Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 104 of 349
Found at i:32562733 original size:20 final size:21
Alignment explanation
Indices: 32562704--32562746 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
32562694 TGCCACCCTA
*
32562704 GGGAAAATTTAAAAAATATGG
1 GGGAAATTTTAAAAAATATGG
32562725 GGGAAATTTTAAAAAATATGG
1 GGGAAATTTTAAAAAATATGG
32562746 G
1 G
32562747 CCCATATGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.26, T:0.26
Consensus pattern (21 bp):
GGGAAATTTTAAAAAATATGG
Found at i:32564828 original size:19 final size:20
Alignment explanation
Indices: 32564790--32564841 Score: 97
Period size: 19 Copynumber: 2.6 Consensus size: 20
32564780 ATATAACATC
32564790 TTTACTTTTCTGGAAAATGA
1 TTTACTTTTCTGGAAAATGA
32564810 TTTACTTTTCTGG-AAATGA
1 TTTACTTTTCTGGAAAATGA
32564829 TTTACTTTTCTGG
1 TTTACTTTTCTGG
32564842 TGTTTGGATG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 19 0.59
20 13 0.41
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (20 bp):
TTTACTTTTCTGGAAAATGA
Found at i:32565301 original size:46 final size:46
Alignment explanation
Indices: 32565228--32565346 Score: 184
Period size: 46 Copynumber: 2.6 Consensus size: 46
32565218 AATAATATTA
* * * *
32565228 TCCAAATGCATAATTAGTAGTACACCACATGATAACAAAAACATTG
1 TCCAAGTGCATAACTAATATTACACCACATGATAACAAAAACATTG
* *
32565274 TCCATGTGCATAACTAATATTACACCACATGATAACAACAACATTG
1 TCCAAGTGCATAACTAATATTACACCACATGATAACAAAAACATTG
32565320 TCCAAGTGCATAACTAATATTACACCA
1 TCCAAGTGCATAACTAATATTACACCA
32565347 TATTAAAACT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.25
Consensus pattern (46 bp):
TCCAAGTGCATAACTAATATTACACCACATGATAACAAAAACATTG
Found at i:32566349 original size:32 final size:32
Alignment explanation
Indices: 32566300--32566360 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
32566290 TGTCAATCAT
32566300 TTCAATATCCAACAAGCTTA-AAACATAATAAA
1 TTCAATATCCAACAAGC-TAGAAACATAATAAA
* *
32566332 TTCAATATCTAATAAGCTAGAAACATAAT
1 TTCAATATCCAACAAGCTAGAAACATAAT
32566361 CAATATCTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 2 0.08
32 24 0.92
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTAGAAACATAATAAA
Found at i:32568587 original size:29 final size:30
Alignment explanation
Indices: 32568526--32568590 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
32568516 GCAATGGCAT
32568526 ATATATAATCCAAAAAATCAGATGTAACAC
1 ATATATAATCCAAAAAATCAGATGTAACAC
32568556 ATATATAATCCAAAAAATCAGATGTAAC-C
1 ATATATAATCCAAAAAATCAGATGTAACAC
32568585 ATATAT
1 ATATAT
32568591 GTATAATGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.20
30 28 0.80
ACGTcount: A:0.52, C:0.15, G:0.06, T:0.26
Consensus pattern (30 bp):
ATATATAATCCAAAAAATCAGATGTAACAC
Found at i:32570281 original size:28 final size:28
Alignment explanation
Indices: 32570249--32570318 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
32570239 AATGAGATTG
32570249 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
32570277 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
32570305 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32570319 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:32574527 original size:51 final size:49
Alignment explanation
Indices: 32574410--32574549 Score: 172
Period size: 51 Copynumber: 2.8 Consensus size: 49
32574400 TATTGTGAGG
* * * * * *
32574410 TCACGTGTGTAGTACTAAGTGCAGCACTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAG-GCTACTATGCGTACCCGAAAATTGA
* * *
32574460 TCGCATGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGAAAACTGTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAA-T-TGA
32574511 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
32574550 AGATAGCTTC
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
49 16 0.21
50 22 0.29
51 38 0.50
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGA
Found at i:32577574 original size:15 final size:15
Alignment explanation
Indices: 32577554--32577607 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
32577544 TATCGTATCT
32577554 TGGGTTTCTTTATTC
1 TGGGTTTCTTTATTC
32577569 TGGGTTT-TTCTA-TC
1 TGGGTTTCTT-TATTC
*
32577583 TTGGATTTCTTTATTC
1 -TGGGTTTCTTTATTC
*
32577599 -GGTTTTCTT
1 TGGGTTTCTT
32577608 GTTATCTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 12 0.36
15 17 0.52
16 4 0.12
ACGTcount: A:0.07, C:0.13, G:0.19, T:0.61
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:32580129 original size:49 final size:49
Alignment explanation
Indices: 32580072--32580259 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
32580062 TGAGGTCACG
***
32580072 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * *
32580121 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
*
32580172 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
32580221 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
32580260 GCTTCGGCTA
Statistics
Matches: 117, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 75 0.64
50 2 0.02
51 40 0.34
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:32580240 original size:100 final size:100
Alignment explanation
Indices: 32580067--32580254 Score: 340
Period size: 100 Copynumber: 1.9 Consensus size: 100
32580057 TATTGTGAGG
***
32580067 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
32580132 AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
*
32580167 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
32580232 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
32580255 AGATAGCTTC
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
Found at i:32582531 original size:55 final size:51
Alignment explanation
Indices: 32582461--32582564 Score: 147
Period size: 55 Copynumber: 2.0 Consensus size: 51
32582451 GGGAAGAGAT
32582461 TTGAAGAACGAAAGAAGAAGAAGACTTACCTGGATGAAAAAGGAGATGGAAAAAG
1 TTGAAGAACGAAAGAAGAAG--G-CTTACCTGGATG-AAAAGGAGATGGAAAAAG
*
32582516 TTGAAGAAC-AGAAGAAGAAGGCTTACCTGGATGAAGAGGAGATGGAAAA
1 TTGAAGAACGA-AAGAAGAAGGCTTACCTGGATGAAAAGGAGATGGAAAA
32582565 TGTCTTACAG
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
51 15 0.32
52 12 0.26
53 1 0.02
54 1 0.02
55 18 0.38
ACGTcount: A:0.48, C:0.08, G:0.31, T:0.13
Consensus pattern (51 bp):
TTGAAGAACGAAAGAAGAAGGCTTACCTGGATGAAAAGGAGATGGAAAAAG
Found at i:32584199 original size:17 final size:19
Alignment explanation
Indices: 32584157--32584200 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
32584147 ACGAAATTTT
*
32584157 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
32584176 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
32584194 AA-TATTA
1 AATTATTA
32584201 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:32586636 original size:20 final size:20
Alignment explanation
Indices: 32586593--32586640 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
32586583 GCTGTTTTGT
32586593 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
32586613 -ATGGGTCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
32586632 TAT-GGCCAA
1 TATGGGCCAA
32586641 GGCTCAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:32588885 original size:14 final size:13
Alignment explanation
Indices: 32588842--32588892 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
32588832 CATAAAGACT
32588842 AATTAATTTAATTC
1 AATT-ATTTAATTC
*
32588856 CATT-TTTAACTTC
1 AATTATTTAA-TTC
32588869 AATTATTTAATTGC
1 AATTATTTAATT-C
*
32588883 AATTAATTAA
1 AATTATTTAA
32588893 ATAATAATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
12 5 0.16
13 8 0.26
14 18 0.58
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.49
Consensus pattern (13 bp):
AATTATTTAATTC
Found at i:32591410 original size:48 final size:46
Alignment explanation
Indices: 32591329--32591445 Score: 112
Period size: 48 Copynumber: 2.5 Consensus size: 46
32591319 CGATAAGTAC
* * * * * *
32591329 CTATACCATGGCCTGAAGCCATATCAAGGTAACT-TATCTTCGAAGTA
1 CTATATCATGGCCTGAAGCCAAATC-AGGTAACTCAAAC-CCGAAATA
32591376 CTGATATCATGGCCTGAAGCCAAATC-GGTATAACTCAAACCCGAAATA
1 CT-ATATCATGGCCTGAAGCCAAATCAGG--TAACTCAAACCCGAAATA
*
32591424 CTATATAATGGCCTGAAGCCAA
1 CTATATCATGGCCTGAAGCCAA
32591446 CTTAATGTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
46 2 0.03
47 21 0.36
48 34 0.58
49 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (46 bp):
CTATATCATGGCCTGAAGCCAAATCAGGTAACTCAAACCCGAAATA
Found at i:32594237 original size:14 final size:15
Alignment explanation
Indices: 32594215--32594291 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
32594205 CAATCAAACA
32594215 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
32594229 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
32594244 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
32594264 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
32594278 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
32594292 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:32594256 original size:20 final size:20
Alignment explanation
Indices: 32594231--32594270 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32594221 AATATTTTCC
*
32594231 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
32594251 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
32594271 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:32594276 original size:34 final size:35
Alignment explanation
Indices: 32594219--32594285 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
32594209 CAAACACCAG
*
32594219 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
32594254 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
32594286 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:32594674 original size:44 final size:44
Alignment explanation
Indices: 32594611--32594701 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
32594601 CGAGTCACAC
32594611 GCCCGTGTGCTCAACCGTGTGGACGAGAAATAGGCTTGTTTTAT
1 GCCCGTGTGCTCAACCGTGTGGACGAGAAATAGGCTTGTTTTAT
*
32594655 GCCCGTGTGCTCAACCGTGTGGACTAGAAATAGGCTTGTTTTAT
1 GCCCGTGTGCTCAACCGTGTGGACGAGAAATAGGCTTGTTTTAT
32594699 GCC
1 GCC
32594702 ACTTTTCCCC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.30
Consensus pattern (44 bp):
GCCCGTGTGCTCAACCGTGTGGACGAGAAATAGGCTTGTTTTAT
Found at i:32595915 original size:20 final size:20
Alignment explanation
Indices: 32595888--32595996 Score: 71
Period size: 20 Copynumber: 5.5 Consensus size: 20
32595878 TGTATAAACT
* *
32595888 GTAATTCATTCATATAACTA
1 GTAATTCATCCATATAACCA
* *
32595908 GTAGTTCATCCGTATAACCA
1 GTAATTCATCCATATAACCA
* *
32595928 GTAATTCATCCGTAATAA-TA
1 GTAATTCATCCAT-ATAACCA
* * *
32595948 GTAATTTATCTATATCAA-AA
1 GTAATTCATCCATAT-AACCA
*
32595968 GTAATTCATCTATATCAA-CA
1 GTAATTCATCCATAT-AACCA
*
32595988 ATAATTCAT
1 GTAATTCAT
32595997 TCATTTCTAC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
19 2 0.03
20 68 0.92
21 4 0.05
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (20 bp):
GTAATTCATCCATATAACCA
Found at i:32596223 original size:23 final size:25
Alignment explanation
Indices: 32596170--32596256 Score: 87
Period size: 23 Copynumber: 3.6 Consensus size: 25
32596160 AGCCATGATC
32596170 GGTAAGCTCT-TGCTGAGCTGATAAAT
1 GGTAAGCTCTAT-CTGAGCTGA-AAAT
*
32596196 AGTAAGCTCTAT-TGAGCTG-AAAT
1 GGTAAGCTCTATCTGAGCTGAAAAT
* *
32596219 GGTAAGCTCTATCAG-GCTGAACA-
1 GGTAAGCTCTATCTGAGCTGAAAAT
32596242 -GTAAGCTCTATCTGA
1 GGTAAGCTCTATCTGA
32596257 ACAATAAGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
22 13 0.25
23 19 0.37
24 3 0.06
25 7 0.13
26 9 0.17
27 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (25 bp):
GGTAAGCTCTATCTGAGCTGAAAAT
Found at i:32596248 original size:22 final size:20
Alignment explanation
Indices: 32596220--32596289 Score: 72
Period size: 22 Copynumber: 3.4 Consensus size: 20
32596210 AGCTGAAATG
32596220 GTAAGCTCTATCAGGCTGAACA
1 GTAAGCTCTATC--GCTGAACA
32596242 GTAAGCTCTAT--CTGAACA
1 GTAAGCTCTATCGCTGAACA
* *
32596260 ATAAGCTCTATCGATTTGAACA
1 GTAAGCTCTATCG--CTGAACA
32596282 GTAAGCTC
1 GTAAGCTC
32596290 ATACGAGCTG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
18 17 0.41
22 24 0.59
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (20 bp):
GTAAGCTCTATCGCTGAACA
Found at i:32596258 original size:18 final size:18
Alignment explanation
Indices: 32596235--32596271 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
32596225 CTCTATCAGG
*
32596235 CTGAACAGTAAGCTCTAT
1 CTGAACAATAAGCTCTAT
32596253 CTGAACAATAAGCTCTAT
1 CTGAACAATAAGCTCTAT
32596271 C
1 C
32596272 GATTTGAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (18 bp):
CTGAACAATAAGCTCTAT
Found at i:32596301 original size:22 final size:21
Alignment explanation
Indices: 32596196--32596301 Score: 69
Period size: 22 Copynumber: 5.0 Consensus size: 21
32596186 GCTGATAAAT
*
32596196 AGTAAGCTCTATTGAGCTGAA-
1 AGTAAGCTCTA-CGAGCTGAAC
32596217 ATGGTAAGCTCTATC-AGGCTGAAC
1 A--GTAAGCTCTA-CGA-GCTGAAC
*
32596241 AGTAAGCTCT---ATCTGAAC
1 AGTAAGCTCTACGAGCTGAAC
* **
32596259 AATAAGCTCTATCGATTTGAAC
1 AGTAAGCTCTA-CGAGCTGAAC
32596281 AGTAAGCTCATACGAGCTGAA
1 AGTAAGCTC-TACGAGCTGAA
32596302 TTGGTAAGCT
Statistics
Matches: 69, Mismatches: 7, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
18 15 0.22
19 1 0.01
21 1 0.01
22 32 0.46
23 19 0.28
24 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (21 bp):
AGTAAGCTCTACGAGCTGAAC
Found at i:32596311 original size:23 final size:23
Alignment explanation
Indices: 32596282--32596365 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 23
32596272 GATTTGAACA
32596282 GTAAGCTCATACGAGCTGAATTG
1 GTAAGCTCATACGAGCTGAATTG
* * * *
32596305 GTAAGCTCCA-ATGAGATGAAAATA
1 GTAAGCT-CATACGAGCTG-AATTG
*
32596329 GTAAGCTCTTACGAGCTGATATATCG
1 GTAAGCTCATACGAGCTGA-AT-T-G
32596355 GTAAGCTCATA
1 GTAAGCTCATA
32596366 TAAGCAGTGG
Statistics
Matches: 45, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
23 15 0.33
24 19 0.42
25 1 0.02
26 10 0.22
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (23 bp):
GTAAGCTCATACGAGCTGAATTG
Found at i:32599701 original size:42 final size:42
Alignment explanation
Indices: 32599642--32599805 Score: 175
Period size: 42 Copynumber: 3.8 Consensus size: 42
32599632 AGGGTATGTG
32599642 TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATT
1 TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATT
* * * * **
32599684 TGATTTCGTGTAAGACCATGTCTGGGACATGACATCAATACG
1 TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATT
* * * *
32599726 AGATATCGTGTAAGACCATAGCTGGGCTATTGGCATCGATATAT
1 TGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATAT-T
** * *
32599770 GTGATCCCATCTAAGACCATATCTGGGATATGGCAT
1 -TGATTTCGTGTAAGACCATATCTGGGATATGGCAT
32599806 TGGCATCTTA
Statistics
Matches: 96, Mismatches: 23, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
42 59 0.61
43 9 0.09
44 6 0.06
45 22 0.23
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATT
Found at i:32603859 original size:19 final size:19
Alignment explanation
Indices: 32603822--32603859 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32603812 CTAATTAAGT
*
32603822 TTTAATTAGATGAATTTAG
1 TTTAATTAGATGAAATTAG
32603841 TTTAATTAAGA-GAAATTAG
1 TTTAATT-AGATGAAATTAG
32603860 GAAAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (19 bp):
TTTAATTAGATGAAATTAG
Found at i:32604056 original size:29 final size:29
Alignment explanation
Indices: 32604017--32604073 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
32604007 ATATATTATT
*
32604017 ATTATTTTATTATATTAT-AAATTAAATTG
1 ATTATATTATTATATTATGAAA-TAAATTG
32604046 ATTATATTATTATATTATGAAATAAATT
1 ATTATATTATTATATTATGAAATAAATT
32604074 AAGAAAAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 23 0.88
30 3 0.12
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (29 bp):
ATTATATTATTATATTATGAAATAAATTG
Found at i:32604173 original size:32 final size:31
Alignment explanation
Indices: 32604137--32604202 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 31
32604127 AGTACGTTTG
32604137 TATTATTTA-TATATAATTAGTAAAAGATATTT
1 TATTATTTATTAT-TAATTAGTAAAAGAT-TTT
32604169 TATTATTTATTATTAATTAGTAAAAGATTTT
1 TATTATTTATTATTAATTAGTAAAAGATTTT
32604200 TAT
1 TAT
32604203 ATGATAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
31 6 0.18
32 24 0.73
33 3 0.09
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (31 bp):
TATTATTTATTATTAATTAGTAAAAGATTTT
Found at i:32604290 original size:23 final size:22
Alignment explanation
Indices: 32604255--32604299 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
32604245 AAAATACAAA
32604255 TGTAAAATATATATGTGTATATT
1 TGTAAAATATATATGTGT-TATT
* * *
32604278 TGTAATATTTATATTTGTTATT
1 TGTAAAATATATATGTGTTATT
32604300 AAATAAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (22 bp):
TGTAAAATATATATGTGTTATT
Found at i:32604526 original size:18 final size:18
Alignment explanation
Indices: 32604505--32604539 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32604495 AAACTAAAGT
* *
32604505 AAAAATAAAAGATAAAAC
1 AAAAAAAAAACATAAAAC
32604523 AAAAAAAAAACATAAAA
1 AAAAAAAAAACATAAAA
32604540 AGAAACAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.83, C:0.06, G:0.03, T:0.09
Consensus pattern (18 bp):
AAAAAAAAAACATAAAAC
Found at i:32605204 original size:15 final size:15
Alignment explanation
Indices: 32605181--32605213 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
32605171 TTTAAATTGT
*
32605181 TGTTTTTATTATATG
1 TGTTATTATTATATG
32605196 TGTTATTATTATATG
1 TGTTATTATTATATG
32605211 TGT
1 TGT
32605214 ATGGAAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.15, T:0.64
Consensus pattern (15 bp):
TGTTATTATTATATG
Found at i:32607858 original size:32 final size:32
Alignment explanation
Indices: 32607821--32607881 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
32607811 AATGCTTACC
32607821 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
32607853 ATGCCCATCATCCATTAACTATTAAAATG
1 ATGCCCATCATCCATTAACTATTAAAATG
32607882 ATAAAATGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:32608241 original size:28 final size:29
Alignment explanation
Indices: 32608210--32608272 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
32608200 TATTAAATTG
* *
32608210 AATGTATA-TGAATATG-TAATTATTGTGA
1 AATGGATATTGAA-ATGATAATTACTGTGA
32608238 AATGGATATTGAAATGATTAATTACTGTG-
1 AATGGATATTGAAATGA-TAATTACTGTGA
32608267 AATGGA
1 AATGGA
32608273 GAAATGAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 10 0.33
29 10 0.33
30 10 0.33
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.38
Consensus pattern (29 bp):
AATGGATATTGAAATGATAATTACTGTGA
Found at i:32611318 original size:31 final size:31
Alignment explanation
Indices: 32611265--32611330 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
32611255 GATAAGCACA
* * *
32611265 AAATTAAGAATAAGCGTTAAGTTCAGGTATC
1 AAATTAAGAAAAAGCGTCAAGTTCAGGTACC
* * *
32611296 AAATTAGGAAAAAGTGTCAAGTTTAGGTACC
1 AAATTAAGAAAAAGCGTCAAGTTCAGGTACC
32611327 AAAT
1 AAAT
32611331 GTTATATTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.27
Consensus pattern (31 bp):
AAATTAAGAAAAAGCGTCAAGTTCAGGTACC
Found at i:32614158 original size:20 final size:20
Alignment explanation
Indices: 32614133--32614173 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32614123 CCTAATTTCT
*
32614133 TTTAAATCTATATATATATA
1 TTTAAAACTATATATATATA
* *
32614153 TTTAAAACTTTATGTATATA
1 TTTAAAACTATATATATATA
32614173 T
1 T
32614174 AATATATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.51
Consensus pattern (20 bp):
TTTAAAACTATATATATATA
Found at i:32621763 original size:18 final size:19
Alignment explanation
Indices: 32621719--32621757 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
32621709 ATTTTATTTG
32621719 AAGTAAATTTTAAAAACATA
1 AAGTAAATTTT-AAAACATA
32621739 AAGTAAATTTT-AAACATA
1 AAGTAAATTTTAAAACATA
32621757 A
1 A
32621758 TTTAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.42
20 11 0.58
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (19 bp):
AAGTAAATTTTAAAACATA
Found at i:32622026 original size:18 final size:18
Alignment explanation
Indices: 32621981--32622068 Score: 67
Period size: 18 Copynumber: 4.9 Consensus size: 18
32621971 TTTTAAAATT
32621981 AATAATAT-AAATTAAATA
1 AATAATATAAAATTAAA-A
* *
32621999 AACAAAATAAAA-TAAGAA
1 AATAATATAAAATTAA-AA
32622017 AATAATATAAAACTTAAAA
1 AATAATATAAAA-TTAAAA
* *
32622036 AATAA-AAAAAATTAAGA
1 AATAATATAAAATTAAAA
* *
32622053 AA-AAGACAAAATTAAA
1 AATAATATAAAATTAAA
32622069 TAAAAAAGTA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
16 2 0.04
17 16 0.28
18 25 0.44
19 11 0.19
20 3 0.05
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (18 bp):
AATAATATAAAATTAAAA
Found at i:32622203 original size:21 final size:21
Alignment explanation
Indices: 32622177--32622218 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32622167 TTTTCAAAAA
32622177 TAAAAAAAAAGTTAAA-AAATT
1 TAAAAAAAAA-TTAAAGAAATT
*
32622198 TAAAAAGAAATTAAAGAAATT
1 TAAAAAAAAATTAAAGAAATT
32622219 GTATTTACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (21 bp):
TAAAAAAAAATTAAAGAAATT
Found at i:32622289 original size:14 final size:14
Alignment explanation
Indices: 32622270--32622296 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32622260 AAAACTATGG
32622270 TTAATATTTAAAAA
1 TTAATATTTAAAAA
32622284 TTAATATTTAAAA
1 TTAATATTTAAAA
32622297 TTTTCAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAATATTTAAAAA
Found at i:32622311 original size:37 final size:37
Alignment explanation
Indices: 32622275--32622414 Score: 114
Period size: 37 Copynumber: 3.9 Consensus size: 37
32622265 TATGGTTAAT
* *
32622275 ATTT-AAAAAT-TAATATTTAAAAT-TTTCAAAAATTA
1 ATTTGAAAAATAT-ATATTTAAAATATATAAAAAATTA
*
32622310 ATTTGAAAAATATATTTTTAAAATATATAAAAAATTA
1 ATTTGAAAAATATATATTTAAAATATATAAAAAATTA
* * * *
32622347 ATTTCACAAATATATATCTAAAGT-TA-AAAAAA-TA
1 ATTTGAAAAATATATATTTAAAATATATAAAAAATTA
* * * * *
32622381 TTTTTAAAAATA-ATAATTAAAATTTTTAAAAAAT
1 ATTTGAAAAATATATATTTAAAATATATAAAAAAT
32622415 ATTATAAAAC
Statistics
Matches: 84, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
33 8 0.10
34 12 0.14
35 16 0.19
36 18 0.21
37 30 0.36
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (37 bp):
ATTTGAAAAATATATATTTAAAATATATAAAAAATTA
Found at i:32622428 original size:23 final size:22
Alignment explanation
Indices: 32622375--32622468 Score: 61
Period size: 22 Copynumber: 4.2 Consensus size: 22
32622365 TAAAGTTAAA
32622375 AAAATATTTTTAAAAATAATAAT
1 AAAA-ATTTTTAAAAATAATAAT
* *
32622398 TAAAATTTTTAAAAA-ATATTAT
1 AAAAATTTTTAAAAATA-ATAAT
*
32622420 AAAACA-TTTTAAATATACAT--T
1 AAAA-ATTTTTAAAAATA-ATAAT
* **
32622441 ACAAATTTTTTAAAGTTAATAAT
1 A-AAAATTTTTAAAAATAATAAT
32622464 AAAAA
1 AAAAA
32622469 ATAAAAAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
21 5 0.09
22 41 0.75
23 9 0.16
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.39
Consensus pattern (22 bp):
AAAAATTTTTAAAAATAATAAT
Found at i:32622478 original size:9 final size:9
Alignment explanation
Indices: 32622458--32622529 Score: 65
Period size: 9 Copynumber: 7.9 Consensus size: 9
32622448 TTTTAAAGTT
32622458 AATAATAAAA
1 AATAA-AAAA
32622468 AATAAAAAAA
1 AAT-AAAAAA
*
32622478 AATAAACAA
1 AATAAAAAA
* *
32622487 AAT-GAAAT
1 AATAAAAAA
*
32622495 AAGAAAAAA
1 AATAAAAAA
*
32622504 AATCAAAAA
1 AATAAAAAA
*
32622513 AGTAAAAAA
1 AATAAAAAA
32622522 AATAAAAA
1 AATAAAAA
32622530 GACAATTTAT
Statistics
Matches: 48, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
8 4 0.08
9 32 0.67
10 10 0.21
11 2 0.04
ACGTcount: A:0.81, C:0.03, G:0.04, T:0.12
Consensus pattern (9 bp):
AATAAAAAA
Found at i:32622483 original size:17 final size:17
Alignment explanation
Indices: 32622464--32622529 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
32622454 AGTTAATAAT
*
32622464 AAAAAATAAAAAAAAATA
1 AAAAAATCAAAAAAAA-A
* * *
32622482 AACAAAATGAAATAAGAA
1 AA-AAAATCAAAAAAAAA
*
32622500 AAAAAATCAAAAAAGTAA
1 AAAAAATCAAAAAA-AAA
32622518 AAAAAAT-AAAAA
1 AAAAAATCAAAAA
32622530 GACAATTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
17 15 0.38
18 14 0.35
19 11 0.28
ACGTcount: A:0.82, C:0.03, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAAAATCAAAAAAAAA
Found at i:32622597 original size:9 final size:10
Alignment explanation
Indices: 32622555--32622617 Score: 50
Period size: 10 Copynumber: 6.9 Consensus size: 10
32622545 AACAAAATAA
32622555 AAAAGTAAAAT
1 AAAAG-AAAAT
32622566 AAAAG-AAAT
1 AAAAGAAAAT
*
32622575 --ATGAAAAT
1 AAAAGAAAAT
32622583 AAAAGAAAA-
1 AAAAGAAAAT
32622592 AAAAG-AAAT
1 AAAAGAAAAT
*
32622601 --ATGAAAAT
1 AAAAGAAAAT
32622609 AAAAGAAAA
1 AAAAGAAAA
32622618 AGAGAATGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 15
0.68 0.07 0.25
Matches are distributed among these distances:
7 4 0.10
8 11 0.27
9 9 0.22
10 12 0.29
11 5 0.12
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (10 bp):
AAAAGAAAAT
Found at i:32622600 original size:26 final size:26
Alignment explanation
Indices: 32622555--32622618 Score: 110
Period size: 26 Copynumber: 2.4 Consensus size: 26
32622545 AACAAAATAA
32622555 AAAAGTAAAATAAAAGAAATATGAAAAT
1 AAAAG-AAAA-AAAAGAAATATGAAAAT
32622583 AAAAGAAAAAAAAGAAATATGAAAAT
1 AAAAGAAAAAAAAGAAATATGAAAAT
32622609 AAAAGAAAAA
1 AAAAGAAAAA
32622619 GAGAATGTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 27 0.75
27 4 0.11
28 5 0.14
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.12
Consensus pattern (26 bp):
AAAAGAAAAAAAAGAAATATGAAAAT
Found at i:32625406 original size:56 final size:55
Alignment explanation
Indices: 32625326--32625432 Score: 187
Period size: 56 Copynumber: 1.9 Consensus size: 55
32625316 AAATTATAGA
**
32625326 TTACAAATTAATTATTCATGAGCACTATTCAAATTAAAAGTGATGATTTATAATC
1 TTACAAATTAATTATTCACAAGCACTATTCAAATTAAAAGTGATGATTTATAATC
32625381 TTACAAATTTAATTATTCACAAGCACTATTCAAATTAAAAGTGATGATTTAT
1 TTACAAA-TTAATTATTCACAAGCACTATTCAAATTAAAAGTGATGATTTAT
32625433 CTTCCAATGG
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
55 7 0.14
56 42 0.86
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.38
Consensus pattern (55 bp):
TTACAAATTAATTATTCACAAGCACTATTCAAATTAAAAGTGATGATTTATAATC
Found at i:32627955 original size:47 final size:46
Alignment explanation
Indices: 32627894--32628072 Score: 170
Period size: 46 Copynumber: 3.8 Consensus size: 46
32627884 TATGAGAGCC
32627894 AGTGTAAGACCATGTCTT-GGACATGACATCGGCATCGAGACGAGTGCT
1 AGTGTAAGACCATGT-TTGGGACATG-CATCGGCATCGAGACGA-TGCT
* * * * *
32627942 AGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCAAGACGTAAGCT
1 AGTGTAAGACCATGTTTGGGACATGCATCGGCATCGAGACG-ATGCT
* * * * *
32627988 AGTGTGAGA-CATGTTTGGGACATGCATCAG-TTACGAGATGATGGT
1 AGTGTAAGACCATGTTTGGGACATGCATCGGCAT-CGAGACGATGCT
32628033 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT-GAGA
1 -AGTGTAAGACCATGTTTGGGACAT-GCATCGGCATCGAGA
32628073 TATGAGCTAG
Statistics
Matches: 107, Mismatches: 17, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
45 4 0.04
46 56 0.52
47 31 0.29
48 15 0.14
49 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTTTGGGACATGCATCGGCATCGAGACGATGCT
Found at i:32627998 original size:46 final size:46
Alignment explanation
Indices: 32627845--32628015 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
32627835 GTTATTGTGG
** * ** *
32627845 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGAGA
* * * * *
32627891 GCCAGTGTAAGACCATGTCTTGGACATGACATCGGCATCGAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCAAGACGAGA
*
32627939 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCAAGACGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACG-AGA
* *
32627985 GCTAGTGTGAGACATGTTTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
32628016 AGTTACGAGA
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 52 0.51
47 29 0.28
48 21 0.21
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGAGA
Found at i:32628097 original size:140 final size:140
Alignment explanation
Indices: 32627845--32628105 Score: 325
Period size: 140 Copynumber: 1.9 Consensus size: 140
32627835 GTTATTGTGG
*
32627845 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACATGATGAGAGCCAGTGTAAGACCATGTC
* **
32627910 TTGGACATGACATCGGCATCGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCT
66 TTGGACATGACATCGGCATCGAGACGAGAGCTAGCATAAGACATGTCTGGGACATGCATTGGCCT
32627975 CAAGACGTAA
131 CAAGACGTAA
* * *** *
32627985 GCTAGTGTGAGACATGTTTGGGACATGCATCAGTTACGA-GATGATG-GTCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCAC-ATGATGA-GAGCCAGTGTAAGACCATG
* * *
32628048 T-TTGGGACATGGCATCGGCAT-GAGA-TATGAGCTAGCATAAGACTGTGTCTGGGACATG
64 TCTT-GGACATGACATCGGCATCGAGACGA-GAGCTAGCATAAGAC-ATGTCTGGGACATG
32628106 GCACCGGCAC
Statistics
Matches: 103, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 82 0.80
141 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (140 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACCACATGATGAGAGCCAGTGTAAGACCATGTC
TTGGACATGACATCGGCATCGAGACGAGAGCTAGCATAAGACATGTCTGGGACATGCATTGGCCT
CAAGACGTAA
Found at i:32629298 original size:21 final size:21
Alignment explanation
Indices: 32629259--32629298 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32629249 TCGAAATGGT
* **
32629259 CACACGAGTGTGTTGCCCTTC
1 CACACGAGCGTGTACCCCTTC
32629280 CACACGAGCGTGTACCCCT
1 CACACGAGCGTGTACCCCT
32629299 AGGTCAAGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.23
Consensus pattern (21 bp):
CACACGAGCGTGTACCCCTTC
Found at i:32635655 original size:46 final size:47
Alignment explanation
Indices: 32635549--32635731 Score: 207
Period size: 47 Copynumber: 3.9 Consensus size: 47
32635539 CAACCACATT
*
32635549 ATGAGAGCTAGTGTAAGACCATGTCTT-GGACATGGCATCGGCATCGAG
1 ATGATAGCTAGTGTAAGACCATGT-TTGGGACATGGCATCGGCAT-GAG
*
32635597 ACGAGT-GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTATGAG
1 ATGA-TAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC-ATGAG
* * *
32635643 ATGATAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACATGAG
1 ATGATAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGAG
* * *
32635690 AT-ATGAGCTAGTGTAAGACCGTGTCTGGGA-ATGGCATTGGCA
1 ATGAT-AGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
32635732 CCTTACCCAC
Statistics
Matches: 118, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
45 1 0.01
46 39 0.33
47 56 0.47
48 22 0.19
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (47 bp):
ATGATAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATGAG
Found at i:32640744 original size:28 final size:28
Alignment explanation
Indices: 32640704--32640785 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
32640694 GCAATCAAAT
* * *
32640704 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
32640732 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
32640760 ATGACACTTAGTGTGCAAAATATTGA
1 ATGGCACTTAGTGTGCGAAATATTGA
32640786 ATGATTCAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:32642984 original size:2 final size:2
Alignment explanation
Indices: 32642977--32643009 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
32642967 ACAAAATTAA
32642977 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32643010 AAGTAACTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32645852 original size:13 final size:13
Alignment explanation
Indices: 32645836--32645861 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32645826 AATAATTTTC
32645836 CTTCCTAAATCAT
1 CTTCCTAAATCAT
32645849 CTTCCTAAATCAT
1 CTTCCTAAATCAT
32645862 ATTATATCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (13 bp):
CTTCCTAAATCAT
Found at i:32645853 original size:17 final size:17
Alignment explanation
Indices: 32645820--32645854 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32645810 GCACATATGG
*
32645820 TTCCTAAATAATTTTCC
1 TTCCTAAATAATCTTCC
*
32645837 TTCCTAAATCATCTTCC
1 TTCCTAAATAATCTTCC
32645854 T
1 T
32645855 AAATCATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.46
Consensus pattern (17 bp):
TTCCTAAATAATCTTCC
Found at i:32649026 original size:14 final size:14
Alignment explanation
Indices: 32649007--32649033 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32648997 CAAACAATCT
32649007 CATGTTTCATGAAG
1 CATGTTTCATGAAG
32649021 CATGTTTCATGAA
1 CATGTTTCATGAA
32649034 AGAACAAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (14 bp):
CATGTTTCATGAAG
Found at i:32650855 original size:40 final size:40
Alignment explanation
Indices: 32650807--32650889 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 40
32650797 GGCTAAAAAA
*
32650807 ATGGCACTTACTGTACGGTTCGAAATAGCTTCGGCTAAAT
1 ATGGCACTTACTGTACGATTCGAAATAGCTTCGGCTAAAT
** * * *
32650847 ATGGCACTTGGTGTACGATTGGAGATAGCTTCGGCTAGAT
1 ATGGCACTTACTGTACGATTCGAAATAGCTTCGGCTAAAT
32650887 ATG
1 ATG
32650890 TATATGGCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (40 bp):
ATGGCACTTACTGTACGATTCGAAATAGCTTCGGCTAAAT
Found at i:32650962 original size:28 final size:27
Alignment explanation
Indices: 32650883--32650971 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 27
32650873 AGCTTCGGCT
32650883 AGATATGT-ATATGGCACTTAGTGTGCA
1 AGATAT-TAATATGGCACTTAGTGTGCA
* * * * *
32650910 AAATATTAATAATGACAATTGGTGTGCG
1 AGATATTAAT-ATGGCACTTAGTGTGCA
*
32650938 AGATATTAAGTATGGCACTTAGTGTACA
1 AGATATTAA-TATGGCACTTAGTGTGCA
32650966 AGATAT
1 AGATAT
32650972 CGAAGATGCA
Statistics
Matches: 48, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
26 1 0.02
27 7 0.15
28 39 0.81
29 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (27 bp):
AGATATTAATATGGCACTTAGTGTGCA
Found at i:32653800 original size:14 final size:15
Alignment explanation
Indices: 32653771--32653802 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
32653761 AGACTTCAAT
32653771 TTTAAATTTGTGTTA
1 TTTAAATTTGTGTTA
32653786 TTTAAATTT-TGTTA
1 TTTAAATTTGTGTTA
32653800 TTT
1 TTT
32653803 TTATTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (15 bp):
TTTAAATTTGTGTTA
Found at i:32660040 original size:13 final size:13
Alignment explanation
Indices: 32660024--32660053 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
32660014 CAGTTTGATC
32660024 AGTCAAGAAATTA
1 AGTCAAGAAATTA
32660037 AGTCAAGAAATTA
1 AGTCAAGAAATTA
32660050 AGTC
1 AGTC
32660054 TTGTCATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.23
Consensus pattern (13 bp):
AGTCAAGAAATTA
Found at i:32670860 original size:51 final size:51
Alignment explanation
Indices: 32670723--32670914 Score: 197
Period size: 51 Copynumber: 3.8 Consensus size: 51
32670713 TAAAATGGTT
* * * *
32670723 TTAGGTCACGTGCGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAG-
1 TTAGGTCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTACCAGATAGC
* * * * *
32670773 TTAGGTCGCATGTGTAGTACTAACTGTAGGCTACTATGTGTACCCGATAGC
1 TTAGGTCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTACCAGATAGC
* * * **
32670824 TTCGATCACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGC
1 TTAGGTCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTACCAGATAGC
* * * * * *
32670875 TTTGGTCACAAGTGTGGTACCATGTGAAGGCCACTTTGTG
1 TTAGGTCACATGTGTGGTACTAAGTGTAGGCCACTATGTG
32670915 AAGAAGGTAG
Statistics
Matches: 119, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 45 0.38
51 74 0.62
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (51 bp):
TTAGGTCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTACCAGATAGC
Found at i:32670926 original size:51 final size:51
Alignment explanation
Indices: 32670800--32670958 Score: 176
Period size: 51 Copynumber: 3.1 Consensus size: 51
32670790 TACTAACTGT
* *** * * *
32670800 AGGCTACTATGTGTACCCGATAGCTTCGATCACATGTGTGGTACTAAGTGC
1 AGGCCACTATGTGTAAAAGATAGCTTTGATCACAAGTGTGGTACTATGTGC
* * *
32670851 AGGCCACTATGTGTAAAAGATAGCTTTGGTCACAAGTGTGGTACCATGTGA
1 AGGCCACTATGTGTAAAAGATAGCTTTGATCACAAGTGTGGTACTATGTGC
* * * *
32670902 AGGCCACTTTGTG-AAGAAGGTAGCTTTGATTACAAGGGTGGTACTATGTGC
1 AGGCCACTATGTGTAA-AAGATAGCTTTGATCACAAGTGTGGTACTATGTGC
32670953 AGGCCA
1 AGGCCA
32670959 TTAGGCATCC
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
50 2 0.02
51 88 0.98
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (51 bp):
AGGCCACTATGTGTAAAAGATAGCTTTGATCACAAGTGTGGTACTATGTGC
Found at i:32676209 original size:40 final size:40
Alignment explanation
Indices: 32676102--32676318 Score: 194
Period size: 40 Copynumber: 5.5 Consensus size: 40
32676092 CGGATGATAA
* * * * *
32676102 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATA-T
* * *
32676142 CTGGGCTAA-GCCCGAAGGCAATT-GTGCGAGTTATTATAC
1 CCGGGCTAATTCCCGAAGGC-ATTCGTGCGAGTTATTATAT
* *
32676181 CCGGGCTAATTCTCGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATAT
* * * *
32676221 TCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATAT
* *
32676261 CCGGGCT-ATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAT-TCCCGAAGGCATTCGTGCGAGTTA-TTATAT
* *
32676301 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAATTCCCGAAGG
32676319 TACTTGGCTT
Statistics
Matches: 147, Mismatches: 23, Indels: 15
0.79 0.12 0.08
Matches are distributed among these distances:
39 45 0.31
40 102 0.69
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATAT
Found at i:32676267 original size:80 final size:79
Alignment explanation
Indices: 32676102--32676292 Score: 235
Period size: 80 Copynumber: 2.4 Consensus size: 79
32676092 CGGATGATAA
* * *
32676102 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCGAAGGCAATTGT
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAATTCTGGGCTAAGCCCGAAGGCAATTGT
*
32676167 GCGAGTTATTATAC
66 GCGAGTTACTATAC
* * * *
32676181 CCGGGCTAATTCTCGAAGGCATTCGTGCGAGTTATTATGTTC-GGGCTAAGTCCCGAAGGC-ATT
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTA-ATTCTGGGCTAAG-CCCGAAGGCAATT
*
32676244 GGTGCGAGTTACTATAT
64 -GTGCGAGTTACTATAC
*
32676261 CCGGGCT-ATGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAT-TCCCGAAGGCATTCGTGCGAGT
32676293 AGCTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
79 44 0.45
80 53 0.55
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (79 bp):
CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAATTCTGGGCTAAGCCCGAAGGCAATTGT
GCGAGTTACTATAC
Found at i:32676317 original size:119 final size:119
Alignment explanation
Indices: 32676103--32676318 Score: 269
Period size: 119 Copynumber: 1.8 Consensus size: 119
32676093 GGATGATAAC
* * * *
32676103 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCGAAGGCAATTGTG
1 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGAG
* * *
32676168 CGAGTTATTATACCCGGGCTAATTCTCGAAGGCATTCGTGCGAGTTATTATGTT
66 CGAGTTACTATACCCGGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGTT
* *
32676222 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATATCCGGGCTATGTCCCGAAGGC-ATTC
1 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCAATT-
* *
32676285 GAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
63 GAGCGAGTTA-CTATACCCGGGCTAAATCCCGAAGG
32676319 TACTTGGCTT
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
118 2 0.02
119 59 0.72
120 21 0.26
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (119 bp):
CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGAG
CGAGTTACTATACCCGGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGTT
Found at i:32684415 original size:51 final size:51
Alignment explanation
Indices: 32684278--32684469 Score: 197
Period size: 51 Copynumber: 3.8 Consensus size: 51
32684268 TAAAATGGTT
* * * *
32684278 TTAGGTCACGTGCGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAG-
1 TTAGGTCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTACCAGATAGC
* * * * *
32684328 TTAGGTCGCATGTGTAGTACTAACTGTAGGCTACTATGTGTACCCGATAGC
1 TTAGGTCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTACCAGATAGC
* * * **
32684379 TTCGATCACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGC
1 TTAGGTCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTACCAGATAGC
* * * * * *
32684430 TTTGGTCACAAGTGTGGTACCATGTGAAGGCCACTTTGTG
1 TTAGGTCACATGTGTGGTACTAAGTGTAGGCCACTATGTG
32684470 AAGAAGGTAG
Statistics
Matches: 119, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 45 0.38
51 74 0.62
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (51 bp):
TTAGGTCACATGTGTGGTACTAAGTGTAGGCCACTATGTGTACCAGATAGC
Found at i:32684481 original size:51 final size:51
Alignment explanation
Indices: 32684355--32684513 Score: 176
Period size: 51 Copynumber: 3.1 Consensus size: 51
32684345 TACTAACTGT
* *** * * *
32684355 AGGCTACTATGTGTACCCGATAGCTTCGATCACATGTGTGGTACTAAGTGC
1 AGGCCACTATGTGTAAAAGATAGCTTTGATCACAAGTGTGGTACTATGTGC
* * *
32684406 AGGCCACTATGTGTAAAAGATAGCTTTGGTCACAAGTGTGGTACCATGTGA
1 AGGCCACTATGTGTAAAAGATAGCTTTGATCACAAGTGTGGTACTATGTGC
* * * *
32684457 AGGCCACTTTGTG-AAGAAGGTAGCTTTGATTACAAGGGTGGTACTATGTGC
1 AGGCCACTATGTGTAA-AAGATAGCTTTGATCACAAGTGTGGTACTATGTGC
32684508 AGGCCA
1 AGGCCA
32684514 TTAGGCATCC
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
50 2 0.02
51 88 0.98
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (51 bp):
AGGCCACTATGTGTAAAAGATAGCTTTGATCACAAGTGTGGTACTATGTGC
Found at i:32689928 original size:40 final size:40
Alignment explanation
Indices: 32689822--32690037 Score: 217
Period size: 40 Copynumber: 5.5 Consensus size: 40
32689812 GGATGATAAT
* * *
32689822 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-TC
* * *
32689862 TGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATACC
1 CGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATATC
* * *
32689901 CGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGTC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
* *
32689941 CGGGCTTAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
* **
32689981 CGGGCTATGTCCCGAAGGCATTCAAGCGAG-TAGCTATAT-
1 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATATC
* * *
32690020 CTGGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
32690038 TACTTGGCTT
Statistics
Matches: 148, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
39 46 0.31
40 102 0.69
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATC
Found at i:32701068 original size:11 final size:10
Alignment explanation
Indices: 32701030--32701070 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
32701020 GCCTAATCCC
32701030 AAATAAAT-A
1 AAATAAATAA
32701039 AAATAAAATAA
1 AAAT-AAATAA
32701050 AAATAAATAA
1 AAATAAATAA
32701060 ATAATAAATAA
1 A-AATAAATAA
32701071 TAAAACAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 4 0.14
10 11 0.38
11 14 0.48
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (10 bp):
AAATAAATAA
Found at i:32701072 original size:14 final size:14
Alignment explanation
Indices: 32701030--32701083 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
32701020 GCCTAATCCC
*
32701030 AAATAAATA-AAAT
1 AAATAAAAATAAAT
32701043 AAAATAAAAATAAAT
1 -AAATAAAAATAAAT
32701058 AAATAATAAAT-AAT
1 AAATAA-AAATAAAT
32701072 AAA-ACAAAATAA
1 AAATA-AAAATAA
32701084 TTTCTTCTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
13 5 0.14
14 22 0.63
15 8 0.23
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATAAAAATAAAT
Found at i:32701072 original size:24 final size:24
Alignment explanation
Indices: 32701030--32701083 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
32701020 GCCTAATCCC
32701030 AAATAAATAAAATAAAATAAAA-A
1 AAATAAATAAAATAAAATAAAACA
*
32701053 TAAATAAATAATAA-ATAATAAAACA
1 -AAATAAATAA-AATAAAATAAAACA
32701078 AAATAA
1 AAATAA
32701084 TTTCTTCTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (24 bp):
AAATAAATAAAATAAAATAAAACA
Found at i:32707271 original size:30 final size:30
Alignment explanation
Indices: 32707237--32707297 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
32707227 TCCAAACAAC
32707237 AATAATGAGACTTTCCAGCTAAACGTTCTA
1 AATAATGAGACTTTCCAGCTAAACGTTCTA
32707267 AATAATGAGACTTTCCAGCTAAACGTTCTA
1 AATAATGAGACTTTCCAGCTAAACGTTCTA
32707297 A
1 A
32707298 CATCTGGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.30
Consensus pattern (30 bp):
AATAATGAGACTTTCCAGCTAAACGTTCTA
Found at i:32717667 original size:49 final size:49
Alignment explanation
Indices: 32717559--32717687 Score: 125
Period size: 49 Copynumber: 2.6 Consensus size: 49
32717549 ATTTAAGTCG
* * *
32717559 ATGCCATGTCCCATACAGGTCTTACACTGACTTTCATATATCGAGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCA
* ** * * * *
32717608 ATACTTTGTCCCAGACAGGTCTTACATTGGCTCTCATCTATCG-GTGTCA
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG-GCCA
** *
32717657 ATGCCATGTCCTGGACAAGTCTTACACTGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGAC
32717688 ACATGTCAAG
Statistics
Matches: 61, Mismatches: 18, Indels: 2
0.75 0.22 0.02
Matches are distributed among these distances:
48 1 0.02
49 60 0.98
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGCCA
Found at i:32722973 original size:46 final size:44
Alignment explanation
Indices: 32722877--32723180 Score: 292
Period size: 46 Copynumber: 6.6 Consensus size: 44
32722867 AGGCCAATGC
* *
32722877 CATGTCCCAGACATGGTCTTACACTGAC-ATGTCTCGAAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTACGTCTC-AAGCCGATG
*
32722922 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGC-TACGTCTCAA-GCCGATG
* *
32722968 CATGTCCTAGACATGTCTTACACTGGC-ACTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTA--CGTCTCAA-GCCGATG
* * * *
32723014 CCATGTCCCAGACATGGTCTTACACTGAC-ATGTCTCGTAGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTACGTCTC-AAGCCGATG
* * *
32723060 CATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGC-TACGTCTC-AAGCCGATG
32723106 CATGTCCCAGACATGTCTTACACTGGC-ACTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTA--CGTCTCAA-GCCGATG
* * *
32723152 CCATCTCCCAGACCTGGTTTTACACTGGC
1 -CATGTCCCAGACAT-GTCTTACACTGGC
32723181 ACACAAATTA
Statistics
Matches: 218, Mismatches: 26, Indels: 27
0.80 0.10 0.10
Matches are distributed among these distances:
44 25 0.11
45 31 0.14
46 111 0.51
47 26 0.12
48 25 0.11
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTACGTCTCAAGCCGATG
Found at i:32723121 original size:138 final size:138
Alignment explanation
Indices: 32722873--32723178 Score: 515
Period size: 138 Copynumber: 2.2 Consensus size: 138
32722863 ATCGAGGCCA
32722873 ATGCCATGTCCCAGACATGGTCTTACACTGACATGTCTCGAAGCCGATGCATGTCCCAGACATGT
1 ATGCCATGTCCCAGACATGGTCTTACACTGACATGTCTCGAAGCCGATGCATGTCCCAGACATGT
* *
32722938 CTTACACTGGCTTACGTCTCAAGGCTGATGCATGTCCTAGACATGTCTTACACTGGCACTCATCT
66 CTTACACTAGCTTACGTCTCAAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCT
32723003 CAATGCCG
131 CAATGCCG
* *
32723011 ATGCCATGTCCCAGACATGGTCTTACACTGACATGTCTCGTAGCTGATGCATGTCCCAGACATGT
1 ATGCCATGTCCCAGACATGGTCTTACACTGACATGTCTCGAAGCCGATGCATGTCCCAGACATGT
* *
32723076 CTTACACTAGCTTACGTCTCGAGG-TCGATGCATGTCCCAGACATGTCTTACACTGGCACTCGTC
66 CTTACACTAGCTTACGTCTCAAGGCT-GATGCATGTCCCAGACATGTCTTACACTGGCACTCATC
32723140 TCAATGCCG
130 TCAATGCCG
* * *
32723149 ATGCCATCTCCCAGACCTGGTTTTACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
32723179 GCACACAAAT
Statistics
Matches: 158, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
137 1 0.01
138 157 0.99
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (138 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACATGTCTCGAAGCCGATGCATGTCCCAGACATGT
CTTACACTAGCTTACGTCTCAAGGCTGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCT
CAATGCCG
Found at i:32723914 original size:12 final size:12
Alignment explanation
Indices: 32723897--32723921 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32723887 CAAAAATGTA
32723897 AAAATCATCAAG
1 AAAATCATCAAG
32723909 AAAATCATCAAG
1 AAAATCATCAAG
32723921 A
1 A
32723922 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:32726433 original size:26 final size:27
Alignment explanation
Indices: 32726400--32726460 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
32726390 ATTCACTAAA
32726400 ATACCCCTAAGAATG-AAAATTACCA-T
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
32726426 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
32726452 ATACCCCTA
1 ATACCCCTA
32726461 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 2 0.06
25 12 0.39
26 17 0.55
ACGTcount: A:0.39, C:0.28, G:0.08, T:0.25
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:32726609 original size:27 final size:27
Alignment explanation
Indices: 32726571--32726671 Score: 132
Period size: 27 Copynumber: 3.7 Consensus size: 27
32726561 AGCGTTCTAA
*
32726571 TGGCTTTGCCACAAATATCTG-ATCTGG
1 TGGCTCTGCCAC-AATATCTGTATCTGG
*
32726598 TGGCTCTGCCACAAATATCTGTTTCTGG
1 TGGCTCTGCCAC-AATATCTGTATCTGG
*
32726626 TGGCTCTACCACAATATCTGTATCTGG
1 TGGCTCTGCCACAATATCTGTATCTGG
* *
32726653 TGACTCTGTCACAATATCT
1 TGGCTCTGCCACAATATCT
32726672 ATTCTGGCAA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.76
28 16 0.24
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.35
Consensus pattern (27 bp):
TGGCTCTGCCACAATATCTGTATCTGG
Found at i:32736452 original size:7 final size:7
Alignment explanation
Indices: 32736417--32736471 Score: 51
Period size: 7 Copynumber: 7.7 Consensus size: 7
32736407 AATAAAAATT
32736417 ATTAATA
1 ATTAATA
32736424 ATTCAATTA
1 ATT-AA-TA
*
32736433 ATTGAAAA
1 ATT-AATA
32736441 ATTAATA
1 ATTAATA
32736448 ATTAA-A
1 ATTAATA
32736454 ATTAA-A
1 ATTAATA
*
32736460 ATTAAAA
1 ATTAATA
32736467 ATTAA
1 ATTAA
32736472 GAGAGACTAG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
6 12 0.29
7 17 0.40
8 6 0.14
9 7 0.17
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (7 bp):
ATTAATA
Found at i:32736456 original size:13 final size:13
Alignment explanation
Indices: 32736432--32736471 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
32736422 TAATTCAATT
32736432 AATTGAAAAATTAA
1 AATT-AAAAATTAA
32736446 TAATT-AAAATTAA
1 -AATTAAAAATTAA
32736459 AATTAAAAATTAA
1 AATTAAAAATTAA
32736472 GAGAGACTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.17
13 16 0.67
15 4 0.17
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
AATTAAAAATTAA
Found at i:32736458 original size:6 final size:6
Alignment explanation
Indices: 32736438--32736471 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
32736428 AATTAATTGA
32736438 AAAATT AATAATT AAAATT AAAATT AAAAATT AA
1 AAAATT AA-AATT AAAATT AAAATT -AAAATT AA
32736472 GAGAGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 14 0.54
7 12 0.46
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAAATT
Found at i:32747973 original size:80 final size:80
Alignment explanation
Indices: 32747840--32748000 Score: 322
Period size: 80 Copynumber: 2.0 Consensus size: 80
32747830 CCCTAATATC
32747840 TTTTCTGGTAAGAATTTTCGAGGACGAAAATTTCTAAAGAGGAGAGTTGTAACAGCCCATTTTTT
1 TTTTCTGGTAAGAATTTTCGAGGACGAAAATTTCTAAAGAGGAGAGTTGTAACAGCCCATTTTTT
32747905 GTGAGATCGGAACAG
66 GTGAGATCGGAACAG
32747920 TTTTCTGGTAAGAATTTTCGAGGACGAAAATTTCTAAAGAGGAGAGTTGTAACAGCCCATTTTTT
1 TTTTCTGGTAAGAATTTTCGAGGACGAAAATTTCTAAAGAGGAGAGTTGTAACAGCCCATTTTTT
32747985 GTGAGATCGGAACAG
66 GTGAGATCGGAACAG
32748000 T
1 T
32748001 GGTTTTGGGA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (80 bp):
TTTTCTGGTAAGAATTTTCGAGGACGAAAATTTCTAAAGAGGAGAGTTGTAACAGCCCATTTTTT
GTGAGATCGGAACAG
Found at i:32748041 original size:5 final size:5
Alignment explanation
Indices: 32748031--32748057 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
32748021 GAGTCAAAAA
32748031 ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT AT
32748058 GGTTGGCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:32749297 original size:57 final size:58
Alignment explanation
Indices: 32749161--32749315 Score: 161
Period size: 57 Copynumber: 2.7 Consensus size: 58
32749151 GAATAATAGT
* * * * *
32749161 GCATATGTTACAGATAGAATTTAGCACGGACGAGTAATTCTAATGTAAGCCCTCTTGA
1 GCATATGTTATAGATAGGATTTAGCACGGACGGGTAATCCAAATGTAAGCCCTCTTGA
* * * * *
32749219 GCTTAGGTTATAAATTA-GATTTAGCCCGGACGGGTAATCCAAAT-TAAGCTCTCTTGA
1 GCATATGTTATAGA-TAGGATTTAGCACGGACGGGTAATCCAAATGTAAGCCCTCTTGA
* ** *
32749276 GCATATGCTATAGATAGGATTTAGCTTGGACTGGTAATCC
1 GCATATGTTATAGATAGGATTTAGCACGGACGGGTAATCC
32749316 TACTGTAAAA
Statistics
Matches: 78, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
56 2 0.03
57 42 0.54
58 32 0.41
59 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (58 bp):
GCATATGTTATAGATAGGATTTAGCACGGACGGGTAATCCAAATGTAAGCCCTCTTGA
Found at i:32753167 original size:50 final size:49
Alignment explanation
Indices: 32753054--32753278 Score: 315
Period size: 49 Copynumber: 4.5 Consensus size: 49
32753044 CTAGTACGCA
*
32753054 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* ** * *
32753103 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCCGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * *
32753153 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
* *
32753204 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
32753253 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
32753279 GGTAACCTCA
Statistics
Matches: 152, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 68 0.45
50 47 0.31
51 37 0.24
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:32761862 original size:46 final size:45
Alignment explanation
Indices: 32761794--32761963 Score: 162
Period size: 46 Copynumber: 3.7 Consensus size: 45
32761784 TGTAACCCGC
*
32761794 CCATAAGTGAACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
32761840 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * * *
32761886 ACATCTCTCGAACTCAGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* *
32761933 CCATAAGCGAACTCGTACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
32761964 TTTGGATGCC
Statistics
Matches: 96, Mismatches: 23, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
45 1 0.01
46 62 0.65
47 31 0.32
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:32761930 original size:93 final size:93
Alignment explanation
Indices: 32761802--32761973 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
32761792 GCCCATAAGT
* * * * * *
32761802 GAACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
32761867 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
32761895 GAACTCAGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGCGAACTCGTACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
* *
32761960 CGAGTTTGGATGCC
66 CGAGCTCGGATGCC
32761974 CAAATATCCT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:32766200 original size:14 final size:14
Alignment explanation
Indices: 32766181--32766208 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32766171 TGAACTACAT
32766181 AAACAATATAATGA
1 AAACAATATAATGA
32766195 AAACAATATAATGA
1 AAACAATATAATGA
32766209 TTTTTTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
AAACAATATAATGA
Found at i:32766446 original size:9 final size:9
Alignment explanation
Indices: 32766434--32766460 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
32766424 ATAACTTGAT
32766434 TAACTCAAA
1 TAACTCAAA
32766443 TAACTCAAA
1 TAACTCAAA
32766452 TAACTCAAA
1 TAACTCAAA
32766461 CTATTTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (9 bp):
TAACTCAAA
Found at i:32770452 original size:20 final size:20
Alignment explanation
Indices: 32770427--32770467 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
32770417 ATAACACATT
32770427 CATGGTGGGCGGCTTACTCC
1 CATGGTGGGCGGCTTACTCC
32770447 CATGGTGGGCGGCTTACTCC
1 CATGGTGGGCGGCTTACTCC
32770467 C
1 C
32770468 CTAAAGGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.10, C:0.32, G:0.34, T:0.24
Consensus pattern (20 bp):
CATGGTGGGCGGCTTACTCC
Found at i:32772558 original size:47 final size:47
Alignment explanation
Indices: 32772504--32772598 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
32772494 TTTTTTTTTA
32772504 TCATGAGTGTTTTTTAAACAGTAAATGATTAGTTATAAAATGTATTT
1 TCATGAGTGTTTTTTAAACAGTAAATGATTAGTTATAAAATGTATTT
32772551 TCATGAGTGTTTTTTAAACAGTAAATGATTAGTTATAAAATGTATTT
1 TCATGAGTGTTTTTTAAACAGTAAATGATTAGTTATAAAATGTATTT
32772598 T
1 T
32772599 ATTTTTATGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (47 bp):
TCATGAGTGTTTTTTAAACAGTAAATGATTAGTTATAAAATGTATTT
Found at i:32772655 original size:51 final size:51
Alignment explanation
Indices: 32772597--32772699 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
32772587 AAAATGTATT
* *
32772597 TTATTTTTATGAGTGGGGTTCGAAGTCCTATCCTATAATTAAGAAATAAGG
1 TTATTTTTATGAGTAGGGATCGAAGTCCTATCCTATAATTAAGAAATAAGG
32772648 TTATTTTTATGAGTAGGGATCGAAGTCCTATCCTATAATTAAGAAATAAGG
1 TTATTTTTATGAGTAGGGATCGAAGTCCTATCCTATAATTAAGAAATAAGG
32772699 T
1 T
32772700 AAGTAAGTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (51 bp):
TTATTTTTATGAGTAGGGATCGAAGTCCTATCCTATAATTAAGAAATAAGG
Found at i:32775153 original size:12 final size:13
Alignment explanation
Indices: 32775125--32775167 Score: 52
Period size: 12 Copynumber: 3.2 Consensus size: 13
32775115 GAGCTCCACA
32775125 TATTTTGTATAAC
1 TATTTTGTATAAC
*
32775138 TATTTT-TATTAC
1 TATTTTGTATAAC
32775150 TATTTTCAGTATAAC
1 TATTTT--GTATAAC
32775165 TAT
1 TAT
32775168 GCATGATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 11 0.44
13 6 0.24
15 8 0.32
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.56
Consensus pattern (13 bp):
TATTTTGTATAAC
Found at i:32777026 original size:47 final size:47
Alignment explanation
Indices: 32776967--32777096 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
32776957 AAAAGCTGCT
* **
32776967 AATACGTTGTGGATGAACCACTAGTCGAGCAGATGACCGTTGACTAA
1 AATACGTTGTGGATAAACCACTAGTCGAGCAGATGACCGCCGACTAA
* * * * *
32777014 AATATGTTGTGGATAAACCACTGGTCGAACAGATGACTGCCGACTAG
1 AATACGTTGTGGATAAACCACTAGTCGAGCAGATGACCGCCGACTAA
* *
32777061 AATACGTTGTGGATAAACCATTAGTCGAGTAGATGA
1 AATACGTTGTGGATAAACCACTAGTCGAGCAGATGA
32777097 ATTACCGACT
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (47 bp):
AATACGTTGTGGATAAACCACTAGTCGAGCAGATGACCGCCGACTAA
Found at i:32779545 original size:31 final size:30
Alignment explanation
Indices: 32779481--32779545 Score: 71
Period size: 30 Copynumber: 2.1 Consensus size: 30
32779471 TCATTTTAAA
* *
32779481 ATATTGATTCTAAATATAAAAAAGCTATTT
1 ATATTGATTCTAAATATAAAAAAGATATAT
32779511 ATATTGATTTCTAAA-ATAAATAAA-ATATCAT
1 ATATTGA-TTCTAAATATAAA-AAAGATAT-AT
32779542 ATAT
1 ATAT
32779546 AATGATAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
30 15 0.50
31 15 0.50
ACGTcount: A:0.49, C:0.06, G:0.05, T:0.40
Consensus pattern (30 bp):
ATATTGATTCTAAATATAAAAAAGATATAT
Found at i:32782206 original size:24 final size:24
Alignment explanation
Indices: 32782179--32782233 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
32782169 ATGTGAGTAA
*
32782179 GTATGCGAA-ACTTTAGGTAAATAT
1 GTATGCGAACAC-TTAGGTAAATAG
* *
32782203 GTATGCGAACACTTATGTACATAG
1 GTATGCGAACACTTAGGTAAATAG
32782227 GTATGCG
1 GTATGCG
32782234 GATTCTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 25 0.93
25 2 0.07
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.31
Consensus pattern (24 bp):
GTATGCGAACACTTAGGTAAATAG
Found at i:32782423 original size:26 final size:25
Alignment explanation
Indices: 32782376--32782457 Score: 83
Period size: 26 Copynumber: 3.2 Consensus size: 25
32782366 TTAGTACACA
** *
32782376 AACCCTATATGCAAACTCTATATGTG
1 AACCCTATATGTGAAC-CTATATGCG
32782402 AACCCTATATGTGAACCGTATATGCG
1 AACCCTATATGTGAACC-TATATGCG
* * *
32782428 AACCTTATGTGTGAACCTTATATGCA
1 AACCCTATATGTGAACC-TATATGCG
32782454 AACC
1 AACC
32782458 TGTTATGTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
25 1 0.02
26 47 0.98
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (25 bp):
AACCCTATATGTGAACCTATATGCG
Found at i:32782426 original size:39 final size:39
Alignment explanation
Indices: 32782376--32782451 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 39
32782366 TTAGTACACA
32782376 AACCCTATATGCAAA-CTCTATATGTGAACCCTATATGTG
1 AACCCTATATGCAAACCT-TATATGTGAACCCTATATGTG
* * * *
32782415 AACCGTATATGCGAACCTTATGTGTGAACCTTATATG
1 AACCCTATATGCAAACCTTATATGTGAACCCTATATG
32782452 CAAACCTGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 30 0.94
40 2 0.06
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (39 bp):
AACCCTATATGCAAACCTTATATGTGAACCCTATATGTG
Found at i:32782458 original size:13 final size:13
Alignment explanation
Indices: 32782376--32782458 Score: 69
Period size: 13 Copynumber: 6.4 Consensus size: 13
32782366 TTAGTACACA
*
32782376 AACCCTATATGC-
1 AACCTTATATGCG
* *
32782388 AAACTCTATATGTG
1 AACCT-TATATGCG
* *
32782402 AACCCTATATGTG
1 AACCTTATATGCG
*
32782415 AACCGTATATGCG
1 AACCTTATATGCG
* *
32782428 AACCTTATGTGTG
1 AACCTTATATGCG
*
32782441 AACCTTATATGCA
1 AACCTTATATGCG
32782454 AACCT
1 AACCT
32782459 GTTATGTATG
Statistics
Matches: 56, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
12 3 0.05
13 50 0.89
14 3 0.05
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (13 bp):
AACCTTATATGCG
Found at i:32787830 original size:47 final size:47
Alignment explanation
Indices: 32787767--32787969 Score: 298
Period size: 47 Copynumber: 4.3 Consensus size: 47
32787757 TGAATGTATA
*
32787767 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
32787814 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
*
32787861 TATATATGTGATGAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* * * * * * * * *
32787908 TTTATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
*
32787955 TATAAATGTGATAAG
1 TATATATGTGATAAG
32787970 TCCCGAAGGG
Statistics
Matches: 140, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 140 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
Found at i:32790291 original size:40 final size:40
Alignment explanation
Indices: 32790236--32790632 Score: 553
Period size: 40 Copynumber: 9.9 Consensus size: 40
32790226 CTCGACAATG
*
32790236 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
32790276 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
32790316 ATCCGGGCTATGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
*
32790356 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * *
32790396 ATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* *
32790436 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * *
32790476 ATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * * * *
32790516 ATCCAGGCTAAGTTCCAAAGAGCATTCGTGCTAGTAATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
* * * * *
32790556 ATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGTGATAT
* * *
32790596 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
32790633 CGTGTATTCG
Statistics
Matches: 319, Mismatches: 36, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.00
40 316 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
Found at i:32794612 original size:47 final size:47
Alignment explanation
Indices: 32794580--32794782 Score: 316
Period size: 47 Copynumber: 4.3 Consensus size: 47
32794570 AATGTATATA
32794580 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32794627 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32794674 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
32794721 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32794768 TATAAATGTGATAAG
1 TATATATGTGATAAG
32794783 TCCCGAAGGG
Statistics
Matches: 142, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 142 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:32796979 original size:38 final size:38
Alignment explanation
Indices: 32796915--32796989 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
32796905 AATCCGAGTT
*
32796915 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
32796953 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
32796990 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:32797396 original size:203 final size:201
Alignment explanation
Indices: 32797047--32797431 Score: 556
Period size: 203 Copynumber: 1.9 Consensus size: 201
32797037 CTCGACAATG
*
32797047 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCAT
* * * *
32797112 TCATGCTAGTGATATATCCGGGCTATGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTA
66 TCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATATATCCAGGCTA
* * *
32797177 AGTCCCGAAGAGCATTCGTGCTAGTGATATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTA
131 AGACCCGAAGAGCATTCGTGCTAGTG-T-TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
32797242 GTGATGTA
194 GTGATGTA
* * * *
32797250 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCAT
* * ** * *
32797315 TCGTGCTAGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTAATATATCCATGCTA
66 TCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATATATCCAGGCTA
* *
32797380 A-ACCTCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAG
131 AGACC-CGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAG
32797432 TAATCATGCT
Statistics
Matches: 161, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
201 22 0.14
202 3 0.02
203 136 0.84
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (201 bp):
ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCAT
TCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATATATCCAGGCTA
AGACCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
GATGTA
Found at i:32797445 original size:40 final size:40
Alignment explanation
Indices: 32797047--32797431 Score: 538
Period size: 40 Copynumber: 9.6 Consensus size: 40
32797037 CTCGACAATG
* *
32797047 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
32797087 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* * *
32797127 ATCCGGGCTATGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
32797167 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATA--T
* *
32797209 ATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* *
32797249 AATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGT
1 -ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* *
32797290 ATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
** *
32797330 ATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTAATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
** * * *
32797370 ATCCATGCTAA-ACCTCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGTGATAT
*
32797410 ATCCGGGCTAGGTCCCGAAGAG
1 ATCCGGGCTAAGTCCCGAAGAG
32797432 TAATCATGCT
Statistics
Matches: 311, Mismatches: 29, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
40 233 0.75
41 40 0.13
42 38 0.12
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:32797698 original size:58 final size:57
Alignment explanation
Indices: 32797629--32797737 Score: 164
Period size: 57 Copynumber: 1.9 Consensus size: 57
32797619 CGAATGATTA
* *
32797629 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTC-TTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
* * *
32797687 GAGGCACTGTGTGTGCGAGTTCTTCAACCAAGCACTATGTGTGCGAGATCG
1 GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCG
32797738 ATCAGTGGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 26 0.57
58 20 0.43
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
Found at i:32801433 original size:47 final size:47
Alignment explanation
Indices: 32801394--32801596 Score: 307
Period size: 47 Copynumber: 4.3 Consensus size: 47
32801384 TGTATATATA
32801394 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32801441 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
32801488 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
32801535 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
32801582 TATAAATCTGATAAG
1 TATATATGTGATAAG
32801597 TCCCGAAGGG
Statistics
Matches: 141, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 141 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:32804323 original size:48 final size:48
Alignment explanation
Indices: 32804151--32804438 Score: 317
Period size: 48 Copynumber: 6.0 Consensus size: 48
32804141 CAAAAGGGTA
* * * *
32804151 AGATGCTGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAT
1 AGATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT
* * * *
32804199 ATCGGTGCCGATGCCATGTTCCAAACATGGTATTACACTAGC-CAAATAT
1 A--GATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT
* * * *
32804248 CGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
1 AGATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT
* * * *
32804296 AAATGCCAATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATAT
1 AGATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT
* * * * ** **
32804344 CGAGGCTGATGCCATGTCCTAGTCATGGTCTTACACTAGCTCTTATAT
1 AGATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT
* *
32804392 AAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
1 AGATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
32804439 ACCTTAGTAT
Statistics
Matches: 193, Mismatches: 44, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
47 34 0.18
48 121 0.63
49 5 0.03
50 33 0.17
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
AGATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT
Found at i:32804376 original size:96 final size:96
Alignment explanation
Indices: 32804155--32804438 Score: 408
Period size: 96 Copynumber: 2.9 Consensus size: 96
32804145 AGGGTAAGAT
* * * **
32804155 GCTGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATATATCGGTGCCGATGCCATGTTC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA--AATGCCGATGCCATGTTC
* *
32804220 CAAACATGGTATTACACTAG-CCAAATATCGAG
64 CAAACATGGTCTTACACTAGCCCACATATCGAG
* *
32804252 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
32804317 AACATGGTCTTACACTAGCCCACATATCGAG
66 AACATGGTCTTACACTAGCCCACATATCGAG
* * * *
32804348 GCTGATGCCATGTCCTAGTCATGGTCTTACACTAGCTCTTATATAAATGCCGATGCCATGTCCCA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
* *
32804413 GACATGGTCTTACACTAGCTCACATA
66 AACATGGTCTTACACTAGCCCACATA
32804439 ACCTTAGTAT
Statistics
Matches: 169, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
95 34 0.20
96 94 0.56
97 41 0.24
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (96 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
AACATGGTCTTACACTAGCCCACATATCGAG
Found at i:32804427 original size:144 final size:145
Alignment explanation
Indices: 32804159--32804438 Score: 379
Period size: 144 Copynumber: 1.9 Consensus size: 145
32804149 TAAGATGCTG
* * *
32804159 ATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATATATCGGTGCCGATGCCATGTTCCAAA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCGGTGCCGATGCCATGTTCCAAA
**
32804224 CATGGTATTACACTAGCCAAATATCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 CATGGTATTACACTAGCCAAATATAAAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
*
32804289 CTCATATAAATGCCA
131 CACATATAAATGCCA
* *
32804304 ATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGAG-GCTGATGCCATG-TCCTA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCG-GTGCCGATGCCATGTTCC-A
** * ** *
32804365 GTCATGGTCTTACACTAGCTCTTATATAAATGCCGATGCCATGTCCCAGACATGGTCTTACACTA
64 AACATGGTATTACACTAGC-CAAATATAAAGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
32804430 GCTCACATA
128 GCTCACATA
32804439 ACCTTAGTAT
Statistics
Matches: 118, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
142 3 0.03
143 36 0.31
144 50 0.42
145 29 0.25
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (145 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCGGTGCCGATGCCATGTTCCAAA
CATGGTATTACACTAGCCAAATATAAAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
CACATATAAATGCCA
Found at i:32812843 original size:40 final size:40
Alignment explanation
Indices: 32812695--32812906 Score: 223
Period size: 40 Copynumber: 5.3 Consensus size: 40
32812685 CATTTGAATG
* * *
32812695 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * * * *
32812735 TTATCTGGGCTAAGTCCCGAAGGTATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
32812775 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
32812815 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * * ** *
32812855 ATACCCGAGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
32812895 ATATCC-GGCTAA
1 ATATCCGGGCTAA
32812907 ATTTCGAAGA
Statistics
Matches: 150, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 6 0.04
40 141 0.94
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:32817175 original size:44 final size:43
Alignment explanation
Indices: 32817098--32817244 Score: 152
Period size: 44 Copynumber: 3.4 Consensus size: 43
32817088 TTGGCACGTA
**
32817098 AGTGCATCATCGGATAAACTGAAGAAAATATACTAGTGCACAC
1 AGTGCATCATCGGATAAACTGAAGAAAATATACTAGCACACAC
** * *
32817141 AGTGCATCATCGGATGAAACTGAAGCTACTATACTGGCACACAC
1 AGTGCATCATCGGAT-AAACTGAAGAAAATATACTAGCACACAC
* * * * * *
32817185 AGTGCATCATCAGATATACCT-AAAAGAAATATACTAACACATAT
1 AGTGCATCATCGGATA-AACTGAAGA-AAATATACTAGCACACAC
32817229 AGTGCATCATCGGATA
1 AGTGCATCATCGGATA
32817245 TACCAAAGTA
Statistics
Matches: 84, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
43 18 0.21
44 66 0.79
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.22
Consensus pattern (43 bp):
AGTGCATCATCGGATAAACTGAAGAAAATATACTAGCACACAC
Found at i:32821060 original size:16 final size:16
Alignment explanation
Indices: 32821039--32821080 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
32821029 TATCATCGGT
32821039 ACAAAGCCTGCTAGGA
1 ACAAAGCCTGCTAGGA
* *
32821055 ACAAAGCCTACTAGGC
1 ACAAAGCCTGCTAGGA
*
32821071 ATAAAGCCTG
1 ACAAAGCCTG
32821081 AATAACGTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.14
Consensus pattern (16 bp):
ACAAAGCCTGCTAGGA
Found at i:32821062 original size:38 final size:38
Alignment explanation
Indices: 32820860--32821053 Score: 208
Period size: 38 Copynumber: 5.1 Consensus size: 38
32820850 TACACCGGAA
* * *
32820860 TAGGCATAGAGCCTGAATAACACCGGTACAAAGCCTGC
1 TAGGCATAGAGCCCGAATATCACCGGCACAAAGCCTGC
* * * *
32820898 TAAGCATAGAGCCCGAAAATCACTGGCACAAAGCCTAC
1 TAGGCATAGAGCCCGAATATCACCGGCACAAAGCCTGC
* *
32820936 TAGGCATAGAGCCCGAATATCATCGGCACAAAGCTTGC
1 TAGGCATAGAGCCCGAATATCACCGGCACAAAGCCTGC
* * * * * **
32820974 AAGGCACAGAGCCTGACTATCACCAGCACAAAGCCTAT
1 TAGGCATAGAGCCCGAATATCACCGGCACAAAGCCTGC
* * * *
32821012 TAGGTATAAAGCCCGAATATCATCGGTACAAAGCCTGC
1 TAGGCATAGAGCCCGAATATCACCGGCACAAAGCCTGC
32821050 TAGG
1 TAGG
32821054 AACAAAGCCT
Statistics
Matches: 123, Mismatches: 33, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
38 123 1.00
ACGTcount: A:0.35, C:0.27, G:0.22, T:0.16
Consensus pattern (38 bp):
TAGGCATAGAGCCCGAATATCACCGGCACAAAGCCTGC
Found at i:32821063 original size:76 final size:76
Alignment explanation
Indices: 32820860--32821067 Score: 247
Period size: 76 Copynumber: 2.8 Consensus size: 76
32820850 TACACCGGAA
* * * * * * ** **
32820860 TAGGCATAGAGCCTGAATAACACCGGTACAAAGCCTGCTAAGCATAGAGCCCGAAAATCACTGGC
1 TAGGCATAGAGCCCGAATATCATCGGTACAAAGCCTGCTAGGCACAGAGCCTGACTATCACCAGC
32820925 ACAAAGCCTAC
66 ACAAAGCCTAC
* * *
32820936 TAGGCATAGAGCCCGAATATCATCGGCACAAAGCTTGCAAGGCACAGAGCCTGACTATCACCAGC
1 TAGGCATAGAGCCCGAATATCATCGGTACAAAGCCTGCTAGGCACAGAGCCTGACTATCACCAGC
*
32821001 ACAAAGCCTAT
66 ACAAAGCCTAC
* * * *
32821012 TAGGTATAAAGCCCGAATATCATCGGTACAAAGCCTGCTAGGAACAAAGCCT-ACTA
1 TAGGCATAGAGCCCGAATATCATCGGTACAAAGCCTGCTAGGCACAGAGCCTGACTA
32821068 GGCATAAAGC
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
75 4 0.04
76 107 0.96
ACGTcount: A:0.36, C:0.27, G:0.21, T:0.16
Consensus pattern (76 bp):
TAGGCATAGAGCCCGAATATCATCGGTACAAAGCCTGCTAGGCACAGAGCCTGACTATCACCAGC
ACAAAGCCTAC
Found at i:32823691 original size:42 final size:43
Alignment explanation
Indices: 32823507--32823690 Score: 219
Period size: 43 Copynumber: 4.3 Consensus size: 43
32823497 CCACAAAATA
* *
32823507 TCATGACTTTTAGC-GACGTTTGTGGGAAAAACGCCACTAAAAG
1 TCATGGCTTTTAGCAG-CGTTTGTGGGAAAAGCGCCACTAAAAG
* *
32823550 TCATGGGTTTTAGCAGCGTTTGTGGGAAAAGCGCCATTAAAAG
1 TCATGGCTTTTAGCAGCGTTTGTGGGAAAAGCGCCACTAAAAG
* * * *
32823593 TCATGGCCTTTAGCGGCGTTTGAGGGAAAAGCGCCGCTAAAAG
1 TCATGGCTTTTAGCAGCGTTTGTGGGAAAAGCGCCACTAAAAG
* * * * *
32823636 TCATGGCCTTTAGTAGC-TTTGTGGTAAAAGCACCGCTAAAAG
1 TCATGGCTTTTAGCAGCGTTTGTGGGAAAAGCGCCACTAAAAG
*
32823678 TCATGACTTTTAG
1 TCATGGCTTTTAG
32823691 TGGCGCTTTT
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 33 0.27
43 89 0.72
44 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (43 bp):
TCATGGCTTTTAGCAGCGTTTGTGGGAAAAGCGCCACTAAAAG
Found at i:32823717 original size:85 final size:86
Alignment explanation
Indices: 32823490--32823695 Score: 236
Period size: 86 Copynumber: 2.4 Consensus size: 86
32823480 TTTATTTGAA
* * * * * * *
32823490 AAAAACACCAC-AAAATATCATGACTTTTAGCGACGTTTGTGGGAAAAACGCCACTAAAAGTCAT
1 AAAAGCACCACTAAAA-GTCATGACCTTTAGCGGCGTTTGAGGGAAAAGCGCCGCTAAAAGTCAT
**
32823554 GGGTTTTAGCAGCGTTTGTGGG
65 GGCCTTTAGCAGCGTTTGTGGG
* * *
32823576 AAAAGCGCCATTAAAAGTCATGGCCTTTAGCGGCGTTTGAGGGAAAAGCGCCGCTAAAAGTCATG
1 AAAAGCACCACTAAAAGTCATGACCTTTAGCGGCGTTTGAGGGAAAAGCGCCGCTAAAAGTCATG
* *
32823641 GCCTTTAGTAGC-TTTGTGGT
66 GCCTTTAGCAGCGTTTGTGGG
* * *
32823661 AAAAGCACCGCTAAAAGTCATGACTTTTAGTGGCG
1 AAAAGCACCACTAAAAGTCATGACCTTTAGCGGCG
32823696 CTTTTGTTAC
Statistics
Matches: 99, Mismatches: 20, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
85 36 0.36
86 59 0.60
87 4 0.04
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (86 bp):
AAAAGCACCACTAAAAGTCATGACCTTTAGCGGCGTTTGAGGGAAAAGCGCCGCTAAAAGTCATG
GCCTTTAGCAGCGTTTGTGGG
Found at i:32823802 original size:31 final size:31
Alignment explanation
Indices: 32823767--32823832 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
32823757 AACCCTTCCT
*
32823767 GCATTAAATCCAACCAAAAACAGTAAATATA
1 GCATTAAATCCAACCAAAAACAGCAAATATA
* * *
32823798 GCATTGAATCCAACCAAATACAGCAAATGTA
1 GCATTAAATCCAACCAAAAACAGCAAATATA
32823829 GCAT
1 GCAT
32823833 AAAAAATACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.21, G:0.11, T:0.20
Consensus pattern (31 bp):
GCATTAAATCCAACCAAAAACAGCAAATATA
Found at i:32824111 original size:21 final size:21
Alignment explanation
Indices: 32824082--32824131 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
32824072 TGCTCTGCTA
* *
32824082 CCATTGCTGCTGCCTCTGCCT
1 CCATCGCTGCTGCCACTGCCT
*
32824103 CCCTCGCTGCTGCCACTGCCT
1 CCATCGCTGCTGCCACTGCCT
32824124 CCATCGCT
1 CCATCGCT
32824132 ATTGCATCCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.06, C:0.48, G:0.18, T:0.28
Consensus pattern (21 bp):
CCATCGCTGCTGCCACTGCCT
Done.