Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 103 of 349
Found at i:32212857 original size:20 final size:20
Alignment explanation
Indices: 32212818--32212857 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32212808 AAACTTCTTC
* *
32212818 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
32212838 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
32212858 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:32212971 original size:23 final size:24
Alignment explanation
Indices: 32212930--32212974 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
32212920 TTTGCTCTTC
* *
32212930 TAGCATGAACTTGTTTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
32212954 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
32212975 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:32213175 original size:55 final size:53
Alignment explanation
Indices: 32213040--32213226 Score: 155
Period size: 55 Copynumber: 3.5 Consensus size: 53
32213030 GATACACGGG
* * *
32213040 TGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGTCATGCCT
1 TGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCACGCCT
* * * * * **
32213093 TGGCATGGTCTTACAT-AGGA-CCTTTGCCTTGTAGTAACTTATCAATGCCACGTTT
1 TGACATGGTCTTACATGA-TATCC-TTGCCTTAT-G-AACTCACCAATGCCACGCCT
* * *
32213148 TGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTGCCATGCCT
1 TGACATGGTCTTACATGATATCCTTGCCTTATG-AA-CTCACCAA-TGCCACGCCT
* *
32213203 TGGCATGGTCTTACATGGTATCCT
1 TGACATGGTCTTACATGATATCCT
32213227 GAAACCCTAA
Statistics
Matches: 104, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
52 2 0.02
53 27 0.26
54 8 0.08
55 64 0.62
56 3 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCACGCCT
Found at i:32215734 original size:16 final size:16
Alignment explanation
Indices: 32215715--32215745 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32215705 TGGTAAAAAC
*
32215715 CGAATTGTCGAAAAGT
1 CGAAATGTCGAAAAGT
32215731 CGAAATGTCGAAAAG
1 CGAAATGTCGAAAAG
32215746 CTAAAAGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.19
Consensus pattern (16 bp):
CGAAATGTCGAAAAGT
Found at i:32215999 original size:29 final size:28
Alignment explanation
Indices: 32215958--32216016 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
32215948 GTGAGAATGA
32215958 ATATAATGTGATTTGGGCCTAAAGGGCC
1 ATATAATGTGATTTGGGCCTAAAGGGCC
* *
32215986 ATATAAATGTGATTTGGGTCTAATGGGCC
1 ATAT-AATGTGATTTGGGCCTAAAGGGCC
32216015 AT
1 AT
32216017 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 4 0.14
29 24 0.86
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (28 bp):
ATATAATGTGATTTGGGCCTAAAGGGCC
Found at i:32218776 original size:3 final size:3
Alignment explanation
Indices: 32218768--32218798 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
32218758 ATATTTTTAC
32218768 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
32218799 ATTTTATCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:32219028 original size:15 final size:14
Alignment explanation
Indices: 32218967--32219041 Score: 55
Period size: 15 Copynumber: 5.2 Consensus size: 14
32218957 ATAATAAATA
*
32218967 AAAGAAAGAAAAAC
1 AAAGAAAGAAAAAG
* *
32218981 AAGAAAAAGAAACAG
1 AA-AGAAAGAAAAAG
*
32218996 AGAAGAAACGAAATAG
1 A-AAGAAA-GAAAAAG
32219012 AAAGAAAGAAAGAAG
1 AAAGAAAGAAA-AAG
*
32219027 AAA-AAA-AATAAG
1 AAAGAAAGAAAAAG
32219039 AAA
1 AAA
32219042 AAGGAGAAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
12 6 0.12
13 2 0.04
14 9 0.18
15 25 0.50
16 8 0.16
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.03
Consensus pattern (14 bp):
AAAGAAAGAAAAAG
Found at i:32219035 original size:26 final size:26
Alignment explanation
Indices: 32218967--32219041 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
32218957 ATAATAAATA
* * *
32218967 AAAGAAAGAAAAACAAGAAAAAGAAAC
1 AAAG-AAGAAAAAAAATAGAAAGAAAC
* ** *
32218994 AGAGAAGAAACGAAATAGAAAGAAAG
1 AAAGAAGAAAAAAAATAGAAAGAAAC
32219020 AAAGAAGAAAAAAAATAAGAAA
1 AAAGAAGAAAAAAAAT-AGAAA
32219042 AAGGAGAAAT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 29 0.78
27 8 0.22
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.03
Consensus pattern (26 bp):
AAAGAAGAAAAAAAATAGAAAGAAAC
Found at i:32220213 original size:26 final size:26
Alignment explanation
Indices: 32220165--32220214 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
32220155 AGAAAAATCA
* *
32220165 AATGAAATTGATAAATTGAATTATTG
1 AATGAAATTGAGAAAGTGAATTATTG
32220191 AATGAAA-TGAGAAAGTGATATTAT
1 AATGAAATTGAGAAAGTGA-ATTAT
32220215 AAGATGAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.34
Consensus pattern (26 bp):
AATGAAATTGAGAAAGTGAATTATTG
Found at i:32222749 original size:49 final size:49
Alignment explanation
Indices: 32222645--32222772 Score: 136
Period size: 49 Copynumber: 2.6 Consensus size: 49
32222635 GTTAAGATGC
*
32222645 CGATGCCATGTCCCAGACATGGTCTTACA-CTGGATTTCATATAGCGAGG
1 CGATGCCATGTCCCAGACA-GGTCTTACATCTGGATCTCATATAGCGAGG
* * *
32222694 CTGATGCCATGTCCCAGACAGGTCTTACATC-GGCTCTCATTTATCG-GTG
1 C-GATGCCATGTCCCAGACAGGTCTTACATCTGGATCTCATATAGCGAG-G
* * *
32222743 TCGATGCCATGTCTCATACAGGCCTTACAT
1 -CGATGCCATGTCCCAGACAGGTCTTACAT
32222773 TAGCTTGTCT
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
48 1 0.01
49 47 0.69
50 20 0.29
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACATCTGGATCTCATATAGCGAGG
Found at i:32222818 original size:48 final size:48
Alignment explanation
Indices: 32222766--32222963 Score: 157
Period size: 48 Copynumber: 4.2 Consensus size: 48
32222756 TCATACAGGC
*
32222766 CTTACATTAGCTTGTCTACTGCGAGGCTAATGCATGTCCCAGACATGT
1 CTTACACTAGCTTGTCTACTGCGAGGCTAATGCATGTCCCAGACATGT
*
32222814 CTTACACTAGCTCTTGTCTCACTGC----C-AATGCATGTCCTAGACATGT
1 CTTACACTAG--CTTGTCT-ACTGCGAGGCTAATGCATGTCCCAGACATGT
* *** *
32222860 CTTACACTGGCTTAAATATCT-CGAGGCCT-ATGCATTTCCCAGACATGT
1 CTTACACTAGCTTGTCTA-CTGCGAGG-CTAATGCATGTCCCAGACATGT
* * * *
32222908 CTTACACTAGC-TCTC-A-TTCTGTGGCTGAT-CATGTCCCAGACATGT
1 CTTACACTAGCTTGTCTACTGC-GAGGCTAATGCATGTCCCAGACATGT
*
32222953 CTTACAGTAGC
1 CTTACACTAGC
32222964 ACACATATCA
Statistics
Matches: 122, Mismatches: 15, Indels: 29
0.73 0.09 0.17
Matches are distributed among these distances:
43 2 0.02
44 7 0.06
45 28 0.23
46 34 0.28
47 2 0.02
48 37 0.30
50 7 0.06
51 5 0.04
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.32
Consensus pattern (48 bp):
CTTACACTAGCTTGTCTACTGCGAGGCTAATGCATGTCCCAGACATGT
Found at i:32222856 original size:46 final size:47
Alignment explanation
Indices: 32222787--32222963 Score: 177
Period size: 46 Copynumber: 3.8 Consensus size: 47
32222777 TTGTCTACTG
* *
32222787 CGAGGCTAATGCATGTCCCAGACATGTCTTACACTAGCTCT-TGTCT
1 CGAGGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTATATCT
* * *
32222833 C-ACTGCCAATGCATGTCCTAGACATGTCTTACACTGGCT-TAAATATCT
1 CGA-GGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCT--ATATCT
* *
32222881 CGAGGCCTATGCATTTCCCAGACATGTCTTACACTAGCTCTCAT-TCT
1 CGAGGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCT-ATATCT
* ** *
32222928 -GTGGCTGAT-CATGTCCCAGACATGTCTTACAGTAGC
1 CGAGGCCAATGCATGTCCCAGACATGTCTTACACTAGC
32222964 ACACATATCA
Statistics
Matches: 109, Mismatches: 16, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
45 27 0.25
46 39 0.36
47 3 0.03
48 38 0.35
49 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (47 bp):
CGAGGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCTATATCT
Found at i:32237641 original size:13 final size:13
Alignment explanation
Indices: 32237623--32237647 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32237613 GTAAATTGAT
32237623 AATTAAACAAAAA
1 AATTAAACAAAAA
32237636 AATTAAACAAAA
1 AATTAAACAAAA
32237648 CAAAATTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (13 bp):
AATTAAACAAAAA
Found at i:32237794 original size:17 final size:18
Alignment explanation
Indices: 32237759--32237795 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
32237749 GATATGAAAT
32237759 ATTTGTTCGTTTTTAGTG
1 ATTTGTTCGTTTTTAGTG
*
32237777 ATTTTTTCGTTTTT-GTG
1 ATTTGTTCGTTTTTAGTG
32237794 AT
1 AT
32237796 CGTTTTAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.11, C:0.05, G:0.19, T:0.65
Consensus pattern (18 bp):
ATTTGTTCGTTTTTAGTG
Found at i:32237801 original size:18 final size:18
Alignment explanation
Indices: 32237764--32237801 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
32237754 GAAATATTTG
*
32237764 TTCGTTTTTAGTGATTTT
1 TTCGTTTTTAGTGATGTT
32237782 TTCGTTTTT-GTGATCGTT
1 TTCGTTTTTAGTGAT-GTT
32237800 TT
1 TT
32237802 AGCTTAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.08, C:0.08, G:0.18, T:0.66
Consensus pattern (18 bp):
TTCGTTTTTAGTGATGTT
Found at i:32238482 original size:45 final size:43
Alignment explanation
Indices: 32238418--32238542 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 43
32238408 TTGAGGAATA
* *
32238418 AGAAAGACCATGGTTGAAAGATATCATGGCATTATACCCAAAAT
1 AGAAAGACCATAGTTGAAAGATATCATGGCATTA-AACCAAAAT
* *
32238462 GAGAAAGACTATAGTTGAAAGATA-CTATGGCATTAAACCAGAAT
1 -AGAAAGACCATAGTTGAAAGATATC-ATGGCATTAAACCAAAAT
* * * *
32238506 AGGTAAGACCCTAGTTCAAAGATATTATGGCATTAAA
1 A-GAAAGACCATAGTTGAAAGATATCATGGCATTAAA
32238543 TTTGAATGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
43 1 0.01
44 37 0.54
45 30 0.44
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.24
Consensus pattern (43 bp):
AGAAAGACCATAGTTGAAAGATATCATGGCATTAAACCAAAAT
Found at i:32240234 original size:35 final size:35
Alignment explanation
Indices: 32240188--32240259 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
32240178 ATGAACTTAC
32240188 ATGATGGAACTACCCCAATGAAACTTTGTAAATGT
1 ATGATGGAACTACCCCAATGAAACTTTGTAAATGT
32240223 ATGATGGAACTACCCCAATGAAACTTTGTAAATGT
1 ATGATGGAACTACCCCAATGAAACTTTGTAAATGT
32240258 AT
1 AT
32240260 CATACACATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (35 bp):
ATGATGGAACTACCCCAATGAAACTTTGTAAATGT
Found at i:32246867 original size:16 final size:17
Alignment explanation
Indices: 32246835--32246867 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
32246825 TGAATTCTAG
*
32246835 TAGCTATAAGGATTCAA
1 TAGCTATAAGAATTCAA
32246852 TAGCTAT-AGAATTCAA
1 TAGCTATAAGAATTCAA
32246868 GCCTAGAGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
TAGCTATAAGAATTCAA
Found at i:32250115 original size:18 final size:17
Alignment explanation
Indices: 32250094--32250136 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
32250084 AAATAATAAT
*
32250094 AATATATAAAAAACTTGA
1 AATATATAAAAAAATT-A
32250112 AATATA-AAAAAAATTA
1 AATATATAAAAAAATTA
*
32250128 AAGATATAA
1 AATATATAA
32250137 GTATAAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 10 0.45
18 6 0.27
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (17 bp):
AATATATAAAAAAATTA
Found at i:32250557 original size:30 final size:30
Alignment explanation
Indices: 32250521--32250578 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
32250511 ATGTGAGATC
*
32250521 CCACACACCCGTATGTCCAGGCCGTGTGCT
1 CCACACACCCGTATGTCCAGGCCATGTGCT
*
32250551 CCACACACCCGTGTGTCCAGGCCATGTG
1 CCACACACCCGTATGTCCAGGCCATGTG
32250579 GGTAAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.17, C:0.40, G:0.24, T:0.19
Consensus pattern (30 bp):
CCACACACCCGTATGTCCAGGCCATGTGCT
Found at i:32257768 original size:162 final size:162
Alignment explanation
Indices: 32257501--32257821 Score: 615
Period size: 162 Copynumber: 2.0 Consensus size: 162
32257491 TAAACCCCTC
32257501 GGTAAGGTTGTGATTGAGTAAGTTTGACTATGAGATTTATCATGACATTTATGTTAATTTACTTC
1 GGTAAGGTTGTGATTGAGTAAGTTTGACTATGAGATTTATCATGACATTTATGTTAATTTACTTC
*
32257566 ATGTTAATTGTATGTTAAATGTAAGTTTATAATTCTTATTATTTGCATGGGAACTTGCTAAGCTA
66 ATGTTAATTGTATGTTAAATGTAAGTTTATAATTCTTATTATTTGCATGGGAACTTACTAAGCTA
32257631 TATAGTTTACTCCCATTTCTTTTCCCTTTCTT
131 TATAGTTTACTCCCATTTCTTTTCCCTTTCTT
32257663 GGTAAGGTTGTGATTGAGTAAGTTTGACTATGAGATTTATCATGACATTTATGTTAATTTACTTC
1 GGTAAGGTTGTGATTGAGTAAGTTTGACTATGAGATTTATCATGACATTTATGTTAATTTACTTC
*
32257728 ATGTTAATTGTATGTTAAATGTGAGTTTATAATTCTTATTATTTGCATGGGAACTTACTAAGCTA
66 ATGTTAATTGTATGTTAAATGTAAGTTTATAATTCTTATTATTTGCATGGGAACTTACTAAGCTA
*
32257793 TATAGTTTACTCCCCTTTCTTTTCCCTTT
131 TATAGTTTACTCCCATTTCTTTTCCCTTT
32257822 TCTTATAGTG
Statistics
Matches: 156, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 156 1.00
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (162 bp):
GGTAAGGTTGTGATTGAGTAAGTTTGACTATGAGATTTATCATGACATTTATGTTAATTTACTTC
ATGTTAATTGTATGTTAAATGTAAGTTTATAATTCTTATTATTTGCATGGGAACTTACTAAGCTA
TATAGTTTACTCCCATTTCTTTTCCCTTTCTT
Found at i:32263170 original size:18 final size:18
Alignment explanation
Indices: 32263119--32263171 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
32263109 TTATGGATTA
* *
32263119 TTTTTTCTAATTTTTATG
1 TTTTTTATAAATTTTATG
* *
32263137 GTTTTTAGTAAA-TTTATT
1 TTTTTTA-TAAATTTTATG
32263155 TTTTTTATAAATTTTAT
1 TTTTTTATAAATTTTAT
32263172 AAAATGCTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 4 0.14
18 21 0.75
19 3 0.11
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.68
Consensus pattern (18 bp):
TTTTTTATAAATTTTATG
Found at i:32263259 original size:18 final size:17
Alignment explanation
Indices: 32263226--32263270 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
32263216 TCTAATCATC
*
32263226 TTTTATAATGTTTATAT
1 TTTTATAATGTTTATAA
*
32263243 TTTTATATTGTTTTATAA
1 TTTTATAATG-TTTATAA
*
32263261 TTTTAAAATG
1 TTTTATAATG
32263271 AATGTAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (17 bp):
TTTTATAATGTTTATAA
Found at i:32263510 original size:13 final size:13
Alignment explanation
Indices: 32263492--32263519 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32263482 ACTTCATCGT
32263492 TATTATTAATTAC
1 TATTATTAATTAC
32263505 TATTATTAATTAC
1 TATTATTAATTAC
32263518 TA
1 TA
32263520 ATGGCTAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (13 bp):
TATTATTAATTAC
Found at i:32263581 original size:26 final size:26
Alignment explanation
Indices: 32263545--32263600 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
32263535 TAAATGTTTT
32263545 ATTTGACTAATTTTATTAGTTCAAAG
1 ATTTGACTAATTTTATTAGTTCAAAG
32263571 ATTTGACTAATTTTATTAGTTCAAAG
1 ATTTGACTAATTTTATTAGTTCAAAG
32263597 ATTT
1 ATTT
32263601 AATTTGATGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.48
Consensus pattern (26 bp):
ATTTGACTAATTTTATTAGTTCAAAG
Found at i:32265188 original size:15 final size:15
Alignment explanation
Indices: 32265168--32265208 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
32265158 GTAAAGAGAA
32265168 TAAATTCCA-AAAAAT
1 TAAATT-CATAAAAAT
32265183 TAAATT-ATAAAAAT
1 TAAATTCATAAAAAT
32265197 TAAATTCTATAA
1 TAAATTC-ATAA
32265209 CTAAGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 1 0.04
14 12 0.52
15 6 0.26
16 4 0.17
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (15 bp):
TAAATTCATAAAAAT
Found at i:32265665 original size:9 final size:9
Alignment explanation
Indices: 32265641--32265713 Score: 51
Period size: 9 Copynumber: 7.9 Consensus size: 9
32265631 AAAATTATTA
*
32265641 TTTTAGAAAA
1 TTTTA-AAAT
32265651 TTTTAAAAT
1 TTTTAAAAT
32265660 TTTTAAAAT
1 TTTTAAAAT
*
32265669 ATATATAAAA-
1 -T-TTTAAAAT
*
32265679 -GTTAAAAT
1 TTTTAAAAT
32265687 TTTTATAAAT
1 TTTTA-AAAT
*
32265697 ATTTAAAAT
1 TTTTAAAAT
*
32265706 TCTTAAAA
1 TTTTAAAA
32265714 ATTATTTTGA
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
7 5 0.10
9 25 0.50
10 14 0.28
11 6 0.12
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:32265711 original size:28 final size:28
Alignment explanation
Indices: 32265647--32265713 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
32265637 ATTATTTTAG
32265647 AAAATTTTAAAATTTTTAAAATATATAT
1 AAAATTTTAAAATTTTTAAAATATATAT
*
32265675 AAAA-GTTAAAATTTTTATAAATAT-T-T
1 AAAATTTTAAAATTTTTA-AAATATATAT
32265701 AAAATTCTTAAAA
1 AAAATT-TTAAAA
32265714 ATTATTTTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 5 0.15
27 13 0.38
28 16 0.47
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (28 bp):
AAAATTTTAAAATTTTTAAAATATATAT
Found at i:32270057 original size:19 final size:19
Alignment explanation
Indices: 32270013--32270049 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
32270003 AATAAAAATA
32270013 AAAAATTGAATGTTATTTG
1 AAAAATTGAATGTTATTTG
32270032 ATAAAATT-AATGTTATTT
1 A-AAAATTGAATGTTATTT
32270050 TTAAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (19 bp):
AAAAATTGAATGTTATTTG
Found at i:32270063 original size:21 final size:19
Alignment explanation
Indices: 32270011--32270063 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
32270001 TTAATAAAAA
32270011 TAAAAAATTGAATGTTATTT
1 TAAAAAATT-AATGTTATTT
* *
32270031 GATAAAATTAATGTTATTTT
1 TAAAAAATTAATGTTA-TTT
32270051 TAAAAATATTAAT
1 TAAAAA-ATTAAT
32270064 ATATTATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 7 0.26
20 14 0.52
21 6 0.22
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (19 bp):
TAAAAAATTAATGTTATTT
Found at i:32273903 original size:88 final size:88
Alignment explanation
Indices: 32273754--32273929 Score: 253
Period size: 88 Copynumber: 2.0 Consensus size: 88
32273744 TTTTATTCGA
* * * * **
32273754 TGCTAAGTCGTTATGTCCGTTGCTTTCATCATTCCGAGCTCAAACAAACCAGGGCGTAACTATAG
1 TGCTAAGTCGTTATGTCCGGTGCATTCATCATTCCGAGCTCAAACAAACAAGGACACAACTATAG
32273819 ATGGAAACGCGGCGGATATAATT
66 ATGGAAACGCGGCGGATATAATT
* * *
32273842 TGCTAAGTCGTTATGTCCGGTGCATTCGTCATTCTGAGCTCAAAGAAACAAGGACACAACTATAG
1 TGCTAAGTCGTTATGTCCGGTGCATTCATCATTCCGAGCTCAAACAAACAAGGACACAACTATAG
* *
32273907 ATGGAAATGTGGCGGATATAATT
66 ATGGAAACGCGGCGGATATAATT
32273930 CTTGTTATTA
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 77 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (88 bp):
TGCTAAGTCGTTATGTCCGGTGCATTCATCATTCCGAGCTCAAACAAACAAGGACACAACTATAG
ATGGAAACGCGGCGGATATAATT
Found at i:32279214 original size:100 final size:100
Alignment explanation
Indices: 32279041--32279248 Score: 398
Period size: 100 Copynumber: 2.1 Consensus size: 100
32279031 AAAATTAATG
* *
32279041 TTTTTTAGTACAACGAGTGTCACTTTTTTGTATTACCTAATGCATAAGATTATATAATACTAGTA
1 TTTTTTGGTACAACGAATGTCACTTTTTTGTATTACCTAATGCATAAGATTATATAATACTAGTA
32279106 TAATACCCAAGTCATACATTGTGTTAGATAATTAT
66 TAATACCCAAGTCATACATTGTGTTAGATAATTAT
32279141 TTTTTTGGTACAACGAATGTCACTTTTTTGTATTACCTAATGCATAAGATTATATAATACTAGTA
1 TTTTTTGGTACAACGAATGTCACTTTTTTGTATTACCTAATGCATAAGATTATATAATACTAGTA
32279206 TAATACCCAAGTCATACATTGTGTTAGATAATTAT
66 TAATACCCAAGTCATACATTGTGTTAGATAATTAT
32279241 TTTTTTGG
1 TTTTTTGG
32279249 AATAATATTT
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 106 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (100 bp):
TTTTTTGGTACAACGAATGTCACTTTTTTGTATTACCTAATGCATAAGATTATATAATACTAGTA
TAATACCCAAGTCATACATTGTGTTAGATAATTAT
Found at i:32279437 original size:22 final size:23
Alignment explanation
Indices: 32279396--32279446 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 23
32279386 TCTTAGCGGA
32279396 ATTATAGAGTAAAAGATTTTGAT
1 ATTATAGAGTAAAAGATTTTGAT
* *
32279419 ATTATA-AGTTAAAGTTTTTGAT
1 ATTATAGAGTAAAAGATTTTGAT
32279441 ATTATA
1 ATTATA
32279447 TTTATATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 20 0.77
23 6 0.23
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (23 bp):
ATTATAGAGTAAAAGATTTTGAT
Found at i:32292943 original size:24 final size:24
Alignment explanation
Indices: 32292911--32292962 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
32292901 GATCAATATC
* *
32292911 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
32292935 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATACT
32292959 AAAT
1 AAAT
32292963 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:32297942 original size:17 final size:17
Alignment explanation
Indices: 32297922--32297959 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
32297912 TTAAGAAATT
* *
32297922 AAACAATTTAAGTTACC
1 AAACAATTCAAGTTAAC
32297939 AAACAATTCAAGTTAAC
1 AAACAATTCAAGTTAAC
32297956 AAAC
1 AAAC
32297960 TTGAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.18, G:0.05, T:0.24
Consensus pattern (17 bp):
AAACAATTCAAGTTAAC
Found at i:32301178 original size:20 final size:20
Alignment explanation
Indices: 32301141--32301179 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32301131 ATAGAGACAC
* * *
32301141 CGAAGTGTATACAGGGGCAA
1 CGAAGTGCAAACAAGGGCAA
32301161 CGAAGTGCAAACAAGGGCA
1 CGAAGTGCAAACAAGGGCA
32301180 CTGAAGGGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.18, G:0.33, T:0.10
Consensus pattern (20 bp):
CGAAGTGCAAACAAGGGCAA
Found at i:32306149 original size:19 final size:18
Alignment explanation
Indices: 32306125--32306160 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
32306115 GCAAATGAAT
*
32306125 CATTTCTCATTTTCATTTC
1 CATTTCT-ATTTCCATTTC
32306144 CATTTCTATTTCCATTT
1 CATTTCTATTTCCATTT
32306161 TGAGAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.17, C:0.25, G:0.00, T:0.58
Consensus pattern (18 bp):
CATTTCTATTTCCATTTC
Found at i:32306154 original size:12 final size:12
Alignment explanation
Indices: 32306124--32306161 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
32306114 TGCAAATGAA
32306124 TCATTTCTCATTT
1 TCATTTC-CATTT
32306137 TCATTTCCA-TT
1 TCATTTCCATTT
32306148 TCTATTTCCATTT
1 TC-ATTTCCATTT
32306161 T
1 T
32306162 GAGAAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 4 0.17
12 9 0.39
13 10 0.43
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.61
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:32311021 original size:17 final size:18
Alignment explanation
Indices: 32310989--32311023 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
32310979 CCATGTGGCC
*
32310989 TGCCCGTGTGGGCCCACA
1 TGCCCATGTGGGCCCACA
32311007 TGCCCATGT-GGCCCACA
1 TGCCCATGTGGGCCCACA
32311024 CGACCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.40, G:0.29, T:0.17
Consensus pattern (18 bp):
TGCCCATGTGGGCCCACA
Found at i:32324344 original size:29 final size:29
Alignment explanation
Indices: 32324299--32324361 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
32324289 AGCTTGGAAC
*
32324299 TGATTCGGGCCAGATGGGCCATATGAATG
1 TGATTCGGGCCAGATGGGCCATACGAATG
*
32324328 TGATTTGGGCCTA-ATGGGCCATACGAATG
1 TGATTCGGGCC-AGATGGGCCATACGAATG
32324357 TGATT
1 TGATT
32324362 GGACTTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 30 0.97
30 1 0.03
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.29
Consensus pattern (29 bp):
TGATTCGGGCCAGATGGGCCATACGAATG
Found at i:32328203 original size:29 final size:28
Alignment explanation
Indices: 32328138--32328204 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
32328128 ACATGGCTTG
* *
32328138 GAATTGATTTGGGCCAAATGGGCCATAT
1 GAATTGATTTGGGCCAAATGAGCCATAC
* *
32328166 GAACATGATTTGGGCCTAATGAGCCATAC
1 GAA-TTGATTTGGGCCAAATGAGCCATAC
32328195 GAATGTGATT
1 GAAT-TGATT
32328205 GGACTTATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (28 bp):
GAATTGATTTGGGCCAAATGAGCCATAC
Found at i:32332031 original size:29 final size:29
Alignment explanation
Indices: 32331990--32332056 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
32331980 ACATGGCTTG
32331990 GAAT-TGATTTGGGCCAAATGGGCCATAT
1 GAATGTGATTTGGGCCAAATGGGCCATAT
*
32332018 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCAAATGGGCCATAT
32332047 GAATGTGATT
1 GAATGTGATT
32332057 GGACTTATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 4 0.11
29 33 0.89
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.31
Consensus pattern (29 bp):
GAATGTGATTTGGGCCAAATGGGCCATAT
Found at i:32333385 original size:16 final size:17
Alignment explanation
Indices: 32333353--32333385 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32333343 TTTAAAGAAG
32333353 GGTTTTCAATGAAAACAA
1 GGTTTTCAA-GAAAACAA
32333371 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
32333386 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.27
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAA
Found at i:32334054 original size:198 final size:199
Alignment explanation
Indices: 32333709--32334103 Score: 711
Period size: 198 Copynumber: 2.0 Consensus size: 199
32333699 ATCATCTCAA
* *
32333709 GCTAAAGAAAATCTGAAGGCACTTGATGCTCAGCGTTCACTTGCTGACAAATAAAAAACTTTGAT
1 GCTAAAGAAAATCTGAAGGCACTAGATGCTCAGCATTCACTTGCTGACAAATAAAAAACTTTGAT
**
32333774 ACAAAATCAGAAATTTCTCATTTCATACTTGACCACCAATACGACTTCTTCAAATAATTGTACAT
66 ACAAAATCAGAAATTTCTCATTTCATACCCGACCACCAATACGACTTCTTCAAATAATTGTACAT
*
32333839 TTTGGTACTCTCCGGGTGAACAGATAAACTACTACTATGTGCCTCGTGCAAAATTTTCTGAATCA
131 TTTGGTACTCTCCGGGTGAACAGATAAACTACTACTATATGCCTCGTGCAAAATTTTCTGAATCA
32333904 ACAG
196 ACAG
* *
32333908 GCTAAA-AAAATCTGAAGGCTCTAGATGCTCAGCATTCACTTGCTGACAAATCAAAAACTTTGAT
1 GCTAAAGAAAATCTGAAGGCACTAGATGCTCAGCATTCACTTGCTGACAAATAAAAAACTTTGAT
*
32333972 ACAAAATCAGAAATTTCTCATTTCATACCCGACCACCAATACGACTTCTTCAAATCATTGTACAT
66 ACAAAATCAGAAATTTCTCATTTCATACCCGACCACCAATACGACTTCTTCAAATAATTGTACAT
32334037 TTTGGTACTCTCCGGGTGAACAGATAAACTACTACTATATGCCTCGTGCAAAATTTTCTGAATCA
131 TTTGGTACTCTCCGGGTGAACAGATAAACTACTACTATATGCCTCGTGCAAAATTTTCTGAATCA
32334102 AC
196 AC
32334104 TCTAGATTTT
Statistics
Matches: 188, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
198 182 0.97
199 6 0.03
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (199 bp):
GCTAAAGAAAATCTGAAGGCACTAGATGCTCAGCATTCACTTGCTGACAAATAAAAAACTTTGAT
ACAAAATCAGAAATTTCTCATTTCATACCCGACCACCAATACGACTTCTTCAAATAATTGTACAT
TTTGGTACTCTCCGGGTGAACAGATAAACTACTACTATATGCCTCGTGCAAAATTTTCTGAATCA
ACAG
Found at i:32338628 original size:93 final size:93
Alignment explanation
Indices: 32338517--32338688 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
32338507 GCCCATAAGT
* * *
32338517 GAACTCAGACTCAACTCAATGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTC-GGACGTTCGCATCCATAAGTGAAATCAGACTCAACTCA
32338581 ACGAGTTCGGATGCCAAGTTACATTTCAC
65 ACGAGTTCGGATGCCAAGTTACATTTCAC
* * * *
32338610 GAACTCAGACTCAACTCAACGAGTTCGGATGTTGGCATCCATAAGTGAAATTAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAAATCAGACTCAACTCAA
*
32338675 TGAGTTCGGATGCC
66 CGAGTTCGGATGCC
32338689 CAAATATCCG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAAATCAGACTCAACTCAA
CGAGTTCGGATGCCAAGTTACATTTCAC
Found at i:32346723 original size:85 final size:85
Alignment explanation
Indices: 32346580--32346758 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
32346570 GGCCGGCCAT
32346580 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACAAGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACAAGTTGGGGTAGTGCATTAT
32346645 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
32346665 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACAAGTTGGGGTAGTGCATTAT
32346730 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
32346750 GAGCATGGG
1 GAGCATGGG
32346759 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACAAGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:32348062 original size:79 final size:81
Alignment explanation
Indices: 32347926--32348108 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
32347916 TCGAATGATG
* *
32347926 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32347990 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
32348005 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
32348067 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
32348085 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
32348109 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:32348124 original size:40 final size:40
Alignment explanation
Indices: 32347927--32348110 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
32347917 CGAATGATGT
* * * *
32347927 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
32347967 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
32348007 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32348045 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32348086 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32348111 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32348132 original size:79 final size:79
Alignment explanation
Indices: 32347979--32348143 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
32347969 GGACTAAGAT
* **
32347979 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
32348044 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32348058 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
32348121 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32348137 CCGAAGG
1 CCGAAGG
32348144 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32354185 original size:85 final size:85
Alignment explanation
Indices: 32354042--32354220 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
32354032 GGCCGGCCAT
32354042 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCAGAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCAGAAACATGTTGGGGTAGTGCATTAT
32354107 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
32354127 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCAGAAACATGTTGGGGTAGTGCATTAT
32354192 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
32354212 GAGCATGGG
1 GAGCATGGG
32354221 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCAGAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:32355521 original size:79 final size:81
Alignment explanation
Indices: 32355385--32355567 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
32355375 TCGAATGATG
* *
32355385 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32355449 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
32355464 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
32355526 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
32355544 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
32355568 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:32355583 original size:40 final size:40
Alignment explanation
Indices: 32355386--32355569 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
32355376 CGAATGATGT
* * * *
32355386 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
32355426 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
32355466 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32355504 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32355545 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32355570 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32355591 original size:79 final size:79
Alignment explanation
Indices: 32355438--32355602 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
32355428 GGACTAAGAT
* **
32355438 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
32355503 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32355517 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
32355580 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32355596 CCGAAGG
1 CCGAAGG
32355603 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32358287 original size:47 final size:47
Alignment explanation
Indices: 32358233--32358426 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
32358223 TTAGGATTTT
** * *
32358233 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
32358280 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32358327 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
32358374 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32358421 ATGTGA
1 ATGTGA
32358427 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:32358308 original size:25 final size:25
Alignment explanation
Indices: 32358280--32358358 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
32358270 CGAATGGCCA
32358280 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAGCATGCATAT
* * *
32358305 ATGTGAT-AA-G-GCCGAATGGC-CA-
1 ATGTGATGAATGTG-AGCAT-GCATAT
32358327 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAGCATGCATAT
*
32358352 GTGTGAT
1 ATGTGAT
32358359 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 14 0.35
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAGCATGCATAT
Found at i:32358333 original size:22 final size:22
Alignment explanation
Indices: 32358262--32358333 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
32358252 GTATATATGA
32358262 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
32358284 GATGAATGTG-AGCAT-GCATATATGT
1 GAT-AA-G-GCCGAATGGC-CA-ATGT
32358309 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
32358331 GAT
1 GAT
32358334 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.32, C:0.14, G:0.31, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:32358382 original size:25 final size:25
Alignment explanation
Indices: 32358307--32358382 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
32358297 ATGCATATAT
32358307 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
32358332 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
32358354 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
32358379 GTGA
1 GTGA
32358383 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:32358460 original size:48 final size:48
Alignment explanation
Indices: 32358397--32358532 Score: 202
Period size: 50 Copynumber: 2.8 Consensus size: 48
32358387 GAACATGCAT
32358397 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
32358445 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
* *
32358495 ATATGTGGTAAAGGCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
32358533 GGCGATGTGT
Statistics
Matches: 79, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
47 1 0.01
48 33 0.42
49 4 0.05
50 40 0.51
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:32358548 original size:50 final size:49
Alignment explanation
Indices: 32358396--32358532 Score: 190
Period size: 48 Copynumber: 2.8 Consensus size: 49
32358386 TGAACATGCA
32358396 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA-TATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAGTATG
* *
32358444 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATAT-ATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATGTATGA-GAG-TATG
* *
32358494 TATATGTGGTAAAGGCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
32358533 GGCGATGTGT
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
47 2 0.03
48 38 0.49
50 37 0.47
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (49 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAGTATG
Found at i:32358786 original size:37 final size:37
Alignment explanation
Indices: 32358678--32358786 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
32358668 GGAAATATAT
*
32358678 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
32358715 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
32358752 TCCGAGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
32358787 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:32362867 original size:29 final size:29
Alignment explanation
Indices: 32362809--32362965 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
32362799 ATAGTAAGTC
*
32362809 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
32362837 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
32362866 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
32362895 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
32362923 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
32362952 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32362966 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:32362916 original size:57 final size:58
Alignment explanation
Indices: 32362809--32362965 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
32362799 ATAGTAAGTC
*
32362809 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
32362866 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
32362923 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
32362966 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:32370785 original size:29 final size:29
Alignment explanation
Indices: 32370727--32370883 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
32370717 ATAGTAAGTC
*
32370727 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
32370755 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
32370784 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
32370813 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
32370841 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
32370870 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32370884 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:32370834 original size:57 final size:58
Alignment explanation
Indices: 32370727--32370883 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
32370717 ATAGTAAGTC
*
32370727 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
32370784 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
32370841 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
32370884 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:32373842 original size:42 final size:42
Alignment explanation
Indices: 32373726--32373880 Score: 170
Period size: 42 Copynumber: 3.7 Consensus size: 42
32373716 TATTACACCA
* * * ** *
32373726 ATGCCATATCCCAAATATGGTCATACATGGGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
32373768 ATGCCAATAACCTAGCA-ATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAG-ATATGGTCTTACACGAAATCTCATATCG
32373811 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT-ATCG
* * *
32373853 CTGTCATATCCCAGATATAGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
32373881 ATAGCCTCAG
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 1 0.01
42 60 0.62
43 34 0.35
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:32381633 original size:46 final size:47
Alignment explanation
Indices: 32381486--32381744 Score: 180
Period size: 47 Copynumber: 5.6 Consensus size: 47
32381476 TTTGTGAGCC
* **
32381486 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCAC-A-TTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACAT-A-AGCT
** * * *
32381532 AGTGTAAGATGATGTCTGGGACATGGCATCGGCATTGAGACGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGAC-ATAAGCT
*
32381580 AGTGTAAGA-CATGTCTGGGACATGCAACGGCCTCGAGACATAAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACATAAGCT
* * * * * *
32381626 AGGGTAAGA-CATG-CTTGGGACAAGTAACAG-CTACGAGATGAT-AG-T
1 AGTGTAAGACCATGTC-TGGGACATGCATCGGCCT-CGAGA-CATAAGCT
* * * * *
32381671 CAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATATGAGCC
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACATAAGCT
32381719 AGTGTAAGACCATGTCTGGGACATGC
1 AGTGTAAGACCATGTCTGGGACATGC
32381745 CATTGGCACC
Statistics
Matches: 173, Mismatches: 24, Indels: 32
0.76 0.10 0.14
Matches are distributed among these distances:
45 5 0.03
46 69 0.40
47 70 0.40
48 27 0.16
49 1 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACATAAGCT
Found at i:32388673 original size:46 final size:45
Alignment explanation
Indices: 32388520--32388781 Score: 201
Period size: 47 Copynumber: 5.6 Consensus size: 45
32388510 TTTGTTTGTG
* *
32388520 AGCCAATGTAAGA-CATGTCTGGGACATGCATCGGC-C-ATATTATGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGA-T-T-A
* * * * *
32388565 GAGCCAGTGTAAGACGATGTCTGGGACATGGCATCGGTATTGAAATGA
1 -AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGG-CTCGAGATTA
* * * *
32388613 GATCTAGTTTAAGA-CATGTCTGAGACATGCATCGGCCTCGAGACTTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGCATCGG-CTCGAGA-TTA
* * * *
32388660 AGCCAGGGTAAGA-CATGCCTGGGACATGCAACGGCTACGAGATGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCT-CGAGATTA
* * * *
32388705 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGAGATTTA
1 -AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTCGAGA-TTA
32388753 AGCCAGTGTAAGACCATGTCTGGGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATG
32388782 GAATTGGCAT
Statistics
Matches: 172, Mismatches: 33, Indels: 22
0.76 0.15 0.10
Matches are distributed among these distances:
45 4 0.02
46 67 0.39
47 71 0.41
48 27 0.16
50 1 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGATTA
Found at i:32388772 original size:140 final size:140
Alignment explanation
Indices: 32388527--32388781 Score: 311
Period size: 140 Copynumber: 1.8 Consensus size: 140
32388517 GTGAGCCAAT
* * * * *
32388527 GTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCCAGTGTAAGACGATGTCTGGGAC
1 GTAAGACATGCCTGGGACATGCAACGGCCAGATGATGAGAGCCAGTGTAAGACCATGTCTGGGAC
* * *
32388592 ATGGCATCGGTATTGAAATGAGATCTAGTTTAAGACATGTCTGAGACATGCATCGGCCTCGAGAC
66 ATGGCATCGGTATTGAAATGAGAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCCTCGAGAC
32388657 TTAAGCCAGG
131 TTAAGCCAGG
* * *
32388667 GTAAGACATGCCTGGGACATGCAACGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTGGGA
1 GTAAGACATGCCTGGGACATGCAACGGCCA-GATGATGAGAGCCAGTGTAAGACCATGTCTGGGA
* * * *
32388731 CATGGCAT-TG-ACTTGAGATTTA-AGCCAGTGTAAGACCATGTCTGGGACATG
65 CATGGCATCGGTA-TTGA-AATGAGAGCCAGTGTAAGA-CATGTCTGAGACATG
32388782 GAATTGGCAT
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
138 1 0.01
139 15 0.16
140 79 0.82
141 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (140 bp):
GTAAGACATGCCTGGGACATGCAACGGCCAGATGATGAGAGCCAGTGTAAGACCATGTCTGGGAC
ATGGCATCGGTATTGAAATGAGAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCCTCGAGAC
TTAAGCCAGG
Found at i:32397707 original size:50 final size:50
Alignment explanation
Indices: 32397632--32397732 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
32397622 CTCGTAAGAG
*
32397632 TTAATTCGCCCGATAACACATCAGATGCTCATAAGAGCTAATCCATCCGA
1 TTAATTCACCCGATAACACATCAGATGCTCATAAGAGCTAATCCATCCGA
* *
32397682 TTAATTCACCCGATAACACGTCAGATGCTTATAAGAGCTAATCCATCCGA
1 TTAATTCACCCGATAACACATCAGATGCTCATAAGAGCTAATCCATCCGA
32397732 T
1 T
32397733 AACATGCCAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.26
Consensus pattern (50 bp):
TTAATTCACCCGATAACACATCAGATGCTCATAAGAGCTAATCCATCCGA
Found at i:32397747 original size:37 final size:36
Alignment explanation
Indices: 32397691--32397811 Score: 127
Period size: 37 Copynumber: 3.3 Consensus size: 36
32397681 ATTAATTCAC
*
32397691 CCGATAACACGTCAGATGCTTATAAGAGCTAATCCAT
1 CCGATAACACG-CATATGCTTATAAGAGCTAATCCAT
*
32397728 CCGATAACATGCCATATGCTCT-TAAGAGCTAATCCAT
1 CCGATAACACG-CATATGCT-TATAAGAGCTAATCCAT
* * * * *
32397765 TCGATAACACGCTTGATGCTCATAAGAGCTAGTCCAA
1 CCGATAACACGCAT-ATGCTTATAAGAGCTAATCCAT
*
32397802 CCGAAAACAC
1 CCGATAACAC
32397812 ACCAAAACAG
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
36 2 0.03
37 67 0.96
38 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (36 bp):
CCGATAACACGCATATGCTTATAAGAGCTAATCCAT
Found at i:32405588 original size:40 final size:40
Alignment explanation
Indices: 32405521--32405697 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
32405511 ACCCAAGCAT
*
32405521 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
32405560 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
32405600 CTTCGGGTCTTAGCCTGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
32405640 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
32405680 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
32405698 TTATCATCCG
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:32405654 original size:80 final size:79
Alignment explanation
Indices: 32405521--32405697 Score: 250
Period size: 80 Copynumber: 2.2 Consensus size: 79
32405511 ACCCAAGCAT
* * *
32405521 CTTCGGGAT-TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGG-TCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGC
32405585 AACTCGCACAAATGC
65 AACTCGCACAAATGC
*
32405600 CTTCGGGTCTTAGCCTGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
1 CTTCGGGTCTTAGCC-GGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAG
*
32405664 CAACTCGCACGAATGC
64 CAACTCGCACAAATGC
*
32405680 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAG-CCGG
32405698 TTATCATCCG
Statistics
Matches: 88, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 71 0.81
81 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (79 bp):
CTTCGGGTCTTAGCCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:32420165 original size:21 final size:21
Alignment explanation
Indices: 32420124--32420165 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
32420114 TTCCCCACCT
*
32420124 CCCCCGATTCCTCAATCTGTA
1 CCCCCGATTCCTCAAGCTGTA
*
32420145 CCCCCGATGT-CTCAAGGTGTA
1 CCCCCGAT-TCCTCAAGCTGTA
32420166 GATCTGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.19, C:0.38, G:0.17, T:0.26
Consensus pattern (21 bp):
CCCCCGATTCCTCAAGCTGTA
Found at i:32431809 original size:63 final size:63
Alignment explanation
Indices: 32431732--32431857 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
32431722 CTCATATGAG
32431732 CTATGGAGAATTTGCAACAAATGCAAGACCTCAGCCATCAATAGGACATCCAAGACTAACACC
1 CTATGGAGAATTTGCAACAAATGCAAGACCTCAGCCATCAATAGGACATCCAAGACTAACACC
32431795 CTATGGAGAATTTGCAACAAATGCAAGACCTCAGCCATCAATAGGACATCCAAGACTAACACC
1 CTATGGAGAATTTGCAACAAATGCAAGACCTCAGCCATCAATAGGACATCCAAGACTAACACC
32431858 AGAAACTGTA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.40, C:0.27, G:0.16, T:0.17
Consensus pattern (63 bp):
CTATGGAGAATTTGCAACAAATGCAAGACCTCAGCCATCAATAGGACATCCAAGACTAACACC
Found at i:32435963 original size:6 final size:6
Alignment explanation
Indices: 32435936--32436014 Score: 54
Period size: 6 Copynumber: 12.8 Consensus size: 6
32435926 TATCAGAGCT
* * * *
32435936 AGAATC AAAATG AGAATT AGAATC AGAATC A-AGTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
32435985 AGTATC AGGTAA-C TGAATC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
32436015 GTGAATGCAA
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
5 4 0.07
6 45 0.80
7 4 0.07
8 3 0.05
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:32435982 original size:25 final size:25
Alignment explanation
Indices: 32435948--32436014 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
32435938 AATCAAAATG
* *
32435948 AGAATTAGAATCAGAATCAAGTGAC
1 AGAATCAGAATCAGAATCAAGTAAC
* *
32435973 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAAGTAAC
*
32435998 TGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
32436015 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.46, C:0.13, G:0.19, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAAGTAAC
Found at i:32436398 original size:22 final size:22
Alignment explanation
Indices: 32436370--32436435 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
32436360 GCAAATACGT
*
32436370 TTGGCACACAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
* * *
32436392 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGA
*
32436414 TTGGCGCAAAGCCATAATCAGA
1 TTGGCACAAAGCCATAATCAGA
32436436 AGTCTTTAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGA
Found at i:32436711 original size:16 final size:16
Alignment explanation
Indices: 32436690--32436720 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32436680 ATCGCAACCC
*
32436690 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
32436706 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
32436721 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:32436892 original size:27 final size:27
Alignment explanation
Indices: 32436862--32437383 Score: 479
Period size: 27 Copynumber: 19.3 Consensus size: 27
32436852 GGGGCAAAAT
* *
32436862 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
32436889 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
32436916 GGTATTTTTACTCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
32436943 GGTAATTTTATCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
32436970 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
32436997 GGT-ATTTCTACCCTATAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
32437024 GGT-ATTTCTATCCTAC-AGGGATATTTT
1 GGTAATTT-TACCCTACAAGGG-TATTTC
* *
32437051 AGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
32437078 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
32437105 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
32437132 AGTAATTCTACCCTAC-AGAGGTATATC
1 GGTAATTTTACCCTACAAG-GGTATTTC
*
32437159 GGT-ATTTCTACCCTATAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* **
32437186 GGT-ATTTCTACCCTTCAAGGGTATTAA
1 GGTAATTT-TACCCTACAAGGGTATTTC
* **
32437213 GGTAATTCTACCCTACCGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * * *
32437240 AGCAATTCTACTCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
32437267 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
32437294 -G-ACATTTCTACCCTACAAGGGTATTTC
1 GGTA-ATTT-TACCCTACAAGGGTATTTC
* * * *
32437321 AGTATTTTTGCCCTACAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
32437348 AGTAATTCTACCTTACAAAGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
32437375 AATAATTTT
1 GGTAATTTT
32437384 GTAAATTGAG
Statistics
Matches: 414, Mismatches: 68, Indels: 26
0.81 0.13 0.05
Matches are distributed among these distances:
26 16 0.04
27 382 0.92
28 15 0.04
29 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:32436925 original size:54 final size:54
Alignment explanation
Indices: 32436866--32437374 Score: 558
Period size: 54 Copynumber: 9.4 Consensus size: 54
32436856 CAAAATGGTA
* * * *
32436866 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
* * * * *
32436919 ATTTTTACTCTACAAGGGTATTTCGGTAATTT-TATCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT-ATTTCTACCCTACAAGGGTATTTCGGT
* * *
32436973 AATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTATAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
* ** *
32437027 ATTTCTATCCTAC-AGGGATATTTTAGTATTTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGG-TATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
* * * *
32437081 ATTTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
* * *
32437135 AATTCTACCCTAC-AGAGGTATATCGGTATTTCTACCCTATAAGGGTATTTCGGT
1 ATTTCTACCCTACAAG-GGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
* ** * ** * *
32437189 ATTTCTACCCTTCAAGGGTATTAAGGTAATTCTACCCTACCGGGGTATTTCAGC
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
* * * * **
32437243 AATTCTACTCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGAC
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
* * * **
32437297 ATTTCTACCCTACAAGGGTATTTCAGTATTTTTGCCCTACAAGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
* * *
32437351 AATTCTACCTTACAAAGGTATTTC
1 ATTTCTACCCTACAAGGGTATTTC
32437375 AATAATTTTG
Statistics
Matches: 380, Mismatches: 69, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
53 13 0.03
54 358 0.94
55 9 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
Found at i:32436997 original size:81 final size:81
Alignment explanation
Indices: 32436862--32437381 Score: 604
Period size: 81 Copynumber: 6.4 Consensus size: 81
32436852 GGGGCAAAAT
* * * *
32436862 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTTTAC
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
*
32436927 TCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* *
32436943 GGTAATTTTATCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
*
32437008 CCTATAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * *
32437024 GGT-ATTTCTATCCTAC-AGGGATATTTTAGTATTTCTACCCTACAGGGGTATTTCGGTATTTTT
1 GGTAATTT-TACCCTACAAGGG-TATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCT
32437087 ACCCTACAAGGGTATTTC
64 ACCCTACAAGGGTATTTC
* * * *
32437105 GGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAGAGGTATATCGGTATTTCTAC
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
*
32437170 CCTATAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * * * *
32437186 GGT-ATTTCTACCCTTCAAGGGTA-TTAAGGTAATTCTACCCTACCGGGGTATTTCAGCAATTCT
1 GGTAATTT-TACCCTACAAGGGTATTTCA-GTAATTCTACCCTACAGGGGTATTTCGGTATTTCT
* *
32437249 ACTCTACAGGGGTATTTC
64 ACCCTACAAGGGTATTTC
* * * *
32437267 AGT-ATTTCTACCCTACAAGGGTATTTC-G-ACATTTCTACCCTACAAGGGTATTTCAGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTCAGTA-A-TTCTACCCTACAGGGGTATTTCGGTATTTC
* *
32437329 TGCCCTACAAGGGTATTTT
63 TACCCTACAAGGGTATTTC
* * * * *
32437348 AGTAATTCTACCTTACAAAGGTATTTCAATAATT
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAATT
32437382 TTGTAAATTG
Statistics
Matches: 376, Mismatches: 51, Indels: 24
0.83 0.11 0.05
Matches are distributed among these distances:
79 1 0.00
80 15 0.04
81 346 0.92
82 13 0.03
83 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
GGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
CCTACAAGGGTATTTC
Found at i:32437450 original size:27 final size:27
Alignment explanation
Indices: 32437413--32437917 Score: 421
Period size: 27 Copynumber: 18.9 Consensus size: 27
32437403 GTAATTCTGT
*
32437413 AAATCGGGGGTACTTT-GATAATTTTAC
1 AAATCGAGGGTA-TTTCGATAATTTTAC
* * *
32437440 AAGTTGAGGGTATTTCAATAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
* *
32437467 AAATTGAGGGTATTTC-AGTAATTTTGC
1 AAATCGAGGGTATTTCGA-TAATTTTAC
32437494 AAA-CTGAGGGTATTTC-AGTAATTTTAC
1 AAATC-GAGGGTATTTCGA-TAATTTTAC
* *
32437521 AAATTGAGGGTATTTCAATAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
* *
32437548 AAATTGAGGGTATTTCAATAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
** *
32437575 -AATCGACTGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
32437601 AAATCGAGGGTATTTC-AGTAATTTTAC
1 AAATCGAGGGTATTTCGA-TAATTTTAC
* * * * *
32437628 -AATCAATGATATTTAGGTAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
*
32437654 AAATCGAGGGTATTTCAATAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
*
32437681 -AATCGACGGTATTTC-AGTAATTTTAC
1 AAATCGAGGGTATTTCGA-TAATTTTAC
* * * * * *
32437707 AAATCAAGGATATTTGGGTAGTTTTAT
1 AAATCGAGGGTATTTCGATAATTTTAC
* *
32437734 AAAGT-GGGGGTACTTT-GGTAATTTTAC
1 AAA-TCGAGGGTA-TTTCGATAATTTTAC
* *
32437761 AAGTCGAGGGTATTTCGGTAATTTTAC
1 AAATCGAGGGTATTTCGATAATTTTAC
32437788 AAATCGAGGGTATTTC-AGTAATTTTAC
1 AAATCGAGGGTATTTCGA-TAATTTTAC
**
32437815 -AATCGACAGTATTTC-AGTAATTTTAC
1 AAATCGAGGGTATTTCGA-TAATTTTAC
* * * *
32437841 AAATCGAGGATATTTGGGTAATTTTAT
1 AAATCGAGGGTATTTCGATAATTTTAC
* * *
32437868 AAACCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCGATAATTTTAC
* * *
32437895 AACT-GGGGGTATTTCAATAATTT
1 AAATCGAGGGTATTTCGATAATTT
32437918 GGTAAAGTAA
Statistics
Matches: 396, Mismatches: 61, Indels: 43
0.79 0.12 0.09
Matches are distributed among these distances:
25 4 0.01
26 109 0.28
27 275 0.69
28 8 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTCGATAATTTTAC
Found at i:32437610 original size:53 final size:54
Alignment explanation
Indices: 32437413--32437917 Score: 510
Period size: 53 Copynumber: 9.4 Consensus size: 54
32437403 GTAATTCTGT
* * * * *
32437413 AAATCGGGGGTACTTTGA-TAATTTTACAAGTTGAGGGTATTTCAATAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
* *
32437467 AAATTGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAAATC-GAGGGTATTTCAGTAATTTTAC
* * * *
32437521 AAATTGAGGGTATTTCAATAATTTTACAAATTGAGGGTATTTCAATAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
** *
32437575 -AATCGACTGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
* * * *
32437628 -AATCAATGATATTT-AGGTAATTTTACAAATCGAGGGTATTTCAATAATTTTAC
1 AAATCGAGGGTATTTCA-GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
* * * ** * *
32437681 -AATCGACGGTATTTCAGTAATTTTACAAATCAAGGATATTTGGGTAGTTTTAT
1 AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
* * * *
32437734 AAAGT-GGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTCGGTAATTTTAC
1 AAA-TCGAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
**
32437788 AAATCGAGGGTATTTCAGTAATTTTAC-AATCGACAGTATTTCAGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
* ** * * * *
32437841 AAATCGAGGATATTTGGGTAATTTTATAAACCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTAC
* * *
32437895 AACT-GGGGGTATTTCAATAATTT
1 AAATCGAGGGTATTTCAGTAATTT
32437918 GGTAAAGTAA
Statistics
Matches: 375, Mismatches: 64, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
53 200 0.53
54 168 0.45
55 7 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
Found at i:32437659 original size:80 final size:81
Alignment explanation
Indices: 32437413--32437917 Score: 510
Period size: 80 Copynumber: 6.3 Consensus size: 81
32437403 GTAATTCTGT
* * * * * *
32437413 AAATCGGGGGTACTTTGA-TAATTTTACAAGTTGAGGGTATTTCAATAATTTTACAAATTGAGGG
1 AAATCGAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGG
*
32437477 TATTTCAGTAATTTTGC
65 TATTTCAGTAATTTTAC
* * *
32437494 AAA-CTGAGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTCAATAATTTTACAAATTGAGGG
1 AAATC-GAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGG
*
32437558 TATTTCAATAATTTTAC
65 TATTTCAGTAATTTTAC
** * * * *
32437575 -AATCGACTGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC-AATCAATGAT
1 AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGT
32437638 ATTT-AGGTAATTTTAC
66 ATTTCA-GTAATTTTAC
* * * *
32437654 AAATCGAGGGTATTTCAATAATTTTAC-AATCGACGGTATTTCAGTAATTTTACAAATCAAGGAT
1 AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGT
** * *
32437718 ATTTGGGTAGTTTTAT
66 ATTTCAGTAATTTTAC
* * * *
32437734 AAAGT-GGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTCGGTAATTTTACAAATCGAGG
1 AAA-TCGAGGGTA-TTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGG
32437797 GTATTTCAGTAATTTTAC
64 GTATTTCAGTAATTTTAC
** * ** * * *
32437815 -AATCGACAGTATTTCAGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGGGGT
1 AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGT
*
32437879 ACTTT-GGTAATTTTAC
66 A-TTTCAGTAATTTTAC
* * *
32437895 AACT-GGGGGTATTTCAATAATTT
1 AAATCGAGGGTATTTCAGTAATTT
32437918 GGTAAAGTAA
Statistics
Matches: 358, Mismatches: 52, Indels: 29
0.82 0.12 0.07
Matches are distributed among these distances:
78 1 0.00
79 48 0.13
80 186 0.52
81 123 0.34
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (81 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGT
ATTTCAGTAATTTTAC
Found at i:32437951 original size:134 final size:132
Alignment explanation
Indices: 32437484--32437917 Score: 351
Period size: 134 Copynumber: 3.3 Consensus size: 132
32437474 GGGTATTTCA
* * * ** ** *
32437484 GTAATTTTGCAAACT-GAGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTCAATAATTTTAC
1 GTAATTTTAC-AACTCGAGGGTATTTCAATAATTTTACAAA-TCAAAGTATTTCAGGAA-TTAAC
* ** * ** * * * *
32437548 AAATTGAGGGTATTTCAATAATTTTAC-AATCGACTG-TATTTCGGTAATTTTACAAATCGAGGG
63 -AATCGACAGTATTTCAGTAATTTTACAAATC-AAGGATATTTGGGTAATTTTATAAACCGGGGG
*
32437611 TA-TTTCA
126 TACTTT-G
* * * * ** ** *
32437618 GTAATTTTACAA-TCAATGATATTT-AGGTAATTTTACAAATCGAGGGTATTTCAATAATTTTAC
1 GTAATTTTACAACTCGAGGGTATTTCA-ATAATTTTACAAATC-AAAGTATTTCAGGAA-TTAAC
* * **
32437681 AATCGACGGTATTTCAGTAATTTTACAAATCAAGGATATTTGGGTAGTTTTATAAAGTGGGGGTA
63 AATCGACAGTATTTCAGTAATTTTACAAATCAAGGATATTTGGGTAATTTTATAAACCGGGGGTA
32437746 CTTTG
128 CTTTG
* ** ** * *
32437751 GTAATTTTACAAGTCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACA
1 GTAATTTTACAACTCGAGGGTATTTCAATAATTTTACAAATC-AAAGTATTTCAGGAA-TTAACA
*
32437816 ATCGACAGTATTTCAGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGGGGTAC
64 ATCGACAGTATTTCAGTAATTTTACAAATCAAGGATATTTGGGTAATTTTATAAACCGGGGGTAC
32437881 TTTG
129 TTTG
*
32437885 GTAATTTTACAACT-GGGGGTATTTCAATAATTT
1 GTAATTTTACAACTCGAGGGTATTTCAATAATTT
32437918 GGTAAAGTAA
Statistics
Matches: 261, Mismatches: 31, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
132 28 0.11
133 98 0.38
134 135 0.52
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (132 bp):
GTAATTTTACAACTCGAGGGTATTTCAATAATTTTACAAATCAAAGTATTTCAGGAATTAACAAT
CGACAGTATTTCAGTAATTTTACAAATCAAGGATATTTGGGTAATTTTATAAACCGGGGGTACTT
TG
Found at i:32439912 original size:25 final size:25
Alignment explanation
Indices: 32439883--32439949 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
32439873 AATCAAAATG
* * *
32439883 AGAATTAGAATCAGAATTAGGTGAT
1 AGAATCAGAATCAGAATCAGGTGAC
*
32439908 AGAATCAGAATCAGTATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
32439933 AAAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
32439950 GTGAGTACAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.22
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:32440104 original size:27 final size:26
Alignment explanation
Indices: 32440067--32440146 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
32440057 AGCATGGCTG
* *
32440067 CCAGAACAGATATTGTGACAAAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
*
32440093 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAAAGCCA
* *
32440120 CCAAAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATATTGTGGCAAAGCCA
32440146 C
1 C
32440147 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 25 0.53
27 22 0.47
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:32440874 original size:27 final size:27
Alignment explanation
Indices: 32440801--32441282 Score: 544
Period size: 27 Copynumber: 17.9 Consensus size: 27
32440791 AAAAATGGTA
* * * *
32440801 ATTT-TACCCCACAAAGGTATCTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* *
32440827 AATTCTACCCTAC-TGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* *
32440853 ATTTCTACCTTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* * * *
32440880 AATTCTATCCTATAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* *
32440907 AATTCTACCCTACAGGGGTATTTC-GAT
1 ATTTCTACCCTACAAGGGTATTTCAG-T
**
32440934 ATTTCTACCCTACAAGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* * *
32440961 ATTTCTATCCTACAGGGGTATTTCAAT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* * * *
32440988 AATCCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
*
32441015 ATTTCTACCCTACAACGGTATTTC-GTT
1 ATTTCTACCCTACAAGGGTATTTCAG-T
* *
32441042 AATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* *
32441069 AATTCTACCCTAC-AGGGATATTTCGGT
1 ATTTCTACCCTACAAGGG-TATTTCAGT
32441096 ATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
32441123 ATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* * *
32441150 AATTCTACCCTACAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* *
32441177 AATTCTACCCTACAGGGGTATTTC-GAT
1 ATTTCTACCCTACAAGGGTATTTCAG-T
**
32441204 ATTTCTACCCTACAAGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
* *
32441231 ATTTCTACCCTTCAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCAGT
*
32441258 ATTTCTACCCTACAGGGGTATTTCA
1 ATTTCTACCCTACAAGGGTATTTCA
32441283 ATAATTTTAT
Statistics
Matches: 392, Mismatches: 54, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
26 29 0.07
27 356 0.91
28 7 0.02
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCAGT
Found at i:32440913 original size:54 final size:54
Alignment explanation
Indices: 32440801--32441282 Score: 610
Period size: 54 Copynumber: 9.0 Consensus size: 54
32440791 AAAAATGGTA
* * * *
32440801 ATTT-TACCCCACAAAGGTATCTCGGTAATTCTACCCTAC-TGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* * *
32440853 ATTTCTACCTTACAAGGGTATTTCGGTAATTCTATCCTATAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* * * * * **
32440907 AATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* * ** * *
32440961 ATTTCTATCCTACAGGGGTATTTCAATAATCCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* *
32441015 ATTTCTACCCTACAACGGTATTTCGTTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* * *
32441069 AATTCTACCCTAC-AGGGATATTTCGGTATTTCTACCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGG-TATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* *
32441123 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* * * * * **
32441177 AATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTTGGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* *
32441231 ATTTCTACCCTTCAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCA
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
32441283 ATAATTTTAT
Statistics
Matches: 371, Mismatches: 55, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
52 4 0.01
53 32 0.09
54 331 0.89
55 4 0.01
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
Found at i:32440951 original size:81 final size:81
Alignment explanation
Indices: 32440816--32441281 Score: 614
Period size: 81 Copynumber: 5.8 Consensus size: 81
32440806 ACCCCACAAA
* * * *
32440816 GGTATCTCGGTAATTCTACCCTAC-TGGGTATTTC-AGTATTTCTACCTTACAAGGGTATTTCGG
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGA-TATTTCTACCCTACAAGGGTATTTCGG
* * *
32440879 TAATTCTATCCTATAGG
65 TATTTCTACCCTACAGG
*
32440896 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTTGGT
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTCGGT
*
32440961 ATTTCTATCCTACAGG
66 ATTTCTACCCTACAGG
* * * * *
32440977 GGTATTTCAATAATCCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAACGGTATTTCGTT
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTCGGT
*
32441042 AATTCTACCCTACAGG
66 ATTTCTACCCTACAGG
* * *
32441058 GGTATTTCAGTAATTCTACCCTACAGGGATATTTCGGTATTTCTACCCTACAAGGGTATTTCAGT
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTCGGT
*
32441123 ATTTCTACCCTACAAG
66 ATTTCTACCCTACAGG
* * * *
32441139 GGTATTTCAGTAATTCTACCCTACAGGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTTCGA
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGA-TATTTCTACCCTACAAGGGTATTTCGG
*
32441203 TATTTCTACCCTACAAG
65 TATTTCTACCCTACAGG
** * * * * *
32441220 GGTATTTTGGTATTTCTACCCTTCAAGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTC
1 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTC
32441282 AATAATTTTA
Statistics
Matches: 344, Mismatches: 38, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
80 22 0.06
81 321 0.93
82 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (81 bp):
GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTCGGT
ATTTCTACCCTACAGG
Found at i:32441357 original size:27 final size:26
Alignment explanation
Indices: 32441273--32441696 Score: 309
Period size: 27 Copynumber: 15.8 Consensus size: 26
32441263 TACCCTACAG
* *
32441273 GGGTATTTCAATAATTTTATAAATCGA
1 GGGTATTT-GATAATTTTACAAATCGA
* ** * ** * *
32441300 AGGTAAAATGATAATTCTGTAAATTGG
1 GGGT-ATTTGATAATTTTACAAATCGA
*
32441327 GGGTACTTTGATAATTTTACAAGTCGA
1 GGGTA-TTTGATAATTTTACAAATCGA
* *
32441354 GGGTATTTCAATAATTTTGCAAA-CTGA
1 GGGTATTT-GATAATTTTACAAATC-GA
*
32441381 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTT-GATAATTTTACAAATCGA
* *
32441408 GGGTATTTCAGTAATTTTAC-AATCAA
1 GGGTATTTGA-TAATTTTACAAATCGA
* * * *
32441434 TGATATTTCGGTAATTTTACAAATTGA
1 GGGTATTT-GATAATTTTACAAATCGA
*
32441461 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTGA-TAATTTTACAAATCGA
* * *
32441487 TGGTATTTCAGTAATTTTACAAATCAA
1 GGGTATTTGA-TAATTTTACAAATCGA
* * * * *
32441514 GGATATTTGGGTAGTTTTATAAA-CTGG
1 GGGTATTT-GATAATTTTACAAATC-GA
* *
32441541 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTA-TTTGATAATTTTACAAATCGA
*
32441568 GGGTATTTTGGTAATTTTACAAATCGA
1 GGGTA-TTTGATAATTTTACAAATCGA
*
32441595 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTT-GATAATTTTACAAATCGA
*
32441622 GGGTATTTCAGTAATTTTAC-AATCGA
1 GGGTATTTGA-TAATTTTACAAATCGA
* * *
32441648 CGGTATTTCGATAATTTTATAAACCGA
1 GGGTATTT-GATAATTTTACAAATCGA
*
32441675 GGGTACTTTGGTAATTTTACAA
1 GGGTA-TTTGATAATTTTACAA
32441697 TTGGGGGTAT
Statistics
Matches: 315, Mismatches: 63, Indels: 38
0.76 0.15 0.09
Matches are distributed among these distances:
26 74 0.23
27 231 0.73
28 10 0.03
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
GGGTATTTGATAATTTTACAAATCGA
Found at i:32441440 original size:26 final size:27
Alignment explanation
Indices: 32441338--32441717 Score: 400
Period size: 27 Copynumber: 14.2 Consensus size: 27
32441328 GGTACTTTGA
* *
32441338 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAATCGAGGGTATTTCAG
* *
32441365 TAATTTTGCAAA-CTGAGGGTATTTCGG
1 TAATTTTACAAATC-GAGGGTATTTCAG
32441392 TAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * * *
32441419 TAATTTTAC-AATCAATGATATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAG
*
32441445 TAATTTTACAAATTGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
*
32441472 TAATTTTAC-AATCGATGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * **
32441498 TAATTTTACAAATCAAGGATATTTGGG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * * *
32441525 TAGTTTTATAAA-CTGGGGGTACTTT-GG
1 TAATTTTACAAATC-GAGGGTA-TTTCAG
* **
32441552 TAATTTTACAAGTCGAGGGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTCAG
*
32441579 TAATTTTACAAATCGAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAG
32441606 TAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
*
32441633 TAATTTTAC-AATCGACGGTATTTC-G
1 TAATTTTACAAATCGAGGGTATTTCAG
* * *
32441658 ATAATTTTATAAACCGAGGGTACTTT-GG
1 -TAATTTTACAAATCGAGGGTA-TTTCAG
* *
32441686 TAATTTTAC-AATTGGGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
32441712 TAATTT
1 TAATTT
32441718 GGTAAACTAA
Statistics
Matches: 297, Mismatches: 43, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
25 4 0.01
26 88 0.30
27 196 0.66
28 9 0.03
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCAG
Found at i:32441457 original size:53 final size:53
Alignment explanation
Indices: 32441338--32441717 Score: 440
Period size: 53 Copynumber: 7.1 Consensus size: 53
32441328 GGTACTTTGA
* * * *
32441338 TAATTTTACAAGTCGAGGGTATTTCAATAATTTTGCAAACTGAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATC-GAGGGTATTTCGG
* * *
32441392 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAATGATATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGG
* * *
32441445 TAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAATCGATGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGG
* * ** * * * *
32441498 TAATTTTACAAATCAAGGATATTTGGGTAGTTTTATAAACTGGGGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATC-GAGGGTA-TTTCGG
* **
32441552 TAATTTTACAAGTCGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC-AATCGAGGGTATTTCGG
* *
32441606 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGA
1 TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGG
* * * * * *
32441659 TAATTTTATAAACCGAGGGTACTTT-GGTAATTTTACAATTGGGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTACAATCGAGGGTATTTCGG
32441712 TAATTT
1 TAATTT
32441718 GGTAAACTAA
Statistics
Matches: 278, Mismatches: 43, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
53 156 0.56
54 116 0.42
55 6 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAGGGTATTTCGG
Found at i:32441548 original size:214 final size:214
Alignment explanation
Indices: 32441319--32441717 Score: 613
Period size: 214 Copynumber: 1.9 Consensus size: 214
32441309 GATAATTCTG
* *
32441319 TAAATTGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAATAATTTTGCAAA-CTGAGG
1 TAAACTGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAAATC-GAGG
* *
32441383 GTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAATGATATTTCGGTAA
65 GTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGATATTTCGATAA
** *
32441448 TTTTACAAATTGAGGGTA-TTTCAGTAATTTTACAATCGATGGTATTTCAGTAATTTTACAAATC
130 TTTTACAAACCGAGGGTACTTT-AGTAATTTTACAATCGAGGGTATTTCAGTAATTTTACAAATC
32441512 AAGGATATTTGGGTAGTTTTA
194 AAGGATATTTGGGTAGTTTTA
* ***
32441533 TAAACTGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTGGTAATTTTACAAATCGAGGG
1 TAAACTGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAAATCGAGGG
* *
32441598 TATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCGATAAT
66 TATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGATATTTCGATAAT
* * * *
32441663 TTTATAAACCGAGGGTACTTTGGTAATTTTACAATTGGGGGTATTTCAGTAATTT
131 TTTACAAACCGAGGGTACTTTAGTAATTTTACAATCGAGGGTATTTCAGTAATTT
32441718 GGTAAACTAA
Statistics
Matches: 166, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
214 162 0.98
215 4 0.02
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (214 bp):
TAAACTGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAAATCGAGGG
TATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGATATTTCGATAAT
TTTACAAACCGAGGGTACTTTAGTAATTTTACAATCGAGGGTATTTCAGTAATTTTACAAATCAA
GGATATTTGGGTAGTTTTA
Found at i:32442630 original size:20 final size:21
Alignment explanation
Indices: 32442589--32442631 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
32442579 GTTACAGTAT
32442589 ATCTATCAACAAACATTCAAA
1 ATCTATCAACAAACATTCAAA
**
32442610 ATCTATCATTAAACA-TCAAA
1 ATCTATCAACAAACATTCAAA
32442630 AT
1 AT
32442632 ACTCATGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.28
Consensus pattern (21 bp):
ATCTATCAACAAACATTCAAA
Found at i:32447616 original size:26 final size:26
Alignment explanation
Indices: 32447587--32447663 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
32447577 CAGTGGCTAG
*
32447587 TTTGACCAATTGATTCTAGTAATTGA
1 TTTGACCAATTGATTCTAGTAACTGA
32447613 TTTGACCAATTGATTCTAGTAACTGA
1 TTTGACCAATTGATTCTAGTAACTGA
* * * *
32447639 TATGACCAACTAATTCTATTAACTG
1 TTTGACCAATTGATTCTAGTAACTG
32447664 TTTATTTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (26 bp):
TTTGACCAATTGATTCTAGTAACTGA
Found at i:32451602 original size:46 final size:45
Alignment explanation
Indices: 32451549--32451718 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 45
32451539 GTGTGTGCTA
*
32451549 GTGTAAGAAATGTCTGGGACATGCATCGGCCACATTATGAGAGCCT
1 GTGTAAGACATGTCTGGGACATGCATCGGCC-CATTATGAGAGCCT
*
32451595 GTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGA-GACGAGAGCT
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT-ATGA-GAG-CCT
* * *
32451642 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGA-GATGTA-AGCCA
1 -GTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTATG-AGAGCCT
32451689 GTGTAAGACATGTCTGGGACATGCATCGGC
1 GTGTAAGACATGTCTGGGACATGCATCGGC
32451719 TACGAGGTGT
Statistics
Matches: 105, Mismatches: 7, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
45 6 0.06
46 47 0.45
47 30 0.29
48 18 0.17
49 2 0.02
50 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (45 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCCATTATGAGAGCCT
Found at i:32451779 original size:140 final size:140
Alignment explanation
Indices: 32451548--32451806 Score: 344
Period size: 140 Copynumber: 1.8 Consensus size: 140
32451538 TGTGTGTGCT
* * *
32451548 AGTGTAAGAAATGTCTGGGACATGCATCGGCCACATTATGAGAGCCTGTGTAAGACCATGTCTGG
1 AGTGTAAGAAATGTCTGGGACATGCATCGGCCACA-GAGGAGAGCCAGTGTAAGACCATGTCTGG
* *
32451613 GACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCG
65 GACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATGCATTGGCCTCG
32451677 AGATGTAAGCC
130 AGATGTAAGCC
* * * * *
32451688 AGTGTAAGACATGTCTGGGACATGCATCGGCTAC-GAGGTGTGTCAGTGTAAGACCATGTCTGGG
1 AGTGTAAGAAATGTCTGGGACATGCATCGGCCACAGAGGAGAGCCAGTGTAAGACCATGTCTGGG
* * *
32451752 ACATGGCATCGACA-TGTATATGTGAGAGCTAGTGTAAGACCATGTTTAGGACATG
66 ACATGGCATCGACATTG-AGA--CGAGAGCTAGTGTAAGACCATGTCTAGGACATG
32451807 GAGTCAGCCT
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
137 2 0.02
138 39 0.38
140 48 0.47
141 13 0.13
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (140 bp):
AGTGTAAGAAATGTCTGGGACATGCATCGGCCACAGAGGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATGCATTGGCCTCGA
GATGTAAGCC
Found at i:32462827 original size:12 final size:12
Alignment explanation
Indices: 32462810--32462834 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32462800 TATCCCTATT
32462810 CAAGACTAATAA
1 CAAGACTAATAA
32462822 CAAGACTAATAA
1 CAAGACTAATAA
32462834 C
1 C
32462835 GTCTAATCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.20, G:0.08, T:0.16
Consensus pattern (12 bp):
CAAGACTAATAA
Found at i:32470894 original size:12 final size:12
Alignment explanation
Indices: 32470877--32470901 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32470867 TATCCCTATT
32470877 CAAGACTAATAA
1 CAAGACTAATAA
32470889 CAAGACTAATAA
1 CAAGACTAATAA
32470901 C
1 C
32470902 GTCTAATCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.20, G:0.08, T:0.16
Consensus pattern (12 bp):
CAAGACTAATAA
Found at i:32477373 original size:33 final size:33
Alignment explanation
Indices: 32477331--32477397 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
32477321 AACAATATGT
*
32477331 CCCAAAAATCCAACCTCTTGGAGCCAAAATTCA
1 CCCAAAAATCCAACCTCTTAGAGCCAAAATTCA
32477364 CCCAAAAATCCAACCTCTTAGAGCCAAAATTCA
1 CCCAAAAATCCAACCTCTTAGAGCCAAAATTCA
32477397 C
1 C
32477398 ATTTACTGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.34, G:0.07, T:0.18
Consensus pattern (33 bp):
CCCAAAAATCCAACCTCTTAGAGCCAAAATTCA
Found at i:32490352 original size:13 final size:13
Alignment explanation
Indices: 32490334--32490372 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
32490324 ATATTATAAT
*
32490334 TATTTTGTGTTAA
1 TATTTTATGTTAA
*
32490347 TATTTTATGCTAA
1 TATTTTATGTTAA
32490360 TAATTTTATGTTA
1 T-ATTTTATGTTA
32490373 CAAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:32491860 original size:40 final size:40
Alignment explanation
Indices: 32491812--32491977 Score: 237
Period size: 40 Copynumber: 4.2 Consensus size: 40
32491802 GGACTAAGAT
*
32491812 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* * *
32491852 CCGAAGGCATTCGTGCGAGTTACTATATCCGGGGTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* * *
32491892 CCGAAGGCAATTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
32491932 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
32491971 CCGAAGG
1 CCGAAGG
32491978 TACTTGGGTT
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
39 15 0.13
40 97 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:32491948 original size:80 final size:79
Alignment explanation
Indices: 32491812--32491977 Score: 269
Period size: 80 Copynumber: 2.1 Consensus size: 79
32491802 GGACTAAGAT
*
32491812 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
1 CCGAAGGCAATTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
* *
32491877 TATCCGGGGTAAGTC
66 TATCC-GGCTAAATC
* * *
32491892 CCGAAGGCAATTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTA
1 CCGAAGGCAATTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
32491957 TATCCGGCTAAATC
66 TATCCGGCTAAATC
32491971 CCGAAGG
1 CCGAAGG
32491978 TACTTGGGTT
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 14 0.17
80 66 0.82
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA
TATCCGGCTAAATC
Found at i:32497305 original size:46 final size:46
Alignment explanation
Indices: 32497252--32497430 Score: 261
Period size: 46 Copynumber: 3.9 Consensus size: 46
32497242 TATATATACA
* * * * *
32497252 CATCTCATATATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
32497298 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
32497344 CATCTCATACACGTTTTC-CATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACAC-ATTTCGCATTAGCCATTCGGCTTTACCACATATC
32497390 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCAC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCAC
32497431 TTATATACAC
Statistics
Matches: 121, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
45 4 0.03
46 113 0.93
47 4 0.03
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:32497479 original size:22 final size:22
Alignment explanation
Indices: 32497451--32497526 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
32497441 TTCCACGTTC
32497451 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
32497473 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
32497497 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
32497520 ATCACAT
1 ATCACAT
32497527 ATATGCATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:32497483 original size:47 final size:47
Alignment explanation
Indices: 32497408--32497786 Score: 526
Period size: 47 Copynumber: 8.1 Consensus size: 47
32497398 ACACATTTCG
* * * * * * *
32497408 CATTAGCCATTCGGCTTTACCACTTATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
32497455 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
32497502 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
32497549 TATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * *
32497596 CTTTGGCCACTCGGCCTTATCACACATATGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
32497643 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
32497690 CATTGACCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* ** * * **
32497737 CATTTGCCATTCGGAATTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
32497784 CAT
1 CAT
32497787 AAAATCCTAA
Statistics
Matches: 301, Mismatches: 30, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 300 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:32497548 original size:25 final size:25
Alignment explanation
Indices: 32497473--32497548 Score: 70
Period size: 25 Copynumber: 3.2 Consensus size: 25
32497463 ATTCTGCCTT
*
32497473 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATATTCACATTC
* * * *
32497498 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCATATTC-ACATTC
32497520 ATCACATATATGCATATTCACATTC
1 ATCACATATATGCATATTCACATTC
32497545 ATCA
1 ATCA
32497549 TATTGGCCAT
Statistics
Matches: 37, Mismatches: 9, Indels: 10
0.66 0.16 0.18
Matches are distributed among these distances:
22 10 0.27
23 6 0.16
24 6 0.16
25 15 0.41
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCATATTCACATTC
Found at i:32504447 original size:7 final size:6
Alignment explanation
Indices: 32504420--32504445 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
32504410 TATTTTTTCC
32504420 TTCTTT TTCTTT TTCTTT TTCTTT TT
1 TTCTTT TTCTTT TTCTTT TTCTTT TT
32504446 TCAAAGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTCTTT
Found at i:32506491 original size:40 final size:40
Alignment explanation
Indices: 32506349--32506570 Score: 225
Period size: 41 Copynumber: 5.5 Consensus size: 40
32506339 TACTCGAATG
* * **
32506349 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* *
32506390 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
32506431 ACATCCGGACTAA-TATCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGT-CCCGAAGGCATTTGTGCTAGTGACT
* *
32506471 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * * **
32506511 ATATCCGGGTTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
32506550 ATATCC-GGCTAAACCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
32506571 ATGCTTGATT
Statistics
Matches: 156, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
38 12 0.08
39 15 0.10
40 62 0.40
41 67 0.43
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:32508936 original size:16 final size:17
Alignment explanation
Indices: 32508904--32508937 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
32508894 GGGGATGGCG
32508904 TTTGTTTGATGTTTATT
1 TTTGTTTGATGTTTATT
*
32508921 TTTGTTT-ATTTTTATT
1 TTTGTTTGATGTTTATT
32508937 T
1 T
32508938 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (17 bp):
TTTGTTTGATGTTTATT
Found at i:32517940 original size:40 final size:40
Alignment explanation
Indices: 32517846--32517990 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
32517836 TACTCGAATG
*
32517846 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
32517887 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
32517927 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
32517967 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
32517991 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:32525673 original size:25 final size:25
Alignment explanation
Indices: 32525645--32525696 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
32525635 TACAGCTACT
32525645 CAAATGTATATATAGTTATGAATAA
1 CAAATGTATATATAGTTATGAATAA
32525670 CAAATGTATATATAGTTATGAATAA
1 CAAATGTATATATAGTTATGAATAA
32525695 CA
1 CA
32525697 GACACTTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.35
Consensus pattern (25 bp):
CAAATGTATATATAGTTATGAATAA
Found at i:32526882 original size:66 final size:66
Alignment explanation
Indices: 32526776--32526908 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
32526766 TTCATGTTTG
*
32526776 TATAGAAGTACACAAGATTTCTGGGTTAAATGTTATTTTATTCAATCTTGCTTCTACTGTTTAAT
1 TATAGAAGTACACAAGAATTCTGGGTTAAATGTTATTTTATTCAATCTTGCTTCTACTGTTTAAT
32526841 C
66 C
32526842 TATAGAAGTACACAAGAATTCTGGGTTAAATGTTATTTTATTCAATCTTGCTTCTACTGTTTAAT
1 TATAGAAGTACACAAGAATTCTGGGTTAAATGTTATTTTATTCAATCTTGCTTCTACTGTTTAAT
32526907 C
66 C
32526908 T
1 T
32526909 TTGGGTTTCA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.44
Consensus pattern (66 bp):
TATAGAAGTACACAAGAATTCTGGGTTAAATGTTATTTTATTCAATCTTGCTTCTACTGTTTAAT
C
Found at i:32529806 original size:46 final size:45
Alignment explanation
Indices: 32529753--32529928 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
32529743 TATTTGGGCA
32529753 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATG
*** * * *
32529799 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAT-CTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAATG
* ** *
32529844 CATCCGAGCGAGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATG
* *
32529892 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32529929 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 69 0.66
47 32 0.30
48 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
Found at i:32532903 original size:14 final size:15
Alignment explanation
Indices: 32532854--32532903 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
32532844 GTATCTTGGG
*
32532854 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
32532869 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
32532884 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
32532898 TTTCTT
1 TTTCTT
32532904 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:32544578 original size:22 final size:22
Alignment explanation
Indices: 32544528--32544570 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
32544518 CTGCATCTGT
**
32544528 AATTGATATGTTCTGTATTTGC
1 AATTGATATGTTCTGTATCCGC
32544550 AATTGATATGTTCTGTATCCG
1 AATTGATATGTTCTGTATCCG
32544571 ATTTTGATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.47
Consensus pattern (22 bp):
AATTGATATGTTCTGTATCCGC
Found at i:32549337 original size:42 final size:42
Alignment explanation
Indices: 32549290--32549381 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
32549280 TGGTGGTGAA
*
32549290 GCTTCTGTTCAAGCCCAAAGCCAGGCCCAACAAGGTCCC-CTT
1 GCTTCTGTTCAAGCCCAAAGCCAGGCCCAACAAGG-CCCTATT
* ** * *
32549332 GCTTCTGTTGAAGCCCAAATTCAGTCTCAACAAGGCCCTATT
1 GCTTCTGTTCAAGCCCAAAGCCAGGCCCAACAAGGCCCTATT
32549374 GCTTCTGT
1 GCTTCTGT
32549382 CTCATCCCGT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 3 0.07
42 40 0.93
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (42 bp):
GCTTCTGTTCAAGCCCAAAGCCAGGCCCAACAAGGCCCTATT
Found at i:32555316 original size:20 final size:20
Alignment explanation
Indices: 32555291--32555333 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
32555281 ATCAGTATTC
32555291 TTATCCTGAATTTTAGGATT
1 TTATCCTGAATTTTAGGATT
*
32555311 TTATCCTGAATTTTAGTATT
1 TTATCCTGAATTTTAGGATT
32555331 TTA
1 TTA
32555334 ATTTGGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53
Consensus pattern (20 bp):
TTATCCTGAATTTTAGGATT
Found at i:32555589 original size:23 final size:23
Alignment explanation
Indices: 32555562--32555636 Score: 78
Period size: 23 Copynumber: 3.0 Consensus size: 23
32555552 CACTATTAAC
32555562 TTAATTTAATTATATTATATATT
1 TTAATTTAATTATATTATATATT
* * *
32555585 TTAATTTAATCATATTACATAATAA
1 TTAATTTAATTATATTATAT-AT-T
32555610 TTAATTTAATTATCATGTTATATATT
1 TTAATTTAATTAT-A--TTATATATT
32555636 T
1 T
32555637 CGCTATTAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
23 18 0.44
24 2 0.05
25 12 0.29
26 2 0.05
27 2 0.05
28 5 0.12
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.55
Consensus pattern (23 bp):
TTAATTTAATTATATTATATATT
Done.