAACATAGCATCAGCACCGATATA
66 CCATGTTTGGAACATGGCATCGGCA--TTTATA
*
26812417 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
26812458 ATCTTACCCT
Statistics
Matches: 394, Mismatches: 31, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
96 351 0.89
98 43 0.11
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
CCATGTTTGGAACATGGCATCGGCATTTATA
Found at i:26812934 original size:10 final size:9
Alignment explanation
Indices: 26812906--26812931 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26812896 ATTCATTTAT
26812906 TTTTAGTTA
1 TTTTAGTTA
26812915 TTTTAGTTA
1 TTTTAGTTA
26812924 TTTTAGTT
1 TTTTAGTT
26812932 TATGTCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (9 bp):
TTTTAGTTA
Found at i:26813057 original size:50 final size:53
Alignment explanation
Indices: 26812994--26813110 Score: 179
Period size: 50 Copynumber: 2.3 Consensus size: 53
26812984 TAATAAAGTT
* *
26812994 ATGCATTATGTAACTCTCATGTAAGTT-AAGTTTGCATCA-TAAATTATG-AC
1 ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
26813044 ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
1 ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
*
26813097 -TGCATTAAGTAACT
1 ATGCATTATGTAACT
26813111 TATTTGTTCA
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
50 26 0.43
51 12 0.20
52 21 0.34
53 2 0.03
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37
Consensus pattern (53 bp):
ATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
Found at i:26814366 original size:40 final size:39
Alignment explanation
Indices: 26814239--26814368 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
26814229 ATGCTGGAAA
* *
26814239 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
26814279 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
26814319 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
26814359 TTATATCCGG
1 TTATATCCGG
26814369 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:26821514 original size:40 final size:40
Alignment explanation
Indices: 26821469--26821579 Score: 140
Period size: 39 Copynumber: 2.8 Consensus size: 40
26821459 CTGGAAATTA
* *
26821469 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-CGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTC-G-TAC
*
26821510 -ATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTAC
26821548 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCA
26821580 CGTGGTTATA
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
38 2 0.03
39 35 0.55
40 27 0.42
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGTAC
Found at i:26821592 original size:40 final size:38
Alignment explanation
Indices: 26821466--26821594 Score: 159
Period size: 40 Copynumber: 3.3 Consensus size: 38
26821456 ATGCTGGAAA
* *
26821466 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTGG
* * *
26821506 CTACATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTGTGC-AGTGG
*
26821545 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATT-GTGCA-GTGG
26821585 TTATATCCGG
1 TTATATCCGG
26821595 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.49
40 39 0.51
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (38 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTGTGCAGTGG
Found at i:26825963 original size:39 final size:39
Alignment explanation
Indices: 26825882--26826044 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
26825872 TATGGTAACC
* *
26825882 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
26825922 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
26825961 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
26826000 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
26826039 CGCACA
1 CGCACA
26826045 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:26833887 original size:39 final size:39
Alignment explanation
Indices: 26833806--26833968 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
26833796 TATGGTAACC
* *
26833806 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
26833846 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
26833885 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
26833924 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
26833963 CGCACA
1 CGCACA
26833969 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:26836313 original size:6 final size:6
Alignment explanation
Indices: 26836304--26836362 Score: 57
Period size: 6 Copynumber: 9.3 Consensus size: 6
26836294 AAAAGCATGT
* *
26836304 GAAAAA GAAAAA GAAATA GAAAAA GAAAAAA GGAATGAAA G-AAAA CAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA G-AAAAA -GAA--AAA GAAAAA GAAAAA
26836355 GAAAAA GA
1 GAAAAA GA
26836363 GAATGAAAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 3 0.07
6 28 0.64
7 8 0.18
8 2 0.05
9 3 0.07
ACGTcount: A:0.76, C:0.02, G:0.19, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:26836360 original size:27 final size:28
Alignment explanation
Indices: 26836313--26836383 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
26836303 TGAAAAAGAA
*
26836313 AAAGAAATAGAAAAAGAAAAAAG-GAATG
1 AAAGAAA-ACAAAAAGAAAAAAGAGAATG
26836341 AAAGAAAACAAAAAG-AAAAAGAGAATG
1 AAAGAAAACAAAAAGAAAAAAGAGAATG
*
26836368 AAAGAGAACAAAAAGA
1 AAAGAAAACAAAAAGA
26836384 GATTGAGAGC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 6 0.15
27 26 0.67
28 7 0.18
ACGTcount: A:0.73, C:0.03, G:0.20, T:0.04
Consensus pattern (28 bp):
AAAGAAAACAAAAAGAAAAAAGAGAATG
Found at i:26836401 original size:21 final size:21
Alignment explanation
Indices: 26836356--26836401 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
26836346 AAACAAAAAG
*
26836356 AAAAAGAGAATGAAAGAGAAC
1 AAAAAGAGAATGAAAGAGAAA
* * *
26836377 AAAAAGAGATTGAGAGCGAAA
1 AAAAAGAGAATGAAAGAGAAA
26836398 AAAA
1 AAAA
26836402 TGTGAGAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.65, C:0.04, G:0.24, T:0.07
Consensus pattern (21 bp):
AAAAAGAGAATGAAAGAGAAA
Found at i:26836722 original size:13 final size:13
Alignment explanation
Indices: 26836704--26836731 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26836694 GGTAAGCAAG
26836704 GTAAGGGTTTCAT
1 GTAAGGGTTTCAT
26836717 GTAAGGGTTTCAT
1 GTAAGGGTTTCAT
26836730 GT
1 GT
26836732 TATCTGAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.32, T:0.39
Consensus pattern (13 bp):
GTAAGGGTTTCAT
Found at i:26838104 original size:50 final size:52
Alignment explanation
Indices: 26838046--26838164 Score: 161
Period size: 52 Copynumber: 2.3 Consensus size: 52
26838036 TTAATAAAGT
* * *
26838046 CATGCATTATGTAACTCTCAT-ATAATTTAAGTTTGCATCA-TAAATTATGA
1 CATGCATTATGTAACTCCCATGATAATTAAAGTTTGCATCATTAAATTAAGA
* * *
26838096 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGT
1 CATGCATTATGTAACTCCCATGATAATTAAAGTTTGCATCATTAAATTAAGA
*
26838148 CATGCATTAAGTAACTC
1 CATGCATTATGTAACTC
26838165 ATTTGTTCAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 20 0.33
51 16 0.27
52 24 0.40
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGATAATTAAAGTTTGCATCATTAAATTAAGA
Found at i:26838162 original size:52 final size:51
Alignment explanation
Indices: 26838033--26838164 Score: 167
Period size: 50 Copynumber: 2.6 Consensus size: 51
26838023 ATGTGTTCTG
* * * *
26838033 CATTTAATAAAGTCATGCATTATGTAACTCTCATATAATTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATATAATTAAAGTTTGCAT
* * * *
26838084 CA-TAAATTATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCAT-ATAATTAAAGTTTGCAT
*
26838135 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
26838165 ATTTGTTCAT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 26 0.38
51 18 0.26
52 24 0.35
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATATAATTAAAGTTTGCAT
Found at i:26838181 original size:51 final size:50
Alignment explanation
Indices: 26838046--26838191 Score: 134
Period size: 52 Copynumber: 2.9 Consensus size: 50
26838036 TTAATAAAGT
* * * * *
26838046 CATGCATTATGTAACTCTCATATAATTTAAGTTTGCATCA-TAAATTATGA
1 CATGCATTAAGTAACTCACATGTTATTT-AGTTTGCATCATTAAATTAAGA
* * * *
26838096 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGT
1 CATGCATTAAGTAACTCACATGTTA-TT-TAGTTTGCATCATTAAATTAAGA
** *
26838148 CATGCATTAAGTAACTCATTTGTTCATTTAGTTTACATC-TTAAA
1 CATGCATTAAGTAACTCACATGTT-ATTTAGTTTGCATCATTAAA
26838192 CCATGCATTT
Statistics
Matches: 80, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
50 27 0.34
51 22 0.28
52 30 0.38
53 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (50 bp):
CATGCATTAAGTAACTCACATGTTATTTAGTTTGCATCATTAAATTAAGA
Found at i:26838807 original size:12 final size:12
Alignment explanation
Indices: 26838790--26838818 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
26838780 AAAGGTCACA
26838790 AATAGGCATTTG
1 AATAGGCATTTG
26838802 AATAGGCATTTG
1 AATAGGCATTTG
26838814 AATAG
1 AATAG
26838819 TCATAATAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (12 bp):
AATAGGCATTTG
Found at i:26842467 original size:50 final size:50
Alignment explanation
Indices: 26842402--26842689 Score: 279
Period size: 50 Copynumber: 5.8 Consensus size: 50
26842392 ACCGAAGCTC
* * *
26842402 TCTGGTACGCATAGTAGCCTGCACTTAGTTCTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
26842452 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * *
26842502 T-TGGATACACGTAGTAGCCTGCAC-T--TACT-CAC--GTGATCGTAGCTA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACAA
* * * *
26842547 TCGGGTACGCATAGTAGCCTACACTTAGTA-TAACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACT-ACACATGTGACCTAACAA
* * *
26842597 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTGA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** *
26842646 TCGTCTTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TC-TGGT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
26842690 TTCTCACAAC
Statistics
Matches: 197, Mismatches: 27, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
44 4 0.02
45 22 0.11
46 6 0.03
47 5 0.03
48 2 0.01
49 11 0.06
50 111 0.56
51 4 0.02
52 32 0.16
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:26843898 original size:31 final size:31
Alignment explanation
Indices: 26843863--26843926 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
26843853 CCTTTTCATG
26843863 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
26843894 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
26843925 TT
1 TT
26843927 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:26844169 original size:24 final size:24
Alignment explanation
Indices: 26844118--26844284 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
26844108 GCTTTATCAT
* *
26844118 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * **
26844143 ATAATTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
26844167 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
26844190 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26844214 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26844238 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
26844262 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
26844285 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 23 0.17
24 99 0.74
25 11 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:26844223 original size:71 final size:71
Alignment explanation
Indices: 26844117--26844284 Score: 248
Period size: 71 Copynumber: 2.3 Consensus size: 71
26844107 TGCTTTATCA
* *
26844117 TATAACTGGAGGCCT-AGCCTCTTTTAATAATTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
26844181 AGCCCTTT
64 AGCCCTTT
* * **
26844189 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
26844254 CCCTTT
66 CCCTTT
26844260 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
26844285 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
71 52 0.59
72 36 0.41
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:26844359 original size:20 final size:20
Alignment explanation
Indices: 26844334--26844394 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
26844324 TTATGATTAC
*
26844334 ATCATGTGCATATCATTCAT
1 ATCATGTGCATATCATACAT
*
26844354 ATCATGTGCATATGATACAT
1 ATCATGTGCATATCATACAT
* *
26844374 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
26844394 A
1 A
26844395 CCATATTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:26844365 original size:11 final size:11
Alignment explanation
Indices: 26844334--26844366 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
26844324 TTATGATTAC
26844334 ATCATGTGCAT
1 ATCATGTGCAT
26844345 ATCAT-T-CAT
1 ATCATGTGCAT
26844354 ATCATGTGCAT
1 ATCATGTGCAT
26844365 AT
1 AT
26844367 GATACATGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 8 0.40
10 2 0.10
11 10 0.50
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:26844469 original size:25 final size:25
Alignment explanation
Indices: 26844437--26844484 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26844427 ATACATAAAC
* * *
26844437 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
26844462 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
26844485 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:26845752 original size:27 final size:27
Alignment explanation
Indices: 26845723--26846062 Score: 432
Period size: 27 Copynumber: 12.6 Consensus size: 27
26845713 GGGTATTTTA
* * *
26845723 GTAATTTTGTAAATCGGGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
26845750 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
26845777 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
26845804 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
26845831 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
26845858 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
26845885 GTAATTATGTAAATTGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
26845912 GTAATTCTGTAAATCGAGAGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
26845939 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
26845966 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
26845993 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
26846020 GTAATTCTAT-AACCTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
*
26846047 GTAATTCTATAAATCG
1 GTAATTCTGTAAATCG
26846063 GGAGTACTTT
Statistics
Matches: 278, Mismatches: 31, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
26 4 0.01
27 270 0.97
28 4 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:26850443 original size:30 final size:30
Alignment explanation
Indices: 26850407--26850566 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
26850397 GACAAGATTG
* * * * *
26850407 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
26850437 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
26850465 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
26850494 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
26850524 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
26850553 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26850567 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:26850534 original size:59 final size:57
Alignment explanation
Indices: 26850407--26850566 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
26850397 GACAAGATTG
* * * * * *
26850407 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
26850465 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
26850524 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
26850567 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:26858362 original size:30 final size:30
Alignment explanation
Indices: 26858326--26858485 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
26858316 GACAAGATTG
* * * * *
26858326 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
26858356 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
26858384 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
26858413 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
26858443 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
26858472 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26858486 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:26858453 original size:59 final size:57
Alignment explanation
Indices: 26858326--26858485 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
26858316 GACAAGATTG
* * * * * *
26858326 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
26858384 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
26858443 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
26858486 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:26858973 original size:27 final size:27
Alignment explanation
Indices: 26858935--26859127 Score: 215
Period size: 27 Copynumber: 7.1 Consensus size: 27
26858925 CCTGGAACTG
* *
26858935 AAATTGGGGGTAAAACGGTAATTATGT
1 AAATTGAGGGTAAAACGGTAATTCTGT
* *
26858962 AAATTGGGGGTAAAACAGTAATTCTGT
1 AAATTGAGGGTAAAACGGTAATTCTGT
* **
26858989 AAATCGAGGGTAAAATAGTAATTCTGT
1 AAATTGAGGGTAAAACGGTAATTCTGT
* *
26859016 AAACTGAGGGTAAAATGGTAATTCTGT
1 AAATTGAGGGTAAAACGGTAATTCTGT
* * * **
26859043 AAATCGAGGGTAAAACAGTAATTGTAC
1 AAATTGAGGGTAAAACGGTAATTCTGT
* *
26859070 AAATCGAGGGTAAAACGGTAATTCTAT
1 AAATTGAGGGTAAAACGGTAATTCTGT
** *
26859097 AACCTGAGGGTAAAACGGTAATTCTAT
1 AAATTGAGGGTAAAACGGTAATTCTGT
26859124 AAAT
1 AAAT
26859128 CGGGAGTACT
Statistics
Matches: 143, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (27 bp):
AAATTGAGGGTAAAACGGTAATTCTGT
Found at i:26859046 original size:81 final size:81
Alignment explanation
Indices: 26858942--26859129 Score: 268
Period size: 81 Copynumber: 2.3 Consensus size: 81
26858932 CTGAAATTGG
* * * ** *
26858942 GGGTAAAACGGTAATTATGTAAATTGGGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTACAAATCGAGGGTAAAACAG
*
26859007 TAATTCTGTAAACTGA
66 TAATTCTATAAACTGA
* * *
26859023 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTGTACAAATCGAGGGTAAAACGG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTACAAATCGAGGGTAAAACAG
*
26859088 TAATTCTATAACCTGA
66 TAATTCTATAAACTGA
*
26859104 GGGTAAAACGGTAATTCTATAAATCG
1 GGGTAAAACGGTAATTCTGTAAATCG
26859130 GGAGTACTTT
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 94 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (81 bp):
GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTACAAATCGAGGGTAAAACAG
TAATTCTATAAACTGA
Found at i:26861890 original size:40 final size:40
Alignment explanation
Indices: 26861845--26861974 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
26861835 CGGAATACAA
26861845 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
26861885 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
26861925 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*
26861965 CTGGATATAA
1 CCGGATATAA
26861975 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:26869960 original size:40 final size:40
Alignment explanation
Indices: 26869915--26870043 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
26869905 CGGAATACAA
26869915 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
26869955 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
26869995 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTA-A
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
26870034 CCGGATATAA
1 CCGGATATAA
26870044 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 11 0.15
40 64 0.85
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:26874857 original size:30 final size:30
Alignment explanation
Indices: 26874821--26874921 Score: 127
Period size: 28 Copynumber: 3.5 Consensus size: 30
26874811 GACAAGATTG
* * *
26874821 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
*
26874851 GCACTAAGTGTGCGAGTTT--GATTATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
26874879 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
26874908 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26874922 GATTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 23 0.37
29 20 0.32
30 19 0.31
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:26874915 original size:29 final size:29
Alignment explanation
Indices: 26874821--26874921 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
26874811 GACAAGATTG
* * * *
26874821 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTGAAAA-TATATA
*
26874851 GCACTAAGTGTGCGAGTTTG--ATTATATA
1 GCACTAAGTGTGCGAG-TTGAAAATATATA
*
26874879 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
26874908 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26874922 GATTCACTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 22 0.36
30 15 0.25
31 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAATATATA
Found at i:26883054 original size:50 final size:49
Alignment explanation
Indices: 26882989--26883237 Score: 223
Period size: 50 Copynumber: 5.0 Consensus size: 49
26882979 AGAGCTCTCT
* * * *
26882989 GGTACACATA-TAGCCTGCACTTAGTATTAAACAAGCGACCTAACAATC
1 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATC
* * *
26883037 TTGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
1 -GGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATC
* * * * * * *
26883087 GGATACATGTAGTAGCCTGCGCTTACTACTACACACGTGATCGAAGCTATC
1 GG-TACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CAATC
* ** * * *
26883138 AGATATGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATC
1 -GGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATC
* * * *
26883188 TGGTACAAGAATTAGCCTGCACTTAGTACTACACACGTGACCTAA-AATC
1 -GGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATC
26883237 G
1 G
26883238 TCTTAAACAC
Statistics
Matches: 158, Mismatches: 38, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
48 1 0.01
49 13 0.08
50 108 0.68
51 35 0.22
52 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (49 bp):
GGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATC
Found at i:26883221 original size:101 final size:101
Alignment explanation
Indices: 26883046--26883227 Score: 267
Period size: 101 Copynumber: 1.8 Consensus size: 101
26883036 CTTGTACACG
* * * * * *
26883046 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCGGATACATGTAGTAGCCTGCGCTT
1 TAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCGGATACAAGAAGTAGCCTGCACTT
26883111 ACTACTACACACGTGATCGAAGCTATCAGATATGCA
66 ACTACTACACACGTGATCGAAGCTATCAGATATGCA
* *
26883147 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGG-TACAAGAATTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATC-GGATACAAGAAGTAGCCTGCACT
*
26883211 TAGTACTACACACGTGA
65 TACTACTACACACGTGA
26883228 CCTAAAATCG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 69 0.97
102 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCGGATACAAGAAGTAGCCTGCACTT
ACTACTACACACGTGATCGAAGCTATCAGATATGCA
Found at i:26883272 original size:52 final size:53
Alignment explanation
Indices: 26882992--26883272 Score: 160
Period size: 50 Copynumber: 5.5 Consensus size: 53
26882982 GCTCTCTGGT
* * * * *
26882992 ACACATA-TAGCCTGCACTTAGTATTAAACAAGCGACCTAACAATCTTGT---
1 ACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTCGTACA
* * * * * *
26883041 ACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA--TCGGA-T
1 ACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTCGTACA
** * * * * * * * * *
26883091 ACATGTAGTAGCCTGCGCTTACTACTACACACGTGATCGAAGCTATC-AG-A-T
1 ACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAA-CAATCTCGTACA
** * *
26883142 ATGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 ACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTCGTACA
* * * *
26883195 AGA-AT--TAGCCTGCACTTAGTACTACACACGTGACCTAA-AATCGTCTTA-A
1 ACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATC-TCGTACA
*
26883244 ACACATAGTAGCCTACACATAGTACTACA
1 ACACATAGTAGCCTACACTTAGTACTACA
26883273 AGTGTTCTCA
Statistics
Matches: 180, Mismatches: 39, Indels: 23
0.74 0.16 0.10
Matches are distributed among these distances:
48 2 0.01
49 13 0.07
50 106 0.59
51 35 0.19
52 23 0.13
53 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (53 bp):
ACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTCGTACA
Found at i:26895268 original size:24 final size:24
Alignment explanation
Indices: 26895223--26895268 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
26895213 TACTAATAGT
* * *
26895223 TTAAATATTGAATTATATTTTAGA
1 TTAAATATTAAATTAAAATTTAGA
26895247 TTAAATATTAAATTAAAATTTA
1 TTAAATATTAAATTAAAATTTA
26895269 ATTGTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
TTAAATATTAAATTAAAATTTAGA
Found at i:26898970 original size:29 final size:29
Alignment explanation
Indices: 26898938--26899010 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
26898928 CTTCGAGCTC
*
26898938 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
26898967 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
26898996 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
26899011 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:26903431 original size:33 final size:34
Alignment explanation
Indices: 26903382--26903445 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 34
26903372 GCATGTTGTA
* *
26903382 ACAGTCTAGGCTTGAGCCCTATTCAG-AATCAGT
1 ACAGTCTAGGCCTGAGCCCTATACAGTAATCAGT
*
26903415 ACAGTCTGGGCCTGAGCCCTATACAGTAATC
1 ACAGTCTAGGCCTGAGCCCTATACAGTAATC
26903446 GTGTGGCCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 23 0.85
34 4 0.15
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (34 bp):
ACAGTCTAGGCCTGAGCCCTATACAGTAATCAGT
Found at i:26903441 original size:27 final size:29
Alignment explanation
Indices: 26903411--26903474 Score: 73
Period size: 27 Copynumber: 2.3 Consensus size: 29
26903401 TATTCAGAAT
* *
26903411 CAGTACAGTC-TG-GGCCTGAGCCCTATA
1 CAGTACAGTCGTGTGGCCTAAGCCCAATA
26903438 CAGTA-A-TCGTGTGGCCTAAGCCCAATA
1 CAGTACAGTCGTGTGGCCTAAGCCCAATA
26903465 CAGTATCAGT
1 CAGTA-CAGT
26903475 ACAGTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
25 2 0.07
26 3 0.10
27 23 0.77
29 1 0.03
30 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (29 bp):
CAGTACAGTCGTGTGGCCTAAGCCCAATA
Found at i:26903672 original size:27 final size:27
Alignment explanation
Indices: 26903641--26903711 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
26903631 ATTGTAAATA
* *
26903641 TGGCAAAGCCACCAGTATCAGT-AATTG
1 TGGCATAGCCACCAGTAACAGTGAA-TG
26903668 TGGCATAGCCACCAGTAACAGTGAATG
1 TGGCATAGCCACCAGTAACAGTGAATG
* *
26903695 TGACATAGTCACCAGTA
1 TGGCATAGCCACCAGTA
26903712 CTTCCTCCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 37 0.95
28 2 0.05
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
TGGCATAGCCACCAGTAACAGTGAATG
Found at i:26903878 original size:27 final size:27
Alignment explanation
Indices: 26903848--26904010 Score: 125
Period size: 27 Copynumber: 6.1 Consensus size: 27
26903838 GGCATAATCA
* *
26903848 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCCTACAAGGGCATTACGG
* * * *
26903875 TCATTTTACCTTACAGGGGTATTA-TG
1 TCATTTTACCCTACAAGGGCATTACGG
* *** * *
26903901 -AATTTTACCCTTTTAGGGTATTACAG
1 TCATTTTACCCTACAAGGGCATTACGG
* * *
26903927 TCGTTTTACCCTACAGGGGCATTACAG
1 TCATTTTACCCTACAAGGGCATTACGG
* * *
26903954 TCATTTAACCCTACAGGGGCATTACGC
1 TCATTTTACCCTACAAGGGCATTACGG
*
26903981 TCATTTTACCTTA-AAGGGGCATTACGG
1 TCATTTTACCCTACAA-GGGCATTACGG
26904008 TCA
1 TCA
26904011 AATAACGACC
Statistics
Matches: 108, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
25 17 0.16
26 3 0.03
27 88 0.81
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAAGGGCATTACGG
Found at i:26909959 original size:39 final size:39
Alignment explanation
Indices: 26909912--26910093 Score: 238
Period size: 39 Copynumber: 4.6 Consensus size: 39
26909902 AATGTTCGAG
26909912 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
26909951 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
26909990 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
26910029 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * * *
26910069 CCATAACCGGGCTATGTCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGC
26910094 GTTTGAACGA
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
39 96 0.77
40 28 0.23
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:26917680 original size:43 final size:43
Alignment explanation
Indices: 26917632--26917718 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
26917622 GATTAACGAG
* *
26917632 ATGTGATTATGTGTAAGACTATGTCTGGGACATTGGAATCATT
1 ATGTGATTATGTGTAAGACCATGTCTAGGACATTGGAATCATT
*
26917675 ATGTGATTATGTGTAAGACCATGTCTAGGACATTGGCATCATT
1 ATGTGATTATGTGTAAGACCATGTCTAGGACATTGGAATCATT
26917718 A
1 A
26917719 ATTAATTTCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.36
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATGTCTAGGACATTGGAATCATT
Found at i:26917732 original size:43 final size:43
Alignment explanation
Indices: 26917632--26917735 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
26917622 GATTAACGAG
* * *
26917632 ATGTGATTATGTGTAAGACTATGTCTGGGACATTGGAATCATT
1 ATGTAATTATGTGTAAGACCATGTCTAGGACATTGGAATCATT
* *
26917675 ATGTGATTATGTGTAAGACCATGTCTAGGACATTGGCATCATT
1 ATGTAATTATGTGTAAGACCATGTCTAGGACATTGGAATCATT
26917718 AAT-TAATT-TCGTGTAAGA
1 -ATGTAATTAT-GTGTAAGA
26917736 TCATAACTGG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
42 1 0.02
43 52 0.95
44 2 0.04
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.37
Consensus pattern (43 bp):
ATGTAATTATGTGTAAGACCATGTCTAGGACATTGGAATCATT
Found at i:26920409 original size:43 final size:43
Alignment explanation
Indices: 26920361--26920511 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 43
26920351 GATTAGCAAG
** *
26920361 ATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCATT
*
26920404 ATGTGATTACATGTAAGACCATATTTGGGACATTGGCAT-AGTT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCA-TT
* * * *
26920447 AAT-TAATTTCATGTGAGACCATAGCTGGG-CTATTGGCATCGA-T
1 -ATGTGATTACATGTAAGACCATATCTGGGAC-ATTGGCATC-ATT
*
26920490 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
26920512 GTCTTGGATA
Statistics
Matches: 89, Mismatches: 13, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
42 4 0.04
43 82 0.92
44 2 0.02
45 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCATT
Found at i:26929674 original size:43 final size:43
Alignment explanation
Indices: 26929627--26929730 Score: 147
Period size: 43 Copynumber: 2.4 Consensus size: 43
26929617 TAGCCCAGCT
* *
26929627 ATGGTCTTACACAAAATTA-ATTAACGATGCCAATGTCCCATAC
1 ATGGTCTTACACAAAATCACA-TAACGATGCCAATGTCCCAGAC
* *
26929670 ATGGTCTTACACATAATCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACAAAATCACATAACGATGCCAATGTCCCAGAC
*
26929713 ATGGTCTTACACATAATC
1 ATGGTCTTACACAAAATC
26929731 GCATCTCGTT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
43 55 0.98
44 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACAAAATCACATAACGATGCCAATGTCCCAGAC
Found at i:26929721 original size:86 final size:85
Alignment explanation
Indices: 26929568--26929725 Score: 205
Period size: 86 Copynumber: 1.8 Consensus size: 85
26929558 AGCTTGTATA
** * *
26929568 ATGCCATATCCCATACATGGTCTTACATGTTATCACATATCGATGACGATAGCCCAGCTATGGTC
1 ATGCCATATCCCATACATGGTCTTACACATAATCACATATCGATGACAATAGCCCAGCTATGGTC
26929633 TTACACAAAATTAATTAACG
66 TTACACAAAATTAATTAACG
* *
26929653 ATGCCAATGTCCCATACATGGTCTTACACATAATCACATAAT-GATGCCAAT-GTCCCAGAC-AT
1 ATGCC-ATATCCCATACATGGTCTTACACATAATCACAT-ATCGATGACAATAG-CCCAG-CTAT
26929715 GGTCTTACACA
62 GGTCTTACACA
26929726 TAATCGCATC
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
85 6 0.10
86 54 0.86
87 3 0.05
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (85 bp):
ATGCCATATCCCATACATGGTCTTACACATAATCACATATCGATGACAATAGCCCAGCTATGGTC
TTACACAAAATTAATTAACG
Found at i:26931457 original size:53 final size:53
Alignment explanation
Indices: 26931274--26931475 Score: 233
Period size: 53 Copynumber: 3.8 Consensus size: 53
26931264 GACGTTGAAT
* * * *
26931274 GACCATACCATGTAAGACCGTAACTTGTGGGTTATGACATCATATGGAAGGAA
1 GACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATCATATGGAAAGAA
* * * *
26931327 GCCCATATCATGTAAGACCGTAATTGGTGGGTTATTACATCATATGGAAAGAA
1 GACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATCATATGGAAAGAA
* * * * *
26931380 GACCATATTGTGTAAGAACATAACTGGTGGGTTATGGCATCATATGAAAAGAA
1 GACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATCATATGGAAAGAA
* ** * * *
26931433 GACCATGTCGTGTAAGATTGTAACTAGTGGATTATGGCATCAT
1 GACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATCAT
26931476 GTGGGAAAAA
Statistics
Matches: 127, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 127 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (53 bp):
GACCATATCGTGTAAGACCGTAACTGGTGGGTTATGACATCATATGGAAAGAA
Found at i:26931664 original size:29 final size:28
Alignment explanation
Indices: 26931632--26931728 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 28
26931622 GTTTAATGAC
*
26931632 GCCTTTGTGGCAAAACTTTGGAAAGGTAA
1 GCCTTTGTGGCAAAACTAT-GAAAGGTAA
* *
26931661 GCCTTTGTGGAAAAACTATGAAAGGCCAA
1 GCCTTTGTGGCAAAACTATGAAAGG-TAA
* *
26931690 -ACTTTGTGCCAAAACTCTAT-AAAGGTAA
1 GCCTTTGTGGCAAAA--CTATGAAAGGTAA
26931718 GCCTTTGTGGC
1 GCCTTTGTGGC
26931729 GAACTTTTTA
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
28 19 0.35
29 32 0.58
30 4 0.07
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (28 bp):
GCCTTTGTGGCAAAACTATGAAAGGTAA
Found at i:26931787 original size:27 final size:27
Alignment explanation
Indices: 26931757--26931820 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 27
26931747 CTTTATGGAA
* *
26931757 AATCTCTAAAAGGAAAGCTTCTGTGGC
1 AATCTCTAAAAGGAAAGCCTCTGAGGC
*
26931784 AATCTCTGTTAAAGGAAAGCCTCTGAGGC
1 AATCTC--TAAAAGGAAAGCCTCTGAGGC
*
26931813 AAACTCTA
1 AATCTCTA
26931821 GGCAGGAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
27 7 0.23
29 23 0.77
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATCTCTAAAAGGAAAGCCTCTGAGGC
Found at i:26937834 original size:29 final size:28
Alignment explanation
Indices: 26937762--26937885 Score: 128
Period size: 27 Copynumber: 4.5 Consensus size: 28
26937752 ATTTCCATAG
* *
26937762 AGGCTTCCA-TCTCATAG-TTCTCCACAA
1 AGGCTTCCATTTTCATAGATT-GCCACAA
*
26937789 AGGCTACCATTTTCATAGATTGCCACAA
1 AGGCTTCCATTTTCATAGATTGCCACAA
*
26937817 AAGCTTCCATTTCTCATAGATTGCCACAA
1 AGGCTTCCATTT-TCATAGATTGCCACAA
* * ** *
26937846 AGGCTTCCATGTT-ATAGACTATCATAA
1 AGGCTTCCATTTTCATAGATTGCCACAA
26937873 AGGCTTCCATTTT
1 AGGCTTCCATTTT
26937886 TCTAGTGTGT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
27 30 0.37
28 24 0.29
29 28 0.34
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (28 bp):
AGGCTTCCATTTTCATAGATTGCCACAA
Found at i:26942158 original size:15 final size:17
Alignment explanation
Indices: 26942138--26942170 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26942128 ATTCTAATTG
26942138 GAAGCAT-G-AACAACT
1 GAAGCATAGAAACAACT
26942153 GAAGCATAGAAACAACT
1 GAAGCATAGAAACAACT
26942170 G
1 G
26942171 TTGCGTGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.48, C:0.18, G:0.21, T:0.12
Consensus pattern (17 bp):
GAAGCATAGAAACAACT
Found at i:26959140 original size:52 final size:52
Alignment explanation
Indices: 26959073--26959176 Score: 149
Period size: 52 Copynumber: 2.0 Consensus size: 52
26959063 ATATGTATAC
* *
26959073 GGCACCCGAGCTCGTTGAGTTGGT-TCGAGTTCATGAT-AGATGCGATGCATGT
1 GGCACCCGAGCTCGTTGAGTTGGTCT-GAGTTCATAATGA-ATGCGATACATGT
*
26959125 GGCATCCGAGCTCGTTGAGTTGGTCTGAGTTCATAATGAATGCGATACATGT
1 GGCACCCGAGCTCGTTGAGTTGGTCTGAGTTCATAATGAATGCGATACATGT
26959177 AATTGGGTTC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
52 45 0.96
53 2 0.04
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (52 bp):
GGCACCCGAGCTCGTTGAGTTGGTCTGAGTTCATAATGAATGCGATACATGT
Found at i:26962385 original size:27 final size:27
Alignment explanation
Indices: 26962355--26962431 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
26962345 AATTTCATAT
* *
26962355 CTGTAGGCTAGTATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATGCCC
26962382 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATGCCC
* *
26962409 CTATAGGGTAGAATTACCGAAAT
1 CTGTAGGGTAGAATTACTGAAAT
26962432 ACCCTTGGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATGCCC
Found at i:26962450 original size:27 final size:27
Alignment explanation
Indices: 26962420--26962766 Score: 155
Period size: 27 Copynumber: 12.8 Consensus size: 27
26962410 TATAGGGTAG
26962420 AATTACCGAAATACCCTTGGTTTACAA
1 AATTACCGAAATACCCTTGGTTTACAA
* *
26962447 AATTACTG-AATACTCTTGGTTTACAA
1 AATTACCGAAATACCCTTGGTTTACAA
* * *
26962473 AATTACCAAAATACCCTT-GATTAGGAA
1 AATTACCGAAATACCCTTGGTTTA-CAA
* * **
26962500 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCGAAATACCCTTGGTTTACAA
* *
26962527 AATTACCCAAATACCCCTTGGTTTATAA
1 AATTACCGAAATA-CCCTTGGTTTACAA
** * ** ***
26962555 AATTACTAAAATACCCCTAATTTGGGA
1 AATTACCGAAATACCCTTGGTTTACAA
** * *
26962582 AATTACTAAAAATACCCTCGATTT-CTAA
1 AATTAC-CGAAATACCCTTGGTTTAC-AA
* ** **
26962610 AATTACC-AACATACCCCTAATTTGGAA
1 AATTACCGAA-ATACCCTTGGTTTACAA
* * ** **
26962637 AATTACTGAAATACCTTTAATTTGGAA
1 AATTACCGAAATACCCTTGGTTTACAA
** ***
26962664 AATTATAGAAATACCCTAAATTTACAA
1 AATTACCGAAATACCCTTGGTTTACAA
* * * *
26962691 AATTACAGAATTACCATTGACTTT-CAAA
1 AATTACCGAAATACCCTTG-GTTTAC-AA
* * *
26962719 AATTACAGAAATACCATTGGTTTGCAA
1 AATTACCGAAATACCCTTGGTTTACAA
** *
26962746 AATTAGTGAAATACTCTTGGT
1 AATTACCGAAATACCCTTGGT
26962767 CTGTAGATTT
Statistics
Matches: 254, Mismatches: 54, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
26 29 0.11
27 153 0.60
28 72 0.28
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGGTTTACAA
Found at i:26962458 original size:26 final size:27
Alignment explanation
Indices: 26962420--26962570 Score: 162
Period size: 27 Copynumber: 5.6 Consensus size: 27
26962410 TATAGGGTAG
*
26962420 AATTACCGAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTACAA
** *
26962447 AATTA-CTGAATACTCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTACAA
* *
26962473 AATTACCAAAATACCCTT-GATTAGGAA
1 AATTACCAAAATACCCTTGGTTTA-CAA
* **
26962500 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTACAA
* *
26962527 AATTACCCAAATACCCCTTGGTTTATAA
1 AATTACCAAAATA-CCCTTGGTTTACAA
*
26962555 AATTACTAAAATACCC
1 AATTACCAAAATACCC
26962571 CTAATTTGGG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
26 27 0.26
27 50 0.49
28 26 0.25
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTACAA
Found at i:26962537 original size:28 final size:27
Alignment explanation
Indices: 26962471--26962668 Score: 173
Period size: 27 Copynumber: 7.3 Consensus size: 27
26962461 CTTGGTTTAC
* *
26962471 AAAATTACCAAAATACCCTTGATTAGG
1 AAAATTACCAAAATACCCCTGATTTGG
* *
26962498 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGG
* * **
26962525 AAAATTACCCAAATACCCCTTGGTTTAT
1 AAAATTACCAAAATACCCC-TGATTTGG
* *
26962553 AAAATTACTAAAATACCCCTAATTTGG
1 AAAATTACCAAAATACCCCTGATTTGG
* * **
26962580 GAAATTACTAAAAATA-CCCTCGATTTCT
1 AAAATTAC-CAAAATACCCCT-GATTTGG
* *
26962608 AAAATTACCAACATACCCCTAATTTGG
1 AAAATTACCAAAATACCCCTGATTTGG
** ** *
26962635 AAAATTACTGAAATACCTTTAATTTGG
1 AAAATTACCAAAATACCCCTGATTTGG
26962662 AAAATTA
1 AAAATTA
26962669 TAGAAATACC
Statistics
Matches: 139, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
27 94 0.68
28 45 0.32
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGG
Found at i:26962585 original size:55 final size:54
Alignment explanation
Indices: 26962420--26962651 Score: 198
Period size: 55 Copynumber: 4.3 Consensus size: 54
26962410 TATAGGGTAG
* * ** * * ** **
26962420 AATTACCGAAATACCCTTGGTTTACAAAATTA-CTGAATACTCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAATTTGGAA
* * ** *
26962473 AATTACCAAAATACCCTT-GATTAGGAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTA-TAAAATTACCAAAATACCCCTAATTTGGAA
* * *
26962527 AATTACCCAAATACCCCTTGGTTTATAAAATTACTAAAATACCCCTAATTTGGGA
1 AATTACCAAAATA-CCCTTGGTTTATAAAATTACCAAAATACCCCTAATTTGGAA
* * * * *
26962582 AATTACTAAAAATACCCTCGATTTCTAAAATTACCAACATACCCCTAATTTGGAA
1 AATTAC-CAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAATTTGGAA
**
26962637 AATTACTGAAATACC
1 AATTACCAAAATACC
26962652 TTTAATTTGG
Statistics
Matches: 147, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
52 4 0.03
53 24 0.16
54 34 0.23
55 76 0.52
56 9 0.06
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAATTTGGAA
Found at i:26962585 original size:82 final size:81
Alignment explanation
Indices: 26962420--26962668 Score: 243
Period size: 82 Copynumber: 3.1 Consensus size: 81
26962410 TATAGGGTAG
* * * ** * *
26962420 AATTACCGAAATACCCTTGGTTTACAAAATTACTGAATA-CTCTTGGTTTACAAAATTACCAAAA
1 AATTACCAAAATACCCCTGGTTTATAAAATTACCAAATACCCCTTGGTTTACAAAATTACTAAAA
* *
26962484 TACCCTTGATTAGGAA
66 TACCCTTAATTTGGAA
* *
26962500 AATTACCAAAATACCCCTGGTTTGTAAAATTACCCAAATACCCCTTGGTTTATAAAATTACTAAA
1 AATTACCAAAATACCCCTGGTTTATAAAATTA-CCAAATACCCCTTGGTTTACAAAATTACTAAA
* *
26962565 ATACCCCTAATTTGGGA
65 ATACCCTTAATTTGGAA
* * * ** ** *
26962582 AATTACTAAAAATA-CCCTCGATTTCTAAAATTACCAACATACCCC-TAATTTGGAAAATTACTG
1 AATTAC-CAAAATACCCCT-GGTTTATAAAATTACCAA-ATACCCCTTGGTTTACAAAATTACTA
*
26962645 AAATACCTTTAATTTGGAA
63 AAATACCCTTAATTTGGAA
26962664 AATTA
1 AATTA
26962669 TAGAAATACC
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
80 28 0.20
81 5 0.04
82 82 0.59
83 25 0.18
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGGTTTATAAAATTACCAAATACCCCTTGGTTTACAAAATTACTAAAA
TACCCTTAATTTGGAA
Found at i:26962678 original size:54 final size:54
Alignment explanation
Indices: 26962498--26962733 Score: 149
Period size: 55 Copynumber: 4.3 Consensus size: 54
26962488 CTTGATTAGG
** * ** **
26962498 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCCAAATACCCCTT-GGTTT-A
1 AAAATTACCAAAATACCCCTAATTTGGAAAATTACTGAAATA--CCTTCAATTTCA
* * * * * *
26962552 TAAAATTACTAAAATACCCCTAATTTGGGAAATTACTAAAAATACCCTCGATTTCT
1 -AAAATTACCAAAATACCCCTAATTTGGAAAATTACT-GAAATACCTTCAATTTCA
* * **
26962608 AAAATTACCAACATACCCCTAATTTGGAAAATTACTGAAATACCTTTAATTTGG
1 AAAATTACCAAAATACCCCTAATTTGGAAAATTACTGAAATACCTTCAATTTCA
* ** * * * *
26962662 AAAATTA-TAGAAATA-CCCTAAATTTACAAAATTACAGAATTACCATTGACTTTCA
1 AAAATTACCA-AAATACCCCT-AATTTGGAAAATTACTGAAATACC-TTCAATTTCA
26962717 AAAATTA-CAGAAATACC
1 AAAATTACCA-AAATACC
26962734 ATTGGTTTGC
Statistics
Matches: 144, Mismatches: 30, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
53 5 0.03
54 46 0.32
55 87 0.60
56 6 0.04
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAATTTGGAAAATTACTGAAATACCTTCAATTTCA
Found at i:26963074 original size:41 final size:41
Alignment explanation
Indices: 26963028--26963148 Score: 179
Period size: 41 Copynumber: 3.0 Consensus size: 41
26963018 CAGAGGAAGA
26963028 AATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCAAC
1 AATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCAAC
* * * *
26963069 GATTGAGGATCGCATGGTTGCTTAATGACCGTGGATCCACC
1 AATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCAAC
* * *
26963110 AATTAAGGATCGCATGGTTTCTTGACGACTGTGGATCCA
1 AATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCA
26963149 TCGGTGGCTT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (41 bp):
AATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCAAC
Found at i:26963330 original size:25 final size:25
Alignment explanation
Indices: 26963296--26963439 Score: 180
Period size: 25 Copynumber: 5.8 Consensus size: 25
26963286 AATTATTCTA
*
26963296 TTATCAATGGCTTTGTGCCGATCTG
1 TTATCGATGGCTTTGTGCCGATCTG
* *
26963321 TTATCGATGGCTTTGTACCGATATG
1 TTATCGATGGCTTTGTGCCGATCTG
* * **
26963346 ATATTGATGGCAATGTGCCGATCTG
1 TTATCGATGGCTTTGTGCCGATCTG
* *
26963371 TTATCGATGGCATTGTGCCGATATG
1 TTATCGATGGCTTTGTGCCGATCTG
* * *
26963396 ATATTGATGGCTATGTGCCGATCTG
1 TTATCGATGGCTTTGTGCCGATCTG
26963421 TTATCGATGGCTTTGTGCC
1 TTATCGATGGCTTTGTGCC
26963440 AAGTGTATTA
Statistics
Matches: 98, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 98 1.00
ACGTcount: A:0.19, C:0.17, G:0.26, T:0.38
Consensus pattern (25 bp):
TTATCGATGGCTTTGTGCCGATCTG
Found at i:26963437 original size:50 final size:50
Alignment explanation
Indices: 26963302--26963439 Score: 240
Period size: 50 Copynumber: 2.8 Consensus size: 50
26963292 TCTATTATCA
* *
26963302 ATGGCTTTGTGCCGATCTGTTATCGATGGCTTTGTACCGATATGATATTG
1 ATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCCGATATGATATTG
* *
26963352 ATGGCAATGTGCCGATCTGTTATCGATGGCATTGTGCCGATATGATATTG
1 ATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCCGATATGATATTG
26963402 ATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
1 ATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
26963440 AAGTGTATTA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 82 1.00
ACGTcount: A:0.18, C:0.17, G:0.28, T:0.37
Consensus pattern (50 bp):
ATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCCGATATGATATTG
Found at i:26966241 original size:26 final size:27
Alignment explanation
Indices: 26966201--26966274 Score: 105
Period size: 26 Copynumber: 2.8 Consensus size: 27
26966191 CCTATAGGGT
26966201 AGAATTACTGAAATACCCTTGGTTTAC
1 AGAATTACTGAAATACCCTTGGTTTAC
*
26966228 AGAATTACTG-AATACTCTTGGTTTAC
1 AGAATTACTGAAATACCCTTGGTTTAC
* **
26966254 AAAATTACCAAAATACCCTTG
1 AGAATTACTGAAATACCCTTG
26966275 ATTAGGAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 22 0.54
27 19 0.46
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.32
Consensus pattern (27 bp):
AGAATTACTGAAATACCCTTGGTTTAC
Found at i:26966461 original size:81 final size:80
Alignment explanation
Indices: 26966249--26966540 Score: 277
Period size: 81 Copynumber: 3.6 Consensus size: 80
26966239 ATACTCTTGG
* * *
26966249 TTTACAAAATTACCAAAATACCCTTGATTAGGAAAATTAGCA-AAATACCC-CCAGTTTGTAAAA
1 TTTAGAAAATTACCAAAATACCCTTGATTTGGAAAATTA-CAGAAATACCCTCGA-TTTGTAAAA
**
26966312 TTACCCAAATACCCCTGG
64 TTA-CCAAATACCCCTAA
* * *
26966330 TTTATAAAATTACCAAAATACCCCTGATTTGTG-AAATTACTGAAATACCCTCGATTTGTAAAAT
1 TTTAGAAAATTACCAAAATACCCTTGATTTG-GAAAATTACAGAAATACCCTCGATTTGTAAAAT
26966394 TACCAACATACCCCTAA
65 TACCAA-ATACCCCTAA
* * * **
26966411 TTTGGAAAATTACCGAAATACCCTTGATTTGGAAAATTACAGAAATACCCTTGATTTACAAAATT
1 TTTAGAAAATTACCAAAATACCCTTGATTTGGAAAATTACAGAAATACCCTCGATTTGTAAAATT
* ** *
26966476 ACAGAAATACCATTGAC
66 AC-CAAATACCCCT-AA
* * * * * *
26966493 TTTCA-AAAATTGCAAAAATACCATTGGTTTGCAAAATTACCGAAATAC
1 TTT-AGAAAATTACCAAAATACCCTTGATTTGGAAAATTACAGAAATAC
26966541 TCTTGGTCTG
Statistics
Matches: 176, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
80 6 0.03
81 125 0.71
82 45 0.26
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (80 bp):
TTTAGAAAATTACCAAAATACCCTTGATTTGGAAAATTACAGAAATACCCTCGATTTGTAAAATT
ACCAAATACCCCTAA
Found at i:26966474 original size:54 final size:54
Alignment explanation
Indices: 26966203--26966545 Score: 269
Period size: 54 Copynumber: 6.4 Consensus size: 54
26966193 TATAGGGTAG
* * ** * ** * * *
26966203 AATTACTGAAATACCCTTGGTTTACAGAATTA-CTGAATACTCTTGGTTTACAA
1 AATTACCGAAATACCCTTGATTTGGAAAATTACCAAAATACCCTTGATTTGCAA
* * * ** *
26966256 AATTACCAAAATACCCTTGATTAGGAAAATTAGCAAAATACCC-CCAGTTTGTAA
1 AATTACCGAAATACCCTTGATTTGGAAAATTACCAAAATACCCTTGA-TTTGCAA
* * * ** * **
26966310 AATTACCCAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTGATTTGTGA
1 AATTACCGAAATACCCTTGATTTGGAAAATTACCAAAATACCCTTGATTTGCAA
* * * * * * *
26966364 AATTACTGAAATACCCTCGATTTGTAAAATTACCAACATACCCCTAATTTGGAA
1 AATTACCGAAATACCCTTGATTTGGAAAATTACCAAAATACCCTTGATTTGCAA
*
26966418 AATTACCGAAATACCCTTGATTTGGAAAATTA-CAGAAATACCCTTGATTTACAA
1 AATTACCGAAATACCCTTGATTTGGAAAATTACCA-AAATACCCTTGATTTGCAA
* * ** * * * *
26966472 AATTACAGAAATACCATTGACTTTCAAAAATTGCAAAAATACCATTGGTTTGCAA
1 AATTACCGAAATACCCTTGA-TTTGGAAAATTACCAAAATACCCTTGATTTGCAA
*
26966527 AATTACCGAAATACTCTTG
1 AATTACCGAAATACCCTTG
26966546 GTCTGTAGAT
Statistics
Matches: 229, Mismatches: 55, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
53 27 0.12
54 159 0.69
55 42 0.18
56 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGATTTGGAAAATTACCAAAATACCCTTGATTTGCAA
Found at i:26966547 original size:27 final size:27
Alignment explanation
Indices: 26966203--26966545 Score: 244
Period size: 27 Copynumber: 12.7 Consensus size: 27
26966193 TATAGGGTAG
* * * *
26966203 AATTACTGAAATACCCTTGGTTTACAG
1 AATTACCGAAATACCCTTGATTTGCAA
* * * *
26966230 AATTACTG-AATACTCTTGGTTTACAA
1 AATTACCGAAATACCCTTGATTTGCAA
* * *
26966256 AATTACCAAAATACCCTTGATTAGGAA
1 AATTACCGAAATACCCTTGATTTGCAA
* * ** *
26966283 AATTAGCAAAATACCC-CCAGTTTGTAA
1 AATTACCGAAATACCCTTGA-TTTGCAA
* * * **
26966310 AATTACCCAAATACCCCTGGTTTATAA
1 AATTACCGAAATACCCTTGATTTGCAA
* * **
26966337 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACCGAAATACCCTTGATTTGCAA
* * *
26966364 AATTACTGAAATACCCTCGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGCAA
* * *
26966391 AATTACC-AACATACCCCTAATTTGGAA
1 AATTACCGAA-ATACCCTTGATTTGCAA
*
26966418 AATTACCGAAATACCCTTGATTTGGAA
1 AATTACCGAAATACCCTTGATTTGCAA
* *
26966445 AATTACAGAAATACCCTTGATTTACAA
1 AATTACCGAAATACCCTTGATTTGCAA
* *
26966472 AATTACAGAAATACCATTGACTTT-CAAA
1 AATTACCGAAATACCCTTGA-TTTGC-AA
* ** * *
26966500 AATTGCAAAAATACCATTGGTTTGCAA
1 AATTACCGAAATACCCTTGATTTGCAA
*
26966527 AATTACCGAAATACTCTTG
1 AATTACCGAAATACCCTTG
26966546 GTCTGTAGAT
Statistics
Matches: 260, Mismatches: 48, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
26 25 0.10
27 210 0.81
28 25 0.10
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTGCAA
Found at i:26966855 original size:41 final size:41
Alignment explanation
Indices: 26966810--26966929 Score: 150
Period size: 41 Copynumber: 2.9 Consensus size: 41
26966800 GTATAAAGAA
* *
26966810 ATTGAGGATCGCATGGTTGCTTGACGACCATGGATCCAACG
1 ATTGAGGATCTCATGGTTGCTTGACGACCGTGGATCCAACG
* * * *
26966851 ATTGAGGATCTCATGGTTGTTTGATGACTGTGGATCCACCG
1 ATTGAGGATCTCATGGTTGCTTGACGACCGTGGATCCAACG
* * * *
26966892 GTTAAAGATCTCATGGTTGCTTGACGATCGTGGATCCA
1 ATTGAGGATCTCATGGTTGCTTGACGACCGTGGATCCA
26966930 TCGGTGGCTT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (41 bp):
ATTGAGGATCTCATGGTTGCTTGACGACCGTGGATCCAACG
Found at i:26967123 original size:25 final size:25
Alignment explanation
Indices: 26967077--26967220 Score: 126
Period size: 25 Copynumber: 5.8 Consensus size: 25
26967067 TATTATTCTA
* * *
26967077 TTATCAATGGCTTTATGTCGATCTG
1 TTATCGATGGCTTTGTGCCGATCTG
* *
26967102 TTATCGATGGCTTTGTACCGATATG
1 TTATCGATGGCTTTGTGCCGATCTG
* * **
26967127 ATATTGATGGCAATGTGCCGATCTG
1 TTATCGATGGCTTTGTGCCGATCTG
* * * *
26967152 TTATCGATAGCATTGTACCGATATG
1 TTATCGATGGCTTTGTGCCGATCTG
* * * *
26967177 ATATTGATGGCTATGTGCTGATCTG
1 TTATCGATGGCTTTGTGCCGATCTG
*
26967202 TTATCGAAGGCTTTGTGCC
1 TTATCGATGGCTTTGTGCC
26967221 AAGTGTATTA
Statistics
Matches: 89, Mismatches: 30, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
25 89 1.00
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.38
Consensus pattern (25 bp):
TTATCGATGGCTTTGTGCCGATCTG
Found at i:26967149 original size:50 final size:50
Alignment explanation
Indices: 26967095--26967217 Score: 201
Period size: 50 Copynumber: 2.5 Consensus size: 50
26967085 GGCTTTATGT
26967095 CGATCTGTTATCGATGGCTTTGTACCGATATGATATTGATGGCAATGTGC
1 CGATCTGTTATCGATGGCTTTGTACCGATATGATATTGATGGCAATGTGC
* * *
26967145 CGATCTGTTATCGATAGCATTGTACCGATATGATATTGATGGCTATGTGC
1 CGATCTGTTATCGATGGCTTTGTACCGATATGATATTGATGGCAATGTGC
* *
26967195 TGATCTGTTATCGAAGGCTTTGT
1 CGATCTGTTATCGATGGCTTTGT
26967218 GCCAAGTGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.37
Consensus pattern (50 bp):
CGATCTGTTATCGATGGCTTTGTACCGATATGATATTGATGGCAATGTGC
Found at i:26973067 original size:42 final size:43
Alignment explanation
Indices: 26973006--26973104 Score: 123
Period size: 43 Copynumber: 2.3 Consensus size: 43
26972996 GTTGAAATTA
* *
26973006 CGTGTAAGACCATATCTGGGATAT-GGCATC-GATATGAGA-CTT
1 CGTGTAAGACCATAGCTGGGATATCGGCATCAG-TATGAGATC-C
*
26973048 CGTGTAAGACCATAGCTGGGCTATCGGCATCAGTATGAGATCC
1 CGTGTAAGACCATAGCTGGGATATCGGCATCAGTATGAGATCC
*
26973091 CATGTAAGACCATA
1 CGTGTAAGACCATA
26973105 TGTGACACCC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
42 22 0.44
43 26 0.52
44 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (43 bp):
CGTGTAAGACCATAGCTGGGATATCGGCATCAGTATGAGATCC
Found at i:26974891 original size:40 final size:40
Alignment explanation
Indices: 26974809--26974959 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 40
26974799 AAATTGAATG
* * ** ** *
26974809 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCACT
* * **
26974848 ATATCCGGGTTAAGACTCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCACT
* *
26974888 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTCACT
* *
26974928 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
26974960 CCGGTTATAT
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCACT
Found at i:26976458 original size:20 final size:20
Alignment explanation
Indices: 26976430--26976476 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
26976420 CAGCAAAGTT
26976430 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
26976450 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
26976470 TAAGTTG
1 TAAGTTG
26976477 CAAGTTTGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.02, G:0.30, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:26987254 original size:43 final size:42
Alignment explanation
Indices: 26987193--26987273 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 42
26987183 AATGGCAACA
* *
26987193 TCCCAGACGTAGTCTTACATGTAATCAAATATCGATGCCTCTG
1 TCCCAGACGTAGTCTTACACGAAATCAAATAT-GATGCCTCTG
26987236 TCCCAGACAG-AGTCTTACACGAAATCAAATATGATGCC
1 TCCCAGAC-GTAGTCTTACACGAAATCAAATATGATGCC
26987274 AACATCCCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
42 6 0.17
43 28 0.80
44 1 0.03
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (42 bp):
TCCCAGACGTAGTCTTACACGAAATCAAATATGATGCCTCTG
Found at i:26992996 original size:51 final size:48
Alignment explanation
Indices: 26992878--26993060 Score: 208
Period size: 49 Copynumber: 3.7 Consensus size: 48
26992868 AGGCTATTTG
*
26992878 GTACGCATAGTAGCCTGCACTTAGTACTACACATACGG-CCAATTATCTG-
1 GTACACATAGTAGCCTGCACTTAGTACTACAC--ACGGACCAATTATC-GA
* *
26992927 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACG-GA-CCAA-TTATCGA
* * * *
26992978 GTACGCATAGTAGCCTGCACTTAGTCCTACACATGCGACCAATTATCCA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACG-GACCAATTATCGA
**
26993027 GTACATGTAGTAGCCTGCACTTAGTACTACACAC
1 GTACACATAGTAGCCTGCACTTAGTACTACACAC
26993061 CTGACCTCAC
Statistics
Matches: 114, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
47 3 0.03
48 1 0.01
49 65 0.57
50 7 0.06
51 38 0.33
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (48 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGGACCAATTATCGA
Found at i:26993020 original size:100 final size:100
Alignment explanation
Indices: 26992878--26993060 Score: 312
Period size: 100 Copynumber: 1.8 Consensus size: 100
26992868 AGGCTATTTG
* **
26992878 GTACGCATAGTAGCCTGCACTTAGTACTACACATACGGCCAATTATCTGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCAGTACACGTAGTAGCCT
26992943 GCACTTAGTACTACACACGTGATCGAAGTTATCGA
66 GCACTTAGTACTACACACGTGATCGAAGTTATCGA
* * *
26992978 GTACGCATAGTAGCCTGCACTTAGTCCTACACATGCGACCAATTATCCAGTACATGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCAGTACACGTAGTAGCCT
26993043 GCACTTAGTACTACACAC
66 GCACTTAGTACTACACAC
26993061 CTGACCTCAC
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCAGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTTATCGA
Found at i:26993329 original size:27 final size:27
Alignment explanation
Indices: 26993289--26993342 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
26993279 AGGTACAACC
* *
26993289 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
26993316 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
26993343 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:27009691 original size:22 final size:25
Alignment explanation
Indices: 27009664--27009710 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
27009654 TAAAAACACC
27009664 AATAT-ATT-TAA-TAACATAACTG
1 AATATAATTATAACTAACATAACTG
27009686 AATATACATTATAACTAACATAACT
1 AATATA-ATTATAACTAACATAACT
27009711 TCTTTATCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 5 0.24
24 3 0.14
25 3 0.14
26 10 0.48
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.34
Consensus pattern (25 bp):
AATATAATTATAACTAACATAACTG
Found at i:27012265 original size:45 final size:41
Alignment explanation
Indices: 27012160--27012279 Score: 125
Period size: 41 Copynumber: 2.8 Consensus size: 41
27012150 ATGCTATCTC
* * * *
27012160 ATATCGATACCACTGTCCCAGATAGGGTCTTACATGAATCGA
1 ATATCGATGCCAC-GTCCCAGATATGGTCTTACATGAAACAA
*
27012202 ATAT-GATGCCGATGTCCCAGATATGGTCTTACATGCAACCACAA
1 ATATCGATGCC-ACGTCCCAGATATGGTCTTACATG-AA--ACAA
*
27012246 ATATCGATGCCAACGTCCCAGATGTGGTCTTACA
1 ATATCGATGCC-ACGTCCCAGATATGGTCTTACA
27012280 CAAAATCACA
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
41 26 0.40
42 7 0.11
44 6 0.09
45 26 0.40
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (41 bp):
ATATCGATGCCACGTCCCAGATATGGTCTTACATGAAACAA
Found at i:27013392 original size:14 final size:15
Alignment explanation
Indices: 27013375--27013403 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
27013365 TCACGAAAAT
27013375 TTCACACAT-ATAAA
1 TTCACACATAATAAA
27013389 TTCACACATAATAAA
1 TTCACACATAATAAA
27013404 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:27026391 original size:14 final size:15
Alignment explanation
Indices: 27026374--27026402 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
27026364 TCATGAAAAT
27026374 TTCACACAT-ATAAA
1 TTCACACATAATAAA
27026388 TTCACACATAATAAA
1 TTCACACATAATAAA
27026403 CAAAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:27031604 original size:40 final size:40
Alignment explanation
Indices: 27031560--27031729 Score: 322
Period size: 40 Copynumber: 4.2 Consensus size: 40
27031550 GTAACAATCA
*
27031560 GCACGAATGCCTTCGGGACTTAACCCGATTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
27031600 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
27031640 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
*
27031680 GCACGAATGCCTTCGGGACTTAAACCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
27031720 GCACGAATGC
1 GCACGAATGC
27031730 TATGCACATA
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 128 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
Found at i:27036153 original size:93 final size:93
Alignment explanation
Indices: 27036041--27036210 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
27036031 GCCCCTAAGT
* *
27036041 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAAGTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TCAGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
27036105 ACGAGTTCGGATGTCTAGTTACATCTCAC
65 ACGAGTTCGGATGTCTAGTTACATCTCAC
** *
27036134 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
27036199 CGAGTTCGGATG
66 CGAGTTCGGATG
27036211 CTCAACCATC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 3 0.04
93 68 0.96
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTCAGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGTCTAGTTACATCTCAC
Found at i:27036197 original size:46 final size:46
Alignment explanation
Indices: 27036036--27036204 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
27036026 AACCCGCCCC
* *
27036036 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTAGGACATTCGCATCCA
* * * *
27036082 TAAGTGAAGTCAGACTCAACTCAACGAGTTCGGATGTCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTAGGA---C-A-TTCGCATCCA
* * *
27036130 TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTAGGACATTCGCATCCA
27036175 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
27036205 CGGATGCTCA
Statistics
Matches: 99, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 5 0.05
46 51 0.52
47 26 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTAGGACATTCGCATCCA
Found at i:27036664 original size:30 final size:30
Alignment explanation
Indices: 27036630--27036690 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
27036620 CATTTAATAC
27036630 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
27036660 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
27036690 A
1 A
27036691 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:27045632 original size:27 final size:28
Alignment explanation
Indices: 27045575--27045644 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
27045565 AAACTTGTAC
*
27045575 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
27045603 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
27045630 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
27045645 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:27045655 original size:27 final size:27
Alignment explanation
Indices: 27045575--27045656 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
27045565 AAACTTGTAC
* * *
27045575 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
27045603 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
27045630 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
27045657 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:27050758 original size:42 final size:42
Alignment explanation
Indices: 27050708--27050820 Score: 129
Period size: 43 Copynumber: 2.7 Consensus size: 42
27050698 TTGAGATTAC
*
27050708 ATGTAAGACCATAACTAGGATATGGCATCGATATGAGACTTC-
1 ATGTAAGACCATAACTAGGATATGGCATCGATATGAGA-TCCA
* * * * * *
27050750 GTGTAAGACCATAGCTGGGCTATTGGTACCGATATGAGATCCA
1 ATGTAAGACCATAACTAGGATA-TGGCATCGATATGAGATCCA
*
27050793 ATGTAAGACCATATCTAGGATATGGCAT
1 ATGTAAGACCATAACTAGGATATGGCAT
27050821 TGGTATGGTA
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
42 24 0.43
43 32 0.57
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (42 bp):
ATGTAAGACCATAACTAGGATATGGCATCGATATGAGATCCA
Found at i:27050949 original size:20 final size:20
Alignment explanation
Indices: 27050903--27050949 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
27050893 CGGTAAAGCT
* *
27050903 TAAGTTATGAAAGACTATGG
1 TAAGTTGTGAAAGACTATAG
* *
27050923 TATGTTGTGAAAGATTATAG
1 TAAGTTGTGAAAGACTATAG
27050943 TAAGTTG
1 TAAGTTG
27050950 CAAGTTTGGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATAG
Found at i:27054548 original size:39 final size:39
Alignment explanation
Indices: 27054494--27054571 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
27054484 TAAAATTGTA
27054494 ATTAATGGACACAGTACTTAATCAGTACATGTTTATTCT
1 ATTAATGGACACAGTACTTAATCAGTACATGTTTATTCT
*
27054533 ATTAATGGACACAGTACTTAATCAGTGCATGTTTATTCT
1 ATTAATGGACACAGTACTTAATCAGTACATGTTTATTCT
27054572 TCTAGGGTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (39 bp):
ATTAATGGACACAGTACTTAATCAGTACATGTTTATTCT
Found at i:27057770 original size:27 final size:27
Alignment explanation
Indices: 27057708--27057770 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
27057698 TACCTAGACC
*
27057708 CCCTTTATGGTAAAACGACTATATTGG
1 CCCTTTATGGTAAAACGACCATATTGG
* * *
27057735 CCCTGTATGGTAAAATGACCAT-TTTG
1 CCCTTTATGGTAAAACGACCATATTGG
27057761 CCCTTATATG
1 CCCTT-TATG
27057771 CTAAGATGGC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
CCCTTTATGGTAAAACGACCATATTGG
Found at i:27059636 original size:40 final size:40
Alignment explanation
Indices: 27059592--27059699 Score: 171
Period size: 40 Copynumber: 2.7 Consensus size: 40
27059582 CTACTCGCTT
* *
27059592 AAATGCCTTCGGGACTTAGCCCGGTTTTAGTAGCTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* **
27059632 AAATGCCTTCGGGGCTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
27059672 AAATGCCTTCGGGACTTAGCCCGGTTAT
1 AAATGCCTTCGGGACTTAGCCCGGTTAT
27059700 CATCCGAGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
Found at i:27068635 original size:40 final size:40
Alignment explanation
Indices: 27068576--27068742 Score: 244
Period size: 40 Copynumber: 4.2 Consensus size: 40
27068566 CATTTGAATG
*
27068576 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
27068616 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
27068656 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * *
27068696 ATGTCCGGGTTAAGACCCAAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
27068736 ATATCCG
1 ATATCCG
27068743 ACTAAATCCC
Statistics
Matches: 114, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 114 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:27070892 original size:20 final size:19
Alignment explanation
Indices: 27070867--27070925 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 19
27070857 TAATAAAAAA
27070867 AATTATAATTATTAATATAT
1 AATTATAATTA-TAATATAT
27070887 AATTATATCCATTATAATATAT
1 AATTATA---ATTATAATATAT
27070909 -A-T-TAATTATAATATAT
1 AATTATAATTATAATATAT
27070925 A
1 A
27070926 TTAATTATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
16 12 0.34
19 2 0.06
20 8 0.23
21 1 0.03
22 8 0.23
23 4 0.11
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
AATTATAATTATAATATAT
Found at i:27070916 original size:16 final size:16
Alignment explanation
Indices: 27070876--27070933 Score: 82
Period size: 16 Copynumber: 3.6 Consensus size: 16
27070866 AAATTATAAT
27070876 TATTAATATATAAT-TA
1 TATTAAT-TATAATATA
**
27070892 TATCCATTATAATATA
1 TATTAATTATAATATA
27070908 TATTAATTATAATATA
1 TATTAATTATAATATA
27070924 TATTAATTAT
1 TATTAATTAT
27070934 TATCAACTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
15 6 0.16
16 31 0.84
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTAATTATAATATA
Found at i:27089834 original size:29 final size:29
Alignment explanation
Indices: 27089802--27089869 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
27089792 CATCTGGCAG
27089802 AGTTCATATTCTTATGGCCCATTAGGCCC
1 AGTTCATATTCTTATGGCCCATTAGGCCC
27089831 AGTTCATATTCTTATGGCCCATTAGGCCC
1 AGTTCATATTCTTATGGCCCATTAGGCCC
**
27089860 AAATCATATT
1 AGTTCATATT
27089870 ATATTCATGC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (29 bp):
AGTTCATATTCTTATGGCCCATTAGGCCC
Found at i:27089975 original size:10 final size:9
Alignment explanation
Indices: 27089945--27089983 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
27089935 GGCCCAACAA
*
27089945 CCCATTAGG
1 CCCATTTGG
*
27089954 CCCATTTAG
1 CCCATTTGG
27089963 CCCATTTCGG
1 CCCATTT-GG
27089973 CCCATTTGG
1 CCCATTTGG
27089982 CC
1 CC
27089984 AATTCTCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.15, C:0.38, G:0.18, T:0.28
Consensus pattern (9 bp):
CCCATTTGG
Found at i:27090113 original size:8 final size:8
Alignment explanation
Indices: 27090090--27090136 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
27090080 CCCAACTTTC
27090090 GGCTTTTT
1 GGCTTTTT
*
27090098 GGCATTTT
1 GGCTTTTT
*
27090106 AGCTTTTT
1 GGCTTTTT
*
27090114 GGCTTTTC
1 GGCTTTTT
*
27090122 GGCATTTT
1 GGCTTTTT
27090130 GGCTTTT
1 GGCTTTT
27090137 GCTGATTCAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.06, C:0.15, G:0.23, T:0.55
Consensus pattern (8 bp):
GGCTTTTT
Found at i:27090117 original size:24 final size:24
Alignment explanation
Indices: 27090090--27090136 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
27090080 CCCAACTTTC
*
27090090 GGCTTTTTGGCATTTTAGCTTTTT
1 GGCTTTTCGGCATTTTAGCTTTTT
*
27090114 GGCTTTTCGGCATTTTGGCTTTT
1 GGCTTTTCGGCATTTTAGCTTTT
27090137 GCTGATTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.06, C:0.15, G:0.23, T:0.55
Consensus pattern (24 bp):
GGCTTTTCGGCATTTTAGCTTTTT
Found at i:27093705 original size:46 final size:46
Alignment explanation
Indices: 27093638--27093811 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 46
27093628 TGTAACCCGC
*
27093638 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
27093684 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
27093734 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
27093777 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
27093812 AATGCTCAAC
Statistics
Matches: 110, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.56
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:27093758 original size:93 final size:93
Alignment explanation
Indices: 27093646--27093816 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
27093636 GCCCATAAGT
* *
27093646 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
27093711 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
*
27093739 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27093804 CGAGTTCGAATGC
66 CGAGTTCGAATGC
27093817 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:27101332 original size:93 final size:93
Alignment explanation
Indices: 27101220--27101391 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
27101210 CGCCCATAAG
* *
27101220 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
27101285 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
27101313 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
27101378 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
27101392 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:27101388 original size:46 final size:46
Alignment explanation
Indices: 27101213--27101388 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
27101203 TGTAACCCGC
* * *
27101213 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
27101259 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
27101309 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
27101352 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
27101389 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:27103885 original size:28 final size:29
Alignment explanation
Indices: 27103802--27103897 Score: 149
Period size: 29 Copynumber: 3.3 Consensus size: 29
27103792 GAAAGCATGA
*
27103802 ATATGAATGTGATTTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
27103831 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
27103860 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
27103888 ATATGCATGT
1 ATATGAATGT
27103898 ATGTAGACTT
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
28 23 0.37
29 39 0.63
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Done.