Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 85040211
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85040211
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 160 characters in sequence are not A, C, G, or T
File 88 of 292
Found at i:27110128 original size:46 final size:46
Alignment explanation
Indices: 27110075--27110250 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
27110065 TATTTGGGCA
27110075 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
27110121 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
27110168 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
27110214 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
27110251 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 4 0.04
45 3 0.03
46 66 0.59
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:27110230 original size:93 final size:93
Alignment explanation
Indices: 27110071--27110242 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
27110061 GGGATATTTG
*
27110071 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
27110136 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
27110164 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
27110228 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
27110243 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:27115162 original size:47 final size:47
Alignment explanation
Indices: 27115093--27115182 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
27115083 AGCTTCCAAT
*
27115093 CCAACGAGCTTTCGATTTACTATAAAACAAGGAAATAAAACTACAAA
1 CCAACGAGCTTCCGATTTACTATAAAACAAGGAAATAAAACTACAAA
27115140 CCAACGAGCTTCCGATTTACTATAAAACAAGGAAATAAAACTA
1 CCAACGAGCTTCCGATTTACTATAAAACAAGGAAATAAAACTA
27115183 AGTAAGCATA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.48, C:0.20, G:0.11, T:0.21
Consensus pattern (47 bp):
CCAACGAGCTTCCGATTTACTATAAAACAAGGAAATAAAACTACAAA
Found at i:27118801 original size:21 final size:21
Alignment explanation
Indices: 27118777--27118818 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
27118767 TCCACTCATA
27118777 GTCAAACATTATTTCAAATTC
1 GTCAAACATTATTTCAAATTC
27118798 GTCAAACATTATTTCAAATTC
1 GTCAAACATTATTTCAAATTC
27118819 CCTTTCTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (21 bp):
GTCAAACATTATTTCAAATTC
Found at i:27120245 original size:43 final size:43
Alignment explanation
Indices: 27120184--27120291 Score: 125
Period size: 44 Copynumber: 2.5 Consensus size: 43
27120174 AATGCCAACA
*
27120184 TCCCAAACGTGGTCTTACATGT-AA-TCAAATATCGATGC-AACTG
1 TCCCAGACGTGGTCTTACATGTAAACTCAAAT-T-GATGCTAA-TG
*
27120227 TCCCAGACAG-GGTCTTACACGTAAATCTCAAATTGATGCTAATG
1 TCCCAGAC-GTGGTCTTACATGTAAA-CTCAAATTGATGCTAATG
27120271 TCCCAGACGTGGTCTTACATG
1 TCCCAGACGTGGTCTTACATG
27120292 AAATAACATA
Statistics
Matches: 56, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
43 19 0.34
44 28 0.50
45 3 0.05
46 6 0.11
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACATGTAAACTCAAATTGATGCTAATG
Found at i:27122500 original size:27 final size:28
Alignment explanation
Indices: 27122448--27122501 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
27122438 AATTTTGTAT
*
27122448 ATGTGAATTGTGTAATTGAATGGTATAC
1 ATGTGAATTCTGTAATTGAATGGTATAC
*
27122476 ATGTG-ATTCTGTTATTGACAT-GTATA
1 ATGTGAATTCTGTAATTGA-ATGGTATA
27122502 TAAAGCATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.43
Consensus pattern (28 bp):
ATGTGAATTCTGTAATTGAATGGTATAC
Found at i:27128382 original size:17 final size:18
Alignment explanation
Indices: 27128349--27128382 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
27128339 TGTGTTGAAA
27128349 TGTATATCATATTGTATG
1 TGTATATCATATTGTATG
*
27128367 TGTATAT-ATTTTGTAT
1 TGTATATCATATTGTAT
27128383 TAATCTCACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.26, C:0.03, G:0.15, T:0.56
Consensus pattern (18 bp):
TGTATATCATATTGTATG
Found at i:27131583 original size:20 final size:19
Alignment explanation
Indices: 27131484--27131584 Score: 60
Period size: 20 Copynumber: 5.1 Consensus size: 19
27131474 TGTACATGAT
27131484 TTGCACTTCGGTGCCCCTG
1 TTGCACTTCGGTGCCCCTG
* * * *
27131503 TATACACTTCGGTGTCTCTA
1 T-TGCACTTCGGTGCCCCTG
* * *
27131523 TTCGCACTACGGTACCCTTG
1 TT-GCACTTCGGTGCCCCTG
* * *
27131543 TTTGTACATT-TGTGCCTCTG
1 -TTGCAC-TTCGGTGCCCCTG
27131563 TCTGCACTTCGGTGCCCCTG
1 T-TGCACTTCGGTGCCCCTG
27131583 TT
1 TT
27131585 ATACATCTAT
Statistics
Matches: 56, Mismatches: 20, Indels: 12
0.64 0.23 0.14
Matches are distributed among these distances:
19 6 0.11
20 47 0.84
21 3 0.05
ACGTcount: A:0.11, C:0.31, G:0.21, T:0.38
Consensus pattern (19 bp):
TTGCACTTCGGTGCCCCTG
Found at i:27133602 original size:2 final size:2
Alignment explanation
Indices: 27133595--27133641 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
27133585 ATGATTTGTG
27133595 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27133637 AT AT A
1 AT AT A
27133642 AGTTAAAATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:27134330 original size:25 final size:25
Alignment explanation
Indices: 27134302--27134374 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
27134292 TATAATTGAG
27134302 TTATGTTGTAAACATATTAGATTCC
1 TTATGTTGTAAACATATTAGATTCC
* * * *
27134327 TTAT-CTGT---TAT-TTATA-TAC
1 TTATGTTGTAAACATATTAGATTCC
27134346 TTATGTTGTAAACATATTAGATTCC
1 TTATGTTGTAAACATATTAGATTCC
27134371 TTAT
1 TTAT
27134375 CTGTTATTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
19 6 0.18
20 7 0.21
21 2 0.06
23 2 0.06
24 7 0.21
25 10 0.29
ACGTcount: A:0.30, C:0.11, G:0.10, T:0.49
Consensus pattern (25 bp):
TTATGTTGTAAACATATTAGATTCC
Found at i:27134352 original size:44 final size:44
Alignment explanation
Indices: 27134302--27134392 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
27134292 TATAATTGAG
27134302 TTATGTTGTAAACATATTAGATTCCTTATCTGTTATTTATATAC
1 TTATGTTGTAAACATATTAGATTCCTTATCTGTTATTTATATAC
27134346 TTATGTTGTAAACATATTAGATTCCTTATCTGTTATTTATATAC
1 TTATGTTGTAAACATATTAGATTCCTTATCTGTTATTTATATAC
27134390 TTA
1 TTA
27134393 CTTACTAAGC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.51
Consensus pattern (44 bp):
TTATGTTGTAAACATATTAGATTCCTTATCTGTTATTTATATAC
Found at i:27148243 original size:12 final size:12
Alignment explanation
Indices: 27148210--27148247 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
27148200 GATTATTTGT
*
27148210 TATGATTGAATG
1 TATGATTAAATG
*
27148222 TATG-TGAAATG
1 TATGATTAAATG
27148233 TATGATTAAATG
1 TATGATTAAATG
27148245 TAT
1 TAT
27148248 TGTAAGTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
11 9 0.41
12 13 0.59
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (12 bp):
TATGATTAAATG
Found at i:27149357 original size:11 final size:11
Alignment explanation
Indices: 27149341--27149365 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
27149331 CCGTACCTAG
27149341 AAGAAAAAAAA
1 AAGAAAAAAAA
27149352 AAGAAAAAAAA
1 AAGAAAAAAAA
27149363 AAG
1 AAG
27149366 CTCTCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:27150810 original size:40 final size:40
Alignment explanation
Indices: 27150752--27150935 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
27150742 CGGATGATAA
*
27150752 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
27150792 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
27150832 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * * ***
27150872 TCGGGCTAAGTCCCGAAGGCATTTGTGTGAGCTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
27150912 CCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTT
27150936 AAGCGAGTAG
Statistics
Matches: 132, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:27152998 original size:80 final size:80
Alignment explanation
Indices: 27152914--27153067 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
27152904 TTATAGTGAT
* * * * *
27152914 TCGCACGATTGCCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAAAGGCCTTCGGGTCTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAATAACTAGCACAAAGGCCTTCGGGACTTAG
27152979 CCCGGATATATCAAC
66 CCCGGATATATCAAC
* * * **
27152994 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAATTACTAGCATAATTGCCTTCGGGACTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAATAACTAGCACAAAGGCCTTCGGGACTTAG
27153059 CCCGGATAT
66 CCCGGATAT
27153068 CATTCCAATG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (80 bp):
TCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAATAACTAGCACAAAGGCCTTCGGGACTTAG
CCCGGATATATCAAC
Found at i:27153024 original size:40 final size:39
Alignment explanation
Indices: 27152896--27153067 Score: 166
Period size: 40 Copynumber: 4.3 Consensus size: 39
27152886 CTTCGGGAGC
* * * *
27152896 TAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCT
1 TAGCCCGGATATA-TAACTCGCACGAATGCCTTCGGGTCT
* * * * *
27152936 TAACCCGGATTTAGTAACTTGCACAAAGGCCTTCGGGTCT
1 TAGCCCGGATATA-TAACTCGCACGAATGCCTTCGGGTCT
27152976 TAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCT
1 TAGCCCGGATATAT-AACTCGCACGAATGCCTTCGGGTCT
* * * * *
27153016 TAGCCCGGATGTAATTACTAGCA-TAATTGCCTTCGGGACT
1 TAGCCCGGATAT-ATAACTCGCACGAA-TGCCTTCGGGTCT
27153056 TAGCCCGGATAT
1 TAGCCCGGATAT
27153068 CATTCCAATG
Statistics
Matches: 109, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.03
40 104 0.95
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (39 bp):
TAGCCCGGATATATAACTCGCACGAATGCCTTCGGGTCT
Found at i:27160957 original size:40 final size:39
Alignment explanation
Indices: 27160913--27161057 Score: 173
Period size: 40 Copynumber: 3.6 Consensus size: 39
27160903 TTCGCACGAT
* * *
27160913 TGCCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATA-TAACTAGCACAAA
* *
27160953 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAT-AACTAGCACAAA
* * * *
27160993 TGCCTTCGGGTCTTAGCCCGGATGTAATTACTAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATAT-ATAACTAGCACAAA
*
27161033 TGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
27161058 CATTCCAATG
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 88 0.97
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (39 bp):
TGCCTTCGGGTCTTAGCCCGGATATATAACTAGCACAAA
Found at i:27160989 original size:80 final size:80
Alignment explanation
Indices: 27160904--27161057 Score: 227
Period size: 80 Copynumber: 1.9 Consensus size: 80
27160894 TTATAGTGAT
* * * * *
27160904 TCGCACGATTGCCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAAATGCCTTCGGGTCTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAATAACTAGCACAAATGCCTTCGGGACTTAG
27160969 CCCGGATATATCAAC
66 CCCGGATATATCAAC
* * * *
27160984 TCGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAATTACTAGCATAATTGCCTTCGGGACTTAG
1 TCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAATAACTAGCACAAATGCCTTCGGGACTTAG
27161049 CCCGGATAT
66 CCCGGATAT
27161058 CATTCCAATG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 65 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.29
Consensus pattern (80 bp):
TCGCACGAATGCCTTCGGGTCTTAACCCGGATGTAATAACTAGCACAAATGCCTTCGGGACTTAG
CCCGGATATATCAAC
Found at i:27169906 original size:40 final size:40
Alignment explanation
Indices: 27169847--27170052 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
27169837 CAATTGAATG
* * * *
27169847 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * *
27169887 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGA--
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
** * **
27169925 CCATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
27169965 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
27170005 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
27170045 ATATCCGG
1 ATATCCGG
27170053 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
37 2 0.01
38 28 0.20
40 106 0.77
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:27169983 original size:78 final size:80
Alignment explanation
Indices: 27169849--27170052 Score: 243
Period size: 78 Copynumber: 2.6 Consensus size: 80
27169839 ATTGAATGAT
* * ** * * *
27169849 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
27169913 TTGTGCTAGT-G-ACC
65 TTGTGCAAGTCGTACC
* * *
27169927 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
* *
27169992 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGTACC
* *
27170007 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
27170053 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
77 2 0.02
78 60 0.56
79 1 0.01
80 44 0.41
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGTACC
Found at i:27177256 original size:40 final size:40
Alignment explanation
Indices: 27177196--27177379 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
27177186 TATTCGAATG
* *
27177196 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCCAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
27177236 ATATCCGGACTAAGATCCGAAGGCATTTTTGCGAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* * *
27177276 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
27177316 ATATCCGGGCTATG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* *
27177356 ATATCCGGGCTAAGACCCAAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
27177380 CTTGTGCGAG
Statistics
Matches: 122, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 121 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:27177336 original size:80 final size:80
Alignment explanation
Indices: 27177196--27177379 Score: 244
Period size: 80 Copynumber: 2.3 Consensus size: 80
27177186 TATTCGAATG
* * *
27177196 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCCAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCCAGCGACTATATCCGGACTAAGATCCGAAGGCA
* * *
27177261 TTTTTGCGAGTTACT
66 TTTATGCGAGTGACC
* * * *
27177276 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTATG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCCAGCGACTATATCCGGACTAAGAT-CCGAAGGC
*
27177340 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
*
27177356 ATATCCGGGCTAAGACCCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
27177380 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
79 1 0.01
80 90 0.99
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCCAGCGACTATATCCGGACTAAGATCCGAAGGCA
TTTATGCGAGTGACC
Found at i:27182499 original size:68 final size:67
Alignment explanation
Indices: 27182427--27182598 Score: 181
Period size: 67 Copynumber: 2.6 Consensus size: 67
27182417 GATCATGTGT
* * *
27182427 ACAAGAGAGCTACGAGATACTATGTGGTAGCTAGGTCACATGTGT-GATAC-GG-GATGTATACC
1 ACAAGAGAGCTACGAGATA--A-AT-GTAGCTAGGTCACATGTGTGGATACAGGTGAAGGATACC
27182489 ATGTAG
62 ATGTAG
* * * * * *
27182495 ACAAGAGAGCTACGGGATAAATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGATGCTATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGTGTGGATACAGGTGAAGGATACCATGT
27182560 AG
66 AG
* *
27182562 ACAAGAGAGCTACGAGATAAA-GTGGCTAGGTCCCATG
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATG
27182599 GGTTGTACTA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 18 0.20
65 4 0.04
66 17 0.19
67 32 0.36
68 18 0.20
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGTGTGGATACAGGTGAAGGATACCATGT
AG
Found at i:27186709 original size:18 final size:18
Alignment explanation
Indices: 27186688--27186726 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
27186678 TGTTTATTTT
27186688 TTTAACACAT-TTTAATTA
1 TTTAACA-ATATTTAATTA
*
27186706 TTTAATAATATTTAATTA
1 TTTAACAATATTTAATTA
27186724 TTT
1 TTT
27186727 TTCGATAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAACAATATTTAATTA
Found at i:27188579 original size:6 final size:6
Alignment explanation
Indices: 27188549--27188661 Score: 63
Period size: 6 Copynumber: 18.3 Consensus size: 6
27188539 AAGAAACATT
* * * *
27188549 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
27188598 ATCAGA ATCAGA ATCAG- TTGACAGA ATCAGA ATCAGT ATCAGGTA A-CAAA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
27188648 ATCAAA ATCAGA AT
1 ATCAGA ATCAGA AT
27188662 GTGAATGCAA
Statistics
Matches: 83, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
5 5 0.06
6 65 0.78
7 10 0.12
8 3 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:27188604 original size:25 final size:25
Alignment explanation
Indices: 27188570--27188661 Score: 130
Period size: 25 Copynumber: 3.7 Consensus size: 25
27188560 AATCAAAATG
*
27188570 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
27188595 AGAATCAGAATCAGAATCAGTTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
27188620 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
27188645 AAAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
27188662 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:27193998 original size:6 final size:6
Alignment explanation
Indices: 27193987--27194036 Score: 84
Period size: 6 Copynumber: 8.5 Consensus size: 6
27193977 TCCTCCTATC
*
27193987 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTTTCA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
27194034 TTT
1 TTT
27194037 CAATTTTATT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
5 5 0.12
6 37 0.88
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:27194014 original size:17 final size:17
Alignment explanation
Indices: 27193988--27194046 Score: 82
Period size: 17 Copynumber: 3.4 Consensus size: 17
27193978 CCTCCTATCT
27193988 TTTTATTTTTATTTTTA
1 TTTTATTTTTATTTTTA
27194005 TTTTTATTTTTATTTTTA
1 -TTTTATTTTTATTTTTA
* **
27194023 TTTTATTTTCATTTCAA
1 TTTTATTTTTATTTTTA
27194040 TTTTATT
1 TTTTATT
27194047 ATTTTCTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
17 21 0.55
18 17 0.45
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTATTTTTATTTTTA
Found at i:27196504 original size:14 final size:13
Alignment explanation
Indices: 27196484--27196515 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
27196474 AATATTTAAC
27196484 TTGTTCTTAATTA
1 TTGTTCTTAATTA
27196497 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
27196511 TTGTT
1 TTGTT
27196516 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:27201024 original size:6 final size:6
Alignment explanation
Indices: 27201013--27201063 Score: 93
Period size: 6 Copynumber: 8.5 Consensus size: 6
27201003 TCCTCCTATC
*
27201013 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTCA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
27201061 TTT
1 TTT
27201064 CAATTTTATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:27208081 original size:6 final size:6
Alignment explanation
Indices: 27208070--27208108 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
27208060 TCCTCCTATC
*
27208070 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
27208109 CAATTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:27208114 original size:18 final size:18
Alignment explanation
Indices: 27208075--27208115 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
27208065 CTATCTTTTT
* **
27208075 ATTTTTATTTTTATTTTT
1 ATTTTTATTTTCATTTCA
27208093 ATTTTTATTTTCATTTCA
1 ATTTTTATTTTCATTTCA
27208111 ATTTT
1 ATTTT
27208116 ATTATTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (18 bp):
ATTTTTATTTTCATTTCA
Found at i:27210568 original size:14 final size:13
Alignment explanation
Indices: 27210548--27210579 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
27210538 AATATTTAAC
27210548 TTGTTCTTAATTA
1 TTGTTCTTAATTA
27210561 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
27210575 TTGTT
1 TTGTT
27210580 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:27220616 original size:30 final size:30
Alignment explanation
Indices: 27220570--27220877 Score: 209
Period size: 30 Copynumber: 10.3 Consensus size: 30
27220560 TTGTTACCAG
* * *
27220570 CCCTTTTCATAGTTTGATAGCTGAAGCTAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * *
27220600 CCCTTTCCATATTTTGATAGCCGAAGACAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * * *
27220630 CCCATTTCATTA-TTGATGGTC-ATCA-CCAT
1 CCCTTTTCATAATTTGATAGCCGA--AGCCAT
* *
27220659 CCCTTTTCATAATTTGATAGTCGAAGCTAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* **
27220689 CCCTTTTCATAAATCAATAGCCGAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
*
27220719 CCCTTTTCATAATTTGATAGCCAAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * ** *
27220749 CCCTTTTCATAATTCGATGGTTGTCA-CCAT
1 CCCTTTTCATAATTTGATAGCCG-AAGCCAT
* *
27220779 CCCTTTTCAT--TGTTGATAGTCGTCA-CCAT
1 CCCTTTTCATAAT-TTGATAGCCG-AAGCCAT
** *
27220808 CCCTTTTCATAATTCAATAGCTGAAGCTC-T
1 CCCTTTTCATAATTTGATAGCCGAAGC-CAT
* * * * **
27220838 CTCTTTCCATATTTTGATAGCCAAAGTAAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
*
27220868 CCATTTTCAT
1 CCCTTTTCAT
27220878 TGGCCGATGA
Statistics
Matches: 215, Mismatches: 51, Indels: 24
0.74 0.18 0.08
Matches are distributed among these distances:
28 2 0.01
29 46 0.21
30 163 0.76
31 4 0.02
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (30 bp):
CCCTTTTCATAATTTGATAGCCGAAGCCAT
Found at i:27220709 original size:89 final size:89
Alignment explanation
Indices: 27220565--27220762 Score: 238
Period size: 89 Copynumber: 2.2 Consensus size: 89
27220555 GATGGTTGTT
* * ** **
27220565 ACCAGCCCTTTTCATAGTTTGATAGCTGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGACAT
1 ACCATCCCTTTTCATAATTTGATAGCTGAAGCTATCCCTTTCCATAAATCAATAGCCGAAGACAT
* * * *
27220630 CCCATTTCATTA-TTGATGGTCATC
66 CCCATTTCATAATTTGATAGCCA-A
* *
27220654 ACCATCCCTTTTCATAATTTGATAG-TCGAAGCTATCCCTTTTCATAAATCAATAGCCGAAGCCA
1 ACCATCCCTTTTCATAATTTGATAGCT-GAAGCTATCCCTTTCCATAAATCAATAGCCGAAGACA
*
27220718 TCCCTTTTCATAATTTGATAGCCAA
65 TCCCATTTCATAATTTGATAGCCAA
27220743 AGCCATCCCTTTTCATAATT
1 A-CCATCCCTTTTCATAATT
27220763 CGATGGTTGT
Statistics
Matches: 93, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
88 1 0.01
89 66 0.71
90 26 0.28
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (89 bp):
ACCATCCCTTTTCATAATTTGATAGCTGAAGCTATCCCTTTCCATAAATCAATAGCCGAAGACAT
CCCATTTCATAATTTGATAGCCAA
Found at i:27220737 original size:60 final size:60
Alignment explanation
Indices: 27220570--27220857 Score: 232
Period size: 60 Copynumber: 4.8 Consensus size: 60
27220560 TTGTTACCAG
* ** * * * * *
27220570 CCCTTTTCATAGTTTGATAGCTGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGACAT
1 CCCTTTTCATAATTCAATAGCTGAAGCCATCCCTTTTCATAATTTGATAGTCGAAGCCAT
* * * * * *
27220630 CCCATTTCATTATT-GATGGTCAT-CA-CCATCCCTTTTCATAATTTGATAGTCGAAGCTAT
1 CCCTTTTCATAATTCAATAG-C-TGAAGCCATCCCTTTTCATAATTTGATAGTCGAAGCCAT
* * * *
27220689 CCCTTTTCATAAATCAATAGCCGAAGCCATCCCTTTTCATAATTTGATAGCCAAAGCCAT
1 CCCTTTTCATAATTCAATAGCTGAAGCCATCCCTTTTCATAATTTGATAGTCGAAGCCAT
* * * * *
27220749 CCCTTTTCATAATTCGATGGTTGTCA-CCATCCCTTTTCAT--TGTTGATAGTCGTCA-CCAT
1 CCCTTTTCATAATTCAATAGCTG-AAGCCATCCCTTTTCATAAT-TTGATAGTCG-AAGCCAT
* * *
27220808 CCCTTTTCATAATTCAATAGCTGAAGCTC-TCTCTTTCCATATTTTGATAG
1 CCCTTTTCATAATTCAATAGCTGAAGC-CATCCCTTTTCATAATTTGATAG
27220858 CCAAAGTAAT
Statistics
Matches: 180, Mismatches: 36, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
58 2 0.01
59 87 0.48
60 88 0.49
61 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (60 bp):
CCCTTTTCATAATTCAATAGCTGAAGCCATCCCTTTTCATAATTTGATAGTCGAAGCCAT
Found at i:27220783 original size:90 final size:89
Alignment explanation
Indices: 27220565--27220788 Score: 211
Period size: 89 Copynumber: 2.5 Consensus size: 89
27220555 GATGGTTGTT
* * * * * ** **
27220565 ACCAGCCCTTTTCATAGTTTGATAG-CTGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGACA
1 ACCATCCCTTTTCATAATTCGATAGTC-GAAGCCATCCCTTTTCATAAATCAATAGCCGAAGACA
* * * *
27220629 TCCCATTTCATTATTGATGGTCATC
65 TCCCATTTCATAATTGATAGCCATA
* * *
27220654 ACCATCCCTTTTCATAATTTGATAGTCGAAGCTATCCCTTTTCATAAATCAATAGCCGAAGCCAT
1 ACCATCCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTTCATAAATCAATAGCCGAAGACAT
*
27220719 CCCTTTTCATAATTTGATAGCCA-A
66 CCCATTTCATAA-TTGATAGCCATA
* * *
27220743 AGCCATCCCTTTTCATAATTCGATGGTTGTCA-CCATCCCTTTTCAT
1 A-CCATCCCTTTTCATAATTCGATAGTCG-AAGCCATCCCTTTTCAT
27220789 TGTTGATAGT
Statistics
Matches: 113, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
89 66 0.58
90 46 0.41
91 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (89 bp):
ACCATCCCTTTTCATAATTCGATAGTCGAAGCCATCCCTTTTCATAAATCAATAGCCGAAGACAT
CCCATTTCATAATTGATAGCCATA
Found at i:27220795 original size:119 final size:118
Alignment explanation
Indices: 27220586--27220877 Score: 367
Period size: 119 Copynumber: 2.5 Consensus size: 118
27220576 TCATAGTTTG
* * * *
27220586 ATAGCTGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGACATCCCATTTCATTATTGATGGTC
1 ATAGCTGAAGCCATCCCTTTCCATATTTTGATAGCCAAAGACATCCCTTTTCATAATTGATGGTC
*
27220651 ATCACCATCCCTTTTCATAATTTGATAGTCG-AAGCTATCCCTTTTCATAAATCA
66 ATCACCATCCCTTTTCAT-ATTTGATAGTCGTAA-CCATCCCTTTTCATAAATCA
* * * *
27220705 ATAGCCGAAGCCATCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTTCATAATTCGATGGT
1 ATAGCTGAAGCCATCCCTTTCCATATTTTGATAGCCAAAGACATCCCTTTTCATAATT-GATGGT
** * *
27220770 TGTCACCATCCCTTTTCAT-TGTTGATAGTCGTCACCATCCCTTTTCATAATTCA
65 CATCACCATCCCTTTTCATAT-TTGATAGTCGTAACCATCCCTTTTCATAAATCA
* *
27220824 ATAGCTGAAGCTC-TCTCTTTCCATATTTTGATAGCCAAAGTA-ATCCATTTTCAT
1 ATAGCTGAAGC-CATCCCTTTCCATATTTTGATAGCCAAAG-ACATCCCTTTTCAT
27220878 TGGCCGATGA
Statistics
Matches: 149, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
118 1 0.01
119 123 0.83
120 25 0.17
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.37
Consensus pattern (118 bp):
ATAGCTGAAGCCATCCCTTTCCATATTTTGATAGCCAAAGACATCCCTTTTCATAATTGATGGTC
ATCACCATCCCTTTTCATATTTGATAGTCGTAACCATCCCTTTTCATAAATCA
Found at i:27221675 original size:4 final size:4
Alignment explanation
Indices: 27221649--27221691 Score: 50
Period size: 4 Copynumber: 10.0 Consensus size: 4
27221639 CACAATTTGT
*
27221649 TTTA CTTTA TTTTA TTTA GTTTA TTTA TTTA TTTA CTTA TTTA
1 TTTA -TTTA -TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA
27221692 ACCTTTTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
4 22 0.65
5 12 0.35
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (4 bp):
TTTA
Found at i:27227520 original size:40 final size:40
Alignment explanation
Indices: 27227396--27227560 Score: 183
Period size: 40 Copynumber: 4.1 Consensus size: 40
27227386 CGGAGTTTAA
** ** *
27227396 CCGGATATAGCT-ACTCGTTCAAATATCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27227436 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27227476 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
27227516 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
27227556 CCGGA
1 CCGGA
27227561 CATCATTTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.04
40 91 0.86
41 11 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:27235762 original size:40 final size:40
Alignment explanation
Indices: 27235598--27235762 Score: 201
Period size: 40 Copynumber: 4.1 Consensus size: 40
27235588 CGGAGTTTAA
** *
27235598 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27235638 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
27235678 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
27235718 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
27235758 CCGGA
1 CCGGA
27235763 CATCATTCGA
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
39 4 0.04
40 93 0.86
41 11 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:27249505 original size:22 final size:23
Alignment explanation
Indices: 27249473--27249515 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
27249463 TATGTATGAA
*
27249473 TTACAACATGTTTATATTAAATT
1 TTACAACATGTATATATTAAATT
*
27249496 TTACAA-ATGTATATTTTAAA
1 TTACAACATGTATATATTAAA
27249516 GTTACATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.47
Consensus pattern (23 bp):
TTACAACATGTATATATTAAATT
Found at i:27256439 original size:43 final size:41
Alignment explanation
Indices: 27256363--27256474 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 41
27256353 TGAGTTTACT
* * *
27256363 TGTAAGACCATATTAGGGATATGGCATCTATATGAGACTT-CG
1 TGTAAGACCATACT-GGGATATGGCATCGATATGAGA-TTGCA
*
27256405 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATTGCA
1 TGTAAGACCATA-CTGGGATA-TGGCATCGATATGAGATTGCA
*
27256448 TGTAAGACCATATCTGGGATATCGCAT
1 TGTAAGACCATA-CTGGGATATGGCAT
27256475 TGGTACAATA
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 24 0.40
43 36 0.60
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATACTGGGATATGGCATCGATATGAGATTGCA
Found at i:27261009 original size:30 final size:31
Alignment explanation
Indices: 27260951--27261013 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
27260941 CTTAACAAGT
27260951 AAATGCCTCTAAAATAATAAAAAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAAATTAAC
* *
27260982 AAATGCCTTTAAAATAAT-AACAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAAATTAAC
27261012 AA
1 AA
27261014 GAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 13 0.43
31 17 0.57
ACGTcount: A:0.60, C:0.13, G:0.03, T:0.24
Consensus pattern (31 bp):
AAATGCCTCTAAAATAATAAAAAAAATTAAC
Found at i:27261862 original size:15 final size:16
Alignment explanation
Indices: 27261842--27261879 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
27261832 CTCTACATTA
27261842 AGAACAACTT-TGTTG
1 AGAACAACTTGTGTTG
*
27261857 AGAACAACTTGTGTTT
1 AGAACAACTTGTGTTG
27261873 AGAACAA
1 AGAACAA
27261880 GTCAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.29
Consensus pattern (16 bp):
AGAACAACTTGTGTTG
Found at i:27261930 original size:17 final size:17
Alignment explanation
Indices: 27261888--27261931 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
27261878 AAGTCAAAAT
* *
27261888 AATTATTATTCAAGAAC
1 AATTATCATCCAAGAAC
* *
27261905 AACTCTCATCCAAGAAC
1 AATTATCATCCAAGAAC
27261922 AATTATCATC
1 AATTATCATC
27261932 TTATGTTTCA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.43, C:0.23, G:0.05, T:0.30
Consensus pattern (17 bp):
AATTATCATCCAAGAAC
Found at i:27264107 original size:1 final size:1
Alignment explanation
Indices: 27264103--27264131 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
27264093 TCCCTTCCTC
27264103 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
27264132 CAGTTTTCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:27270775 original size:20 final size:20
Alignment explanation
Indices: 27270750--27270790 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
27270740 AAGGTGTAAG
27270750 AGTGTTACCCCATTGGACTA
1 AGTGTTACCCCATTGGACTA
27270770 AGTGTTACCCCATTGGACTA
1 AGTGTTACCCCATTGGACTA
27270790 A
1 A
27270791 CTTCTCAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (20 bp):
AGTGTTACCCCATTGGACTA
Found at i:27274658 original size:299 final size:304
Alignment explanation
Indices: 27274185--27274948 Score: 749
Period size: 299 Copynumber: 2.5 Consensus size: 304
27274175 AATCCAGTGT
* * * * ** * ** * **
27274185 ATTAATGTTGGTATGATCACACCCATCAATTTTTACGCAATTTA-TATACATAAAGGTTTCCTTT
1 ATTAATGCTAGTATGATCACACCCATCAATTATTGCGCAACCTACT-TATATAAAGACTACCCCT
* * * * *
27274249 TATCACACTTGCACCTCGAATTTGAATA--AAATATAATCAAATAATGTTTAAACAGATTTCTTT
65 TATCGCACTTGCGCCTCGAATTTGAA-AGCAAATATAACCAAATAATGTTTAAAAAGATTTATTT
* * * * * *
27274312 CACAAAACACACACAAAAAAAAATGAATAACGCAAATAGTGTTTAAAAAGGTTCATTTCGCAAAA
129 CGCAAAACGCA-AAAAAAAAAAAAGAATAACACAAATAATGTTTAAAAAGGTTCATTTCGCAAAA
* * * * ** ** * *
27274377 TGCAAATAAAAAGATTTAAATAA-TGTTGA-CTTCCCAA-GA-AGGAGGTCACCCATCCTAGTAC
193 TGAAAATAAAAA-AATAAAATAAGAGGAGAGCAACACAAGGATAAGAGGTCACCCATCCTAGTAC
* *
27274438 TACACTCACCAAAGCACGCTTAACTACAG-ATTAATAGGATTCGATGC
257 TACACTCACCAAAACACGCTTAACTACAGTATTAATAGGATCCGATGC
* * * *
27274485 ATTAATGCTAGTATGATCGCACCCATC-ATTATTGTGCAATCTACTTACT-TAAAGACTACTCC-
1 ATTAATGCTAGTATGATCACACCCATCAATTATTGCGCAACCTACTTA-TATAAAGACTACCCCT
* * * *
27274547 TATCGCACTTGCGCCTCGAATTTGAAAGCAATTACAACCAAATAATGTTTAAAAAAACTTATTTC
65 TATCGCACTTGCGCCTCGAATTTGAAAGCAAATATAACCAAATAATGTTTAAAAAGATTTATTTC
* * *
27274612 GCAAAACGCAAATAAAAAAAAAAGAATTACATAAATAATGTTTAAAAAGGTTTATTTCGCAAAAT
130 GCAAAACGCAAA-AAAAAAAAAAGAATAACACAAATAATGTTTAAAAAGGTTCATTTCGCAAAAT
27274677 GAAAATAAAAAAATAAAATAAGAGGAGAGCAACACAAGGACTTCTTAAGAGGTCACCCATCCTAG
194 GAAAATAAAAAAATAAAATAAGAGGAGAGCAACACAAGGA-----TAAGAGGTCACCCATCCTAG
** ** * * * * * * *
27274742 TACTACTTTTGCCAAAACACGTTTGACTAGAGTTTTGATGGGATCCGGTGC
254 TACTACACTCACCAAAACACGCTTAACTACAGTATTAATAGGATCCGATGC
* * * * *
27274793 ATTAGTGTTGGTATGATCACACCCATCAATTCTTGCGCAACCTATTTATATAAAGACTACCCCTT
1 ATTAATGCTAGTATGATCACACCCATCAATTATTGCGCAACCTACTTATATAAAGACTACCCCTT
* * * *
27274858 ATCGCACTTGCGCCTCAAATTTGAAAGCAACTATAACCAAAAAAATGTTTAAAATGATTTATTTC
66 ATCGCACTTGCGCCTCGAATTTGAAAGCAAATATAACC-AAATAATGTTTAAAAAGATTTATTTC
27274923 GCAAAACGCAAAAAAAAAAAAAGAAT
130 GCAAAACGCAAAAAAAAAAAAAGAAT
27274949 GATTGCCGAT
Statistics
Matches: 374, Mismatches: 71, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
297 1 0.00
298 33 0.09
299 117 0.31
300 30 0.08
301 2 0.01
307 42 0.11
308 37 0.10
309 28 0.07
310 50 0.13
311 34 0.09
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (304 bp):
ATTAATGCTAGTATGATCACACCCATCAATTATTGCGCAACCTACTTATATAAAGACTACCCCTT
ATCGCACTTGCGCCTCGAATTTGAAAGCAAATATAACCAAATAATGTTTAAAAAGATTTATTTCG
CAAAACGCAAAAAAAAAAAAAGAATAACACAAATAATGTTTAAAAAGGTTCATTTCGCAAAATGA
AAATAAAAAAATAAAATAAGAGGAGAGCAACACAAGGATAAGAGGTCACCCATCCTAGTACTACA
CTCACCAAAACACGCTTAACTACAGTATTAATAGGATCCGATGC
Found at i:27275744 original size:28 final size:28
Alignment explanation
Indices: 27275680--27275736 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
27275670 TTTCTTTCAC
* *
27275680 AAAATGCAAATAAATAAATAAAGTTTAG
1 AAAATGCAAATAAATAAATAAAATTAAG
27275708 AAAATGCAAATAAATAAATAAAATGTAAG
1 AAAATGCAAATAAATAAATAAAAT-TAAG
27275737 GCATGCAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 23 0.88
29 3 0.12
ACGTcount: A:0.63, C:0.04, G:0.11, T:0.23
Consensus pattern (28 bp):
AAAATGCAAATAAATAAATAAAATTAAG
Found at i:27277647 original size:27 final size:27
Alignment explanation
Indices: 27277617--27277770 Score: 155
Period size: 27 Copynumber: 5.5 Consensus size: 27
27277607 ATAGTGAATC
27277617 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
27277644 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
*
27277672 CGCACACTTAGTGCTATAAAATTAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * *
27277699 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* **
27277728 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
27277757 TGCACACTTAGTGC
1 CGCACACTTAGTGC
27277771 CATTCTCGTC
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 40 0.38
28 26 0.25
29 40 0.38
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:27277664 original size:29 final size:28
Alignment explanation
Indices: 27277617--27277770 Score: 136
Period size: 29 Copynumber: 5.5 Consensus size: 28
27277607 ATAGTGAATC
27277617 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
27277644 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
*
27277672 CGCACACTTAGTGC-TATAAAATTAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
27277699 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
27277728 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
27277757 TGCACACTTAGTGC
1 CGCACACTTAGTGC
27277771 CATTCTCGTC
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
27 36 0.34
28 27 0.25
29 42 0.40
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:27277688 original size:55 final size:55
Alignment explanation
Indices: 27277617--27277720 Score: 199
Period size: 55 Copynumber: 1.9 Consensus size: 55
27277607 ATAGTGAATC
27277617 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
*
27277672 CGCACACTTAGTGCTATAAAATTAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
27277721 TTGAGCTCGC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:27278416 original size:2 final size:2
Alignment explanation
Indices: 27278404--27278439 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
27278394 TGATGGTCGA
*
27278404 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27278440 CAACTATGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27279995 original size:286 final size:286
Alignment explanation
Indices: 27279281--27280386 Score: 1019
Period size: 300 Copynumber: 3.8 Consensus size: 286
27279271 CTGTCACAGT
* * * * * * *
27279281 TGCAACATGAGGACTTCCCAGGAGGTCACTCGTCCTAGTACTACTCTCACCCAAGCACGCTTAAT
1 TGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTTCTACTCTCACCCAAGCATGCTTAAC
* * * * * **
27279346 TGCGGAGTTCTGATGAGATTCGTTGCATTAGTGCTGGTATGATTTCACCCATCAAATCTTGCATA
66 TACGGAGTTCTGATGAGATTCGATGCATTAGTGCTGGTATGATCTCACCCGTCAATTCTTGCGCA
* *
27279411 AT-TATTTTACATAAAAGCTACCCCTTA-CTGCACTTGCACCTCGAATTTGAATGCAAATTT---
131 ATCTA-TTTACATAAAGGCTACCCCTTATC-GCACTTGCGCCTCGAATTTGAATGCAAATTTGAC
* * * *
27279471 ---ATAACGTTTCAAAAGATTTATTTTGCAAAACGCAAATAAATAAAGAATTAAATAATGTTTAG
194 CAAATAACATTTCAAAAGATTTATTTCGCAAAACACAAATAAAT--A-AA-TAAATAATGTTTTG
*
27279533 AAAATGCAAAAA-AAGAAAA-GAAA-GTAAGGGG
255 AAAA--CAAAAATAAGAAAATAAAATGTAAGGGG
* * * * * *
27279564 TGCAACATGATGACTTCCTAGGAGGTCACCTATACTAGTTCTACTCTCACCCAAGCATGCCTAAT
1 TGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTTCTACTCTCACCCAAGCATGCTTAAC
* * * * *
27279629 TGC-CAGTTCTGAT-ACGA-TCTGGTGCATTAGTGCTGGTATGATCGCACCCGTTAATTCTTGCG
66 TACGGAGTTCTGATGA-GATTC-GATGCATTAGTGCTGGTATGATCTCACCCGTCAATTCTTGCG
* *
27279691 CAATCTATTTACATAAAGGCTACCCCTTATTGCACTTGCGCCTTGAATTTGAATGCAAATTTGAC
129 CAATCTATTTACATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGAC
* * * * *
27279756 CAAATAACATTTGAAAAGATTTCTTTCGCAAAACGCAAATAAATAAACAAATAAAGTTTTGAAAA
194 CAAATAACATTTCAAAAGATTTATTTCGCAAAACACAAATAAATAAATAAATAATGTTTTGAAAA
**
27279821 CAAAAATAA-AACAATAAAATGTAAGATG
259 CAAAAATAAGAA-AATAAAATGTAAGGGG
* * ** *
27279849 TGCAACACGAGGACTTTCTAGGAGGTCACCCATCGTAGTTCTACTCTTGCCCAACCATGCTTAAC
1 TGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTTCTACTCTCACCCAAGCATGCTTAAC
* * * * *
27279914 TACGGAGTTCTGAT-AGGATACGATGCGTTAGTTCTGGTATGATCACACCCGTCAGTTCTTGCGC
66 TACGGAGTTCTGATGA-GATTCGATGCATTAGTGCTGGTATGATCTCACCCGTCAATTCTTGCGC
** * * * *
27279978 AATCTATTTGTATAAAGGC-AGCCCCTTATCGCACTTACGCCTCGAATTTTAATCCAAATTTGAA
130 AATCTATTTACATAAAGGCTA-CCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGAC
* * *
27280042 AAAATAACATTTCAAAAGATTTATTTAAG-AAAACACAAATAAATATTTAAATAAATGATGTTTT
194 CAAATAACATTTCAAAAGATTTATTT-CGCAAAACACAAAT-AA-A--TAAATAAATAATGTTTT
* *
27280106 GAAAATGCAACTAAAAAATTTATATAAAATAAAATGTGAGGGG
254 G--AA---AAC--AAAAA--TA-AGAAAATAAAATGTAAGGGG
* * * * * * *
27280149 TGCAATACGAGGACATCATAGGAGGTCACCCATCCTAGTCCTACTTTCGCCCAAGCGTGCTTAAC
1 TGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTTCTACTCTCACCCAAGCATGCTTAAC
* * * * * **
27280214 TA-TGAGGTTCTGATGAAATTCAACGCGTTAGTGCTCATATGATCTCACCCGTCAATTCTTGCGC
66 TACGGA-GTTCTGATGAGATTCGATGCATTAGTGCTGGTATGATCTCACCCGTCAATTCTTGCGC
* * * * * * *
27280278 AATCTATTTACAGAAAGCCT-CCTCCTCATCACACTTGTGTCTCGAATTTTAATGCAAATTTGAC
130 AATCTATTTACATAAAGGCTACC-CCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGAC
** * *
27280342 CAAATAATGTTTCAAAAGATTTATTTCACAAAACACAAGTAAATA
194 CAAATAACATTTCAAAAGATTTATTTCGCAAAACACAAATAAATA
27280387 TTTATATAAA
Statistics
Matches: 676, Mismatches: 109, Indels: 63
0.80 0.13 0.07
Matches are distributed among these distances:
281 3 0.00
282 107 0.16
283 65 0.10
284 18 0.03
285 65 0.10
286 137 0.20
287 4 0.01
288 38 0.06
290 15 0.02
292 2 0.00
295 3 0.00
296 2 0.00
297 5 0.01
298 1 0.00
299 8 0.01
300 200 0.30
301 3 0.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (286 bp):
TGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTTCTACTCTCACCCAAGCATGCTTAAC
TACGGAGTTCTGATGAGATTCGATGCATTAGTGCTGGTATGATCTCACCCGTCAATTCTTGCGCA
ATCTATTTACATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGACCA
AATAACATTTCAAAAGATTTATTTCGCAAAACACAAATAAATAAATAAATAATGTTTTGAAAACA
AAAATAAGAAAATAAAATGTAAGGGG
Found at i:27282290 original size:22 final size:23
Alignment explanation
Indices: 27282264--27282306 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
27282254 GAAAATAACC
*
27282264 AAAATTCATCAAAATT-AATTAT
1 AAAATTAATCAAAATTCAATTAT
*
27282286 AAAATTAATTAAAATTCAATT
1 AAAATTAATCAAAATTCAATT
27282307 TCATATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (23 bp):
AAAATTAATCAAAATTCAATTAT
Found at i:27289826 original size:301 final size:299
Alignment explanation
Indices: 27289221--27290429 Score: 1296
Period size: 301 Copynumber: 4.0 Consensus size: 299
27289211 AATAACATTT
* * *
27289221 CTACCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACCAAAT-AAAGTTTCAAATG
1 CTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCAACCAAATGACA-TTTCAAATG
** * *
27289285 ATTTATTTCGCAAAACGTAAATAACTAATTAAATAAATGATGTTTAGAAAATGCAAATAAAAATA
65 ATTTATTTCGCAAAACAAAAATAACTAATTAAATAAATGATGTTTAAAAAACGCAAATAAAAA-A
* * * * * * * * *
27289350 ATTATATAAAAT-CAATGAGAGGGGTGCAACACAAAGAATTTCGAAAAGGTCATCCATCCTAGTA
129 ATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGAA-GTCACCCATCCTAGTA
* * **
27289414 CTACTCTCTCCCAAGCACGCTTAACAATGAAGTTCTGATGGAATCCGGTGCATTAGTTTTGGTAT
193 CTACTCTCGCCCAAGCACGCTTAACAATGAAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTAT
* * *
27289479 TATCGGA-CTCGTCAATTCTTGTGCAATCTATTTACATAAAGG
258 AATCGCACCT-GTCAATTCTTGCGCAATCTATTTACATAAAGG
* * * ** * *
27289521 CTACCCCTTATCACACTTGCGCCTCAAATTTGAATACAAATTTGACCAAATGGCATTTCAATTGA
1 CTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCAACCAAATGACATTTCAAATGA
* * * * *
27289586 TTTATTTTGCAAAACAAAAATAACTATTTAAATACATGATGTGTAAAAAACGCAATTAATAAAAA
66 TTTATTTCGCAAAACAAAAATAACTAATTAAATAAATGATGTTTAAAAAACGCAAATAA-AAAAA
*
27289651 TTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGCAAGACACCCATCCTAGTAC
130 TTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG-AAGTCACCCATCCTAGTAC
* * * * * *
27289716 TGCTCTCACCCAAGCACGTTTAGCAATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATA
194 TACTCTCGCCCAAGCACGCTTAACAATGAAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATA
* ** *
27289781 ATCGCACCTGTTAATTCTTGCATAATCTGTTTACATAAAGG
259 ATCGCACCTGTCAATTCTTGCGCAATCTATTTACATAAAGG
* * *
27289822 CTACCGCTTATCGCACTTGCACCTCGAATTCT-AATG-AAATTTCAACCAAA-GAACGTTTCAAA
1 CTACCCCTTATCGCACTTGCGCCTCGAATT-TGAATGCAAA-TTCAACCAAATG-ACATTTCAAA
* *
27289884 TGATTTATTTCGCAATACAAAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAA
63 TGATTTATTTCGCAAAACAAAAATAACTAATTAAATAAATGATGTTTAAAAAACGCAAAT-AAAA
* ** *
27289949 AAATTATATAAAATAAAATGGGAGGGGTCCAACACGAGGACTTTCCGGGAGGTCACCCATCCTAG
127 AAATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGAC-TTCCCAGAAGTCACCCATCCTAG
* **
27290014 TACTACTCTCGCCCGAA-CACGCTTGACTGCTG-AGTTCTGATGGGATCCGGTGCATTAGTGCTG
191 TACTACTCTCGCCC-AAGCACGCTTAAC-AATGAAGTTCTGATGGGATCCGGTGCATTAGTGCTG
* * * ** *
27290077 GTATGATCACACCCGTCAACCCTTGCGCAATCTATTTATATAAAGG
254 GTATAATCGCACCTGTCAATTCTTGCGCAATCTATTTACATAAAGG
* *
27290123 CTACCCCTTATTC-CACTTGCGCCAT-GAATTTGAATGCAAATTCAACCAAATAACGTTTCAAAT
1 CTACCCCTTA-TCGCACTTGCGCC-TCGAATTTGAATGCAAATTCAACCAAATGACATTTCAAAT
* ** * * * * ***
27290186 TATTTATTTCGCAAAACGCAAATAACTAA-TAACT-AATTA-G-TTAAACAATGTTCA-AAAAAA
64 GATTTATTTCGCAAAACAAAAATAACTAATTAAATAAATGATGTTTAAAAAACGCAAATAAAAAA
* * * * *
27290246 TTTATATAAAATAAAATGGGAGGGGTGCAACACGAGAACTTCCCAAGAGGTCACCCATGCTACTA
129 ATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC-AGAAGTCACCCATCCTAGTA
* * * * * * *
27290311 CTGCTCTCGTCCAGGCACGCTTAACTACGAAATTCTGATGGGATCCGGTGCATTAGTGTTGGTAT
193 CTACTCTCGCCCAAGCACGCTTAACAATGAAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTAT
* ** * ** * * *
27290376 GATTACACCCGTCAACCCTTTCGCAATCTATTTATATAACGG
258 AATCGCACCTGTCAATTCTTGCGCAATCTATTTACATAAAGG
27290418 CTACCCCTTATC
1 CTACCCCTTATC
27290430 TGTAACAGCC
Statistics
Matches: 772, Mismatches: 117, Indels: 46
0.83 0.13 0.05
Matches are distributed among these distances:
294 8 0.01
295 160 0.21
297 8 0.01
298 1 0.00
299 4 0.01
300 127 0.16
301 442 0.57
302 22 0.03
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (299 bp):
CTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCAACCAAATGACATTTCAAATGA
TTTATTTCGCAAAACAAAAATAACTAATTAAATAAATGATGTTTAAAAAACGCAAATAAAAAAAT
TATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGAAGTCACCCATCCTAGTACTA
CTCTCGCCCAAGCACGCTTAACAATGAAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATAAT
CGCACCTGTCAATTCTTGCGCAATCTATTTACATAAAGG
Found at i:27290193 original size:602 final size:595
Alignment explanation
Indices: 27289221--27290375 Score: 1477
Period size: 602 Copynumber: 1.9 Consensus size: 595
27289211 AATAACATTT
** * *
27289221 CTACCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACCAAATAAAGTTTCAAATGA
1 CTACCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCAACCAAAGAAAGTTTCAAATGA
** * *
27289286 TTTATTTCGCAAAACGTAAATAACTAATTAAATAAATGATGTTTAGAAAATGCAAATAAAAATAA
66 TTTATTTCGCAAAACAAAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAAAAA
* * *
27289351 TTATATAAAATCAATGAGAGGGGTGCAACACAAAGAATTTCGAAAAGGTCATCCATCCTAGTACT
131 TTATATAAAATAAATGAGAGGGGTCCAACACAAAGAATTTCGAAAAGGTCACCCATCCTAGTACT
* ** *
27289416 ACTCTCTCCCAAGCACGCTTAACAATGAAGTTCTGATGGAATCCGGTGCATTAGTTTTGGTATTA
196 ACTCTCGCCCAAGCACGCTTAACAATGAAGTTCTGATGGAATCCGGTGCATTAGTGCTGGTATGA
** * ** *
27289481 TCGGACTCGTCAATTCTTGTGCAATCTATTTACATAAAGGCTACCCCTTATCACACTTGCGCCTC
261 TCACACCCGTCAACCCTTGCGCAATCTATTTACATAAAGGCTACCCCTTATCACACTTGCGCCTC
** ** *
27289546 AAATTTGAATACAAATTTGACCAAATGGCATTTCAATTGATTTATTTTGCAAAACAAAAATAACT
326 AAATTTGAATACAAATTCAACCAAATAACATTTCAATTGATTTATTTCGCAAAACAAAAATAACT
*
27289611 ATTTAAATACATGATGTGTAAAAAACGCAATT-AATAAAAA-TTATATAAAATAAAATGGGAGGG
391 A-ATAAATA-ATGA-GT-TAAAAAACG---TTCAA-AAAAATTTATATAAAATAAAATGGGAGGG
* * *
27289674 GTGCAACACGAGGACTTCCC-AGCAAGACACCCATCCTAGTACTGCTCTCACCCAAGCACGTTTA
448 GTGCAACACGAGAACTTCCCAAG-AAGACACCCATCCTACTACTGCTCTCACCCAAGCACGCTTA
* * * *
27289738 GCAATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATAATCGCACCTGTTAATTCTTGCA
512 ACAACGAAATTCTGATGGGATCCGATGCATTAGTGCTGGTATAATCGCACCTGTTAATTCTTGCA
27289803 TAATCTGTTTACATAAAGG
577 TAATCTGTTTACATAAAGG
* *
27289822 CTACCGCTTATCGCACTTGCACCTCGAATTCT-AATG-AAATTTCAACCAAAGAACGTTTCAAAT
1 CTACCCCTTATCGCACTTGCACCTCGAATT-TGAATGCAAA-TTCAACCAAAGAAAGTTTCAAAT
*
27289885 GATTTATTTCGCAATACAAAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAAA
64 GATTTATTTCGCAAAACAAAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAAA
* * * * **
27289950 AATTATATAAAATAAAATGGGAGGGGTCCAACACGAGGACTTTCCG-GGAGGTCACCCATCCTAG
129 AATTATATAAAAT-AAATGAGAGGGGTCCAACACAAAGAATTT-CGAAAAGGTCACCCATCCTAG
* ** *
27290014 TACTACTCTCGCCCGAA-CACGCTTGACTGCTG-AGTTCTGATGGGATCCGGTGCATTAGTGCTG
192 TACTACTCTCGCCC-AAGCACGCTTAAC-AATGAAGTTCTGATGGAATCCGGTGCATTAGTGCTG
*
27290077 GTATGATCACACCCGTCAACCCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATTC-CACTT
255 GTATGATCACACCCGTCAACCCTTGCGCAATCTATTTACATAAAGGCTACCCCTTA-TCACACTT
* * * *
27290141 GCGCCAT-GAATTTGAATGCAAATTCAACCAAATAACGTTTCAAATT-ATTTATTTCGCAAAACG
319 GCGCC-TCAAATTTGAATACAAATTCAACCAAATAACATTTC-AATTGATTTATTTCGCAAAACA
* * * * *
27290204 CAAATAACTAATAACTAATTAGTTAAACAATGTTCAAAAAAATTTATATAAAATAAAATGGGAGG
382 AAAATAACTAATAAATAATGAGTTAAAAAACGTTCAAAAAAATTTATATAAAATAAAATGGGAGG
* * * ** *
27290269 GGTGCAACACGAGAACTTCCCAAGAGGTCACCCATGCTACTACTGCTCTCGTCCAGGCACGCTTA
447 GGTGCAACACGAGAACTTCCCAAGAAGACACCCATCCTACTACTGCTCTCACCCAAGCACGCTTA
* * *
27290334 ACTACGAAATTCTGATGGGATCCGGTGCATTAGTGTTGGTAT
512 ACAACGAAATTCTGATGGGATCCGATGCATTAGTGCTGGTAT
27290376 GATTACACCC
Statistics
Matches: 476, Mismatches: 66, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
595 7 0.01
596 112 0.24
597 2 0.00
598 7 0.01
599 2 0.00
600 6 0.01
601 129 0.27
602 198 0.42
603 13 0.03
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (595 bp):
CTACCCCTTATCGCACTTGCACCTCGAATTTGAATGCAAATTCAACCAAAGAAAGTTTCAAATGA
TTTATTTCGCAAAACAAAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAAAAA
TTATATAAAATAAATGAGAGGGGTCCAACACAAAGAATTTCGAAAAGGTCACCCATCCTAGTACT
ACTCTCGCCCAAGCACGCTTAACAATGAAGTTCTGATGGAATCCGGTGCATTAGTGCTGGTATGA
TCACACCCGTCAACCCTTGCGCAATCTATTTACATAAAGGCTACCCCTTATCACACTTGCGCCTC
AAATTTGAATACAAATTCAACCAAATAACATTTCAATTGATTTATTTCGCAAAACAAAAATAACT
AATAAATAATGAGTTAAAAAACGTTCAAAAAAATTTATATAAAATAAAATGGGAGGGGTGCAACA
CGAGAACTTCCCAAGAAGACACCCATCCTACTACTGCTCTCACCCAAGCACGCTTAACAACGAAA
TTCTGATGGGATCCGATGCATTAGTGCTGGTATAATCGCACCTGTTAATTCTTGCATAATCTGTT
TACATAAAGG
Found at i:27290821 original size:12 final size:12
Alignment explanation
Indices: 27290804--27290828 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27290794 GAAATTAGCT
27290804 AAAGGAAAAGAA
1 AAAGGAAAAGAA
27290816 AAAGGAAAAGAA
1 AAAGGAAAAGAA
27290828 A
1 A
27290829 GCCATATTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAGGAAAAGAA
Found at i:27293529 original size:68 final size:68
Alignment explanation
Indices: 27293433--27293590 Score: 280
Period size: 68 Copynumber: 2.3 Consensus size: 68
27293423 TTCACTTGGA
* * * *
27293433 ATCACTCATGCGACCTAGCTATATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCT
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
27293498 CGT
66 CGT
27293501 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
27293566 CGT
66 CGT
27293569 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
27293591 TATATAGTAT
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 86 1.00
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:27293607 original size:68 final size:68
Alignment explanation
Indices: 27293433--27293616 Score: 250
Period size: 68 Copynumber: 2.7 Consensus size: 68
27293423 TTCACTTGGA
* * *
27293433 ATCACTCATGCGACCTAGCTA-TATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATC
1 ATCACACATGTGACCTAGCTACTATTTATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATC
*
27293497 TCGT
65 CCGT
*
27293501 ATCACACATGTGACCTAGCTAC-ATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATC
1 ATCACACATGTGACCTAGCTACTATTTATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATC
27293565 CCGT
65 CCGT
*
27293569 ATCACACATGTGACCTAGCTACTATATAGTATCT-CGTAGC-CTTCTTGT
1 ATCACACATGTGACCTAGCTACTATTTA-TATCTACGTAGCTC-TCTTGT
27293617 ACACATGATG
Statistics
Matches: 107, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
67 1 0.01
68 98 0.92
69 4 0.04
70 4 0.04
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACTATTTATATCTACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:27297134 original size:43 final size:43
Alignment explanation
Indices: 27297024--27297226 Score: 254
Period size: 41 Copynumber: 4.8 Consensus size: 43
27297014 CATAGGATTT
* *
27297024 TCGATATGTGATTACGTTTAAGACCATGTTTGGGACATCGGCA
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCA
* * **
27297067 TCG-TATTTGATT-CGTGTAAGACCATGTCTGGGACGTTAGCA
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCA
27297108 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCA
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCA
* *
27297151 TC-ATATTTGATT-CGTGTAAGACCTTGTCTGGGACAGT-GGCA
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACA-TCGGCA
* * * *
27297192 TCAATATGTGATTACATGTAAGACAACGTCTGGGA
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGA
27297227 TGTTGGGGTT
Statistics
Matches: 138, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
41 55 0.40
42 35 0.25
43 48 0.35
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCA
Found at i:27297165 original size:84 final size:84
Alignment explanation
Indices: 27297024--27297226 Score: 309
Period size: 84 Copynumber: 2.4 Consensus size: 84
27297014 CATAGGATTT
* * *
27297024 TCGATATGTGATTACGTTTAAGACCATGTTTGGGACATCGGCATCGTATTTGATTCGTGTAAGAC
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCATCATATTTGATTCGTGTAAGAC
27297089 CATGTCTGGGAC-GTTAGCA
66 CATGTCTGGGACAG-TAGCA
27297108 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCATCATATTTGATTCGTGTAAGAC
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCATCATATTTGATTCGTGTAAGAC
* *
27297173 CTTGTCTGGGACAGTGGCA
66 CATGTCTGGGACAGTAGCA
* * * *
27297192 TCAATATGTGATTACATGTAAGACAACGTCTGGGA
1 TCGATATGTGATTACGTGTAAGACCATGTCTGGGA
27297227 TGTTGGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
84 108 0.99
85 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (84 bp):
TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCATCATATTTGATTCGTGTAAGAC
CATGTCTGGGACAGTAGCA
Found at i:27297467 original size:56 final size:55
Alignment explanation
Indices: 27297240--27297467 Score: 334
Period size: 56 Copynumber: 4.1 Consensus size: 55
27297230 TGGGGTTGGA
* *
27297240 CGATATGTGTGTGCGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATT
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* *
27297295 CCA-ATATGTGTGCGAGTAAGACCACGTTTAATGCGTTGGCATCGATATGTGATT
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* *
27297349 CTGATA-AGTGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGATT
1 C-GATATA-TGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* *
27297405 CTGATATATGTGTTCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTT
1 C-GATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGA-TT
27297462 CGATAT
1 CGATAT
27297468 GAGGTTATGT
Statistics
Matches: 156, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
54 49 0.31
55 4 0.03
56 99 0.63
57 4 0.03
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (55 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
Found at i:27298845 original size:13 final size:14
Alignment explanation
Indices: 27298817--27298849 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
27298807 CATTTCGGCC
*
27298817 ATGTTTATATTTAT
1 ATGTTTATATTGAT
27298831 ATGTTT-TATTGAT
1 ATGTTTATATTGAT
27298844 ATGTTT
1 ATGTTT
27298850 GTTTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (14 bp):
ATGTTTATATTGAT
Found at i:27308566 original size:5 final size:5
Alignment explanation
Indices: 27308556--27308586 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
27308546 CAAGTTATAC
*
27308556 GAAAA GAAAA GAAAA GAAAA GAAAA CAAAA G
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA G
27308587 CTAATTTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.77, C:0.03, G:0.19, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:27312023 original size:84 final size:84
Alignment explanation
Indices: 27311882--27312080 Score: 249
Period size: 84 Copynumber: 2.4 Consensus size: 84
27311872 TATTTTCGAC
* * ** ** *
27311882 ATGTGATTACGTGCAAGGCCATGTCTGGGACATTGGCATCGTATTTGATTTGTGTAAGACCAC-G
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATTTGATTCATGTAAGACC-CTA
27311946 TCAGGGAC-GTTGGCATAGAT
65 TCAGGGACAG-TGGCATAGAT
* *
27311966 ATGTGATTACGTGTAAGACCATGTCTAGGACATCAGCGTCGTATTTGATTCATGTAAGACCCTAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATTTGATTCATGTAAGACCCTAT
* *
27312031 CTGGGACAGTGGCATCGAT
66 CAGGGACAGTGGCATAGAT
* *
27312050 ATGTGATTACATGTAAGACCACGTCTGGGAC
1 ATGTGATTACGTGTAAGACCATGTCTGGGAC
27312081 GTTGGCATTG
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
83 1 0.01
84 97 0.98
85 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (84 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATTTGATTCATGTAAGACCCTAT
CAGGGACAGTGGCATAGAT
Found at i:27312077 original size:43 final size:43
Alignment explanation
Indices: 27311877--27312088 Score: 179
Period size: 43 Copynumber: 5.0 Consensus size: 43
27311867 AATAGTATTT
* * * * *
27311877 TCGACATGTGATTACGTGCAAGGCCATGTCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCA
* * *
27311920 TCG-TATTTGATT-TGTGTAAGACCACGTCAGGGAC-GTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACAG-TGGCA
* * * * *
27311961 TAGATATGTGATTACGTGTAAGACCATGTCTAGGACA-TCAGCG
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACAGT-GGCA
* * *
27312004 TCG-TATTTGATT-CATGTAAGACC-CTATCTGGGACAGTGGCA
1 TCGATATGTGATTACGTGTAAGACCAC-GTCTGGGACAGTGGCA
*
27312045 TCGATATGTGATTACATGTAAGACCACGTCTGGGAC-GTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACAG-TGGCA
27312088 T
1 T
27312089 TGTACGATAT
Statistics
Matches: 132, Mismatches: 26, Indels: 22
0.73 0.14 0.12
Matches are distributed among these distances:
41 47 0.36
42 34 0.26
43 50 0.38
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCA
Found at i:27312181 original size:56 final size:56
Alignment explanation
Indices: 27312093--27312320 Score: 366
Period size: 56 Copynumber: 4.1 Consensus size: 56
27312083 TGGCATTGTA
*
27312093 CGATATGTGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCAATATGTGATTC
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
*
27312149 CGATATGTGTGTGCGAGTAAGACCACGCTTAATACGTTGGCATCAATATGTGATTC
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
* * * *
27312205 CGATATGTGTGTGCAAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTT
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
* * * *
27312261 TGATATGTGTGTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTC
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
27312317 CGAT
1 CGAT
27312321 GTGTTTATGA
Statistics
Matches: 158, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 158 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (56 bp):
CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
Found at i:27326652 original size:25 final size:24
Alignment explanation
Indices: 27326610--27326657 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
27326600 AAACTGAAAT
27326610 AGTATTAAATGAAAATAAAATAAAA
1 AGTATTAAATGAAAAT-AAATAAAA
*
27326635 AGTACTTAAA-GAATATAAATAAA
1 AGTA-TTAAATGAAAATAAATAAA
27326658 GATAGAAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
25 9 0.43
26 5 0.24
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (24 bp):
AGTATTAAATGAAAATAAATAAAA
Found at i:27333166 original size:51 final size:48
Alignment explanation
Indices: 27333056--27333197 Score: 142
Period size: 51 Copynumber: 2.8 Consensus size: 48
27333046 ATGCGTACCC
* *
27333056 GATAGCTTTGATCACATGTGTGGTACTAAGTGCAGGCCACGCTCTGTAAAA
1 GATAGCTTTG-TCACAAGTGTGGTACTATGTGCAGGCCA--CTCTGTAAAA
* *
27333107 GATAGCTTTTGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAA
1 GATAGC-TTTGTCACAAGTGTGGTACTATGTGCAGGCCACTCTGT-AA-AA
* * *
27333158 GGTCGCTTTGACTACAAAG-GTGGTACTATGTGCAGGCCAC
1 GATAGCTTTGTC-AC-AAGTGTGGTACTATGTGCAGGCCAC
27333198 CGGGCATCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
49 5 0.06
50 7 0.09
51 59 0.76
52 7 0.09
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (48 bp):
GATAGCTTTGTCACAAGTGTGGTACTATGTGCAGGCCACTCTGTAAAA
Found at i:27333613 original size:12 final size:11
Alignment explanation
Indices: 27333587--27333614 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
27333577 GAAAATAATT
27333587 AAAAATTGTAC
1 AAAAATTGTAC
27333598 AAAAATTGTAC
1 AAAAATTGTAC
27333609 AAAAAT
1 AAAAAT
27333615 GAGTCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.25
Consensus pattern (11 bp):
AAAAATTGTAC
Found at i:27335758 original size:13 final size:13
Alignment explanation
Indices: 27335742--27335766 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27335732 AAAATTCTGA
27335742 TCATCTTTTCTTC
1 TCATCTTTTCTTC
27335755 TCATCTTTTCTT
1 TCATCTTTTCTT
27335767 TATTTCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (13 bp):
TCATCTTTTCTTC
Found at i:27336439 original size:8 final size:8
Alignment explanation
Indices: 27336426--27336457 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
27336416 CTAGATCGGC
27336426 AAAAGCCG
1 AAAAGCCG
27336434 AAAAGCCG
1 AAAAGCCG
*
27336442 AAATGCCG
1 AAAAGCCG
27336450 AAAAGCCG
1 AAAAGCCG
27336458 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:27336726 original size:28 final size:28
Alignment explanation
Indices: 27336686--27336749 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
27336676 TGTACTAGAG
*
27336686 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATGACCATTA
*
27336714 TACCCCTATGTATGCAAAATGACCTTTA
1 TACCCCTATGTATGCAAAATGACCATTA
*
27336742 TACTCCTA
1 TACCCCTA
27336750 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.33
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCATTA
Found at i:27336901 original size:27 final size:27
Alignment explanation
Indices: 27336843--27336932 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
27336833 AGGAAGCGTC
27336843 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
27336871 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
27336898 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
27336927 CTGGTG
1 CTGGTG
27336933 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:27336951 original size:55 final size:56
Alignment explanation
Indices: 27336843--27336957 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
27336833 AGGAAGCGTC
* *
27336843 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
27336898 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
27336954 CTGG
1 CTGG
27336958 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:27340935 original size:79 final size:82
Alignment explanation
Indices: 27340824--27341008 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 82
27340814 GCTACTCGTT
* * * *
27340824 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCATAAATGCCTTCGGGA-CTTA-ACC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTC-GGATCTTAGACC
* *
27340886 TGGATTTAGTAAC-TCGCA
65 -GGATATAGTAACTTAGCA
*
27340904 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAAATCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTCGGATCTTAGACCG
*
27340967 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
27340984 CAAA-ACCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27341009 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 52 0.57
80 36 0.40
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTCGGATCTTAGACCG
GATATAGTAACTTAGCA
Found at i:27341008 original size:40 final size:40
Alignment explanation
Indices: 27340807--27341008 Score: 216
Period size: 40 Copynumber: 5.1 Consensus size: 40
27340797 GAATTTAACT
** *
27340807 GGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * * *
27340847 GGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCT
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
27340887 GGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
27340926 GGA-ATTAGTAAATCGCACAAATGCCTTC-GGATCTTAGTCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCC
* * *
27340966 GGATATAGTCACTTAGCACAAA-ACCTTCGGGACTTAGCCC
1 GGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
27341006 GGA
1 GGA
27341009 CATCATTCGA
Statistics
Matches: 135, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.24
40 89 0.66
41 12 0.09
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:27341725 original size:2 final size:2
Alignment explanation
Indices: 27341718--27341753 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
27341708 TCACGTGCAA
27341718 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27341754 GCAAGAGCCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27343463 original size:40 final size:40
Alignment explanation
Indices: 27343418--27343584 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
27343408 CGGAATATAA
27343418 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
27343458 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
27343498 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
27343538 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
27343577 CCGGATAT
1 CCGGATAT
27343585 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:27343568 original size:80 final size:79
Alignment explanation
Indices: 27343418--27343584 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
27343408 CGGAATATAA
* *
27343418 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
27343483 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
27343498 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
27343560 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
27343577 CCGGATAT
1 CCGGATAT
27343585 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:27344432 original size:17 final size:19
Alignment explanation
Indices: 27344409--27344454 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
27344399 AAGAAGCATG
27344409 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
27344427 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
27344445 AATCATGCTC
1 AATCATGCTC
27344455 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:27351471 original size:40 final size:40
Alignment explanation
Indices: 27351426--27351592 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
27351416 CGGAATATAA
27351426 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
27351466 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
27351506 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
27351546 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
27351585 CCGGATAT
1 CCGGATAT
27351593 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:27351576 original size:80 final size:79
Alignment explanation
Indices: 27351426--27351592 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
27351416 CGGAATATAA
* *
27351426 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
27351491 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
27351506 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
27351568 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
27351585 CCGGATAT
1 CCGGATAT
27351593 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:27352441 original size:17 final size:19
Alignment explanation
Indices: 27352418--27352463 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
27352408 AAGAAGCATG
27352418 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
27352436 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
27352454 AATCATGCTC
1 AATCATGCTC
27352464 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:27354615 original size:38 final size:38
Alignment explanation
Indices: 27354564--27354639 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
27354554 AAATGAAATG
27354564 GGAGGGGTGCAACATGAGAACTTCCCAAGAGGTCACCT
1 GGAGGGGTGCAACATGAGAACTTCCCAAGAGGTCACCT
27354602 GGAGGGGTGCAACATGAGAACTTCCCAAGAGGTCACCT
1 GGAGGGGTGCAACATGAGAACTTCCCAAGAGGTCACCT
27354640 ATCTTAGTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.24, G:0.32, T:0.16
Consensus pattern (38 bp):
GGAGGGGTGCAACATGAGAACTTCCCAAGAGGTCACCT
Found at i:27359876 original size:34 final size:34
Alignment explanation
Indices: 27359833--27359900 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
27359823 CTCGATGGAT
27359833 TACCTAATGTGATTTTAGCAATATCAGCACAGAA
1 TACCTAATGTGATTTTAGCAATATCAGCACAGAA
27359867 TACCTAATGTGATTTTAGCAATATCAGCACAGAA
1 TACCTAATGTGATTTTAGCAATATCAGCACAGAA
27359901 ATATGTCCGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (34 bp):
TACCTAATGTGATTTTAGCAATATCAGCACAGAA
Found at i:27369869 original size:14 final size:15
Alignment explanation
Indices: 27369840--27369873 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
27369830 TTTCTTGATC
27369840 TAAATTAATATAAAT
1 TAAATTAATATAAAT
*
27369855 TAAATTTAT-TAAAT
1 TAAATTAATATAAAT
27369869 TAAAT
1 TAAAT
27369874 ATTCAACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAATTAATATAAAT
Found at i:27373238 original size:71 final size:71
Alignment explanation
Indices: 27373154--27373317 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
27373144 CGATTTGTCT
27373154 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
27373219 CTTTCA
66 CTTTCA
* *
27373225 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
27373290 CTTTCA
66 CTTTCA
27373296 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
27373318 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:27373355 original size:71 final size:70
Alignment explanation
Indices: 27373154--27373351 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
27373144 CGATTTGTCT
* * * * *
27373154 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
27373219 CTTTCA
65 CTTTCA
* * * *
27373225 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
27373290 CTTTCA
65 CTTTCA
* *
27373296 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
27373352 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:27380772 original size:70 final size:71
Alignment explanation
Indices: 27380689--27380851 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
27380679 CGATTTGTCT
27380689 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
27380753 CTTTCA
66 CTTTCA
*
27380759 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
27380824 CTTTCA
66 CTTTCA
27380830 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
27380852 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:27380889 original size:71 final size:70
Alignment explanation
Indices: 27380689--27380885 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
27380679 CGATTTGTCT
* * * *
27380689 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
27380753 CTTTCA
65 CTTTCA
* * * *
27380759 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
27380824 CTTTCA
65 CTTTCA
* *
27380830 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
27380886 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:27383693 original size:293 final size:290
Alignment explanation
Indices: 27382972--27384730 Score: 1786
Period size: 293 Copynumber: 6.1 Consensus size: 290
27382962 ATTTCTAATA
* * *
27382972 TAAACGATGTTTAACAAAAAATTATATGAAA-A-AAAATGGGATGGGTGCAACATGAGGACTTCC
1 TAAACGATGTTTAAAAAAAAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * * * * ** ** *
27383035 CAGGAGGACAGCCATCCTAGTACTACTTTCGCCCAAGCACGG-TTAGCTGTAGAGCTCTGATAGG
66 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-GGCTCAACTGCGGAATTCTGATGGG
* * * * *
27383099 ATCCGGTGCATTAGTGCTTGTATGATTGCACCCGTCAACTCTTGAGCAATATATTTATATAAAGG
130 ATCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
* *
27383164 CTACCCTTATCGCACTTGCGCCAT-GAATTTGAATGCAAATTCGACCAAATAAA-GTTTCAAATG
195 CTACCCTTATCGCACTTGCGCC-TCGAATTTGAATGCAAATTCGACCAAA-AAACATTTCAAGTG
** * *
27383227 ATTTATTTTGCAAAACAAAAATAATTAATTAGT
258 ATTTATTTCACAAAACACAAATAACTAATTAGT
* * *
27383260 TAAACGATGTTTAACAAAAAATTATATG-AA-ATAAAATGGGATGGGTGCAACACGAGCACTTCC
1 TAAACGATGTTTAAAAAAAAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * * * * *
27383323 AAGTAGGTCACCTATCCTTGTACTACTCTCGCCCAAGCACGCCTC-ACTGCGAAATTCTGATGGG
66 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-GGCTCAACTGCGGAATTCTGATGGG
* *
27383387 ATCCAGCGCATTAGTGC-AGGTATGATCGCACCTGTCAACTCTTGCGCAATCTATTTATATAAAG
130 ATCCAGTGCATTAGTGCTA-GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAG
* * **
27383451 GCTACCCTTTATCGCAGTTGCACCTCGAATTTGAATGCAAATTCGACCAAAAAATGTTTCAAGTG
194 GCTACCC-TTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAAAACATTTCAAGTG
* *
27383516 ATTTATTTCACAAAACCCAAATAAATAATTAGT
258 ATTTATTTCACAAAACACAAATAACTAATTAGT
*
27383549 TAAA-GAATGTTTACAAAAAGAAATTATATGAAATATAAAATGGGAGGGGTAG-AACACGAGGAA
1 TAAACG-ATGTTTA-AAAAA-AAATTATATGAAATATAAAATGGGAGGGGT-GCAACACGAGGAC
* * *
27383612 TTCCCTGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAGTTCAGAT
62 TTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAATTCTGAT
* * * * * * *
27383677 GGGATTCGGTGCATTAGTTCTACTATGATCGCGCTCGTCAACTCTTGTGCAATCTATTTATATAA
127 GGGATCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAA
** * * ** *
27383742 AGGCTACCCGTTATCGCACTTGTACCTCAAATTCGAATAAAAAATT-GACCAAATAACATTTCAA
192 AGGCTACCC-TTATCGCACTTGCGCCTCGAATTTGAAT-GCAAATTCGACCAAAAAACATTTCAA
* ** * *
27383806 GTGACTTATTTCGTAGAACACAAAGAACTAATTAGT
255 GTGATTTATTTCACAAAACACAAATAACTAATTAGT
* * * ** *
27383842 TAAATGATGATTAAAAAAAGAAAATATATGAAATATAAAATGAAAGGGGTGCAACATGAGGACTT
1 TAAACGATG-TTTAAAAAA-AAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTT
* * * ** * ** *
27383907 CCCAAGAGGTCACCCATTCTAGTACTACTCTTG-CCAAGCACACTTAACTATGGAATTTTGATGG
64 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAATTCTGATGG
* * *
27383971 GATCCATTGCATTAGTGCTAGTATGATCGTACCCGTCAACTC-T-AGC-A-C----------AA-
129 GATCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAG
* * *
27384021 --T---C-TATCGCACTTACGCCTCGAATTTGAATGAAAATTCGA-CAAAATAACATTTCAAGTT
194 GCTACCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAA-AACATTTCAAGTG
* *
27384079 ATTTATTTTACAAAACACAAATAACGAATTAGT
258 ATTTATTTCACAAAACACAAATAACTAATTAGT
* * * * * *
27384112 TAAACGATGTTTAAAAAAGAATTTTTTTGAAATATAAAATGGGAGAGGTGCAACATGACGACTTC
1 TAAACGATGTTTAAAAAA-AAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTC
* * * * *
27384177 CCAGGAGGTTAGCCATCCTAGTACTACTCT-GCCCAAGCACGCCCAACTGCGGAGTTCTGATGGG
65 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAATTCTGATGGG
* * * * * * *
27384241 ATCCAATGCAATAGTGCTGGAATGATCACACCCGTCAACTCTTGCGCAATTTACTTATATAAAGG
130 ATCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
* * * *
27384306 CTACCCCTTATCGCACTTGCGCCTTGAATTTGAATACAAATTCGACCAGATAACATTTCAAGTGA
195 CTA-CCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAAAACATTTCAAGTGA
* *
27384371 TTTATTTCA-AAAAAATGCAAATGACTAATTAGT
259 TTTATTTCACAAAACA--CAAATAACTAATTAGT
** * * *
27384404 TAAATTATGTTT-AAAAAAAATTATATGAAATATAAAATGGAAAGGGTGCAACACGAGGAGTTCC
1 TAAACGATGTTTAAAAAAAAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * * * * * *
27384468 GAGGAGGTCACCCATCCTACTACTACTATCGCCCAAGCATGCTTAAGTGTGGAATTCTGATGGGA
66 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAATTCTGATGGGA
* * * * * * *
27384533 TCCGGTGCATTAGTGCTAGTAAGATCGCACCTGTCAAATCTTG-TCAATCTATTCATAAAAAGGC
131 TCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * *
27384597 TACTCCTTATCACACTTGTGCCTCGAATTTGAATGCAAATTCGACCAAATAAA-ATTTAAAGTGA
196 TAC-CCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAA-AAACATTTCAAGTGA
* *
27384661 TTTAATTC-CTAAAACGA-AAATAACGAATTAGT
259 TTTATTTCAC-AAAAC-ACAAATAACTAATTAGT
*
27384693 TAAACGATG-TTCAAAAAAAATTATATGAAATATAAAAT
1 TAAACGATGTTTAAAAAAAAATTATATGAAATATAAAAT
27384731 ATGTAACAGC
Statistics
Matches: 1215, Mismatches: 203, Indels: 105
0.80 0.13 0.07
Matches are distributed among these distances:
268 1 0.00
269 143 0.12
270 71 0.06
271 2 0.00
272 2 0.00
275 1 0.00
278 2 0.00
283 2 0.00
286 1 0.00
287 3 0.00
288 174 0.14
289 136 0.11
290 149 0.12
291 139 0.11
292 92 0.08
293 286 0.24
294 11 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (290 bp):
TAAACGATGTTTAAAAAAAAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCC
CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAATTCTGATGGGA
TCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
TACCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAAAACATTTCAAGTGATT
TATTTCACAAAACACAAATAACTAATTAGT
Found at i:27384629 original size:290 final size:289
Alignment explanation
Indices: 27384023--27384730 Score: 834
Period size: 290 Copynumber: 2.4 Consensus size: 289
27384013 TAGCACAATC
* * * *
27384023 TATCGCACTTACGCCTCGAATTTGAATGA-AAATTCGACAAAATAACATTTCAAGTTATTTATTT
1 TATCACACTTGCGCCTCGAATTTGAAT-ACAAATTCGACCAAATAACATTTCAAGTGATTTATTT
* * * *
27384087 TACAAAACA-CAAATAACGAATTAGTTAAACGATGTTTAAAAAAGAATTTTTTTGAAATATAAAA
65 CA-AAAAAAGCAAATAACGAATTAGTTAAACGATGTTTAAAAAA-AA-TTATATGAAATATAAAA
* * * * * *
27384151 TGGGAGAGGTGCAACATGACGACTTCCCAGGAGGTTAGCCATCCTAGTACTACTCTGCCCAAGCA
127 TGGAAGAGGTGCAACACGACGACTTCCCAGGAGGTCACCCATCCTACTACTACTATGCCCAAGCA
* *
27384216 CGCCCAACTGCGGAGTTCTGATGGGATCCAATGCAATAGTGCTGGAATGATCACACCCGTCAACT
192 CGCCCAACTGCGGAATTCTGATGGGATCCAATGCAATAGTGCTGGAATGATCACACCCGTCAAAT
* *
27384281 CTTGCGCAATTTACTTATATAAAGGCTACCCCT
257 CTTGCGCAATCTACTTATAAAAAGGCTACCCCT
* * *
27384314 TATCGCACTTGCGCCTTGAATTTGAATACAAATTCGACCAGATAACATTTCAAGTGATTTATTTC
1 TATCACACTTGCGCCTCGAATTTGAATACAAATTCGACCAAATAACATTTCAAGTGATTTATTTC
* * **
27384379 AAAAAAATGCAAATGACTAATTAGTTAAATTATGTTTAAAAAAAATTATATGAAATATAAAATGG
66 AAAAAAA-GCAAATAACGAATTAGTTAAACGATGTTTAAAAAAAATTATATGAAATATAAAATGG
* * * *
27384444 AA-AGGGTGCAACACGAGGAGTTCCGAGGAGGTCACCCATCCTACTACTACTATCGCCCAAGCAT
130 AAGA-GGTGCAACACGACGACTTCCCAGGAGGTCACCCATCCTACTACTACTAT-GCCCAAGCAC
** * * ** * * * *
27384508 GCTTAAGTGTGGAATTCTGATGGGATCCGGTGCATTAGTGCTAGTAA-GATCGCACCTGTCAAAT
193 GCCCAACTGCGGAATTCTGATGGGATCCAATGCAATAGTGCT-GGAATGATCACACCCGTCAAAT
* *
27384572 CTTG-TCAATCTA-TTCATAAAAAGGCTACTCCT
257 CTTGCGCAATCTACTT-ATAAAAAGGCTACCCCT
* * * * *
27384604 TATCACACTTGTGCCTCGAATTTGAATGCAAATTCGACCAAATAAAATTTAAAGTGATTTAATTC
1 TATCACACTTGCGCCTCGAATTTGAATACAAATTCGACCAAATAACATTTCAAGTGATTTATTTC
** * * *
27384669 CTAAAACGAAAATAACGAATTAGTTAAACGATGTTCAAAAAAAATTATATGAAATATAAAAT
66 AAAAAAAGCAAATAACGAATTAGTTAAACGATGTTTAAAAAAAATTATATGAAATATAAAAT
27384731 ATGTAACAGC
Statistics
Matches: 354, Mismatches: 56, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
289 52 0.15
290 148 0.42
291 121 0.34
292 33 0.09
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (289 bp):
TATCACACTTGCGCCTCGAATTTGAATACAAATTCGACCAAATAACATTTCAAGTGATTTATTTC
AAAAAAAGCAAATAACGAATTAGTTAAACGATGTTTAAAAAAAATTATATGAAATATAAAATGGA
AGAGGTGCAACACGACGACTTCCCAGGAGGTCACCCATCCTACTACTACTATGCCCAAGCACGCC
CAACTGCGGAATTCTGATGGGATCCAATGCAATAGTGCTGGAATGATCACACCCGTCAAATCTTG
CGCAATCTACTTATAAAAAGGCTACCCCT
Found at i:27384712 original size:852 final size:851
Alignment explanation
Indices: 27383171--27384730 Score: 2105
Period size: 852 Copynumber: 1.8 Consensus size: 851
27383161 AGGCTACCCT
* * *
27383171 TATCGCACTTGCGCCATGAATTTGAATGCAAATTCGACCAAATAAAGTTTCAAATGATTTATTTT
1 TATCGCACTTACGCCATGAATTTGAATGAAAATTCGACAAAATAAAGTTTCAAATGATTTATTTT
* **
27383236 GCAAAACAAAAATAATTAATTAGTTAAACGATGTTTAACAAAAAATTATATGAAATAAAATGGGA
66 ACAAAACAAAAATAACGAATTAGTTAAACGATGTTTAACAAAAAATTATATGAAATAAAATGGGA
* *
27383301 TGGGTGCAACACGAGCACTTCCAAGTAGGTCACCTATCCTTGTACTACTCTCGCCCAAGCACGCC
131 TGGGTGCAACACGAGCACTTCCAAGGAGGTCACCTATCCTAGTACTACTCTCGCCCAAGCACGCC
* * * * *
27383366 TCACTGCGAAATTCTGATGGGATCCAGCGCATTAGTGCAGGTATGATCGCACCTGTCAACTCTTG
196 TCACTGCGAAATTCTGATGGGATCCAACGCAATAGTGCAGGAATGATCACACCCGTCAACTCTTG
* * * *
27383431 CGCAATCTATTTATATAAAGGCTACCCTTTATCGCAGTTGCACCTCGAATTTGAATGCAAATTCG
261 CGCAATCTACTTATATAAAGGCTACCCCTTATCGCACTTGCACCTCGAATTTGAATACAAATTCG
** *
27383496 ACCAAAAAATGTTTCAAGTGATTTATTTCACAAAACCCAAATAAATAATTAGTTAAAGAATGTTT
326 ACCAAAAAACATTTCAAGTGATTTATTTCAAAAAACCCAAATAAATAATTAGTTAAAGAATGTTT
* * *
27383561 ACAAAAAGAAATTATATGAAATATAAAATGGGAGGGGTAGAACACGAGGAATTCCCTGGAGGTCA
391 A-AAAAAGAAATTATATGAAATATAAAATGGAAAGGGTAGAACACGAGGAATTCCCAGGAGGTCA
* * * *
27383626 CCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAGTTCAGATGGGATTCGGTGCAT
455 CCCATCCTACTACTACTATCGCCCAAGCAGGCTCAACTGCGGAATTCAGATGGGATCCGGTGCAT
* * * * * *
27383691 TAGTTCTACTATGATCGCGCTCGTCAACTCTTGTGCAATCTATTTATATAAAGGCTACCCGTTAT
520 TAGTGCTACTAAGATCGCCCTCGTCAAATCTTGTGCAATCTATTCATAAAAAGGCTACCCGTTAT
* * * * *
27383756 CGCACTTGTACCTCAAATTCGAATAAAAAATTGACCAAATAACATTTCAAGTGACTTATTTCGTA
585 CACACTTGTACCTCAAATTCGAATAAAAAATTGACCAAATAAAATTTAAAGTGACTTAATTCCTA
* * *
27383821 GAACACAAAGAACTAATTAGTTAAATGATGATTAAAAAAAGAAAATATATGAAATATAAAATGAA
650 AAACACAAAGAACGAATTAGTTAAACGATGATTAAAAAAAGAAAATATATGAAATATAAAATGAA
27383886 AGGGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATTCTAGTACTACTCTTGCCAAGCACACT
715 AGGGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATTCTAGTACTACTCTTGCCAAGCACACT
27383951 TAACTATGGAATTTTGATGGGATCCATTGCATTAGTGCTAGTATGATCGTACCCGTCAACTCTAG
780 TAACTATGGAATTTTGATGGGATCCATTGCATTAGTGCTAGTATGATCGTACCCGTCAACTCTAG
27384016 CACAATC
845 CACAATC
* *
27384023 TATCGCACTTACGCC-TCGAATTTGAATGAAAATTCGACAAAATAACA-TTTCAAGTTATTTATT
1 TATCGCACTTACGCCAT-GAATTTGAATGAAAATTCGACAAAATAA-AGTTTCAAATGATTTATT
* * *
27384086 TTACAAAACACAAATAACGAATTAGTTAAACGATGTTTAA-AAAAGAATTTTTTTGAAATATAAA
64 TTACAAAACAAAAATAACGAATTAGTTAAACGATGTTTAACAAAA-AA-TTATATG-AA-ATAAA
* * *
27384150 ATGGGA-GAGGTGCAACATGA-CGACTTCCCAGGAGGTTAGCC-ATCCTAGTACTACTCT-GCCC
125 ATGGGATG-GGTGCAACACGAGC-ACTTCCAAGGAGGTCA-CCTATCCTAGTACTACTCTCGCCC
* * * *
27384211 AAGCACGCC-CAACTGCGGAGTTCTGATGGGATCCAATGCAATAGTGCTGGAATGATCACACCCG
187 AAGCACGCCTC-ACTGCGAAATTCTGATGGGATCCAACGCAATAGTGCAGGAATGATCACACCCG
* * *
27384275 TCAACTCTTGCGCAATTTACTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTTGAATTTGAA
251 TCAACTCTTGCGCAATCTACTTATATAAAGGCTACCCCTTATCGCACTTGCACCTCGAATTTGAA
* * ** * *
27384340 TACAAATTCGACCAGATAACATTTCAAGTGATTTATTTCAAAAAAATGCAAATGACTAATTAGTT
316 TACAAATTCGACCAAAAAACATTTCAAGTGATTTATTTC-AAAAAACCCAAATAAATAATTAGTT
** *
27384405 AAATTATGTTT-AAAAA-AAATTATATGAAATATAAAATGGAAAGGGT-GCAACACGAGGAGTTC
380 AAAGAATGTTTAAAAAAGAAATTATATGAAATATAAAATGGAAAGGGTAG-AACACGAGGAATTC
* * * * * *
27384467 CGAGGAGGTCACCCATCCTACTACTACTATCGCCCAAGCATGCTTAAGTGTGGAATTCTGATGGG
444 CCAGGAGGTCACCCATCCTACTACTACTATCGCCCAAGCAGGCTCAACTGCGGAATTCAGATGGG
*
27384532 ATCCGGTGCATTAGTGCTAGTAAGATCGCACCT-GTCAAATCTTGT-CAATCTATTCATAAAAAG
509 ATCCGGTGCATTAGTGCTACTAAGATCGC-CCTCGTCAAATCTTGTGCAATCTATTCATAAAAAG
* * * **
27384595 GCTACTCC-TTATCACACTTGTGCCTCGAATTTGAAT-GCAAATTCGACCAAATAAAATTTAAAG
573 GCTAC-CCGTTATCACACTTGTACCTCAAATTCGAATAAAAAATT-GACCAAATAAAATTTAAAG
* * * *
27384658 TGATTTAATTCCTAAAACGA-AAATAACGAATTAGTTAAACGATG-TT-CAAAAA-AAATTATAT
636 TGACTTAATTCCTAAAAC-ACAAAGAACGAATTAGTTAAACGATGATTAAAAAAAGAAAATATAT
27384719 GAAATATAAAAT
700 GAAATATAAAAT
27384731 ATGTAACAGC
Statistics
Matches: 611, Mismatches: 81, Indels: 36
0.84 0.11 0.05
Matches are distributed among these distances:
848 20 0.03
849 5 0.01
850 7 0.01
851 103 0.17
852 227 0.37
853 14 0.02
854 154 0.25
855 79 0.13
856 2 0.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (851 bp):
TATCGCACTTACGCCATGAATTTGAATGAAAATTCGACAAAATAAAGTTTCAAATGATTTATTTT
ACAAAACAAAAATAACGAATTAGTTAAACGATGTTTAACAAAAAATTATATGAAATAAAATGGGA
TGGGTGCAACACGAGCACTTCCAAGGAGGTCACCTATCCTAGTACTACTCTCGCCCAAGCACGCC
TCACTGCGAAATTCTGATGGGATCCAACGCAATAGTGCAGGAATGATCACACCCGTCAACTCTTG
CGCAATCTACTTATATAAAGGCTACCCCTTATCGCACTTGCACCTCGAATTTGAATACAAATTCG
ACCAAAAAACATTTCAAGTGATTTATTTCAAAAAACCCAAATAAATAATTAGTTAAAGAATGTTT
AAAAAAGAAATTATATGAAATATAAAATGGAAAGGGTAGAACACGAGGAATTCCCAGGAGGTCAC
CCATCCTACTACTACTATCGCCCAAGCAGGCTCAACTGCGGAATTCAGATGGGATCCGGTGCATT
AGTGCTACTAAGATCGCCCTCGTCAAATCTTGTGCAATCTATTCATAAAAAGGCTACCCGTTATC
ACACTTGTACCTCAAATTCGAATAAAAAATTGACCAAATAAAATTTAAAGTGACTTAATTCCTAA
AACACAAAGAACGAATTAGTTAAACGATGATTAAAAAAAGAAAATATATGAAATATAAAATGAAA
GGGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATTCTAGTACTACTCTTGCCAAGCACACTT
AACTATGGAATTTTGATGGGATCCATTGCATTAGTGCTAGTATGATCGTACCCGTCAACTCTAGC
ACAATC
Found at i:27385406 original size:6 final size:6
Alignment explanation
Indices: 27385385--27385482 Score: 67
Period size: 6 Copynumber: 15.8 Consensus size: 6
27385375 TATTAGAACT
* * * *
27385385 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
27385434 AG-ATGAC AGAATC AGAATC AGTATC AGGTAA-C TGAATC AGAATC AGAAT
1 AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
27385483 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
5 5 0.07
6 55 0.77
7 7 0.10
8 4 0.06
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:27385426 original size:19 final size:19
Alignment explanation
Indices: 27385402--27385454 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
27385392 AAATGAGAAT
*
27385402 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGATGA
*
27385421 CAGAATCAGAATTAGATGA
1 CAGAATCAGAATCAGATGA
27385440 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
27385455 TATCAGGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.45, C:0.15, G:0.23, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATCAGATGA
Found at i:27385430 original size:25 final size:25
Alignment explanation
Indices: 27385397--27385482 Score: 94
Period size: 25 Copynumber: 3.7 Consensus size: 25
27385387 AATCAAAATG
27385397 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
27385422 AGAATCAGAAT-----T-AGATGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
27385441 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
27385466 TGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
27385483 GTGAATGCAA
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
19 17 0.34
20 1 0.02
24 1 0.02
25 31 0.62
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:27385894 original size:22 final size:22
Alignment explanation
Indices: 27385866--27385930 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
27385856 GCAAATACGT
*
27385866 TTGGCACATAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
27385888 TTGGCACAGATCCA-AATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
27385910 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
27385931 AATAATTGGA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 3 0.09
22 28 0.82
23 3 0.09
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:27386396 original size:27 final size:27
Alignment explanation
Indices: 27386364--27386505 Score: 203
Period size: 27 Copynumber: 5.3 Consensus size: 27
27386354 GGGGCAAAAT
* *
27386364 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
27386391 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
27386418 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
27386445 GGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
27386472 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
27386499 GATAATT
1 GGTAATT
27386506 TTGTAAATCG
Statistics
Matches: 101, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:27386531 original size:81 final size:81
Alignment explanation
Indices: 27386365--27386534 Score: 182
Period size: 81 Copynumber: 2.1 Consensus size: 81
27386355 GGGCAAAATG
* * * *
27386365 GTAATTTTACCCTACAAGGGTATCTCGATAATTCTACCTTACAGGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATATTTCTACA
* *** *
27386430 CTACAAGGGTATTTCG
66 ATACAAGGGTAAAACA
* * * *
27386446 GTAATTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGATAATTTTGTA
1 GTAATTCTACCCTACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGAT-A-TTTCTA
*
27386511 -AAT-CGAGGGTAAAACA
64 CAATACAAGGGTAAAACA
27386527 GTAATTCT
1 GTAATTCT
27386535 GCAAATCGGA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
81 66 0.90
82 2 0.03
83 5 0.07
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATATTTCTACA
ATACAAGGGTAAAACA
Found at i:27388172 original size:290 final size:288
Alignment explanation
Indices: 27387456--27389382 Score: 2197
Period size: 290 Copynumber: 6.6 Consensus size: 288
27387446 AGGGTGTTAC
* * * * * * *
27387456 AAAATGGGACGGGTGCAACATGAGGACTTCCCAGGAGGTCACCCATCCTAGCACTACTCTCGCTC
1 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* ** * * * ** * * *
27387521 GAGCACTATTAATTGCAGAGTTCTGATGGGATCCAATGCATTATTGTTGGTATGATCGCACACC-
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATTCGGTGCATTAGTGCTGGTATGATC-TA-ACCG
* *
27387585 TCAACCCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAA
129 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
*
27387650 TTCAAATTCTACCAAATAAC-ATTTCAAGTGATTTATTTCA-TAAAACGCAAATAACTAATTAGT
194 TTCAAATTCGACCAAATAACGA-TTCAAGTGATTTATTT-AGTAAAACGCAAATAACTAATTAGT
* *
27387713 TAAACAATGTTTAAAAAAATTGTATATGAAATAT
257 TAAACGATGTTTAAAAAAA-T-TACATGAAATAT
* *
27387747 AAAAT-GGAAGGGGTGCAACACGAGGACTTCCCAAG-GAGTTACCCATCCTAGTACTACTCTCAC
1 AAAATAGG-AGGGGTGCAACACGAGGACTTCCCAAGAG-GTCACCCATCCTAGTACTACTCT-AG
* * * ** * * ** *
27387810 CCCAA-CATGATTTACTATGAAGTTCTGAAGGGA-TCTGGTATATTAGTGCTGGTATGATCGCAA
63 CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATTC-GGTGCATTAGTGCTGGTATGATC-TAA
* * * *
27387873 CCTTCAACTCTTGAGCAATCTATTTATATAAAGACTTCCCCTTATCGCACTTGCGCCTCAAATTT
126 CCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTT
** * * * *
27387938 GAAAGCAAATTCGACCAAAATAACGATTCATGTGATTTCTTTAGTAAAACGCATATAACTACTTA
191 GAATTCAAATTCGACC-AAATAACGATTCAAGTGATTTATTTAGTAAAACGCAAATAACTAATTA
* *
27388003 GTTAAATGATGTTTAAAAAAATTATATGAAATAT
255 GTTAAACGATGTTTAAAAAAATTACATGAAATAT
* * * *
27388037 AAAATAGGAGTGGTGCAACTCGAGGACTTACCAAAAGGTCACCCATCCTAGTACTACTCTAGCCC
1 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * *
27388102 AAGCACGCTTAACTGCGGAGTTTTGATGGTATTCGGTGCATTAGTGCTGGTATAATCTAACCAGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATTCGGTGCATTAGTGCTGGTATGATCTAACC-GT
** * * * *
27388167 CAACTCCCGCGCACTCTATTCATATAAAGGCTACCCCTTATCACACTTGCGCCTCATATTTGAAT
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
** * * *
27388232 TCAAATTTAACCAAATAACGTTTGAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
195 TCAAATTCGACCAAATAACGATTCAAGTGATTTATTTAGTAAAACGCAAATAACTAATTAGTTAA
27388297 ACGATGTTTAAAAAAATTACATGAAATAT
260 ACGATGTTTAAAAAAATTACATGAAATAT
* * * * *
27388326 AGAATAGGAGGGGTGCAACCCGAGGACTTCCCAAGAGGTCACCCATTCGAGTACAACTCTAGCCC
1 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * * * *
27388391 AAGCACGCTTAATTGCGGAGTTCTGATGGGATCCGGTACATTAGTACTGGTATGATCGCACCCGC
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATTCGGTGCATTAGTGCTGGTATGATC-TAACCGT
* * *
27388456 CAACTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGTGCCTCGAATTTGAAT
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * * *
27388521 TCAAATTCGACTAAATAACGTTTCAAGTAATTTATTTCA-TAAAACGCAAATAAATAATTACTTA
195 TCAAATTCGACCAAATAACGATTCAAGTGATTTATTT-AGTAAAACGCAAATAACTAATTAGTTA
*
27388585 AACTATGTTTAAAAATAAATTACATGAAATAT
259 AACGATGTTT-AAAA-AAATTACATGAAATAT
* * *
27388617 AAAATAGGA-GGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATCTTAGTACAACTCTAGCCC
1 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * **
27388681 AAGCACGCTTAACTACGGAGTTCTGATGGGA-TCGAGTGCATTCGTGCTTGTATGACCGCACCTG
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATTCG-GTGCATTAGTGCTGGTATGATCTAACC-G
* * * * *
27388745 TCAGCTCTTGCGCATTATATTTATATAAAGGCTACCCCTTATTGCACTTGCGCCTCGAATTTGAA
129 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * * * *
27388810 ATCAAATTCAACCAAATAAC-ATTTCAAGTCATTTATTTCGTAAAACGCAAATAACAAATTAGTT
194 TTCAAATTCGACCAAATAACGA-TTCAAGTGATTTATTTAGTAAAACGCAAATAACTAATTAGTT
*
27388874 AAACGATGCTTAAAAATAAATTACATGAAATAT
258 AAACGATG-TTTAAAA-AAATTACATGAAATAT
* * * * *
27388907 AAAATAGGAGGGGTGCAACACGAGGAATTCCCAAGAGATCACCCATCCCAGTACTACTCTTGCCT
1 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
** * * * *
27388972 AAGCACGCTTAACTGTAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATCAT-TGCACACG
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATTCGGTGCATTAGTGCTGGTATGATCT-AAC-CG
* *
27389036 TCAACTTTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
129 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * * * * * * *
27389101 TTCAAATTTGACCAAATAATGTTTCAAGCGATTTTTTTCGTAAAACACAAATAAGTAATTAGTTA
194 TTCAAATTCGACCAAATAACGATTCAAGTGATTTATTTAGTAAAACGCAAATAACTAATTAGTTA
*
27389166 AACTATGTTTAAAAAACAAAAAAGATTACATGAAATAT
259 AACGATGTTT-------AAAAAA-ATTACATGAAATAT
* * * * *
27389204 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGATCACCCATCCTACTACTGCTCTCGCCC
1 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * *
27389269 AAGCACACTTAACTGCGGAGTTTTGATGGGA-TCTAGTGCATTAGTCCTGGTATAATCTAACTCG
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATTC-GGTGCATTAGTGCTGGTATGATCTAAC-CG
* *
27389333 TCAACTCTTGCGCAATCTATTTATATAAAAGCTACCCCTTATTGCACTTG
129 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTG
27389383 TGCTGTAACA
Statistics
Matches: 1390, Mismatches: 209, Indels: 68
0.83 0.13 0.04
Matches are distributed among these distances:
289 316 0.23
290 429 0.31
291 404 0.29
292 65 0.05
293 1 0.00
296 3 0.00
297 171 0.12
298 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (288 bp):
AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
AAGCACGCTTAACTGCGGAGTTCTGATGGGATTCGGTGCATTAGTGCTGGTATGATCTAACCGTC
AACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAATT
CAAATTCGACCAAATAACGATTCAAGTGATTTATTTAGTAAAACGCAAATAACTAATTAGTTAAA
CGATGTTTAAAAAAATTACATGAAATAT
Found at i:27389067 original size:870 final size:872
Alignment explanation
Indices: 27387456--27389385 Score: 2531
Period size: 870 Copynumber: 2.2 Consensus size: 872
27387446 AGGGTGTTAC
* * * * * *
27387456 AAAATGGGACGGGTGCAACATGAGGACTTCCCAGGAGGTCACCCATCCTAGCACTACTCTCGCTC
1 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
* * * * **
27387521 GAGCACTA-TTAATTGCAGAGTTCTGATGGGATCCAATGCATTATTGTTGGTATGATCGCACACC
66 AAGCAC-ACTTAATTGCGGAGTTCTGATGGGATCCAGTGCATTAGTACTGGTATGATCGCAC-CC
* *
27387585 -TCAACCCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGA
129 GTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGTGCCTCGAATTTGA
* * * *
27387649 ATTCAAATTCTACCAAATAACATTTCAAGTGATTTATTTCATAAAACGCAAATAACTAATTAGTT
194 ATTCAAATTCGACCAAATAACATTTCAAGTAATTTATTTCATAAAACGCAAATAAATAATTACTT
* *
27387714 AAACAATGTTTAAAAAAATTGTATATGAAATATAAAATGGAAGGGGTGCAACACGAGGACTTCCC
259 AAACAATGTTTAAAAAAAATGTACATGAAATATAAAATGGAAGGGGTGCAACACGAGGACTTCCC
* * * * *
27387779 AAGGAGTTACCCATCCTAGTACTACTCTCACCCCAACATGATTTACTATGAAGTTCTGAAGGGAT
324 AAGGAGTCACCCATCCTAGTACAACTCTCACCCCAACACGATTAACTACGAAGTTCTGAAGGGAT
* * *
27387844 CTGGTATATTAGTGCTGGTATGATCGCAACCTTCAACTCTTGAGCAATCTATTTATATAAAGACT
389 CTGGTACATTAGTGCTGGTATGACCGCAACCTTCAACTCTTGAGCAATATATTTATATAAAGACT
* * * *
27387909 TCCCCTTATCGCACTTGCGCCTCAAATTTGAAAGCAAATTCGACCAAAATAACGATTCATGTGAT
454 ACCCCTTATCGCACTTGCGCCTCAAATTTGAAAGCAAATTCAACCAAAATAACGATTCAAGTCAT
* * * * * * *
27387974 TTCTTTAGTAAAACGCATATAACTACTTAGTTAAATGATGTTTAAAAAAATTATATGAAATATAA
519 TTATTTAGTAAAACGCAAATAACAAATTAGTTAAACGATGTTAAAAAAAATTACATGAAATATAA
* * * * *
27388039 AATAGGAGTGGTGCAACTCGAGGACTTACCAAAAGGTCACCCATCCTAGTACTACTCTAGCCCAA
584 AATAGGAGGGGTGCAACACGAGGAATTACCAAAAGATCACCCATCCCAGTACTACTCTAGCCCAA
* * * * *
27388104 GCACGCTTAACTGCGGAGTTTTGATGGTATTCGGTGCATTAGTGCTGGTATAATCTAACCAGTCA
649 GCACGCTTAACTGCAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATAATCTAACCAGTCA
* *
27388169 ACTCCCGCGCACTCTATTCATATAAAGGCTACCCCTTATCACACTTGCGCCTCATATTTGAATTC
714 ACTCCCGCGCAATCTATTCATATAAAGGCTACCCCTTATCACACTTGCGCCTCAAATTTGAATTC
* * *
27388234 AAATTTAACCAAATAACGTTTGAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAAC
779 AAATTTAACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAATAACTAATTAGTTAAAC
27388299 GATGTTT-AAAAAA-ATTACATGAAATAT
844 GATGTTTAAAAAAAGATTACATGAAATAT
* * * * * *
27388326 AGAATAGGAGGGGTGCAACCCGAGGACTTCCCAAGAGGTCACCCATTCGAGTACAACTCTAGCCC
1 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
* * * *
27388391 AAGCACGCTTAATTGCGGAGTTCTGATGGGATCCGGTACATTAGTACTGGTATGATCGCACCCGC
66 AAGCACACTTAATTGCGGAGTTCTGATGGGATCCAGTGCATTAGTACTGGTATGATCGCACCCGT
*
27388456 CAACTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGTGCCTCGAATTTGAAT
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGTGCCTCGAATTTGAAT
* *
27388521 TCAAATTCGACTAAATAACGTTTCAAGTAATTTATTTCATAAAACGCAAATAAATAATTACTTAA
196 TCAAATTCGACCAAATAACATTTCAAGTAATTTATTTCATAAAACGCAAATAAATAATTACTTAA
* *
27388586 ACTATGTTTAAAAATAAAT-TACATGAAATATAAAATAGG-A-GGGTGCAACATGAGGACTTCCC
261 ACAATGTTTAAAAA-AAATGTACATGAAATATAAAAT-GGAAGGGGTGCAACACGAGGACTTCCC
* * * * *
27388648 AA-GAGGTCACCCATCTTAGTACAACTCT-AGCCCAAGCACGCTTAACTACGGAGTTCTGATGGG
324 AAGGA-GTCACCCATCCTAGTACAACTCTCACCCCAA-CACGATTAACTACGAAGTTCTGAAGGG
* * * * * *
27388711 ATC-GAGTGCATTCGTGCTTGTATGACCGC-ACCTGTCAGCTCTTGCGCATTATATTTATATAAA
387 ATCTG-GTACATTAGTGCTGGTATGACCGCAACCT-TCAACTCTTGAGCAATATATTTATATAAA
* * * *
27388774 GGCTACCCCTTATTGCACTTGCGCCTCGAATTTGAAATCAAATTCAACC-AAATAAC-ATTTCAA
450 GACTACCCCTTATCGCACTTGCGCCTCAAATTTGAAAGCAAATTCAACCAAAATAACGA-TTCAA
*
27388837 GTCATTTATTTCGTAAAACGCAAATAACAAATTAGTTAAACGATGCTTAAAAATAAATTACATGA
514 GTCATTTATTTAGTAAAACGCAAATAACAAATTAGTTAAACGATG-TTAAAAA-AAATTACATGA
* *
27388902 AATATAAAATAGGAGGGGTGCAACACGAGGAATTCCCAAGAGATCACCCATCCCAGTACTACTCT
577 AATATAAAATAGGAGGGGTGCAACACGAGGAATTACCAAAAGATCACCCATCCCAGTACTACTCT
* * * * *
27388967 TGCCTAAGCACGCTTAACTGTAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATCAT-T-G
642 AGCCCAAGCACGCTTAACTGCAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATAATCTAA
*** * * *
27389030 CACACGTCAACTTTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGCGCCTCAAA
707 C-CA-GTCAACTCCCGCGCAATCTATTCATATAAAGGCTACCCCTTATCACACTTGCGCCTCAAA
* * * *
27389095 TTTGAATTCAAATTTGACCAAATAATGTTTCAAGCGATTTTTTTCGTAAAACACAAATAAGTAAT
770 TTTGAATTCAAATTTAACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAATAACTAAT
*
27389160 TAGTTAAACTATGTTTAAAAAACAAAAAAGATTACATGAAATAT
835 TAGTTAAACGATGTTT-----A-AAAAAAGATTACATGAAATAT
* * * *
27389204 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGATCACCCATCCTACTACTGCTCTCGCCC
1 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
* * * * * ** *
27389269 AAGCACACTTAACTGCGGAGTTTTGATGGGATCTAGTGCATTAGTCCTGGTATAATCTAACTCGT
66 AAGCACACTTAATTGCGGAGTTCTGATGGGATCCAGTGCATTAGTACTGGTATGATCGCACCCGT
* *
27389334 CAACTCTTGCGCAATCTATTTATATAAAAGCTACCCCTTATTGCACTTGTGC
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGTGC
27389386 TGTAACACCC
Statistics
Matches: 911, Mismatches: 128, Indels: 34
0.85 0.12 0.03
Matches are distributed among these distances:
867 1 0.00
868 63 0.07
869 165 0.18
870 500 0.55
871 5 0.01
877 6 0.01
878 171 0.19
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (872 bp):
AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTCGCCC
AAGCACACTTAATTGCGGAGTTCTGATGGGATCCAGTGCATTAGTACTGGTATGATCGCACCCGT
CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGTGCCTCGAATTTGAAT
TCAAATTCGACCAAATAACATTTCAAGTAATTTATTTCATAAAACGCAAATAAATAATTACTTAA
ACAATGTTTAAAAAAAATGTACATGAAATATAAAATGGAAGGGGTGCAACACGAGGACTTCCCAA
GGAGTCACCCATCCTAGTACAACTCTCACCCCAACACGATTAACTACGAAGTTCTGAAGGGATCT
GGTACATTAGTGCTGGTATGACCGCAACCTTCAACTCTTGAGCAATATATTTATATAAAGACTAC
CCCTTATCGCACTTGCGCCTCAAATTTGAAAGCAAATTCAACCAAAATAACGATTCAAGTCATTT
ATTTAGTAAAACGCAAATAACAAATTAGTTAAACGATGTTAAAAAAAATTACATGAAATATAAAA
TAGGAGGGGTGCAACACGAGGAATTACCAAAAGATCACCCATCCCAGTACTACTCTAGCCCAAGC
ACGCTTAACTGCAGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATAATCTAACCAGTCAAC
TCCCGCGCAATCTATTCATATAAAGGCTACCCCTTATCACACTTGCGCCTCAAATTTGAATTCAA
ATTTAACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAATAACTAATTAGTTAAACGA
TGTTTAAAAAAAGATTACATGAAATAT
Found at i:27389169 original size:581 final size:578
Alignment explanation
Indices: 27387456--27389382 Score: 2397
Period size: 581 Copynumber: 3.3 Consensus size: 578
27387446 AGGGTGTTAC
* * * * *
27387456 AAAATGGGACGGGTGCAACATGAGGACTTCCCAGGAGGTCACCCATCCTAGCACTACTCTCGCTC
1 AAAATAGGACGGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* ** * * * * * * * *
27387521 GAGCACTATTAATTGCAGAGTTCTGATGGGATCCAATGCATTATTGTTGGTATGATCGCACAC-C
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCGAGTGCATTAGTGCTGGTATAATCGCAC-CTG
*
27387585 TCAACCCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAA
* *
27387650 TTCAAATTCTACCAAATAACATTTCAAGTGATTTATTTCATAAAACGCAAATAACTAATTAGTTA
195 TTCAAATTCAACCAAATAACATTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
* * *
27387715 AACAATGTTTAAAAAAATTGTATATGAAATATAAAAT-GGAAGGGGTGCAACACGAGGACTTCCC
260 AACGATG-TTAAAAAAAAT-TACATGAAATATAAAATAGG-AGGGGTGCAACACGAGGACTTCCC
* * * * * * *
27387779 AAG-GAGTTACCCATCCTAGTACTACTCTCACCCCAA-CATGATTTACTATGAAGTTCTGAA-GG
322 AAGAGA-TCACCCATCCCAGTACTACTCT-AGCCCAAGCACGCTTAACTGTG-AGTTCT-AATGG
* * * *
27387841 GATCTGGTATATTAGTGCTGGTATGATCGCA-ACCTTCAACTCTTGAGCAATCTATTTATATAAA
383 GATCCGGTACATTAGTGCTGGTATGATCGCACA-CGTCAACTCTTGCGCAATCTATTTATATAAA
* * ** * *
27387905 GACTTCCCCTTATCGCACTTGCGCCTCAAATTTGAAAGCAAATTCGACCAAAATAACGATTCATG
447 GGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAATTCAAATTCGACC-AAATAACGTTTCAAG
* * * * * *
27387970 TGATTTCTTTAGTAAAACGCATATAACTACTTAGTTAAA-TGATGTTT-AAAAAAATTATATGAA
511 TGATTTATTTCGTAAAACGCAAATAAATAATTAGTTAAACT-ATGTTTAAAAAAAATTACATGAA
27388033 ATAT
575 ATAT
* *
27388037 AAAATAGGA-GTGGTGCAAC-TCGAGGACTTACCAAAAGGTCACCCATCCTAGTACTACTCTAGC
1 AAAATAGGACG-GGTGCAACAT-GAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGC
* * **
27388100 CCAAGCACGCTTAACTGCGGAGTTTTGATGGTATTCG-GTGCATTAGTGCTGGTATAATCTAACC
64 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGA-TCGAGTGCATTAGTGCTGGTATAATCGCACC
* ** * * *
27388164 AGTCAACTCCCGCGCACTCTATTCATATAAAGGCTACCCCTTATCACACTTGCGCCTC-ATATTT
128 TGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGA-ATTT
* * *
27388228 GAATTCAAATTTAACCAAATAACGTTTGAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAG
192 GAATTCAAATTCAACCAAATAACATTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAG
* * *
27388293 TTAAACGATGTTTAAAAAAATTACATGAAATATAGAATAGGAGGGGTGCAACCCGAGGACTTCCC
257 TTAAACGATGTTAAAAAAAATTACATGAAATATAAAATAGGAGGGGTGCAACACGAGGACTTCCC
* * * * * * *
27388358 AAGAGGTCACCCATTCGAGTACAACTCTAGCCCAAGCACGCTTAATTGCGGAGTTCTGATGGGAT
322 AAGAGATCACCCATCCCAGTACTACTCTAGCCCAAGCACGCTTAACTG-TGAGTTCTAATGGGAT
* * * *
27388423 CCGGTACATTAGTACTGGTATGATCGCACCCGCCAACTCTTGCGCATTCTATTTATATAAAGGCT
386 CCGGTACATTAGTGCTGGTATGATCGCACACGTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* * * *
27388488 ACCCCTTATCGCACTTGTGCCTCGAATTTGAATTCAAATTCGACTAAATAACGTTTCAAGTAATT
451 ACCCCTTATCGCACTTGCGCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATT
* *
27388553 TATTTCATAAAACGCAAATAAATAATTACTTAAACTATGTTTAAAAATAAATTACATGAAATAT
516 TATTTCGTAAAACGCAAATAAATAATTAGTTAAACTATGTTTAAAAA-AAATTACATGAAATAT
* *
27388617 AAAATAGGA-GGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATCTTAGTACAACTCTAGCCC
1 AAAATAGGACGGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * *
27388681 AAGCACGCTTAACTACGGAGTTCTGATGGGATCGAGTGCATTCGTGCTTGTATGACCGCACCTGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCGAGTGCATTAGTGCTGGTATAATCGCACCTGT
* * * * *
27388746 CAGCTCTTGCGCATTATATTTATATAAAGGCTACCCCTTATTGCACTTGCGCCTCGAATTTGAAA
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAAT
* *
27388811 TCAAATTCAACCAAATAACATTTCAAGTCATTTATTTCGTAAAACGCAAATAACAAATTAGTTAA
196 TCAAATTCAACCAAATAACATTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
*
27388876 ACGATGCTTAAAAATAAATTACATGAAATATAAAATAGGAGGGGTGCAACACGAGGAATTCCCAA
261 ACGATG-TTAAAAA-AAATTACATGAAATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAA
* *
27388941 GAGATCACCCATCCCAGTACTACTCTTGCCTAAGCACGCTTAACTGTAGAGTTCTAATGGGATCC
324 GAGATCACCCATCCCAGTACTACTCTAGCCCAAGCACGCTTAACTGT-GAGTTCTAATGGGATCC
* * * * *
27389006 GGTGCATTAGTGCTGGTATCATTGCACACGTCAACTTTTGCGCAATCTATTTATGTAAAGGCTAC
388 GGTACATTAGTGCTGGTATGATCGCACACGTCAACTCTTGCGCAATCTATTTATATAAAGGCTAC
* * * *
27389071 CCCTTATCGCACTTGCGCCTCAAATTTGAATTCAAATTTGACCAAATAATGTTTCAAGCGATTTT
453 CCCTTATCGCACTTGCGCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTA
* *
27389136 TTTCGTAAAACACAAATAAGTAATTAGTTAAACTATGTTTAAAAAACAAAAAAGATTACATGAAA
518 TTTCGTAAAACGCAAATAAATAATTAGTTAAACTATGTTT-----A-AAAAAA-ATTACATGAAA
27389201 TAT
576 TAT
* * * * * * *
27389204 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGATCACCCATCCTACTACTGCTCTCGCCC
1 AAAATAGGACGGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * * *
27389269 AAGCACACTTAACTGCGGAGTTTTGATGGGATCTAGTGCATTAGTCCTGGTATAATC-TAACTCG
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCGAGTGCATTAGTGCTGGTATAATCGCACCT-G
* *
27389333 TCAACTCTTGCGCAATCTATTTATATAAAAGCTACCCCTTATTGCACTTG
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTG
27389383 TGCTGTAACA
Statistics
Matches: 1154, Mismatches: 163, Indels: 51
0.84 0.12 0.04
Matches are distributed among these distances:
578 60 0.05
579 395 0.34
580 50 0.04
581 472 0.41
582 2 0.00
586 3 0.00
587 29 0.03
588 143 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (578 bp):
AAAATAGGACGGGTGCAACATGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
AAGCACGCTTAACTGCGGAGTTCTGATGGGATCGAGTGCATTAGTGCTGGTATAATCGCACCTGT
CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAAT
TCAAATTCAACCAAATAACATTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
ACGATGTTAAAAAAAATTACATGAAATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGA
GATCACCCATCCCAGTACTACTCTAGCCCAAGCACGCTTAACTGTGAGTTCTAATGGGATCCGGT
ACATTAGTGCTGGTATGATCGCACACGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCC
TTATCGCACTTGCGCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
CGTAAAACGCAAATAAATAATTAGTTAAACTATGTTTAAAAAAAATTACATGAAATAT
Found at i:27390807 original size:40 final size:40
Alignment explanation
Indices: 27390762--27390888 Score: 191
Period size: 40 Copynumber: 3.2 Consensus size: 40
27390752 CGGAATACAA
*
27390762 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
27390802 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
27390842 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
27390882 CCGGATA
1 CCGGATA
27390889 AAGTCACTAG
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:27390902 original size:80 final size:80
Alignment explanation
Indices: 27390762--27390929 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 80
27390752 CGGAATACAA
* * *
27390762 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
* *
27390827 CCTTCGGGTATTAGC
66 CCTTCAGGTATTAAC
** *
27390842 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
27390905 TGCCTTCAGGTCTTAAC
64 TGCCTTCAGGTATTAAC
27390922 CCGGATAT
1 CCGGATAT
27390930 CATTCAATTG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 74 0.96
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCAGGTATTAAC
Found at i:27390909 original size:40 final size:39
Alignment explanation
Indices: 27390762--27390929 Score: 180
Period size: 40 Copynumber: 4.2 Consensus size: 39
27390752 CGGAATACAA
* *
27390762 CCGGATATAACCAC-ACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTA-GCAC-AATGCCTTCGGGTATTAGC
* *
27390802 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTATTAGC
*
27390842 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTATTAGC
* * *
27390882 CCGGATA-AAGTC-ACTAGCACAATTGCCTTCAGGTCTTAAC
1 CCGGATATAA--CAACTAGCACAA-TGCCTTCGGGTATTAGC
27390922 CCGGATAT
1 CCGGATAT
27390930 CATTCAATTG
Statistics
Matches: 112, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 4 0.04
40 107 0.96
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTATTAGC
Found at i:27393972 original size:295 final size:290
Alignment explanation
Indices: 27392589--27397938 Score: 6194
Period size: 295 Copynumber: 18.4 Consensus size: 290
27392579 TGTCACATGT
* * *
27392589 GCCTCAAATTTGAAATCAAATTC-AGCAGAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAA
1 GCCTCAAATTTGAATTCAAATTCGACCA-AATAACGTTTCAAGCGATTTATTTCGTAAAACGCAA
* * *
27392653 ATAACTAATTAGTTAAACGATGT--T-AAAAAATTACATAAAATAGAAAATGGGAGGGGTGCAAC
65 ATAACTAATTAGTTAAACAATGTAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAAC
* * * ** *
27392715 ACGAGGAATTCCCAGGAGGTCACCCATCCTAGTACTACTCTCAGCCAAGTACATTTAACTGCAGA
130 ACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGA
* * *
27392780 GTTCTAATGGGATCCGATGCATTAGTGCTAGTATCATCGCACCCGTCAACTCTTGCGCAATCTAT
195 GTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTAT
*
27392845 TTATGTAAAGGCTACCCCTTATCGCACTTGC
260 TTATATAAAGGCTACCCCTTATCGCACTTGC
* * * * * * *
27392876 ACCTCAAATTTGAATTCAAAATCGACCAAGTAACATTTCAAGCGATTTAATTCATAAAACACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * *
27392941 TAACTAATTAGTTAAACAATGT-TTAAAAAAATTACATGAAATATAAAATGGGAAGGGTGCAACC
66 TAACTAATTAGTTAAACAATGTAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACA
* * * * * *
27393005 CAAGGACTTCCTAGGAAGTCACCCATCCGAGTACAACTCT-AGCCCAAGAACGCTTAACTGCGGA
131 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAACTGCGGA
* * * * * * *
27393069 GTTCTGACGGGATCCGGTACATTAGTACTGGTATGATCGCACCTGTCAACTCTTGCACATTCTAT
195 GTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTAT
***
27393134 TTATATAAAGGCTATATCTTATCGCACTTGC
260 TTATATAAAGGCTACCCCTTATCGCACTTGC
* * * ** *
27393165 GCCTCGAATTTGAATTCAAATTTGACTAAATAACGTTTCAAGTAATTTATTTCGTAAAATGCAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * * * * *
27393230 TAACTAATTACTTAAACTATGTTTAA-AAATAAATTACATGAAATATAAAATAGGAGGGCTTCAA
66 TAACTAATTAGTTAAACAATG--TAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAA
* * * * *** *
27393294 CACGAGGACTTCCCAAGAAGTCACCCGTCCTAGTACAACTCT-AGCTGGAGCACGCTTAACTACG
129 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAACTGCG
* * * * * ** * *
27393358 GAGTTCTGATGGGATCGGGTGCATTAGTGCTTGTATGATTGC-CCCTGTCAGCTCTTGTACATTA
193 GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCC-GTCAACTCTTGCGCAATC
* * *
27393422 TATTTGTATAAAGGCAAACCCTTATCGCACTTGC
257 TATTTATATAAAGGCTACCCCTTATCGCACTTGC
** * *
27393456 GCCTTGAATTTGAATTCAAATTCAACCGAATAACGTTTCAA-CTGATTTATTTCGTAAAACGCAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGC-GATTTATTTCGTAAAACGCAA
* * *
27393520 ATAACTAATTAGTTAAACAACGCTTAA-AAATAAAGTACATGAAATATAAAATGGGAGGGGTGCA
65 ATAACTAATTAGTTAAACAATG--TAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCA
* * * * * ** * * *
27393584 ACACGAGGAATTCCCAAGAGATCACCCGTCCCAGTACTACTCT-TGCTAAGAACACTTAACTGTC
128 ACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTG-C
* *
27393648 -GTGTTC-GAATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACACGTCAACTCTTGCGCAAT
192 GGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAAT
* * **
27393711 CTATTTATGTAAAGGCTACCCCTTTTCGCACTTTT
256 CTATTTATATAAAGGCTACCCCTTATCGCACTTGC
* * **
27393746 GCCTCAAATTTGAATTCAAATTTGACCAAATAACGTTTCAAGCGATTTTTTTCGTAAAACAAAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* *
27393811 TAACTAATTAGTTAAACAATGTCCAAAAAACAAAAAAATTACACGAAATATAAAATGGGAGGGGT
66 TAACTAATTAGTTAAACAATGT------AATAAAAAAATTACATGAAATATAAAATGGGAGGGGT
* * * * *
27393876 GTAACACGAGGACTTCCCAAGAGATCA-CCATCCTAGTACAACTCTCACCCAAGCACGTTTAACT
125 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACT
* * * ** *
27393940 GCAGAGTTTTGATGGGATCCGGTGCATTAGTGCTGGTATAATCTAACTCGTCAACTCTTGCGCAA
190 GCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAA
* * *
27394005 TCTATTTATATAAAAGCTACCCCTTATTGCACTTGT
255 TCTATTTATATAAAGGCTACCCCTTATCGCACTTGC
* * * *
27394041 GCCTCAAATTTGAAATCAAATTCAACCGAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * * * *
27394106 TAACTAATTAGTTAAACGATGT--TAAGAAAATTACATAAAATATAATATGGGAGGGGTGCAACG
66 TAACTAATTAGTTAAACAATGTAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACA
* ** *
27394169 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCAGCCAAGCACATTTAACTGCAGAG
131 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAG
* * * *
27394234 TTCTAATGGGATCCGATTCATTAGTGCTAGTATCATCGCACCCGTCAACTCTTGCGCAATCTATT
196 TTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTATT
* * *
27394299 TATGTAAAGGCTACCCCTTATCACGCTTGC
261 TATATAAAGGCTACCCCTTATCGCACTTGC
* * * *
27394329 GCCTCAAATTTGAATTCAAATTCGACCAAGTAACGTTTCAAACGATTTATTTCATAAAACACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* *
27394394 TAACTAATTAGTTAAACAATGTTTAAAAGTAAAACAATTACATGAAATATAAAATGGGAGCGGTG
66 TAACTAATTAGTTAAACAATG--T--AA-TAAAAAAATTACATGAAATATAAAATGGGAGGGGTG
* * * * *
27394459 CAACACGAGGGCTTCCCAGGAGATCACCCATCGTAGTACTGCTCTCACCCAAGCACGCTTAACTA
126 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTG
* * * * * * * * **
27394524 CGGGGTTTTGATGGGATCTGGTGCATTTGGGTTAGTATAATCTAACCCGTCAACTCTTGCGCAAT
191 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAAT
* *
27394589 CTATTTATATAAAGGCTACCCCTTATCACACTTGT
256 CTATTTATATAAAGGCTACCCCTTATCGCACTTGC
* * * * * *
27394624 GCCTCGAATTTGAATTCAAATTTGATCAAATAACGTTTCAAGTGATTTATTTTGAAAAACGCAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
**
27394689 TAACTAATTAGTTAAACAATGT--TAAAAAAATTACATGAAATATAAAATAAGAGGGGTGCAACA
66 TAACTAATTAGTTAAACAATGTAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACA
* * * * * *
27394752 CGAGGAATTCCAAGGAGGTCACCCATCCTAATACTACTCTCAGCCAAGCACGCTTACCTTCGGAG
131 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAG
* * * * *
27394817 TTCTTATGGGATCCGGTTCATTAGTGCTGGTAGCATCGCTCCCATCAACTCTTGCGCAATCTATT
196 TTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTATT
* *
27394882 TATGTAAAAGCTACCCCTTATCGCACTTGC
261 TATATAAAGGCTACCCCTTATCGCACTTGC
27394912 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGT-AAACGCAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* *
27394976 TAACTAATTAGTTAAACAATGTTTAAAACACAAAAAAATTACATGAAATATATAATGGGAGGGGT
66 TAACTAATTAGTTAAACAATG--T---A-ATAAAAAAATTACATGAAATATAAAATGGGAGGGGT
* * *
27395041 GCAACACGAAGACTTCCCATGAGGTCATCCATCCTAGTACTACTCT-AGCCCAAGCACGCTTAAC
125 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAAC
* * * ** * *
27395105 TGCAGAGATT-TGATGGGATTCGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTCGTGC
189 TGCGGAG-TTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGC
* *
27395169 ACTCTATTTATATAAAGGCTACCCCTTATCGCATTTGC
253 AATCTATTTATATAAAGGCTACCCCTTATCGCACTTGC
* ** * * * * * *
27395207 GCCTCTAATAGGAATTCAAATTTGACCAAATAACATTTCAAGTGATTTATTTTGTAAAATGAAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * *
27395272 TAACTAATTAGTTAAACGATGT-TTAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAGCA
66 TAACTAATTAGTTAAACAATGTAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACA
* * * **
27395336 CGAGGACTTCCCAGGAGGTCACCCATCCGAGTACAACTCT-AGCCCAAGCATGCTTAACTTTGGA
131 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAACTGCGGA
* * * * * ** *
27395400 GTTCTGGTGGGATCCGGTACATTAGTACTGGTATGATCGCACACGTCAACTCTCACGCATTCTAT
195 GTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTAT
*
27395465 TCATATAAAGGCTACCCCTTATCGCACTTGC
260 TTATATAAAGGCTACCCCTTATCGCACTTGC
* * ** *
27395496 GCCTCGAATTTGAATTCAAATTCGACTAAATAACGTTTCAAGTAATTTATTTCGTAAAACACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * * * *
27395561 TAAGTAATTACTTAAACTATGTTTAA-AAATAAATTACATGAAATATAAAATAGGAGGGGTGCAA
66 TAACTAATTAGTTAAACAATG--TAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAA
* * * * * * *
27395625 CATGAGAACTTCCCAGGAGGTCACACATCCTAGTACAACTGT-AGCCCAGGCACGCTTAACTACG
129 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAACTGCG
* * * * ** * ** * *
27395689 GGGTTCTGATGGGTTCGGGTGCAATAGTGCTTATATGATCGCACCTATCAACTCTTGCGCATTAT
193 GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCT
*
27395754 ATTTATATAAAGGCTATCCCTTATCGCACTTGC
258 ATTTATATAAAGGCTACCCCTTATCGCACTTGC
* * * * * * *
27395787 GCCTCGAATTTGAATTCAAATTCAACCAAATAATGTTTCAAGTGTTTTATTTTGTAAAACGTAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* *
27395852 TAACTAATTAGTTAAACGATGTTTAA-AAATAAATTACATGAAATATAAAATGGGAGGGGTGCAA
66 TAACTAATTAGTTAAACAATG--TAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAA
* * * * * * ** * * *
27395916 CACGAGGAATTCCCAAGAGATCACCCGTCCCAGTGCTACTCTTGCCTAAGCATGCTTAACTGTGG
129 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGG
* * *
27395981 AGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACACGTTAACTCTTGCGCAATC-A
194 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTA
* *
27396045 TTTATGTAAAGGCTACCCCTTTTCGCACTTGC
259 TTTATATAAAGGCTACCCCTTATCGCACTTGC
* * * * *
27396077 GCCTCAAATTTGAATTGAATTTCGACCAAATAACATTTCAAGTGATTT-TTTCGTAAAACACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * *
27396141 TAACTAATTAGTTAAACAATGTTTAAAAAACAAAAAAAAATACATGAAATATAAAACGGGAGGGG
66 TAACTAATTAGTTAAACAATG--T----AA-TAAAAAAATTACATGAAATATAAAATGGGAGGGG
* * * *
27396206 TGCAACACGAGGGCTTCCCAGGAGATCACCCATCCTAGTACTGCTCTCGCCCAAGCACGCTTAAC
124 TGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAAC
* * * * * ** *
27396271 TGCAGAGTTTTGATGGGATCTGGTGCATTAGTGCTAGTATAATCTAACTCGTCAACTCTTGCGCA
189 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCA
* *
27396336 ATCTATTTATATAAAAGCTACCCCTTATCGCACTTGT
254 ATCTATTTATATAAAGGCTACCCCTTATCGCACTTGC
* * * * * *
27396373 GCCTCGAATTTGAAATCACATTCAACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCTAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * *
27396438 TAACTAATTAGTTAAACGATGT--TAAAAAAATTACATAAAATATAAAATGAGA-GGGTGCAACA
66 TAACTAATTAGTTAAACAATGTAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACA
* * * **
27396500 CGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCTCTCAAGCACATTTAACTG-GAGA
131 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCG-GA
* * * * *
27396564 GTTCTAATGGGATCCGATGCATTAGAGCTAGTATCATCGCACCTGTCAACTCTTGCGCAATCTAT
195 GTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTAT
* *
27396629 TTATGTAAAGGCTACCCCTTCTCGCACTTGC
260 TTATATAAAGGCTACCCCTTATCGCACTTGC
* * * *
27396660 GCCTCAAATTTGAATTCAAATTCGACCAAGTAATGTTTCAAGCGATTTATTTCATAAAACACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* *
27396725 TAACTAATTAATTAAACAATGTTTAAAAATAAAAAAATTACATGAAATATAAAATGGGAGAGGTG
66 TAACTAATTAGTTAAACAATG--T---AATAAAAAAATTACATGAAATATAAAATGGGAGGGGTG
* * * *
27396790 CAACACGAGGACTTCCCAGGTGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTA
126 CAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTG
* * * * * **
27396855 TGGAGTTTTGATGGGATCTGGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCAAT
191 CGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAAT
* *
27396920 CTATTTATATAAAGGCTACCTCTTATCGCACTTGT
256 CTATTTATATAAAGGCTACCCCTTATCGCACTTGC
* * * * * *
27396955 GCCTCGAATTTGAATTCAAATTTGATCAAATAACGTTTCAAGTGATTTATTGCGAAAAACGCAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * * **
27397020 TAACTAATTAGTTAAACGATGTTA-AAAAAAATTACACGAAATATAAAATAAGA-GGGTGCAACA
66 TAACTAATTAGTTAAACAATGTAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACA
* * * * * * *
27397083 CGAGGACTTCCTAGGAGGTCACCCATACAAATACTACTCTCAGCCAAGCACGCTTACCTTCGGAG
131 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAG
* * * *
27397148 TTC-GAATGGGATCTGGTGCATTAGTTCTAGTAGCATCGCACCCGTCAACTCTTGCGCAATCTAT
196 TTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTAT
* * ** *
27397212 TTATGTAAAAGCTACCCCTTATCATACTTGT
260 TTATATAAAGGCTACCCCTTATCGCACTTGC
*
27397243 GCCTCAAATTTGAATTCAAATTCGACCAAATAACATTTCAAGCGATTTATTTCGT-AAACGCAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * * * *
27397307 TAACTAAATAGTTAAAAAATGTTTAAAACACAAAAAAATTACACGAAATATATAATGGGAGGGGT
66 TAACTAATTAGTTAAACAATG--T---A-ATAAAAAAATTACATGAAATATAAAATGGGAGGGGT
* * *
27397372 GCAACATGAGGACTTCCCAGGAGGCCACCCATCCTAGTACTACTCT-AGCCCAAGCATGCTTAAC
125 GCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAAC
* * * **
27397436 TGCGGAGTTTTGATGGGATTCGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCA
189 TGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCA
* *
27397501 ATCCATTTATGTAAAGGCTACCCCTTATCGCACTTGC
254 ATCTATTTATATAAAGGCTACCCCTTATCGCACTTGC
* * * * * *
27397538 GCCTCAAATTTAAATTCAAATTCGACCAAGTAACATTTCAAGCGATTTATTTCATAAATCACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * * *
27397603 TAACTAATTAGTTAAACAATGT-TTAAAAAAATTACATGAAATATAAAAGGGGAAGGGTGCAACC
66 TAACTAATTAGTTAAACAATGTAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACA
* * *
27397667 CGAGGACTTCCCAGGAGGTCACCCATCCGAGTACAACTCT-AGCCCAAGCACGCTTAACTGTGGA
131 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAACTGCGGA
* * * * * *
27397731 GTTCTGATGAGATCCGGTACATTAGTACTGGAATGATCGCACCCGTCAACTCTTGCGCATTCTAT
195 GTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTAT
27397796 TTATATAAAGGCTACCCCTTATCGCACTTGC
260 TTATATAAAGGCTACCCCTTATCGCACTTGC
* * ** * *
27397827 GCCTCAAATTTGAATTCAAATTTGACTAAATAACGTTTCAAGTAATTTATTTAGTAAAATGCAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
* * *
27397892 TAACTAATTACTTAAACTATGTTTAA-AAATAAATTACATGAAA-ATAA
66 TAACTAATTAGTTAAACAATG--TAATAAAAAAATTACATGAAATATAA
27397939 TAAGTAATTT
Statistics
Matches: 4302, Mismatches: 681, Indels: 157
0.84 0.13 0.03
Matches are distributed among these distances:
287 403 0.09
288 642 0.15
289 799 0.19
290 240 0.06
291 722 0.17
293 5 0.00
294 76 0.02
295 1253 0.29
296 128 0.03
297 34 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (290 bp):
GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACGCAAA
TAACTAATTAGTTAAACAATGTAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACA
CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCGGAG
TTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTATT
TATATAAAGGCTACCCCTTATCGCACTTGC
Found at i:27394506 original size:583 final size:583
Alignment explanation
Indices: 27392589--27397924 Score: 6793
Period size: 583 Copynumber: 9.2 Consensus size: 583
27392579 TGTCACATGT
* * * *
27392589 GCCTCAAATTTGAAATCAAATTC-AGCAGAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAA
1 GCCTCAAATTTGAATTCAAATTCGACCA-AATAACGTTTCAAGCGATTTATTTCGTAAAACACAA
* * *
27392653 ATAACTAATTAGTTAAACGATG--T-----T-AAAAAATTACATAAAATAGAAAATGGGAGGGGT
65 ATAACTAATTAGTTAAACAATGTTTAAAAATAAAAAAATTACATGAAATATAAAATGGGAGGGGT
* * * * **
27392710 GCAACACGAGGAATTCCCAGGAGGTCACCCATCCTAGTACTACTCTCAGCCAAGTACATTTAACT
130 GCAACACGAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACT
* * * * * **
27392775 GCAGAGTTCTAATGGGATCCGATGCATTAGTGCTAGTATCATCGCACCCGTCAACTCTTGCGCAA
195 GCGGAGTTTTGATGGGATCCGGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCAA
* * * *
27392840 TCTATTTATGTAAAGGCTACCCCTTATCGCACTTGCACCTCAAATTTGAATTCAAAATCGACCAA
260 TCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAA
* * * * * * *
27392905 GTAACATTTCAAGCGATTTAATTCATAAAACACAAATAACTAATTAGTTAAACAATGTTTAAAAA
325 ATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAA
* * * * *
27392970 AATTACATGAAATATAAAATGGGAAGGGTGCAACCCAAGGACTTCCTAGGAAGTCACCCATCCGA
390 AATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCGA
* * * * * *
27393035 GTACAACTCTAGCCCAAGAACGCTTAACTGCGGAGTTCTGACGGGATCCGGTACATTAGTACTGG
455 GTACTACTCTAG-CCAAGCACGCTTAACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGG
* * * * * ***
27393100 TATGATCGCACCTGTCAACTCTTGCACATTCTATTTATATAAAGGCTATATCTTATCGCACTTGC
519 TATCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGC
* * * ** **
27393165 GCCTCGAATTTGAATTCAAATTTGACTAAATAACGTTTCAAGTAATTTATTTCGTAAAATGCAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
* * * * *
27393230 TAACTAATTACTTAAACTATGTTTAAAAAT----AAATTACATGAAATATAAAATAGGAGGGCTT
66 TAACTAATTAGTTAAACAATGTTTAAAAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTG
* * * ***
27393291 CAACACGAGGACTTCCCAAGA-AGTCACCCGTCCTAGTACAACTCT-AGCTGGAGCACGCTTAAC
131 CAACACGAGGACTTCCCAGGAGA-TCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAAC
* * * * * ** * **
27393354 TACGGAGTTCTGATGGGATCGGGTGCATTAGTGCTTGTATGAT-TGCCCCTGTCAGCTCTTGTAC
194 TGCGGAGTTTTGATGGGATCCGGTGCATTAGTGCTAGTATAATCTAACCC-GTCAACTCTTGCGC
* * * * * * *
27393418 ATTATATTTGTATAAAGGCAAACCCTTATCGCACTTGCGCCTTGAATTTGAATTCAAATTCAACC
258 AATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACC
* * * * *
27393483 GAATAACGTTTCAACTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACAACGCTTAAA
323 AAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATG-TTTAA
* * * * *
27393548 AATAAAGTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGAATTCCCAAGAGATCACCCGT
387 AA-AAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * * * * * *
27393613 CCCAGTACTACTCTTGCTAAGAACACTTAACTGTC-GTGTTCGAATGGGATCCGGTGCATTAGTG
451 CCGAGTACTACTCTAGCCAAGCACGCTTAACTG-CGGAGTTCTAATGGGATCCGGTGCATTAGTG
* *
27393677 CTGGTATCATCGCACACGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTTTCGCAC
515 CTGGTATCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCAC
**
27393742 TTTT
580 TTGC
* * *
27393746 GCCTCAAATTTGAATTCAAATTTGACCAAATAACGTTTCAAGCGATTTTTTTCGTAAAACAAAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
** * *
27393811 TAACTAATTAGTTAAACAATGTCCAAAAAACAAAAAAATTACACGAAATATAAAATGGGAGGGGT
66 TAACTAATTAGTTAAACAATGT-TTAAAAATAAAAAAATTACATGAAATATAAAATGGGAGGGGT
* * * *
27393876 GTAACACGAGGACTTCCCAAGAGATCA-CCATCCTAGTACAACTCTCACCCAAGCACGTTTAACT
130 GCAACACGAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACT
* * *
27393940 GCAGAGTTTTGATGGGATCCGGTGCATTAGTGCTGGTATAATCTAACTCGTCAACTCTTGCGCAA
195 GCGGAGTTTTGATGGGATCCGGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCAA
* * * * * * *
27394005 TCTATTTATATAAAAGCTACCCCTTATTGCACTTGTGCCTCAAATTTGAAATCAAATTCAACCGA
260 TCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAA
* * *
27394070 ATAACGTTTCAAGCGATTTATTTCGTAAAACACAAATAACTAATTAGTTAAACGATG-TTAAGAA
325 ATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAA
* * * *
27394134 AATTACATAAAATATAATATGGGAGGGGTGCAACGCGAGGACTTCCCAGGAGGTCACCCATCCTA
390 AATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCGA
** * * * *
27394199 GTACTACTCTCAGCCAAGCACATTTAACTGCAGAGTTCTAATGGGATCCGATTCATTAGTGCTAG
455 GTACTACTCT-AGCCAAGCACGCTTAACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGG
* *
27394264 TATCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCACGCTTGC
519 TATCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGC
* * *
27394329 GCCTCAAATTTGAATTCAAATTCGACCAAGTAACGTTTCAAACGATTTATTTCATAAAACACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
* * *
27394394 TAACTAATTAGTTAAACAATGTTTAAAAGTAAAACAATTACATGAAATATAAAATGGGAGCGGTG
66 TAACTAATTAGTTAAACAATGTTTAAAAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTG
* * * *
27394459 CAACACGAGGGCTTCCCAGGAGATCACCCATCGTAGTACTGCTCTCACCCAAGCACGCTTAACTA
131 CAACACGAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTG
* * * * *
27394524 CGGGGTTTTGATGGGATCTGGTGCATTTGGGTTAGTATAATCTAACCCGTCAACTCTTGCGCAAT
196 CGGAGTTTTGATGGGATCCGGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCAAT
* * * *
27394589 CTATTTATATAAAGGCTACCCCTTATCACACTTGTGCCTCGAATTTGAATTCAAATTTGATCAAA
261 CTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAA
* * *
27394654 TAACGTTTCAAGTGATTTATTTTGAAAAACGCAAATAACTAATTAGTTAAACAATG-TTAAAAAA
326 TAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAA
** * * * *
27394718 ATTACATGAAATATAAAATAAGAGGGGTGCAACACGAGGAATTCCAAGGAGGTCACCCATCCTAA
391 ATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCGAG
* * * *
27394783 TACTACTCTCAGCCAAGCACGCTTACCTTCGGAGTTCTTATGGGATCCGGTTCATTAGTGCTGGT
456 TACTACTCT-AGCCAAGCACGCTTAACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGT
* * * *
27394848 AGCATCGCTCCCATCAACTCTTGCGCAATCTATTTATGTAAAAGCTACCCCTTATCGCACTTGC
520 ATCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGC
*
27394912 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGT-AAACGCAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
* *
27394976 TAACTAATTAGTTAAACAATGTTTAAAACACAAAAAAATTACATGAAATATATAATGGGAGGGGT
66 TAACTAATTAGTTAAACAATGTTTAAAA-ATAAAAAAATTACATGAAATATAAAATGGGAGGGGT
* * * *
27395041 GCAACACGAAGACTTCCCATGAGGTCATCCATCCTAGTACTACTCT-AGCCCAAGCACGCTTAAC
130 GCAACACGAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAAC
* * * * * *
27395105 TGCAGAGATTTGATGGGATTCGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTCGTGCA
194 TGCGGAGTTTTGATGGGATCCGGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCA
* * * ** *
27395170 CTCTATTTATATAAAGGCTACCCCTTATCGCATTTGCGCCTCTAATAGGAATTCAAATTTGACCA
259 ATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCA
* * * *
27395235 AATAACATTTCAAGTGATTTATTTTGTAAAATGAAAATAACTAATTAGTTAAACGATGTTTAAAA
324 AATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAA
*
27395300 AAATTACATGAAATATAAAATGGGAGGGGTGCAGCACGAGGACTTCCCAGGAGGTCACCCATCCG
389 AAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCG
* * ** ** * *
27395365 AGTACAACTCTAGCCCAAGCATGCTTAACTTTGGAGTTCTGGTGGGATCCGGTACATTAGTACTG
454 AGTACTACTCTAG-CCAAGCACGCTTAACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCTG
* * ** * * *
27395430 GTATGATCGCACACGTCAACTCTCACGCATTCTATTCATATAAAGGCTACCCCTTATCGCACTTG
518 GTATCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTG
27395495 C
583 C
* * **
27395496 GCCTCGAATTTGAATTCAAATTCGACTAAATAACGTTTCAAGTAATTTATTTCGTAAAACACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
* * * *
27395561 TAAGTAATTACTTAAACTATGTTTAAAAAT----AAATTACATGAAATATAAAATAGGAGGGGTG
66 TAACTAATTAGTTAAACAATGTTTAAAAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTG
* * * * * * *
27395622 CAACATGAGAACTTCCCAGGAGGTCACACATCCTAGTACAACTGT-AGCCCAGGCACGCTTAACT
131 CAACACGAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAACT
* * * * * * * ** **
27395686 ACGGGGTTCTGATGGGTTCGGGTGCAATAGTGCTTA-TATGATCGCACCTATCAACTCTTGCGCA
195 GCGGAGTTTTGATGGGATCCGGTGCATTAGTGC-TAGTATAATCTAACCCGTCAACTCTTGCGCA
* * * *
27395750 TTATATTTATATAAAGGCTATCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCAACCA
259 ATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCA
* * * *
27395815 AATAATGTTTCAAGTGTTTTATTTTGTAAAACGTAAATAACTAATTAGTTAAACGATGTTTAAAA
324 AATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATGTTT-AAA
* * * *
27395880 ATAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGAATTCCCAAGAGATCACCCGTC
388 A-AAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
* * * * *
27395945 CCAGTGCTACTCTTGCCTAAGCATGCTTAACTGTGGAGTTCTAATGGGATCCGGTGCATTAGTGC
452 CGAGTACTACTCTAGCC-AAGCACGCTTAACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGC
* * *
27396010 TGGTATCATCGCACACGTTAACTCTTGCGCAATC-ATTTATGTAAAGGCTACCCCTTTTCGCACT
516 TGGTATCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACT
27396074 TGC
581 TGC
* * * *
27396077 GCCTCAAATTTGAATTGAATTTCGACCAAATAACATTTCAAGTGATTT-TTTCGTAAAACACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
* * *
27396141 TAACTAATTAGTTAAACAATGTTTAAAAAACAAAAAAAAATACATGAAATATAAAACGGGAGGGG
66 TAACTAATTAGTTAAACAATGTTT-AAAAA-TAAAAAAATTACATGAAATATAAAATGGGAGGGG
* * *
27396206 TGCAACACGAGGGCTTCCCAGGAGATCACCCATCCTAGTACTGCTCTCGCCCAAGCACGCTTAAC
129 TGCAACACGAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAAC
* * *
27396271 TGCAGAGTTTTGATGGGATCTGGTGCATTAGTGCTAGTATAATCTAACTCGTCAACTCTTGCGCA
194 TGCGGAGTTTTGATGGGATCCGGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCA
* * * * *
27396336 ATCTATTTATATAAAAGCTACCCCTTATCGCACTTGTGCCTCGAATTTGAAATCACATTCAACCA
259 ATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCA
*
27396401 AATAACGTTTCAAGTGATTTATTTCGTAAAACGCTAATAACTAATTAGTTAAACGATG-TTAAAA
324 AATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAA
* * * *
27396465 AAATTACATAAAATATAAAATGAGA-GGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCT
389 AAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCG
** ** * *
27396529 AGTACTACTCTCTCTCAAGCACATTTAACTG-GAGAGTTCTAATGGGATCCGATGCATTAGAGCT
454 AGTACTACTCTAGC-CAAGCACGCTTAACTGCG-GAGTTCTAATGGGATCCGGTGCATTAGTGCT
* * *
27396593 AGTATCATCGCACCTGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTCTCGCACTT
517 GGTATCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTT
27396658 GC
582 GC
* * *
27396660 GCCTCAAATTTGAATTCAAATTCGACCAAGTAATGTTTCAAGCGATTTATTTCATAAAACACAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
* *
27396725 TAACTAATTAATTAAACAATGTTTAAAAATAAAAAAATTACATGAAATATAAAATGGGAGAGGTG
66 TAACTAATTAGTTAAACAATGTTTAAAAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTG
* * *
27396790 CAACACGAGGACTTCCCAGGTGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTA
131 CAACACGAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTG
* *
27396855 TGGAGTTTTGATGGGATCTGGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCAAT
196 CGGAGTTTTGATGGGATCCGGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCAAT
* * * *
27396920 CTATTTATATAAAGGCTACCTCTTATCGCACTTGTGCCTCGAATTTGAATTCAAATTTGATCAAA
261 CTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAA
* * *
27396985 TAACGTTTCAAGTGATTTATTGCGAAAAACGCAAATAACTAATTAGTTAAACGATGTTAAAAAAA
326 TAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAA
* ** * * * *
27397050 ATTACACGAAATATAAAATAAGA-GGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATACAAA
391 ATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCGAG
* * * * * *
27397114 TACTACTCTCAGCCAAGCACGCTTACCTTCGGAGTTCGAATGGGATCTGGTGCATTAGTTCTAGT
456 TACTACTCT-AGCCAAGCACGCTTAACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGT
* * ** *
27397179 AGCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAAGCTACCCCTTATCATACTTGT
520 ATCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGC
* *
27397243 GCCTCAAATTTGAATTCAAATTCGACCAAATAACATTTCAAGCGATTTATTTCGT-AAACGCAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
* * * * *
27397307 TAACTAAATAGTTAAAAAATGTTTAAAACACAAAAAAATTACACGAAATATATAATGGGAGGGGT
66 TAACTAATTAGTTAAACAATGTTTAAAA-ATAAAAAAATTACATGAAATATAAAATGGGAGGGGT
* ** *
27397372 GCAACATGAGGACTTCCCAGGAGGCCACCCATCCTAGTACTACTCT-AGCCCAAGCATGCTTAAC
130 GCAACACGAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCA-CCCAAGCACGCTTAAC
* *
27397436 TGCGGAGTTTTGATGGGATTCGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCA
194 TGCGGAGTTTTGATGGGATCCGGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCA
* * * *
27397501 ATCCATTTATGTAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTAAATTCAAATTCGACCA
259 ATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCA
* * * * * * *
27397566 AGTAACATTTCAAGCGATTTATTTCATAAATCACAAATAACTAATTAGTTAAACAATGTTTAAAA
324 AATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAA
* * *
27397631 AAATTACATGAAATATAAAAGGGGAAGGGTGCAACCCGAGGACTTCCCAGGAGGTCACCCATCCG
389 AAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCG
* * * * * *
27397696 AGTACAACTCTAGCCCAAGCACGCTTAACTGTGGAGTTCTGATGAGATCCGGTACATTAGTACTG
454 AGTACTACTCTAG-CCAAGCACGCTTAACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCTG
* * * *
27397761 GAATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTG
518 GTATCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTG
27397826 C
583 C
* * ** * **
27397827 GCCTCAAATTTGAATTCAAATTTGACTAAATAACGTTTCAAGTAATTTATTTAGTAAAATGCAAA
1 GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
* *
27397892 TAACTAATTACTTAAACTATGTTTAAAAATAAA
66 TAACTAATTAGTTAAACAATGTTTAAAAATAAA
27397925 TTACATGAAA
Statistics
Matches: 4125, Mismatches: 581, Indels: 100
0.86 0.12 0.02
Matches are distributed among these distances:
576 74 0.02
577 2 0.00
578 1 0.00
579 4 0.00
580 503 0.12
581 263 0.06
582 788 0.19
583 1477 0.36
584 464 0.11
585 254 0.06
586 294 0.07
587 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (583 bp):
GCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAAACACAAA
TAACTAATTAGTTAAACAATGTTTAAAAATAAAAAAATTACATGAAATATAAAATGGGAGGGGTG
CAACACGAGGACTTCCCAGGAGATCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTG
CGGAGTTTTGATGGGATCCGGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCAAT
CTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAA
TAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAA
ATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCGAG
TACTACTCTAGCCAAGCACGCTTAACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTA
TCATCGCACCCGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGC
Found at i:27399091 original size:50 final size:49
Alignment explanation
Indices: 27398975--27399104 Score: 165
Period size: 50 Copynumber: 2.6 Consensus size: 49
27398965 GTATAATGCT
* *
27398975 GATGCCATGTCTCAGACATGGTCTTACACTGCCTATCAAAATTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGCCTATCAAAATCGAGGCC
* * * *
27399024 GATGCCATGTCCTAGACATGGTCTTACACTAG-CTCTCACATATCCG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCCTATCA-AAAT-CGAGGCC
27399074 GATGCCATGTCCCAGACATGGTCTTACACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
27399105 ACACATCTCG
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
49 34 0.48
50 36 0.51
51 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGCCTATCAAAATCGAGGCC
Found at i:27399186 original size:46 final size:44
Alignment explanation
Indices: 27398975--27399240 Score: 167
Period size: 46 Copynumber: 5.6 Consensus size: 44
27398965 GTATAATGCT
* * ** *
27398975 GATGCCATGTCTCAGACATGGTCTTACACTGCCTATCAAAATTGAGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTA-C-ATCTCGA-GCC
* * * *
27399024 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCGTGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACT-G-GCT-ACATCT-CGAGCC
*
27399074 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTACATCTCG-AGCC
* * * * * *
27399120 GATGTAAGTTCCGGATATGTCTCACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCGA-GCC
* * *
27399166 AATGCATGTCCCAGACATGTCTTACACTAGCGCT-CGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACT-G-GCTACATCTCGA-GCC
27399212 GATGTCATGTCCCAGACATGTCTTACACT
1 GATG-CATGTCCCAGACATGTCTTACACT
27399241 AGCACACAAA
Statistics
Matches: 178, Mismatches: 28, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
44 11 0.06
45 12 0.07
46 56 0.31
47 26 0.15
48 3 0.02
49 29 0.16
50 36 0.20
51 4 0.02
52 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCGAGCC
Found at i:27401818 original size:290 final size:291
Alignment explanation
Indices: 27400649--27406696 Score: 6591
Period size: 290 Copynumber: 20.9 Consensus size: 291
27400639 CAGATCTGGC
* * * *
27400649 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCACATTCTATTTATATAAAGCCT-GCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* *
27400713 TTATCGTACTTGCGCCTCGAATTTGAATTCAAATTC-ATCCAAATAATGTTTCAAGTGATTTATT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGA-CCAAATAACGTTTCAAGTGATTTATT
* *
27400777 TCGTAAAACGCAAATAACTAATTAGTTAAACAATGTTTAAAAATAAATTACATGAAATATAAAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAAT
* **
27400842 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTAC-CTTAAGC
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT-CGCCCAAGC
* *
27400906 ACGCTTAACTACGGAGTTCTGATGGGAACCGGT
259 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * * *
27400939 ACATTAGTGCTGGTATGTTCGCACCCGTCAACTCCTGCGCACTCTATTTATATAAAGACTACCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* *
27401004 TTA-CTGTACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAATGTTTCAAGTGATTTATT
66 TTATC-GCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* * * * *
27401068 TCATAAAACGTAAATACCTAATTAGTTAAACTATGTTT--AAAAAAA-TACACGAAATATAAAAC
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAAT
* * *
27401130 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCAATCCCAGTGCTACTCTCGCCCAAGCA
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* *
27401195 CGCTTAGCTGCGGAGTTCTGATGGGATTCGGT
260 CGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * * ** * *
27401227 GCAATAGTGCTGGAATTATCGCACCCATCAGTTCTTGCGCATTCCATTTATATAAAGGGTACCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * * *
27401292 TTATCCCTCTTGCGCCTTGAATTTGAAGTCAAATTCGACGAAATAACATTTCAAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * * *
27401357 CGTAAAACACAAATAACTAATTAGTTAAACGATCTTTTAAGAAAACAATTACATGAATTATAAAA
131 CGTAAAACGCAAATAACTAATTAGTTAAACTAT-GTTTAA-AAAAAAATTACATGAAATATAAAA
*
27401422 TGGGAGGGGTGCAACACGAGGAGTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCAG-CCAAG
194 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC-GCCCAAG
* * *
27401486 CATGCTTACCTTCGGAGTTCTGATGGGATCCGGT
258 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * * * *
27401520 GTATTAGTGCTGGTA-GCATCGCACTCGTCAACTCTTGCACAATCTATTTATGTAAAAGCTACCC
1 GCATTAGTGCTGGTATG-ATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCC
* * * * *
27401584 CTTATCGCCCTTGGGCCTCAAATTTGAATTGAAATTCGACCAAATAACGTTTCAAGCGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* *
27401649 TCGT-AAACGCAAATAACTAATTAGTTAAACTTTGTTTAAAAAAAAATTACATGCAATATAAAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAAT
* * ** * *
27401713 GGGAAGGGTGCAACAC-AGGGACTTGCTGGGAGATCACCCATCCTAGCACTACTCTCGCCCAAGC
195 GGGAGGGGTGCAACACGA-GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * *
27401777 ACACTTAACTTCGGAGTTCTGATAGGATCCAGT
259 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
*
27401810 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACTCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
** * *
27401875 TTATCATACTTGCGCCTCGAAATTGAATTCAAATTTGACCAAATAACGTTTCAAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * * * **
27401940 TGAAAAACGCAAATAACTTATTACTTAAACTATGTTTAAAAATAAATTACATGAAATATAAAACA
131 CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAATG
* * * * * * * * ***
27402005 AGAGGGGTGCAACATGTGGATTTCCTAAGAGGTCACCCATCCTAATTCTACTCTATTCCAAGCAC
196 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *
27402070 ACTTAACTCCGGAGTTCTGATGGGATTCGGT
261 GCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * * * * * *
27402101 GCATTAGTGCTAGTA-GCATCGCACCTGTCAATTCTTGTGCAATCTCTTTATGTAAAAGCTACCC
1 GCATTAGTGCTGGTATG-ATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCC
* * *
27402165 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAACAGCGTTTCAAGAGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* * * *
27402230 TCATAAAATGCAAATAACTAATTAG-TAAACAATGTCTAAAAAACAAAAATAATTACATGAAATA
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGT-T---TAA-AAAAA-AATTACATGAAATA
* * * * * * *
27402294 TAAAATGAGAGGGGTGCAATACGAGGACTTGCCGGGAGATCACCCGTCCTAGTACTACTCTCACC
189 TAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * * ** *
27402359 CAACCACG-TATAAATTCAAAGTTCTGATGGGATTCGGT
254 CAAGCACGCT-TAACTGCGGAGTTCTGATGGGATCCGGT
* * * * * *
27402397 GCATTAGTGCTGGTATGATCACACCTGTCAACTCTTACGCAATCTACTTACA-AAGAGGCTACCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAA-AGGCTACCC
* * *
27402461 CTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGAACAAATAATGTTTCAAGTGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* * * *
27402526 TCGTAAAACGCTAACAAGTAATTAGTTAAATTATGTTT--AAAAAAATTACATGAAATATAAAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAAT
* * *
27402589 GGGATGGGTGCAACACGAGGACTTTCCAGGATGGTCACCCATCCTAGTACTACTCTCGCCCAGGC
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGA-GGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* *** *
27402654 ATGCTTAACTGCGGAGTTCTGATGGGATTTTGA
259 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * *
27402687 GCATTAGTACTGGTATGATCGCACCCATCAACTCTTGCGTATTCCATTTATATAAA-GCTACCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * * *
27402751 TTATCGCACTTGAGCCTCAAATTTGAATTCAAATTTGA-AAAAGCAACGTTTCAAGTGATATATT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAA-TAACGTTTCAAGTGATTTATT
* * * * *
27402815 TCATGAAACGCAAATAACTAATTTGTT-AAGTGATGTTTAAAAAAAAAATT-CAATGAAAAATAA
130 TCGTAAAACGCAAATAACTAATTAGTTAAACT-ATGTTT-AAAAAAAAATTAC-ATGAAATATAA
** * ** * * * * * * **
27402878 AATGGTTGGGGCGCAACACGAGGACTTCCTTGGATGTCA-CCATGCTAGTACCAGTTTTGCCCGT
192 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * * * *
27402942 GCACGGTTAACCGCAGAGTTTTGATGGGATCCAGT
257 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * *
27402977 GCATTAGTGATGGTATGGTCGCCCCCGTCAACTCTTGCTCATTCGT-TTTATATAAAGGCTACCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTC-TATTTATATAAAGGCTACCC
* * * *
27403041 CTTATCGCACTTGCACCTCGAATTTGAATTCAAATTCAACCAAATAATGCTTCAAGTGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* *
27403106 TCGTAAAACGCATATAACTAATTAGTTAAACGATGTTTAAAGAAAAAAATTACATGAAATATAAA
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTT-AA-AAAAAAATTACATGAAATATAAA
27403171 ATGGGAAGGGG-GCAACAC-ATGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
193 ATGGG-AGGGGTGCAACACGA-GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * ** *
27403234 AGCATGCTTGACTGCGGAAATCTGATGGGATCTGGT
256 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
** * * *
27403270 GCATTAGTGAGGGCATGATCGGACCCGTCAACTCTTGCGCATTCAATTTATATAAAGGCTACCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * * * *
27403335 ATATCACACTTACGCATCAAATTTGAATTCAAATTCGACCAAATCACGTTGCAAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* *
27403400 CGTTAAATGCAAATAACT-A--A--T----TA-G-TT---AAAAAATTACATGAAATATAAAATG
131 CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAATG
* ** * ** *
27403451 GGAGGGGTGCACCACGACTACTTCCCAGGCGGTCACCCATCCTAGTACTACTCTTTCCCAAGCAT
196 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* *
27403516 GCTTAACTGTGGAGTTTTGATGGGATCCGGT
261 GCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * * * * * * *
27403547 CCATTGGTGCTGGTATGATCACACCCATCAACTCTTACGCAATCTACTTATATAAGGGCCACCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * *
27403612 TTATCGCCCTTGTGCCTCGAATTTGAATTCAAATTCAACCAAAT-ACTGTTTCAACTGATTTATT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAAC-GTTTCAAGTGATTTATT
** * * * * * *
27403676 TAATAAAACGCAAATAACTAAGTAGGTAAA-TGTTTTTTAAAAAAAATTACATAAAATAT-AAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAAT
* * * *
27403739 GGGAGGGGTGCAACACGAGGACTTCTCAAGAGGTCACCCATCCTAGTACTACTCTCGCCTAGGCA
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* ** * *
27403804 CGTTTATTTG-GAGAGTTCTGTTTGGA-CCTGGT
260 CGCTTAACTGCG-GAGTTCTGATGGGATCC-GGT
** * * *
27403836 GCATTAGTGCTGGTAT-ATTTTCACTCGTCAACTCTTGCGCAATCTATTTATACAAAGGCTACCC
1 GCATTAGTGCTGGTATGA-TCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCC
* * * * *
27403900 CTTATCACACTTCCGCTTCGAATTTGAATTCAAATTCGACCAAATAAC-ATTCCAGTGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* * * * * *
27403964 TCGTAAAATGCTAATAAGTAATTAGCTCAATTATGTTT--AAAAAAATTACATGAAATATAAAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAA-
** * * *
27404027 TTAGAGGGGTGCAACACGAGGAATTTCCCA-GAGGTCACCCATCCTAGTACTACTATCGCCCAGG
194 TGGGAGGGGTGCAACACGAGG-ACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
*
27404091 CACGCTTAACTGCGGAGTTCTGATGGGAT-CAGT
258 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
** ** * * *
27404124 GCATTAGTGAGGGTATGATCATACCCGTCAACTGTTGCGCCTTCTATTTATATAAAAGCTACCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * ** *
27404189 ATATCACACTTGCACCTCGAATTTTAATTCAAATTAAACCAAATAACATTTCAAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * *
27404254 CGTTAAACGCAAATAAGTAATTAGTTAAACGATGTTTAAAAAAAAGTTACATGAAATATAAAATG
131 CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAATG
* * *
27404319 GGAGGGGTGCAACACGAGTACATCCCAGGAGGTCACCCATCCTTGTACTACTCTAC-CCCAAGCA
196 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT-CGCCCAAGCA
* * * * * * *
27404383 TGATTGATTGCGGGGTTCTGATAGGATTCGGT
260 CGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * ** * * *
27404415 -CTATTAGTGTTCGTATGATCACACCTATCAACTCTTACGCAATCTACTTATATAAAGGCTACCC
1 GC-ATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCC
* * * *
27404479 CTTATTGCCCTTGCGCCAT-GACTTTGAATTCAAATTCGACCAAATAATGTTTCAAGTGATTTAT
65 CTTATCGCACTTGCGCC-TCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTAT
* * * * * ** *
27404543 TTAGTAAAATGCAAATAACTAATTAGGTAAAC-ATTTTTTAAAAAACCTTACATAAAATAT-AAA
129 TTCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAA
* * * * *
27404606 TGGGAAGGGTGCAACACGAGGACTTCCTAGGAGGTCA-CCATCCTAGTACTTCTCTCGCCTAGGC
194 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * *
27404670 TCGCTTATCTTG-GGAGCTTC-GATTGG-TCCCGAT
259 ACGCTTAAC-TGCGGAG-TTCTGATGGGAT-CCGGT
** *
27404703 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTTATATGAAGGCTACCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * *
27404768 TTATCGCACTTCCTCTTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTAATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * * * * *
27404833 TGTAAAATG-ATAATAAGTAATTAGTTAAATTATATTT--AAAAAAATTACATGGAATATAAAAA
131 CGTAAAACGCA-AATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAAT
* * * *
27404895 GGGAGGGGTGCAACACGAGGACTTTCCAGGAGGTCACCCATCCTAGCATTACTCTCG-CCAAGGG
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA-GC
* * *
27404959 ACGCTTAACTACAGAGTTCTGATGGGATCCGGA
259 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
** * * ** * * * *
27404992 GCATTAGCACTGGTATAATCGCACCCGGCAACTCAAGCGCATTCTATTTATATAAAGGATTCTCT
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* ** * ** * ** * *
27405057 TTATCGCACTTGCCCCTCGAATTTGAATTTGAATTCAAGAAAACAACGTTTTGAGAGATATATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * *
27405122 CGTAAAACACAAAAAACTAATTAGTT-AAGTGATGTTTAAAGAAAAAAAT-CAATGAAATATAAA
131 CGTAAAACGCAAATAACTAATTAGTTAAACT-ATGTTTAAA-AAAAAATTAC-ATGAAATATAAA
* * ** * * * * *
27405185 ACGGGAGGGGTGCAACACAAAAACTTCCTAGGAAGTCACCCATCCTAGTACTATTTTTGCCC--G
193 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
* *
27405248 CATACGCTTAACTGCAGAGTTCTGATGGGATCTGGT
258 C--ACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * *
27405284 GCATTAGTGATGGTATGATCACGCCCGTCAACTCTTGCGCATTCTATTTATATGAAGGCTACCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* ** * *
27405349 TTATCGCACCTGTACCACGAATTT-TATATCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
66 TTATCGCACTTGCGCCTCGAATTTGAAT-TCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* *
27405413 TCGTAAAATGCAAATAACTAATTAGTTAAA-TGATGTTTAAAGAAAAAAATTACATGAAAAATAA
130 TCGTAAAACGCAAATAACTAATTAGTTAAACT-ATGTTT-AA-AAAAAAATTACATGAAATATAA
* * * **
27405477 AATGGGAGGGATGCAACACGAGGACTTCCCAGGATGTCACCCATCCTAGTACGACTCTTACCCAA
192 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * **
27405542 GCACGATTAACTGCAGAGTTCTGATGGGATCCTCT
257 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
** * * * * * **
27405577 GCATTAAAGCTGGTATGGTCACACCCGTCAACTTTTACGAATTCTATTTATATAAAGGCTATACC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * *
27405642 TTATTGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCGAATAATGTTTCAAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * * *
27405707 CGTAAAACGCAAATAACTAATTAGTTAAACAATGTTT-AAAAAAACTTACATCAAATATCAAATA
131 CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAATG
* * *
27405771 GGAGTGGTGCAACACGAGGACATT-CCAGGATGTCACCCATTCTAGTACTACTCTCGCCCAAGCA
196 GGAGGGGTGCAACACGAGGAC-TTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * *
27405835 TGCTTAAATGCGGAGTTCTGATGGGATTCGGT
260 CGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* ** * ***
27405867 GCATTATTGAGGGTATGATCACACTTATCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * *
27405932 TTATCGCACATGCGTCTCGAATTTGAATTCAAATTCTACCAAATACCGTTTCAAGTGATTTTTTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * * * *
27405997 CGTAAAACGTAAATAACTAATTTGTTAAAATATATTT-AAAAAAAATCTACTTGAAATATAAATT
131 CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAAT-TACATGAAATATAAAAT
* * * * *
27406061 AGG-GGGGTGCAACACGAGGACTTCCTAGAAGGTCACCCATCCTAATACAACTCTCGCCCAAGCA
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* *** *
27406125 CTCTTAACTGCATTGTTCTGATGGGATCCGAT
260 CGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * ** * *
27406157 GCATTAGTGCCGGTATGATGGCACCCATCAGTTCTTGGGCATTCT-TTTCGTATAAAGGCTA-CC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTT-ATATAAAGGCTACCC
* *
27406220 CTTATCGCACTTGCGCCTTGAATTTGAATTCAAATTTGACCAAATAACAG-TTCAAGTGATTTAT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAAC-GTTTCAAGTGATTTAT
* *
27406284 TTCGTAAAACGCAAATAACTAATTAGTTAAACAATGTTTAAAGAAAAAAATTACATGAAACATAA
129 TTCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTT-AA-AAAAAAATTACATGAAATATAA
* * * *
27406349 AATGGGAGGTGTGCAACACGAGGACATCCCAAGAGGTCGA-CCATCCTAGTACTACTCTCGCCCG
192 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC-ACCCATCCTAGTACTACTCTCGCCCA
* *
27406413 AGCATGCTTAACTGCAGAGTTCTGATGGGATCCGGT
256 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * ** * *
27406449 GCATTAGTGCTAGTATCATCGCACCAGTCAACTCTTGTTCATTCTATTTATATGAAGGCTGCCCC
1 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * *
27406514 TTATCGCACTTGCGCTTTGAATTT-AATTCAAATTCGACCAAATAACGTTTCTAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * *
27406578 CGTAAAATGAAAATAACTAATTAGTTAAACTATGTTTTAAAAAAAATTACACGAAATATAAAATG
131 CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAATG
* * * *
27406643 GGAGGGGTGCAACACGAGAACTTCCTAGGAGGTTACCCATCCTAGTACAACTCT
196 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT
27406697 GGGATCCGGT
Statistics
Matches: 4775, Mismatches: 855, Indels: 256
0.81 0.15 0.04
Matches are distributed among these distances:
276 7 0.00
277 218 0.05
278 2 0.00
280 1 0.00
282 3 0.00
283 1 0.00
284 1 0.00
285 1 0.00
287 42 0.01
288 591 0.12
289 751 0.16
290 1036 0.22
291 660 0.14
292 556 0.12
293 659 0.14
294 7 0.00
295 9 0.00
296 221 0.05
297 9 0.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (291 bp):
GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAATTACATGAAATATAAAATG
GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
GCTTAACTGCGGAGTTCTGATGGGATCCGGT
Found at i:27401990 original size:581 final size:579
Alignment explanation
Indices: 27400649--27407361 Score: 6968
Period size: 581 Copynumber: 11.6 Consensus size: 579
27400639 CAGATCTGGC
* * *
27400649 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCACATTCTATTTATATAAAGCCT-GCCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* *
27400713 TTATCGTACTTGCGCCTCGAATTTGAATTCAAATTC-ATCCAAATAATGTTTCAAGTGATTTATT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGA-CCAAATAACGTTTCAAGTGATTTATT
*
27400777 TCGTAAAACGCAAATAACTAATTAGTTAAACAATGTTTAAAAATAAATTACATGAAATATAAAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAA-AAATTACATGAAATATAAAAT
* *
27400842 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTAC-CTTAAGC
194 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT-CGC-CAAGC
* * * *
27400906 ACGCTTAACTACGGAGTTCTGATGGGAACCGGTACATTAGTGCTGGTATGTTCGCACCCGTCAAC
257 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
* * *
27400971 TCCTGCGCACTCTATTTATAT-AAAGACTACCCCTTA-CTGTACTTGCGCCTCGAATTTGAATTC
322 TCTTGCGCAATCTATTTATATAAAAG-CTACCCCTTATC-GCACTTGCGCCTCGAATTTGAATTC
* * * *
27401034 AAATTCGACCAAATAATGTTTCAAGTGATTTATTTCATAAAACGTAAATACCTAATTAGTTAAAC
385 AAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAAC
* *
27401099 TATGTTT-AAAAAAA-TACACGAAATATAAAACGGGAGGGGTGCAACACGAGGACTTCCCAGGAG
450 TATGTTTAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAG
* * * * *
27401162 GTCACCAATCCCAGTGCTACTCTCGCCCAAGCACGCTTAGCTGCGGAGTTCTGATGGGATTCGGT
515 GTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * * * * ** * *
27401227 GCAATAGTGCTGGAATTATCGCACCCATCAGTTCTTGCGCATTCCATTTATATAAAGGGTACCCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * * *
27401292 TTATCCCTCTTGCGCCTTGAATTTGAAGTCAAATTCGACGAAATAACATTTCAAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * *
27401357 CGTAAAACACAAATAACTAATTAGTTAAACGATCTTTTAAGAAAACAATTACATGAATTATAAAA
131 CGTAAAACGCAAATAACTAATTAGTTAAACTAT-GTTTAA-AAAA-AATTACATGAAATATAAAA
*
27401422 TGGGAGGGGTGCAACACGAGGAGTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCAGCCAAGC
193 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC-GCCAAGC
* * * * *
27401487 ATGCTTACCTTCGGAGTTCTGATGGGATCCGGTGTATTAGTGCTGGTA-GCATCGCACTCGTCAA
257 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG-ATCGCACCCGTCAA
* * * * * *
27401551 CTCTTGCACAATCTATTTATGTAAAAGCTACCCCTTATCGCCCTTGGGCCTCAAATTTGAATTGA
321 CTCTTGCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCA
*
27401616 AATTCGACCAAATAACGTTTCAAGCGATTTATTTCGT-AAACGCAAATAACTAATTAGTTAAACT
386 AATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACT
* * * * **
27401680 TTGTTTAAAAAAAAATTACATGCAATATAAAATGGGAAGGGTGCAACAC-AGGGACTTGCTGGGA
451 ATGTTT-AAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGA-GGACTTCCCAGGA
* * * * * *
27401744 GATCACCCATCCTAGCACTACTCTCGCCCAAGCACACTTAACTTCGGAGTTCTGATAGGATCCAG
514 GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGG
27401809 T
579 T
* *
27401810 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACTCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
** * *
27401875 TTATCATACTTGCGCCTCGAAATTGAATTCAAATTTGACCAAATAACGTTTCAAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * * **
27401940 TGAAAAACGCAAATAACTTATTACTTAAACTATGTTTAAAAATAAATTACATGAAATATAAAACA
131 CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAA-AAATTACATGAAATATAAAATG
* * * * * * * * **
27402005 AGAGGGGTGCAACATGTGGATTTCCTAAGAGGTCACCCATCCTAATTCTACTCTATTCCAAGCAC
195 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT-CGCCAAGCAC
* * * * * *
27402070 ACTTAACTCCGGAGTTCTGATGGGATTCGGTGCATTAGTGCTAGTA-GCATCGCACCTGTCAATT
259 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG-ATCGCACCCGTCAACT
* * *
27402134 CTTGTGCAATCTCTTTATGTAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAA
323 CTTGCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAA
* * * * * *
27402199 TTCGACCAAACAGCGTTTCAAGAGATTTATTTCATAAAATGCAAATAACTAATTAG-TAAACAAT
388 TTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACTAT
* * * * *
27402263 GTCTAAAAAACAAAAATAATTACATGAAATATAAAATGAGAGGGGTGCAATACGAGGACTTGCCG
453 GT-T----TA-AAAAA-AATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * * * * * **
27402328 GGAGATCACCCGTCCTAGTACTACTCTCACCCAACCACG-TATAAATTCAAAGTTCTGATGGGAT
511 GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCT-TAACTGCGGAGTTCTGATGGGAT
*
27402392 TCGGT
575 CCGGT
* * * * *
27402397 GCATTAGTGCTGGTATGATCACACCTGTCAACTCTTACGCAATCTACTTACA-AAGAGGCTACCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAA-AGGCTACCC
* * *
27402461 CTTATCGCACTTGCGCCTCGAATTTGAATTTAAATTCGAACAAATAATGTTTCAAGTGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* * * *
27402526 TCGTAAAACGCTAACAAGTAATTAGTTAAATTATGTTT-AAAAAAATTACATGAAATATAAAATG
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAATTACATGAAATATAAAATG
* * *
27402590 GGATGGGTGCAACACGAGGACTTTCCAGGATGGTCACCCATCCTAGTACTACTCTCGCCCAGGCA
195 GGAGGGGTGCAACACGAGGACTTCCCAGGA-GGTCACCCATCCTAGTACTACTCTCG-CCAAGCA
* *** * * *
27402655 TGCTTAACTGCGGAGTTCTGATGGGATTTTGAGCATTAGTACTGGTATGATCGCACCCATCAACT
258 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACT
* * * * *
27402720 CTTGCGTATTCCATTTATAT-AAAGCTACCCCTTATCGCACTTGAGCCTCAAATTTGAATTCAAA
323 CTTGCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAA
* * * * * * * *
27402784 TTTGA-AAAAGCAACGTTTCAAGTGATATATTTCATGAAACGCAAATAACTAATTTGTT-AAGTG
388 TTCGACCAAA-TAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACT-
* ** * **
27402847 ATGTTTAAAAAAAAAATT-CAATGAAAAATAAAATGGTTGGGGCGCAACACGAGGACTTCCTTGG
451 ATGTTT--AAAAAAAATTAC-ATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGG
* * * * * * ** * * * * *
27402911 ATGTCA-CCATGCTAGTACCAGTTTTGCCCGTGCACGGTTAACCGCAGAGTTTTGATGGGATCCA
513 AGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG
27402975 GT
578 GT
* * * * *
27402977 GCATTAGTGATGGTATGGTCGCCCCCGTCAACTCTTGCTCATTCGT-TTTATATAAAGGCTACCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTC-TATTTATATAAAGGCTACCC
* * * *
27403041 CTTATCGCACTTGCACCTCGAATTTGAATTCAAATTCAACCAAATAATGCTTCAAGTGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* *
27403106 TCGTAAAACGCATATAACTAATTAGTTAAACGATGTTTAAAGAAAAAAATTACATGAAATATAAA
130 TCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTT--A-AAAAAAATTACATGAAATATAAA
27403171 ATGGGAAGGGG-GCAACAC-ATGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
192 ATGGG-AGGGGTGCAACACGA-GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG-CCA
* * ** * ** * *
27403234 AGCATGCTTGACTGCGGAAATCTGATGGGATCTGGTGCATTAGTGAGGGCATGATCGGACCCGTC
254 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* * * * * * * *
27403299 AACTCTTGCGCATTCAATTTATATAAAGGCTACCCCATATCACACTTACGCATCAAATTTGAATT
319 AACTCTTGCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATT
* * * *
27403364 CAAATTCGACCAAATCACGTTGCAAGTGATTTATTTCGTTAAATGCAAATAACT-A--A--T---
384 CAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAA
* ** *
27403421 -TA-G-TT--AAAAAATTACATGAAATATAAAATGGGAGGGGTGCACCACGACTACTTCCCAGGC
449 CTATGTTTAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGA
** * * *
27403481 GGTCACCCATCCTAGTACTACTCTTTCCCAAGCATGCTTAACTGTGGAGTTTTGATGGGATCCGG
514 GGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGG
27403546 T
579 T
* * * * * * * *
27403547 CCATTGGTGCTGGTATGATCACACCCATCAACTCTTACGCAATCTACTTATATAAGGGCCACCCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * *
27403612 TTATCGCCCTTGTGCCTCGAATTTGAATTCAAATTCAACCAAAT-ACTGTTTCAACTGATTTATT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAAC-GTTTCAAGTGATTTATT
** * * * * *
27403676 TAATAAAACGCAAATAACTAAGTAGGTAAA-TGTTTTTTAAAAAAAATTACATAAAATAT-AAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAACT-ATGTTTAAAAAAAATTACATGAAATATAAAAT
* * *
27403739 GGGAGGGGTGCAACACGAGGACTTCTCAAGAGGTCACCCATCCTAGTACTACTCTCGCCTAGGCA
194 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC-AAGCA
* ** * * ** *
27403804 CGTTTATTTG-GAGAGTTCTGTTTGGA-CCTGGTGCATTAGTGCTGGTAT-ATTTTCACTCGTCA
258 CGCTTAACTGCG-GAGTTCTGATGGGATCC-GGTGCATTAGTGCTGGTATGA-TCGCACCCGTCA
* * * * *
27403866 ACTCTTGCGCAATCTATTTATACAAAGGCTACCCCTTATCACACTTCCGCTTCGAATTTGAATTC
320 ACTCTTGCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTC
* * * * * * * *
27403931 AAATTCGACCAAATAAC-ATTCCAGTGATTTATTTCGTAAAATGCTAATAAGTAATTAGCTCAAT
385 AAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAAC
** *
27403995 TATGTTT-AAAAAAATTACATGAAATATAAAATTTAGAGGGGTGCAACACGAGGAATTTCCCA-G
450 TATGTTTAAAAAAAATTACATGAAATATAAAA-TGGGAGGGGTGCAACACGAGG-ACTTCCCAGG
* * *
27404058 AGGTCACCCATCCTAGTACTACTATCGCCCAGGCACGCTTAACTGCGGAGTTCTGATGGGAT-CA
513 AGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG
27404122 GT
578 GT
** * * * *
27404124 GCATTAGTGAGGGTATGATCATACCCGTCAACTGTTGCGCCTTCTATTTATATAAAAGCTACCCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * ** *
27404189 ATATCACACTTGCACCTCGAATTTTAATTCAAATTAAACCAAATAACATTTCAAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * *
27404254 CGTTAAACGCAAATAAGTAATTAGTTAAACGATGTTTAAAAAAAAGTTACATGAAATATAAAATG
131 CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAA-TTACATGAAATATAAAATG
* * * * *
27404319 GGAGGGGTGCAACACGAGTACATCCCAGGAGGTCACCCATCCTTGTACTACTCTACCCCAAGCAT
195 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT-CGCCAAGCAC
* * * * * * * * * **
27404384 GATTGATTGCGGGGTTCTGATAGGATTCGGT-CTATTAGTGTTCGTATGATCACACCTATCAACT
259 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGC-ATTAGTGCTGGTATGATCGCACCCGTCAACT
* * * * * *
27404448 CTTACGCAATCTACTTATATAAAGGCTACCCCTTATTGCCCTTGCGCCAT-GACTTTGAATTCAA
323 CTTGCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGCGCC-TCGAATTTGAATTCAA
* * * *
27404512 ATTCGACCAAATAATGTTTCAAGTGATTTATTTAGTAAAATGCAAATAACTAATTAGGTAAAC-A
387 ATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACTA
* ** * * *
27404576 TTTTTTAAAAAACCTTACATAAAATAT-AAATGGGAAGGGTGCAACACGAGGACTTCCTAGGAGG
452 -TGTTTAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGG
* * * * * *
27404640 TCA-CCATCCTAGTACTTCTCTCGCCTAGGCTCGCTTATCTTG-GGAGCTTC-GATTGG-TCCCG
516 TCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC-TGCGGAG-TTCTGATGGGAT-CCG
*
27404701 AT
578 GT
* ** *
27404703 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTTATATGAAGGCTACCCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * *
27404768 TTATCGCACTTCCTCTTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTAATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * * * * *
27404833 TGTAAAATG-ATAATAAGTAATTAGTTAAATTATATTT-AAAAAAATTACATGGAATATAAAAAG
131 CGTAAAACGCA-AATAACTAATTAGTTAAACTATGTTTAAAAAAAATTACATGAAATATAAAATG
* * * *
27404896 GGAGGGGTGCAACACGAGGACTTTCCAGGAGGTCACCCATCCTAGCATTACTCTCGCCAAGGGAC
195 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCAA-GCAC
* * * ** * *
27404961 GCTTAACTACAGAGTTCTGATGGGATCCGGAGCATTAGCACTGGTATAATCGCACCCGGCAACTC
259 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
** * * * * * * * **
27405026 AAGCGCATTCTATTTATATAAAGGATTCTCTTTATCGCACTTGCCCCTCGAATTTGAATTTGAAT
324 TTGCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAAT
* ** * ** * * * * *
27405091 TCAAGAAAACAACGTTTTGAGAGATATATTTCGTAAAACACAAAAAACTAATTAGTT-AAGTGAT
389 TCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACT-AT
* * * ** * *
27405155 GTTTAAAGAAAAA-AATCAATGAAATATAAAACGGGAGGGGTGCAACACAAAAACTTCCTAGGAA
453 GTTTAAA-AAAAATTA-C-ATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAG
* * * * *
27405219 GTCACCCATCCTAGTACTATTTTTGCCC--GCATACGCTTAACTGCAGAGTTCTGATGGGATCTG
515 GTCACCCATCCTAGTACTACTCTCGCCCAAGC--ACGCTTAACTGCGGAGTTCTGATGGGATCCG
27405282 GT
578 GT
* * *
27405284 GCATTAGTGATGGTATGATCACGCCCGTCAACTCTTGCGCATTCTATTTATATGAAGGCTACCCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* ** * *
27405349 TTATCGCACCTGTACCACGAATTT-TATATCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
66 TTATCGCACTTGCGCCTCGAATTTGAAT-TCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* *
27405413 TCGTAAAATGCAAATAACTAATTAGTTAAA-TGATGTTTAAAGAAAAAAATTACATGAAAAATAA
130 TCGTAAAACGCAAATAACTAATTAGTTAAACT-ATGTTT--A-AAAAAAATTACATGAAATATAA
* * *
27405477 AATGGGAGGGATGCAACACGAGGACTTCCCAGGATGTCACCCATCCTAGTACGACTCTTAC-CCA
191 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTC-T-CGCCA
* * ** ** * *
27405541 AGCACGATTAACTGCAGAGTTCTGATGGGATCCTCTGCATTAAAGCTGGTATGGTCACACCCGTC
254 AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
* * * ** *
27405606 AACTTTTACG-AATTCTATTTATATAAAGGCTATACCTTATTGCACTTGCGCCTCGAATTTGAAT
319 AACTCTTGCGCAA-TCTATTTATATAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAAT
* *
27405670 TCAAATTCGACCGAATAATGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
383 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* * * * * *
27405735 ACAATGTTTAAAAAAACTTACATCAAATATCAAATAGGAGTGGTGCAACACGAGGACATT-CCAG
448 ACTATGTTTAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGAC-TTCCCAG
* * * * *
27405799 GATGTCACCCATTCTAGTACTACTCTCGCCCAAGCATGCTTAAATGCGGAGTTCTGATGGGATTC
512 GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCC
27405864 GGT
577 GGT
* ** ***
27405867 GCATTATTGAGGGTATGATCACACTTATCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * *
27405932 TTATCGCACATGCGTCTCGAATTTGAATTCAAATTCTACCAAATACCGTTTCAAGTGATTTTTTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * * * * *
27405997 CGTAAAACGTAAATAACTAATTTGTTAAAATATATTTAAAAAAAATCTACTTGAAATATAAATTA
131 CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAAT-TACATGAAATATAAAATG
* * * *
27406062 GG-GGGGTGCAACACGAGGACTTCCTAGAAGGTCACCCATCCTAATACAACTCTCGCCCAAGCAC
195 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG-CCAAGCAC
* *** * * * * **
27406126 TCTTAACTGCATTGTTCTGATGGGATCCGATGCATTAGTGCCGGTATGATGGCACCCATCAGTTC
259 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTC
* * * * *
27406191 TTGGGCATTCT-TTTCGTATAAAGGCTA-CCCTTATCGCACTTGCGCCTTGAATTTGAATTCAAA
324 TTGCGCAATCTATTT-ATATAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAA
* *
27406254 TTTGACCAAATAACAG-TTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACAA
388 TTCGACCAAATAAC-GTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACTA
* * * *
27406318 TGTTTAAAGAAAAAAATTACATGAAACATAAAATGGGAGGTGTGCAACACGAGGACATCCCAAGA
452 TGTTT--A-AAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGA
* * *
27406383 GGTCGA-CCATCCTAGTACTACTCTCGCCCGAGCATGCTTAACTGCAGAGTTCTGATGGGATCCG
514 GGTC-ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG
27406447 GT
578 GT
* * * * ** * *
27406449 GCATTAGTGCTAGTATCATCGCACCAGTCAACTCTTGTTCATTCTATTTATATGAAGGCTGCCCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * *
27406514 TTATCGCACTTGCGCTTTGAATTT-AATTCAAATTCGACCAAATAACGTTTCTAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * *
27406578 CGTAAAATGAAAATAACTAATTAGTTAAACTATGTTTTAAAAAAAATTACACGAAATATAAAATG
131 CGTAAAACGCAAATAACTAATTAGTTAAACTATG-TTTAAAAAAAATTACATGAAATATAAAATG
* * *
27406643 GGAGGGGTGCAACACGAGAACTTCCTAGGAGGTTACCCATCCTAG--------T--------A--
195 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCAAGCACG
* * * * * **
27406690 C--AA---C-----TC---TGGGATCCGGTGCATTAGTGTTCGTATGATCTCACCCATTAGTTCT
260 CTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCT
* * * * * * * * *
27406742 TGTGCATTCTGTTTATATAAAGGATATCCCATATCGTACTTGCGCCTTGAATTTGAATTCAAATT
325 TGCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATT
* * * * *
27406807 CGACCAAATAACGTTTCAAGTGTTTTATTTCGTAAAACGCAAAAAATTAATTAGTTAATCGATGT
390 CGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACTATGT
* * * * *
27406872 TTAAAGAAAAAAATTATAGGAAACATAAAATGGGAGGGGTGCAGCACGAGGACCTCCCAGGAGGT
455 TT--A-AAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGT
* * * * * * **
27406937 CACCCATCCTAGTATTACTCTCGCCCGAGCAAGCTTAACTACGGAGTTTTGAT-GGCTCCATT
517 CACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
* * *
27406999 CCATTAGTGCTAGTATGATCACACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCC
1 GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* *
27407064 TTATCGAACTTGCGCCTTGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* *
27407129 CGTAAAACGCAAATAGA-TAATTAGTTAAACTA----T-AAAAAATTTACATGAAATAGAAAATG
131 CGTAAAACGCAAATA-ACTAATTAGTTAAACTATGTTTAAAAAAAATTACATGAAATATAAAATG
* * * * *
27407188 GGAGGGGTACAACACGAGGATTTCCTAGGAGGTCACCCATCATAGTACAACTCTCGCCCAAGCAC
195 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG-CCAAGCAC
* * ** * * ** * * **
27407253 TCTTAACTGTGGAGTTCTGATGGGATCTAGTGCGTTAGCT-TTGGTATGATCTAACACATCAGTT
259 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG-TGCTGGTATGATCGCACCCGTCAACT
* * * *
27407317 CTTGTGCATTCTGTTTATATAAAGGCTACCCCTTATCGCACTTGC
323 CTTGCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGC
27407362 CCAAGCACTC
Statistics
Matches: 5108, Mismatches: 852, Indels: 351
0.81 0.14 0.06
Matches are distributed among these distances:
545 63 0.01
546 1 0.00
550 144 0.03
551 268 0.05
552 1 0.00
553 3 0.00
558 1 0.00
561 2 0.00
562 1 0.00
563 1 0.00
564 1 0.00
565 40 0.01
566 171 0.03
567 20 0.00
568 2 0.00
569 49 0.01
570 184 0.04
573 2 0.00
574 6 0.00
575 2 0.00
576 11 0.00
577 453 0.09
578 197 0.04
579 547 0.11
580 444 0.09
581 787 0.15
582 272 0.05
583 568 0.11
584 136 0.03
585 371 0.07
586 118 0.02
587 241 0.05
588 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (579 bp):
GCATTAGTGCTGGTATGATCACACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
CGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAATTACATGAAATATAAAATGG
GAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCAAGCACGC
TTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTT
GCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTC
GACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACTATGTT
TAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
CATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGT
Found at i:27407755 original size:410 final size:402
Alignment explanation
Indices: 27407003--27407771 Score: 958
Period size: 410 Copynumber: 1.9 Consensus size: 402
27406993 TCCATTCCAT
* * *
27407003 TAGTGCTAGTATGATCACACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTAT
1 TAGTGCTAGTATAATCACACCCATCAACTCTTGCGCAATCTATGTATATAAAGGCTACCCCTTAT
*
27407068 CGAACTTGCGCCTTGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTA
66 CGAACTTGCGCCTTGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTATTTCGTA
* * *
27407133 AAACGCAAATAGATAATTAGTTAAACTATAAAAAATTTACATGAAATAGAAAATGGGAGGGGTAC
131 AAACGCAAATAGATAATTAGTTAAACTAGAAAAAAATTACATGAAATAGAAAATGGGAAGGGTAC
* * * **
27407198 AACACGAGGATTTCCTAGGAGGTCACCCATCATAGTACAACTCTCGCCCAAGCACTCTTAACTGT
196 AACACGAGCACTTCCTAAGAGGTCACCCATCATAGTACAACTCTCGCCCAAGCACTCTTAACTAC
* * * ** ** *
27407263 GGAGTTCTGATGGGATCTAGTGCGTTAGCTTTGGTATGATCTAACACATCAGTTCTTGTGCATTC
261 GAAGTTCTGATGGGATCTAGTGCATTAGCTCTGGTATGATCTAACACATCAACTCTTACGCAATC
*
27407328 TGTTTATATAAAGGCTACCCCTTATCGCACTTGCCCAAGCACTCTTAACTAGGCAGTTCAGATGG
326 TATTTATATAAAGGCTACCCCTTATCGCACTTGCCCAAGCACTCTTAACTAGGCAGTTCAGATGG
27407393 GATTCGGTACAA
391 GATTCGGTACAA
* * * * * * *
27407405 TAGTGCTGGTATAATCGCACCCATCAATTCTTGTGCATTCTATGTATATATAGGTTACCCCTTAT
1 TAGTGCTAGTATAATCACACCCATCAACTCTTGCGCAATCTATGTATATAAAGGCTACCCCTTAT
** * *
27407470 CGGTCTTGCGCCTTGAATTTGAAATT-AAATTTGACCAAATAACATTTCAAGAT-ATTTATTTTG
66 CGAACTTGCGCCTTGAATTTG-AATTCAAATTCGACCAAATAACATTTCAAG-TGATTTATTTCG
* * *
27407533 TAAAATGTAAATA-ACTAATTAGTTAAACGATGTTTAAAGAAAAAAATTACATGAAATATAAAAT
129 TAAAACGCAAATAGA-TAATTAGTTAAAC------T--AGAAAAAAATTACATGAAATAGAAAAT
* * *
27407597 GGGAAGGGTGCAACACGAGCACTTCCTAAGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
185 GGGAAGGGTACAACACGAGCACTTCCTAAGAGGTCACCCATCATAGTACAACTCTCGCCCAAGCA
* * * *
27407662 -TGCTTAACTACGAAGTTCTGATGGGATC-AGGTGCATTTG-TGCTGGTATGAT-TGCACCCGTC
250 CT-CTTAACTACGAAGTTCTGATGGGATCTA-GTGCATTAGCT-CTGGTATGATCT-AACACATC
* *
27407723 AACTCTTACGCAATCTATTTCTGTAAAGGCTACCCCTTATCGCACTTGC
311 AACTCTTACGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGC
27407772 AACTAGAATT
Statistics
Matches: 308, Mismatches: 44, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
401 1 0.00
402 130 0.42
403 5 0.02
408 1 0.00
409 4 0.01
410 167 0.54
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (402 bp):
TAGTGCTAGTATAATCACACCCATCAACTCTTGCGCAATCTATGTATATAAAGGCTACCCCTTAT
CGAACTTGCGCCTTGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTATTTCGTA
AAACGCAAATAGATAATTAGTTAAACTAGAAAAAAATTACATGAAATAGAAAATGGGAAGGGTAC
AACACGAGCACTTCCTAAGAGGTCACCCATCATAGTACAACTCTCGCCCAAGCACTCTTAACTAC
GAAGTTCTGATGGGATCTAGTGCATTAGCTCTGGTATGATCTAACACATCAACTCTTACGCAATC
TATTTATATAAAGGCTACCCCTTATCGCACTTGCCCAAGCACTCTTAACTAGGCAGTTCAGATGG
GATTCGGTACAA
Found at i:27408062 original size:269 final size:269
Alignment explanation
Indices: 27407579--27408119 Score: 683
Period size: 269 Copynumber: 2.0 Consensus size: 269
27407569 AAGAAAAAAA
* * * *
27407579 TTACATGAAATATAAAATGGGAAGGGTGCAACACGAGCACTTCCTAAGAGGTCACCCATCCTAGT
1 TTACATGAAATATAAAATGGGAAGGGTGCAACACGAGCACTTCCCAAGAGGTCAACCAACCAAGT
* * * * *
27407644 ACTACTCTCGCCCAAGCATGCTTAACTACGAAGTTCTGATGGGATCAGGTGCATTTGTGCTGGTA
66 ACAACTCTCGCCCAAGCATGCTTAACTACAAACTTCTGATGGGATCAGGTGCATTAGTACTGGTA
* * * * * *
27407709 TGATTGCACCCGTCAACTCTTACGCAATCTATTTCTGTAAAGGCTACCCCTTATCGCACTTGCAA
131 TGATCGCACACATCAACTCTTACGCAATCTATTTATATAAAGGCTACACCTTATCGCACTTGCAA
* *
27407774 CTAGAATTTGAAATCAAATTTGACCAAAAAACATTTCAAATGATTTGTTTCGTAAAAC-ACAAAT
196 CTAGAATTTGAAATCAAATTCGACCAAAAAACATTTCAAATGATTTATTTCGTAAAACGA-AAAT
27407838 AACTAATTAG
260 AACTAATTAG
* * * * *
27407848 TTACATGAAATATAAAATTGGAGGGGTTCAACACGAGGACTTCCCAGGAGGTCAACCAACCAAAG
1 TTACATGAAATATAAAATGGGAAGGGTGCAACACGAGCACTTCCCAAGAGGTCAACCAACC-AAG
* * * *
27407913 -ACAACTCTCGCCCAAGCACT-CTTAATTGCAAACTTTTGATGGGATCCGGTGCATTAGTACTGG
65 TACAACTCTCGCCCAAGCA-TGCTTAACTACAAACTTCTGATGGGATCAGGTGCATTAGTACTGG
** * * * *
27407976 TATGATCGCACACATCAGTTCTTGCGCATTCTGTTTATATAAAGGCTACACTTTATCGCACTTGC
129 TATGATCGCACACATCAACTCTTACGCAATCTATTTATATAAAGGCTACACCTTATCGCACTTGC
** * * * * *
27408041 GCCTTGAATTTGAATTCAAATTCGACTAAATAACATTTCAAGTGATTTATTTCGTAAAACGAAAA
194 AACTAGAATTTGAAATCAAATTCGACCAAAAAACATTTCAAATGATTTATTTCGTAAAACGAAAA
27408106 TAACTAATTAG
259 TAACTAATTAG
27408117 TTA
1 TTA
27408120 AACGATGTTT
Statistics
Matches: 230, Mismatches: 39, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
269 226 0.98
270 4 0.02
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (269 bp):
TTACATGAAATATAAAATGGGAAGGGTGCAACACGAGCACTTCCCAAGAGGTCAACCAACCAAGT
ACAACTCTCGCCCAAGCATGCTTAACTACAAACTTCTGATGGGATCAGGTGCATTAGTACTGGTA
TGATCGCACACATCAACTCTTACGCAATCTATTTATATAAAGGCTACACCTTATCGCACTTGCAA
CTAGAATTTGAAATCAAATTCGACCAAAAAACATTTCAAATGATTTATTTCGTAAAACGAAAATA
ACTAATTAG
Found at i:27408789 original size:283 final size:282
Alignment explanation
Indices: 27407848--27408964 Score: 1111
Period size: 283 Copynumber: 3.9 Consensus size: 282
27407838 AACTAATTAG
* * * * *
27407848 TTACATGAAATATAAAATTGGAGGGGTTCAACACGAGGACTTCCCAGGAGGTCAACCAACCAAAG
1 TTACATGAAATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCC-TAG
* * * ** * * *
27407913 -ACAACTCTCGCCCAAGCACTCTTAATTGCAAACTTTTGATGGGATCCGGTGCATTAGTACTGGT
65 TACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT-CAGGT
* * * * * * * *
27407977 ATGATCGCACACATCAGTTCTTGCGCATTCTGTTTATATAAAGGCTACACTTTATCGCACTTGCG
129 ATGATCACACCCGTCAATTCTT-CGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCG
* *
27408042 CCTTGAATTTGAATTCAAATTCGACTAAATAACATTTCAAGTGATTTATTTCGTAAAACGAAAAT
193 CCTCGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTATTTCGT------AAAAT
*
27408107 AACTAATTAGTTAAACGATGTTTAAAGAAAAAAA
252 AACTAATTACTTAAACGATGTTT---GAAAAAAA
* * *
27408141 TTACATGAAACATAAAATAGGAGGGGTGCAACACAAGGACTTCCCAGGAGGTCACCCATCCCAGT
1 TTACATGAAATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGT
* * * *
27408206 ACTA-TCCTCGCCCAAGCATGCTTAATTGCGGAGTACTGATGGGATCCGGTGCATTAGTAAGGGT
66 ACTACT-CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTCA-GGT
* ** * * * *
27408270 ATGATCACACCCGTCAACTGATCGC-ATAATATTTTTATAAAGGCTACCCCTCATCACACTTGCG
129 ATGATCACACCCGTCAATTCTTCGCAAT-CTATTTATATAAAGGCTACCCCTTATCGCACTTGCG
* * * * * *
27408334 CATCGTATTTGAATTCAAATTCGACGAAATAACATTTCGAGTGATATATTTTGTAAAACACAAAT
193 CCTCGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTATTTCGT-----A-AAAT
*
27408399 AACTAATTACTTAAACTATGTTT-AAAAAAA
252 AACTAATTACTTAAACGATGTTTGAAAAAAA
* * * * * *
27408429 TTTACACGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTTACCCATACTTG
1 -TTACATGAAATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAG
* * *
27408494 TACTACTCTCGCCCGAGCACGCTTAACTGTGGAGTTCTGATGGGATCCGGTGCATTAATGCAGGT
65 TACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT-CAGGT
* * * * * *
27408559 ATGATCATACCCGTCAATTTTTACGCAATCTACTTATATTAGGGCTACCCCTTAACGCACTTGCG
129 ATGATCACACCCGTCAATTCTT-CGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCG
* *
27408624 CCTCGAATTTGAATTGAAATTTGACCAAATAACGA-TTCAAGTGATTTATTTCGT-AAATAACTA
193 CCTCGAATTTGAATTCAAATTCGACCAAATAAC-ATTTCAAGTGATTTATTTCGTAAAATAACTA
27408687 ATTACTTAAACGATGTTTGAAAAAAA
257 ATTACTTAAACGATGTTTGAAAAAAA
* * *
27408713 TTACATGAAATATAAAATAGGAGGGGCGCAACACTAGGACTTCCTAGGAGGTCACCCATCCTAGT
1 TTACATGAAATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGT
* * * * * *
27408778 ACCAGTCTCGCCCAAGCACGCTTAACTGCGTAGTTCTGGA-GGGATCTGGAGCATTAG-CACTAG
66 ACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCT-GATGGGATCCGGTGCATTAGTCA--GG
* * * * * *
27408841 TATAATCACACCCGTCAACTCGT-GCACATTCTATTTATATGAAGGCTTCCCCTTATTGCACTTG
128 TATGATCACACCCGTCAATTCTTCGCA-A-TCTATTTATATAAAGGCTACCCCTTATCGCACTTG
* * * * * * ** *
27408905 CG-CTACAAATTTTAATACAAATTTGACAAAACAATGTTTCAAGTGATATATTTCGTAAAA
191 CGCCT-CGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTATTTCGTAAAA
27408965 CACAAATAAC
Statistics
Matches: 686, Mismatches: 118, Indels: 49
0.80 0.14 0.06
Matches are distributed among these distances:
281 5 0.01
282 3 0.00
283 219 0.32
284 12 0.02
288 7 0.01
289 127 0.19
290 77 0.11
291 8 0.01
292 107 0.16
293 121 0.18
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (282 bp):
TTACATGAAATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGT
ACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTCAGGTAT
GATCACACCCGTCAATTCTTCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCT
CGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTATTTCGTAAAATAACTAATTA
CTTAAACGATGTTTGAAAAAAA
Found at i:27409493 original size:533 final size:527
Alignment explanation
Indices: 27408493--27409496 Score: 1185
Period size: 533 Copynumber: 1.9 Consensus size: 527
27408483 ACCCATACTT
* *
27408493 GTACTACTCTCGCCCGAGCACGCTTAACTGTGGAGTTCTGATGGGATCCGGTGCATTAATGCAGG
1 GTACTACTCTCACCCGAGCACGCTTAACTGTGGAGTTCTGATGGGATCCGGTGCACTAATGCAGG
* * ** * * * ** *
27408558 TATGATCATACCCGTCAATTTTTACGCAATCTACTTATATTAGGGCTACCCCTTAACGCACTTGC
66 TATGATCACACCCGTCAACTCCTACGCAATCTACTTATATAACGGCCACCCCTTAACAAACTTCC
* *
27408623 GCCTCGAATTTGAATTGAAATTTGACCAAATAACGATTCAAGTGATTTATTTCGTAAATAACTAA
131 GCCTCGAATTTGAATTCAAATTCGACCAAATAACGATTCAAGTGATTTATTTCGTAAATAACTAA
* *
27408688 TTACTTAAACGATGTTTGAAAAAAATTACATGAAATATAAAATAGGAGGGGCGCAACACTAGGAC
196 TTACTTAAACGATGTTTGAAAAAAATTACATGAAACATAAAATAGGAGGGGCGCAACACGAGGAC
* * * * * * *
27408753 TTCCTAGGAGGTCACCCATCCTAGTACCAGTCTCGCCCAAGCACGCTTAACTGCGTAGTTCTGGA
261 TTCCTAGAAGGTCACCCATCCCAGAAACACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGGA
* * * *
27408818 GGGATCTGGAGCATTAGCACTAGTATAATCACACCCGTCAACTCGTGCACATTCTATTTATATGA
326 CGGATCCGAAGCATTAGCACTAGTATAATCACACCCGTCAACTCGTGCACATTCTATTTATATAA
* * * * **
27408883 AGGCTTCCCCTTATTGCACTTGCGCTACAAATTTTAATACAAATTTGACAAAACAATGTTTCAAG
391 AGGCTACCCCTTATCGCACTTGCGCTACAAATTTGAATACAAATTCGACAAAACAACATTTCAAG
27408948 TGATATATTTCGTAAAACACAAATAACTAATTAGTTAAGCGATGTTTAACGAAAAATAATTCACC
456 TGATATATTTCGTAAAACACAAATAACTAATTAGTTAAGCGATGTTTAACGAAAAATAATTCACC
27409013 CTTCCTA
521 CTTCCTA
* * * * * *
27409020 GTACTACTCTCACCC-AGGCATGCTTATCTAG-GGAGTTTTGATTGGATCCGGTGCACTACTGCT
1 GTACTACTCTCACCCGA-GCACGCTTAACT-GTGGAGTTCTGATGGGATCCGGTGCACTAATGCA
** * * * *
27409083 GGTATGATTGCACCCGTCAACTCCTACGCAATCTATTTATATAACGGCCACTCCTTATCAAATTT
64 GGTATGATCACACCCGTCAACTCCTACGCAATCTACTTATATAACGGCCACCCCTTAACAAACTT
* * * *
27409148 CCGCTTCGAATTTGAATTCAAATTCGACCAAATAATGTTTTAAGTGATTTATTTCGAAAATCACT
129 CCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGATTCAAGTGATTTATTTCG----T-A--
* * *** * * * *
27409213 AATAAGTAATTAGTTAAATTTTGTTT-AAAAAAATTATATGAAGCATAAAATGGGAGGGGTGCAA
187 AATAACTAATTACTTAAACGATGTTTGAAAAAAATTACATGAAACATAAAATAGGAGGGGCGCAA
* * * * * *
27409277 CACGAGGACTTTCTAGAAGGTCACCCATCCCAGAAATACTCTCACCTAGGCATGCTTAATTGCGG
252 CACGAGGACTTCCTAGAAGGTCACCCATCCCAGAAACACTCTCACCCAAGCACGCTTAACTGCGG
* * * * *
27409342 AGTTCT-GATCGGATCCGAAGCATTAGCACTAGTATGATCGCACCCGTCAATTC-TAGCGCATTT
317 AGTTCTGGA-CGGATCCGAAGCATTAGCACTAGTATAATCACACCCGTCAACTCGT-GCACATTC
* * *
27409405 TATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCT-CTAATTTGAATTCAAATTCGAC-CAA
380 TATTTATATAAAGGCTACCCCTTATCGCACTTGCG-CTACAAATTTGAATACAAATTCGACAAAA
*
27409468 CTAACATTTCAAGTGATTTATTTCGTAAA
444 C-AACATTTCAAGTGATATATTTCGTAAA
27409497 TAACTAATTA
Statistics
Matches: 391, Mismatches: 73, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
526 1 0.00
527 150 0.38
528 1 0.00
531 1 0.00
532 7 0.02
533 208 0.53
534 23 0.06
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (527 bp):
GTACTACTCTCACCCGAGCACGCTTAACTGTGGAGTTCTGATGGGATCCGGTGCACTAATGCAGG
TATGATCACACCCGTCAACTCCTACGCAATCTACTTATATAACGGCCACCCCTTAACAAACTTCC
GCCTCGAATTTGAATTCAAATTCGACCAAATAACGATTCAAGTGATTTATTTCGTAAATAACTAA
TTACTTAAACGATGTTTGAAAAAAATTACATGAAACATAAAATAGGAGGGGCGCAACACGAGGAC
TTCCTAGAAGGTCACCCATCCCAGAAACACTCTCACCCAAGCACGCTTAACTGCGGAGTTCTGGA
CGGATCCGAAGCATTAGCACTAGTATAATCACACCCGTCAACTCGTGCACATTCTATTTATATAA
AGGCTACCCCTTATCGCACTTGCGCTACAAATTTGAATACAAATTCGACAAAACAACATTTCAAG
TGATATATTTCGTAAAACACAAATAACTAATTAGTTAAGCGATGTTTAACGAAAAATAATTCACC
CTTCCTA
Found at i:27409653 original size:286 final size:285
Alignment explanation
Indices: 27409008--27410058 Score: 1139
Period size: 286 Copynumber: 3.7 Consensus size: 285
27408998 GAAAAATAAT
* * * * * * *
27409008 TCACCCTTCCTAGTACTACTCTCACCCAGGCATGCTTATCTAG-GGAGTTTTGATTGGATCCGGT
1 TCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACT-GCAGAGTTCTGATGGGATCCGGT
* * * * * * * *
27409072 GCACTA-CTGCTGGTATGATTGCACCCGTCAACTCCTA-CGCAATCTATTTATATAACGGCCACT
65 GCATTAGC-ACTGGTATGATCGCACCCGTCAA-TTCTAGCGCATTCTATTTATATAAAGGCTACC
** * * * ** *
27409135 CCTTATCAAATTTCCGCTTCGAATTTGAATTCAAATTCGACCAAATAATGTTTTAAGTGATTTAT
128 CCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTAT
* * * ** * * *
27409200 TTCGAAAATCACTAATAAGTAATTAGTTAA-ATTTTGT-TTAAAAAAATTATATGA-AGCATAAA
193 TTCGTAAATAACTAAT---TAATTA---AACAATAAGTATAAAAAAAATTACATGAGA-TATAAA
* * *
27409262 ATGGGAGGGGTGCAACACGAGGACTTTCTAGAAGG
251 ATAGGAGGGGTGCAACACGAGGACTTTCCAGGAGG
* * * * * * * * * **
27409297 TCACCCATCCCAGAAATACTCTCACCTAGGCATGCTTAATTGCGGAGTTCTGATCGGATCCGAAG
1 TCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTG
* *
27409362 CATTAGCACTAGTATGATCGCACCCGTCAATTCTAGCGCATTTTATTTATATAAAGGCTACCCCT
66 CATTAGCACTGGTATGATCGCACCCGTCAATTCTAGCGCATTCTATTTATATAAAGGCTACCCCT
* *
27409427 TATCGCACTTGCGCCTCTAATTTGAATTCAAATTCGACCAACTAACATTTCAAGTGATTTATTTC
131 TATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTATTTC
* *
27409492 GTAAATAACTAATTACTTAAACAATGAGATATAAAAAAAATTACATGAGATATAAAATAGGAGGG
196 GTAAATAACTAATTAATTAAACAATAAG-TATAAAAAAAATTACATGAGATATAAAATAGGAGGG
* *
27409557 GTGCAACACAAGGACTTCCCAGGAGG
260 GTGCAACACGAGGACTTTCCAGGAGG
* *
27409583 TCACCCATCCTAGTACTACTCTCACCCAAGCACCCTTAACTGTAGAGTTCTGATGGGATCCGGTG
1 TCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTG
*** * * * * * ** *
27409648 CATTAGTGTTGGTACGATTGCACCTGTCAATTTTTGCGCATTCTATTTATATAAAGAATACCACT
66 CATTAGCACTGGTATGATCGCACCCGTCAATTCTAGCGCATTCTATTTATATAAAGGCTACCCCT
* * *
27409713 TATCGCACTTGCGCCTCGAATTTGAATTCAAATTTGACCAAATAACGTTTCGAGTGATTTATTTC
131 TATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTATTTC
* * * * *
27409778 GTAAATAAATAACTAGTTAAACGATAAGGTATAAAAAAAATTACATGAGATATAAAATAGGAGAG
196 GTAAATAACTAATTAATTAAACAATAA-GTATAAAAAAAATTACATGAGATATAAAATAGGAGGG
27409843 GTGCAACACGAGGACTTTCCAGGAGG
260 GTGCAACACGAGGACTTTCCAGGAGG
* * * * *
27409869 TCACCCATCCTAGTACTACTCTCGCCCAAGTACGCTTAACTACAGAGTTCTAATGGGATCTGGTG
1 TCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTG
* *
27409934 CATTAGCACTGGTATGATCGCACCCG-CAAATTCTTGCG-ATTCTATTTATATAAAGGCTACTCC
66 CATTAGCACTGGTATGATCGCACCCGTC-AATTCTAGCGCATTCTATTTATATAAAGGCTACCCC
* * * * *
27409997 TTATCGTA-TTCGCACCTTGAATTTGAATTCAAATTTGACCAAATAACATTTCGAGTGATTTA
130 TTATCGCACTT-GCGCCTCGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTA
27410059 AAATGAGGAC
Statistics
Matches: 646, Mismatches: 106, Indels: 24
0.83 0.14 0.03
Matches are distributed among these distances:
283 2 0.00
284 5 0.01
285 78 0.12
286 387 0.60
287 2 0.00
288 5 0.01
289 166 0.26
290 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (285 bp):
TCACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTG
CATTAGCACTGGTATGATCGCACCCGTCAATTCTAGCGCATTCTATTTATATAAAGGCTACCCCT
TATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACATTTCAAGTGATTTATTTC
GTAAATAACTAATTAATTAAACAATAAGTATAAAAAAAATTACATGAGATATAAAATAGGAGGGG
TGCAACACGAGGACTTTCCAGGAGG
Found at i:27410710 original size:288 final size:287
Alignment explanation
Indices: 27410083--27412712 Score: 3689
Period size: 286 Copynumber: 9.2 Consensus size: 287
27410073 CATGAGGTCA
* * * * *
27410083 CCCATGCATGCTTAACTGTAGAGTTCTGATGGGATCCGGTGCATTAGTGTTGGTATGATTGCACC
1 CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
* *
27410148 CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCACTTAT--CACTGGCGCCTCGAATTTG
66 CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
* * *
27410211 AATTTAAATTCGACTAAATAATGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTGAACGA
131 AATTTAAATTCGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
* * *
27410276 TGAGATAT-TAAAAAAATTACATGAGATATAAAATAGGCGGGGTGCAACACGAGGACTTCACAGG
196 TGAGATATAAAAAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGG
27410340 AGGTCACCCATCCTAGTACTACTCTCG
261 AGGTCACCCATCCTAGTACTACTCTCG
* * * * *
27410367 CCCAAGCTCGCTTAGCTGCGGAGTTCTGATAGGATCCGGTGCATTAGTACTGGTATGATCGCACC
1 CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
* *
27410432 CATCAATTCTTGTGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
66 CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
* * * * * * *
27410497 AGTTCAAATTCGACCAAATAATGTTTAGAGTGATTTATTTCATAAATAAATAATTAGTAAAACGA
131 AATTTAAATTCGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
* *
27410562 TGAGATATAAAAAAAAATTTACATGAGTTATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAA
196 TGAGATATAAAAAAAAA-TTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAG
* *
27410627 AAGGTCACCCATCCTAGTACTACTCTTG
260 GAGGTCACCCATCCTAGTACTACTCTCG
* * * * *
27410655 CCCAATCACTCTTAACTGCAGAGTTCTGATGGGATCCAGTTCATTAGTGCTGGTATTATCGCACC
1 CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
* * * * *
27410720 CGCCAATTCTTGTGCGTTCTGTTTATATAAAGGCTACCCCTTATCGCACTAGCGCCTCGAATTTG
66 CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
* * * *
27410785 AATTCAAAATCAACCAAATAACGTTTCGAGTGATTTATTTTC-TACATAACTAATTAGTTAAACG
131 AATTTAAATTCGACCAAATAACGTTTCGAGTGATTTA-TTTCGTAAATAACTAATTAGTTAAACG
* * *
27410849 ATGAGATAT-AAAAAAAGTTATATGAGATATAAAATAGGAGGAGTGCAACACGAGGACTTCCCAG
195 ATGAGATATAAAAAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAG
* *
27410913 GAGGTCACCCATCCAAGTACTACTCTTG
260 GAGGTCACCCATCCTAGTACTACTCTCG
* * * *
27410941 CCCAAGCACGCTTAATTGCAGAGTTCTGATGGGATCCTGTGCAGTAGTGCTGGTACGATCGCACC
1 CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
* * * *
27411006 TGTTAATTCTTGCGCATTCTATTTGTATAAAGGCTACCCCTTATCGCAATTGCGCCTCGAATTTG
66 CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
* * *
27411071 AATTTAAATTCGACCAAATAACGTTTTGAGTGATTTATTTTGTAAATAACTAATTTGTTAAACGA
131 AATTTAAATTCGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
*
27411136 TGAGATATAAAAGAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACATGAGGACTTCCCAG
196 TGAGATATAAAA-AAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAG
*
27411201 GAGGTCACCCATCCTAGTACTACACTCG
260 GAGGTCACCCATCCTAGTACTACTCTCG
* * * * * * *
27411229 CCCAAGCACACTTGACTACGGACTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGAAT-GTAC
1 CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG-ATCGCAC
* * * *
27411293 CCGTCAATTCTTGTGGATTCTGTTTATATAAAGGCTACCCCTTATCGCACTTGTGCCTCGAATTT
65 CCGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTT
* *
27411358 GAATTTAAATTCGTCCAAATAACGTTTCGAGTGATTTATTTCGTAAATAGCTAATTAGTTAAACG
130 GAATTTAAATTCGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACG
* * *
27411423 ATGAGATAT-AAAAAAAATTACATGAGATATAAAAAAGGAGGAGTGCAACACGAGGACTTCCTAG
195 ATGAGATATAAAAAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAG
27411487 GAGGTCACCCATCCTAGTACTACTCTCG
260 GAGGTCACCCATCCTAGTACTACTCTCG
* * * * * * * * *
27411515 CCCAAGCACGCTTACCGGTAGAGTTCTAATGGGATTCGGTGCATTTGGGCTGATATGATCGCACT
1 CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
* *
27411580 CGTCAATTGTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTG
66 CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
* * *
27411645 AATTTAAATTCGGCAAAATAACGTTTCGAGTGATTTATATCGTAAATAACTAATTAGTTAAACGA
131 AATTTAAATTCGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
* * *
27411710 TAAGATATATAAAAAAAATTACATGAGATATAAAAATAGGAAGGGGTGCAACAGGAGAACTTCCC
196 TGAGATATA-AAAAAAAATTACATGAGATAT-AAAATAGG-AGGGGTGCAACACGAGGACTTCCC
* * *
27411775 AGGAGGTTACCCATCCTTGTACTACACTCG
258 AGGAGGTCACCCATCCTAGTACTACTCTCG
* * * * * * *
27411805 CCCAAGCACACTTAACTGCGGAGTTTTGATGGGATCCGATGTATTAGTGCTGGTATGACCCCACC
1 CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
* * * ** *
27411870 CGTCTATTCTTGCGCATTCTATTTATATAAAGGCTACCACTTATCACACTTGTACCTCGACTTTG
66 CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
* * * * *
27411935 AATTTACATTCGAACAAATAACTTTTCGAGTGATTTATTTCATAAATAACTAATTAGTTAAACAA
131 AATTTAAATTCGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
* * * *
27412000 TGTGATAT--AAAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGAATTTCCTAGG
196 TGAGATATAAAAAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGG
*** *
27412063 AGGTCACATTTCCTAGTACTACTCTCA
261 AGGTCACCCATCCTAGTACTACTCTCG
** * *
27412090 CCCAAGCACGCTTAACTGTGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAAC
1 CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
27412155 CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
66 CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
* * * * * * *
27412220 AATTTAAGTTCTACGAAATAACATTTCGAGTAATTTGTTTTGTAAATAACTAATTAGTTAAACGA
131 AATTTAAATTCGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
*
27412285 TGAGATATAAAAAAAAACTACATGAGATA-AAAACTAGGAGGGGTGCAACACGAGGACTTCCCAG
196 TGAGATATAAAAAAAAATTACATGAGATATAAAA-TAGGAGGGGTGCAACACGAGGACTTCCCAG
*
27412349 GAGGTCACCCAGCCTAGTACTACTCTCG
260 GAGGTCACCCATCCTAGTACTACTCTCG
* * * *
27412377 CCCAAGCACGTTTAATTGCAGAGTTCTGATGGGATCCGGTGCAGTAGTGCTGGTATGATCGCACG
1 CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
* * * *
27412442 TGTTAATTCTTGCGCATTCTATTTACATAAAGGCTACCCTTTATCGCACTTGCGCCTCGAATTTG
66 CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
* * *
27412507 AATTTAAATTTGACCAAATAATGTTTCGAGTGATTTATTTCGTTAATAACTAATTAGTTAAACGA
131 AATTTAAATTCGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
*
27412572 TGAGATATATAAAAAAAAGTTACATGATATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCA
196 TGAGATATA-AAAAAAAA-TTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCA
27412637 GGAGGTCA-CCATCCTAGTACTACTCTCG
259 GGAGGTCACCCATCCTAGTACTACTCTCG
* * * * * *
27412665 CCCAATCACCCTTAACTGCGGAGTTCTAATGGGATCCGTTGCGTTAGT
1 CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGT
27412713 TCTATTTATA
Statistics
Matches: 2060, Mismatches: 266, Indels: 36
0.87 0.11 0.02
Matches are distributed among these distances:
284 96 0.05
285 225 0.11
286 589 0.29
287 290 0.14
288 580 0.28
289 60 0.03
290 220 0.11
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (287 bp):
CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACC
CGTCAATTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTG
AATTTAAATTCGACCAAATAACGTTTCGAGTGATTTATTTCGTAAATAACTAATTAGTTAAACGA
TGAGATATAAAAAAAAATTACATGAGATATAAAATAGGAGGGGTGCAACACGAGGACTTCCCAGG
AGGTCACCCATCCTAGTACTACTCTCG
Done.