Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 105 of 349
Found at i:32824575 original size:13 final size:14
Alignment explanation
Indices: 32824549--32824577 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32824539 ACTAACGACG
32824549 AATTAAACCATTAT
1 AATTAAACCATTAT
32824563 AATTAAA-CATTAT
1 AATTAAACCATTAT
32824576 AA
1 AA
32824578 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:32829374 original size:9 final size:9
Alignment explanation
Indices: 32829360--32829512 Score: 95
Period size: 9 Copynumber: 17.0 Consensus size: 9
32829350 TAAGTATAAT
32829360 TAAGTTATG
1 TAAGTTATG
32829369 TAAGTTATG
1 TAAGTTATG
* * *
32829378 ATATGATATA
1 -TAAGTTATG
*
32829388 T-ATTTATG
1 TAAGTTATG
32829396 T-A-TTATG
1 TAAGTTATG
32829403 TAAGTTATG
1 TAAGTTATG
*
32829412 TAAATTATG
1 TAAGTTATG
32829421 TAAGTTAT-
1 TAAGTTATG
32829429 TCGAA-TTATG
1 T--AAGTTATG
*
32829439 TAAATTATG
1 TAAGTTATG
*
32829448 TAAGATATGATA
1 TAAG-T-T-ATG
*
32829460 TATATTTATG
1 TA-AGTTATG
32829470 T-A-TTATG
1 TAAGTTATG
32829477 TAAGTTATG
1 TAAGTTATG
*
32829486 TAAATTATG
1 TAAGTTATG
*
32829495 TAAATTATG
1 TAAGTTATG
*
32829504 TAAGATATG
1 TAAGTTATG
32829513 ATATATATTT
Statistics
Matches: 115, Mismatches: 16, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
7 12 0.10
8 11 0.10
9 71 0.62
10 13 0.11
11 2 0.02
12 5 0.04
13 1 0.01
ACGTcount: A:0.38, C:0.01, G:0.16, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:32829420 original size:18 final size:18
Alignment explanation
Indices: 32829397--32829506 Score: 109
Period size: 18 Copynumber: 6.0 Consensus size: 18
32829387 ATATTTATGT
32829397 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
*
32829415 ATTATGTAAGTTAT-TCGA
1 ATTATGTAAGTTATGT-AA
*
32829433 ATTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* *
32829451 GATATGATATATATTTATGT--
1 -AT-T-ATGTA-AGTTATGTAA
32829471 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
*
32829489 ATTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
32829507 GATATGATAT
Statistics
Matches: 76, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
16 7 0.09
17 5 0.07
18 47 0.62
19 5 0.07
20 1 0.01
21 4 0.05
22 7 0.09
ACGTcount: A:0.39, C:0.01, G:0.15, T:0.45
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:32829483 original size:56 final size:56
Alignment explanation
Indices: 32829415--32829526 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
32829405 AGTTATGTAA
*
32829415 ATTATGTAAGTTAT-TCGAATTATGTAAATTATGTAAGATATGATATATATTTATGT
1 ATTATGTAAGTTATGT-AAATTATGTAAATTATGTAAGATATGATATATATTTATGT
32829471 ATTATGTAAGTTATGTAAATTATGTAAATTATGTAAGATATGATATATATTTATGT
1 ATTATGTAAGTTATGTAAATTATGTAAATTATGTAAGATATGATATATATTTATGT
32829527 TGATGGGATT
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
56 53 0.98
57 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.46
Consensus pattern (56 bp):
ATTATGTAAGTTATGTAAATTATGTAAATTATGTAAGATATGATATATATTTATGT
Found at i:32829956 original size:5 final size:5
Alignment explanation
Indices: 32829946--32829972 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
32829936 TTTTCGTGAT
32829946 TAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TA
32829973 TTTAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:32830294 original size:5 final size:5
Alignment explanation
Indices: 32830256--32830282 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
32830246 TTTTCGTGAT
32830256 TAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TA
32830283 TTTAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:32830592 original size:10 final size:10
Alignment explanation
Indices: 32830577--32830602 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
32830567 TTTTGTGATT
32830577 AAAATAAAAG
1 AAAATAAAAG
32830587 AAAATAAAAG
1 AAAATAAAAG
32830597 AAAATA
1 AAAATA
32830603 TTTAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.12
Consensus pattern (10 bp):
AAAATAAAAG
Found at i:32830682 original size:110 final size:105
Alignment explanation
Indices: 32829775--32830660 Score: 1291
Period size: 105 Copynumber: 8.4 Consensus size: 105
32829765 CAATATTTAA
* *
32829775 AAATACAATTTAATTTAATTAGGTAATTTAAAAAATAAAATAAAAGTAG--ATAATATTTTTTGT
1 AAATACAATTTAATTTAATTAGGTAATTT-AAAAATAAAATAAAAGTAGACAAAATATTTTTCGT
*
32829838 GATTAAAATAAAATAAAATAAAATATTTAAAATAAAACTTT
65 GATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* * *
32829879 AAATACAATTTACTATAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATGTTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
*
32829944 ATTAAAATAAAATAAAATAAAATAAAATATTTAAAATAATA-TTT
66 ATT-AAAT----TAAAATAAAATAAAATATTTAAAATAAAACTTT
*
32829988 AAAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGAC--AATATTTTTCA
1 --AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCG
32830051 TGATTAAA-T----TAAAATAAAATATTTAAAATAAAACTTT
64 TGATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* *
32830088 AAATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAGGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
* * *
32830153 ATTAAATCAAAAT-AATTAAAATATTTAAAATAAAACTCT
66 ATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
*
32830192 AAATAAAATTTAATTTAATTAGGTAATTTAAAAAT--AA-AAAAGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
*
32830254 ATTAAAATAAAATAAAATAAAATAAAATATTTAAAATAAAACTAT
66 ATT-AAAT----TAAAATAAAATAAAATATTTAAAATAAAACTTT
*
32830299 AAATACAAGTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
32830364 ATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
66 ATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
32830404 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
*
32830469 ATTAAATTAAATTAAAATAAAATATTTAAAATAAAACTTT
66 ATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
* * *
32830509 AAATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAAGTACACAAAATATTTTTTGTG
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
* *
32830574 ATTAAAATAAAAGAAAATAAAAGAAAATATTTAAAATAAAACTTT
66 ATT-AAAT----TAAAATAAAATAAAATATTTAAAATAAAACTTT
*
32830619 AAATAAAATTTAATTTAATTAGGTAA-TT-AAAATAAAATAAAA
1 AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
32830661 CTTTAGCGGC
Statistics
Matches: 714, Mismatches: 37, Indels: 58
0.88 0.05 0.07
Matches are distributed among these distances:
98 48 0.07
99 23 0.03
100 21 0.03
101 27 0.04
102 6 0.01
103 20 0.03
104 84 0.12
105 216 0.30
106 12 0.02
107 57 0.08
108 17 0.02
109 25 0.04
110 110 0.15
111 48 0.07
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (105 bp):
AAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG
ATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTT
Found at i:32833458 original size:15 final size:15
Alignment explanation
Indices: 32833435--32833466 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32833425 AAATAATAAT
32833435 TTATATATATTTATC
1 TTATATATATTTATC
*
32833450 TTATTTATATTTATC
1 TTATATATATTTATC
32833465 TT
1 TT
32833467 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:32837763 original size:16 final size:16
Alignment explanation
Indices: 32837742--32837773 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32837732 TGAATTTATG
32837742 ATAAAACATAAGTAAA
1 ATAAAACATAAGTAAA
32837758 ATAAAACATAAGTAAA
1 ATAAAACATAAGTAAA
32837774 CTATGCTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (16 bp):
ATAAAACATAAGTAAA
Found at i:32839075 original size:27 final size:27
Alignment explanation
Indices: 32839055--32839594 Score: 590
Period size: 27 Copynumber: 20.2 Consensus size: 27
32839045 AAATTACTAT
32839055 AATACCCTCGATTTGTAAAATTACCGA
1 AATACCCTCGATTTGTAAAATTACCGA
*
32839082 AATA-CCTCTGATTTGTAAAATTACTGA
1 AATACCCTC-GATTTGTAAAATTACCGA
* * * *
32839109 AATACCATTGA-TTGTGAAATTACTGA
1 AATACCCTCGATTTGTAAAATTACCGA
*
32839135 AATACCCTCGATTTGTAAAATTACCAA
1 AATACCCTCGATTTGTAAAATTACCGA
*
32839162 AATACCCTCGA-TTGTAAAATTACCAA
1 AATACCCTCGATTTGTAAAATTACCGA
* *
32839188 AATACCATTGATTTGTAAAATTACCGA
1 AATACCCTCGATTTGTAAAATTACCGA
* * *
32839215 AATACCCCCAATTTGTAAAATTACCTA
1 AATACCCTCGATTTGTAAAATTACCGA
* *
32839242 AACACCCTCTATTTGTAAAATTACCGA
1 AATACCCTCGATTTGTAAAATTACCGA
* *
32839269 AATACCCTTGATTTGTAAAATAACCGA
1 AATACCCTCGATTTGTAAAATTACCGA
* *
32839296 AATACCCTC-ATTTGTGAAATTATCGA
1 AATACCCTCGATTTGTAAAATTACCGA
* *
32839322 AATACCCTCAATTTGTAAAATTACTGA
1 AATACCCTCGATTTGTAAAATTACCGA
* *
32839349 AATACCCTCGA-TTGTGAAATTACCAA
1 AATACCCTCGATTTGTAAAATTACCGA
* *
32839375 AATACCC-CTATTTGTGAAATTACCGA
1 AATACCCTCGATTTGTAAAATTACCGA
* * *
32839401 AACACCTTCGATTTGTAAAATTACTGA
1 AATACCCTCGATTTGTAAAATTACCGA
* * * *
32839428 AACACCTTTGATTTTTAAAATTACCGA
1 AATACCCTCGATTTGTAAAATTACCGA
* * **
32839455 AACATCCTTAATTTGTAAAATTACCGA
1 AATACCCTCGATTTGTAAAATTACCGA
** * *
32839482 AATACCCTTAATTTATAAAATTACCAA
1 AATACCCTCGATTTGTAAAATTACCGA
*
32839509 AATACCCTTGATTTGTAAAATTACCGA
1 AATACCCTCGATTTGTAAAATTACCGA
* ** *
32839536 AACACCCTAAATTTGTAAAATTATCGA
1 AATACCCTCGATTTGTAAAATTACCGA
* * *
32839563 AATACCCTTG-TAGTGTAAATTTACCGA
1 AATACCCTCGAT-TTGTAAAATTACCGA
32839590 AATAC
1 AATAC
32839595 TCTTGTAGTA
Statistics
Matches: 438, Mismatches: 67, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
25 2 0.00
26 113 0.26
27 321 0.73
28 2 0.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AATACCCTCGATTTGTAAAATTACCGA
Found at i:32853417 original size:50 final size:50
Alignment explanation
Indices: 32853342--32853442 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
32853332 CCATGGTAAC
* *
32853342 AAGTGATAAGTGATAGCTTGGGCTACACTTATCTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
*
32853392 AAGTGATAATTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
32853442 A
1 A
32853443 CACTTATCTG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
Found at i:32853445 original size:26 final size:26
Alignment explanation
Indices: 32853416--32853468 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32853406 AGCTTCGGCT
*
32853416 ACACTTATCTGATCAAGGACAAGTGA
1 ACACTTATCTGATCAAGGACAAATGA
32853442 ACACTTATCTGATCAAGGACAAATGA
1 ACACTTATCTGATCAAGGACAAATGA
32853468 A
1 A
32853469 AGTGATAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.23
Consensus pattern (26 bp):
ACACTTATCTGATCAAGGACAAATGA
Found at i:32853510 original size:31 final size:31
Alignment explanation
Indices: 32853469--32853555 Score: 111
Period size: 31 Copynumber: 2.8 Consensus size: 31
32853459 GACAAATGAA
* * *
32853469 AGTGATAAGTGATAGCTTTGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
*
32853500 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
* * *
32853531 AGTGAATAGTGGTAGCATCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGACTAC
32853556 AAGTGACAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGACTACCTGATC
Found at i:32856062 original size:43 final size:43
Alignment explanation
Indices: 32855921--32856093 Score: 183
Period size: 43 Copynumber: 4.0 Consensus size: 43
32855911 GACATAGGAT
* * * *
32855921 TCGATATGTGTTTTCGTGTAAGACCATGTCTAGGATGTTGGCA
1 TCGATATATGATTTCGTGTAAGACCACGTCTAGGACGTTGGCA
*
32855964 TCGACT-TATGATTTACGTGTAAGACCACATCTAGGACGTTGGCA
1 TCGA-TATATGATTT-CGTGTAAGACCACGTCTAGGACGTTGGCA
*
32856008 TC-ATATATGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATATGATTTCGTGTAAGACCAC-GTCTAGGAC-GTTGGCA
* * * * *
32856050 TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTAGCA
1 TCGATATATGATTTCGTGTAAGACCACGTCTAGGACGTTGGCA
32856093 T
1 T
32856094 TGTACGAGAT
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.24
43 53 0.48
44 30 0.27
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGATATATGATTTCGTGTAAGACCACGTCTAGGACGTTGGCA
Found at i:32857610 original size:43 final size:43
Alignment explanation
Indices: 32857549--32857634 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
32857539 TAATTTGATG
32857549 TTGTTACCATTTGATGAGTTTGACATAATCCTGGGTATGGATT
1 TTGTTACCATTTGATGAGTTTGACATAATCCTGGGTATGGATT
32857592 TTGTTACCATTTGATGAGTTTGACATAATCCTGGGTATGGATT
1 TTGTTACCATTTGATGAGTTTGACATAATCCTGGGTATGGATT
32857635 GGCTAACATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (43 bp):
TTGTTACCATTTGATGAGTTTGACATAATCCTGGGTATGGATT
Found at i:32867119 original size:48 final size:48
Alignment explanation
Indices: 32867067--32867162 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
32867057 GAGAATAAGT
* * *
32867067 ATGAAATTATTATGAGATGGTGCAGGTATGTACATAAGTTTATGATTA
1 ATGAAATTATTACGAGATGGTACAGGTATGTACATAAGCTTATGATTA
32867115 ATGAAATTATTACGAGATGGTACAGGTATGTACATAAGCTTATGATTA
1 ATGAAATTATTACGAGATGGTACAGGTATGTACATAAGCTTATGATTA
32867163 TTAAATTTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.35
Consensus pattern (48 bp):
ATGAAATTATTACGAGATGGTACAGGTATGTACATAAGCTTATGATTA
Found at i:32871109 original size:33 final size:33
Alignment explanation
Indices: 32871041--32871112 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
32871031 TCAGTGGCAA
* *
32871041 TATCAGTATGGGCCTTAGCCCATTACGGAATAG
1 TATCAGTATGGGCCTTAGCCCATTACAGAACAG
* *
32871074 TATCAGTGTGGGCCTTAGCCCAATT-CAGTACAG
1 TATCAGTATGGGCCTTAGCCC-ATTACAGAACAG
32871107 TATCAG
1 TATCAG
32871113 AGATGCAAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 31 0.91
34 3 0.09
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (33 bp):
TATCAGTATGGGCCTTAGCCCATTACAGAACAG
Found at i:32871736 original size:19 final size:19
Alignment explanation
Indices: 32871714--32871756 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
32871704 GTTGGGCCTT
32871714 GCCCAATT-AACACAGTTGG
1 GCCCAATTCAACACAGTT-G
* *
32871733 GCCCATTTCAATACAGTTG
1 GCCCAATTCAACACAGTTG
32871752 GCCCA
1 GCCCA
32871757 TAACAAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (19 bp):
GCCCAATTCAACACAGTTG
Found at i:32871767 original size:19 final size:20
Alignment explanation
Indices: 32871725--32871768 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
32871715 CCCAATTAAC
** *
32871725 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
32871745 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
32871764 ACAGT
1 ACAGT
32871769 CTTATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:32873030 original size:16 final size:18
Alignment explanation
Indices: 32872991--32873032 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
32872981 GGAAATCAAG
*
32872991 GAAGGAAGAGATGAGAAA
1 GAAGAAAGAGATGAGAAA
32873009 -AAGAAAGAGA-GA-AAA
1 GAAGAAAGAGATGAGAAA
32873024 GAAGAAAGA
1 GAAGAAAGA
32873033 ATTCGGCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 3 0.14
16 10 0.45
17 9 0.41
ACGTcount: A:0.64, C:0.00, G:0.33, T:0.02
Consensus pattern (18 bp):
GAAGAAAGAGATGAGAAA
Found at i:32888049 original size:15 final size:14
Alignment explanation
Indices: 32888016--32888154 Score: 122
Period size: 15 Copynumber: 9.4 Consensus size: 14
32888006 ATAATATCAT
*
32888016 TATAATTTA-ATTA
1 TATAAATTATATTA
32888029 TCATAAATTCATATTA
1 T-ATAAATT-ATATTA
32888045 TATAAATTATATATA
1 TATAAATTATAT-TA
*
32888060 TCATTAATTATATTTA
1 T-ATAAATTATA-TTA
32888076 TATAAATTATATT-
1 TATAAATTATATTA
32888089 TATAAATTATATTTA
1 TATAAATTATA-TTA
*
32888104 TATTTATATTCATATTA
1 TA--TAAATT-ATATTA
32888121 TATAAATTATATTTA
1 TATAAATTATA-TTA
*
32888136 TATATCATTA-ATTA
1 TATA-AATTATATTA
32888150 TATAA
1 TATAA
32888155 TTTAAAACAA
Statistics
Matches: 106, Mismatches: 7, Indels: 26
0.76 0.05 0.19
Matches are distributed among these distances:
13 12 0.11
14 24 0.23
15 35 0.33
16 21 0.20
17 11 0.10
18 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
TATAAATTATATTA
Found at i:32888078 original size:6 final size:6
Alignment explanation
Indices: 32888067--32888138 Score: 63
Period size: 6 Copynumber: 11.0 Consensus size: 6
32888057 ATATCATTAA
* *
32888067 TTATAT TTATAT AAATTATAT TTATAAA TTATAT TTATAT TTATAT TCATAT
1 TTATAT TTATAT ---TTATAT TTAT-AT TTATAT TTATAT TTATAT TTATAT
*
32888119 TATATAAA TTATAT TTATAT
1 T-TAT-AT TTATAT TTATAT
32888139 ATCATTAATT
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
6 36 0.67
7 10 0.19
8 2 0.04
9 6 0.11
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (6 bp):
TTATAT
Found at i:32888085 original size:40 final size:40
Alignment explanation
Indices: 32888041--32888152 Score: 103
Period size: 44 Copynumber: 2.8 Consensus size: 40
32888031 ATAAATTCAT
32888041 ATTATATAAATTATATATATCATTAATTATATTTATATAA
1 ATTATATAAATTATATATATCATTAATTATATTTATATAA
*
32888081 ATTATATTTATAAATTATATTTAT-ATTTATATTCATA-TTATATAA
1 A-T-TA--TATAAATTATATATATCA-TTA-ATT-ATATTTATATAA
32888126 A-T-TAT--ATT-TATATATCATTAATTATAT
1 ATTATATAAATTATATATATCATTAATTATAT
32888153 AATTTAAAAC
Statistics
Matches: 61, Mismatches: 2, Indels: 23
0.71 0.02 0.27
Matches are distributed among these distances:
34 3 0.05
35 3 0.05
36 9 0.15
37 4 0.07
39 3 0.05
40 1 0.02
41 1 0.02
42 3 0.05
43 1 0.02
44 18 0.30
45 12 0.20
46 3 0.05
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (40 bp):
ATTATATAAATTATATATATCATTAATTATATTTATATAA
Found at i:32890447 original size:46 final size:46
Alignment explanation
Indices: 32890298--32890521 Score: 220
Period size: 46 Copynumber: 4.8 Consensus size: 46
32890288 ATTTGTTTGT
* * * * *
32890298 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* * * * *
32890344 GGGCCAGTGTAAGACCATGTCTAGGACATTGCATTGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCCTCGAGACGA
*
32890392 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
* * *
32890439 -AGCCAGTGTAAGACATGTTTGGGACATGCATCGG-CTACTAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGA
* *
32890484 TAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
32890522 ACTTTACCCA
Statistics
Matches: 147, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
45 3 0.02
46 76 0.52
47 38 0.26
48 29 0.20
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:32891510 original size:28 final size:29
Alignment explanation
Indices: 32891470--32891525 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
32891460 ACACGGGCTA
* *
32891470 GGACACGGGCGTGT-CGTGGCCGTGTGAG
1 GGACACGGGCGTGTGCCTGGCCATGTGAG
32891498 GGACACGGGCGTGTGCCTGGCCATGTGA
1 GGACACGGGCGTGTGCCTGGCCATGTGA
32891526 AAACCCTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 14 0.56
29 11 0.44
ACGTcount: A:0.12, C:0.23, G:0.46, T:0.18
Consensus pattern (29 bp):
GGACACGGGCGTGTGCCTGGCCATGTGAG
Found at i:32893349 original size:20 final size:22
Alignment explanation
Indices: 32893301--32893350 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
32893291 CTATTTTACC
* *
32893301 TATTTTTTAACCATTAAAACACT
1 TATTTTATAACCA-TAAAACACA
32893324 TATTTTATAACC-TAAAAC-CA
1 TATTTTATAACCATAAAACACA
32893344 TATTTTA
1 TATTTTA
32893351 CCTTTAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.32
21 6 0.24
23 11 0.44
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (22 bp):
TATTTTATAACCATAAAACACA
Found at i:32897736 original size:40 final size:40
Alignment explanation
Indices: 32897638--32897900 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
32897628 TCCTCGTTCA
* * * * *
32897638 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32897677 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32897717 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32897757 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32897797 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
32897837 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
32897877 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32897901 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32905691 original size:40 final size:40
Alignment explanation
Indices: 32905593--32905855 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
32905583 TCCTCGTTCA
* * * * *
32905593 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32905632 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
32905672 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32905712 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32905752 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
32905792 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
32905832 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32905856 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32907716 original size:47 final size:47
Alignment explanation
Indices: 32907638--32908148 Score: 770
Period size: 47 Copynumber: 10.7 Consensus size: 47
32907628 CCCTTCGGGA
* * * * * *
32907638 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32907685 CCTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32907732 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32907779 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32907826 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32907875 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32907922 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32907971 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32908018 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32908067 CTTATCACATATATACACTTTCGCATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32908114 CTTATCACATATATGCACATTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
32908149 AAAATCCTAA
Statistics
Matches: 428, Mismatches: 30, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
47 294 0.69
49 134 0.31
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32907717 original size:25 final size:25
Alignment explanation
Indices: 32907689--32907766 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
32907679 CTCGGCCCTG
32907689 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
*** *** *
32907714 TCACAT-TGGCCA-TTAGGCCTT-A
1 TCACATATATACACTTTCACATTCA
32907736 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
32907761 TCACAT
1 TCACAT
32907767 CGGCTATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:32907876 original size:96 final size:96
Alignment explanation
Indices: 32907638--32908148 Score: 845
Period size: 96 Copynumber: 5.4 Consensus size: 96
32907628 CCCTTCGGGA
* * * * *
32907638 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
32907701 ACTTTCACATTCATCACATTGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32907732 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
32907795 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
32907826 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
32907891 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
32907922 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
32907987 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
32908018 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * *
32908083 ACTTTCGCATTCATCACATCAGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
32908114 CTTATCAC--ATATATGCACATTCACATTCATCACAT
1 CTTATCACATATATATACACTTTCACATTCATCACAT
32908149 AAAATCCTAA
Statistics
Matches: 394, Mismatches: 19, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
93 1 0.00
94 114 0.29
96 279 0.71
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32907894 original size:143 final size:141
Alignment explanation
Indices: 32907638--32908148 Score: 779
Period size: 143 Copynumber: 3.6 Consensus size: 141
32907628 CCCTTCGGGA
* * * * * * * *
32907638 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32907703 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
32907768 GGCTATTAGGC
131 GGCCATTAGGC
*
32907779 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
32907844 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
32907909 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* *
32907922 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
32907987 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
32908052 CATTGGCCATTCGGC
127 CATCGGCCATTAGGC
* * * *
32908067 CTTATCACATATATACACTTTCGCATTCATCACATCAGCTATTAGGCCTTATCACATATATGCAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
32908132 ATTCACATTCATCACAT
66 TTTCACATTCATCACAT
32908149 AAAATCCTAA
Statistics
Matches: 339, Mismatches: 25, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
141 46 0.14
143 204 0.60
145 89 0.26
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:32908098 original size:25 final size:25
Alignment explanation
Indices: 32908028--32908101 Score: 66
Period size: 25 Copynumber: 3.1 Consensus size: 25
32908018 CTTATCACAT
*
32908028 ATATATACACTTTCACATTCATCAC
1 ATATATACACTTTCGCATTCATCAC
** * *
32908053 AT-T-GGC-CATTCGGCCTT-ATCAC
1 ATATATACACTTTC-GCATTCATCAC
32908075 ATATATACACTTTCGCATTCATCAC
1 ATATATACACTTTCGCATTCATCAC
32908100 AT
1 AT
32908102 CAGCTATTAG
Statistics
Matches: 35, Mismatches: 9, Indels: 10
0.65 0.17 0.19
Matches are distributed among these distances:
22 11 0.31
23 5 0.14
24 6 0.17
25 13 0.37
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (25 bp):
ATATATACACTTTCGCATTCATCAC
Found at i:32910130 original size:13 final size:13
Alignment explanation
Indices: 32910112--32910136 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32910102 TACTAAATTT
32910112 TCATGGATTCAAA
1 TCATGGATTCAAA
32910125 TCATGGATTCAA
1 TCATGGATTCAA
32910137 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:32931267 original size:13 final size:13
Alignment explanation
Indices: 32931249--32931275 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32931239 GCTCGGCAGG
32931249 GACACGCCCGTGT
1 GACACGCCCGTGT
32931262 GACACGCCCGTGT
1 GACACGCCCGTGT
32931275 G
1 G
32931276 CGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:32933444 original size:20 final size:20
Alignment explanation
Indices: 32933419--32933458 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
32933409 TTCCCACACT
*
32933419 TGTGTATACCGGTACACGCC
1 TGTGTATACAGGTACACGCC
32933439 TGTGTATACAGGTACACGCC
1 TGTGTATACAGGTACACGCC
32933459 CTTGTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (20 bp):
TGTGTATACAGGTACACGCC
Found at i:32941624 original size:34 final size:34
Alignment explanation
Indices: 32941586--32941671 Score: 95
Period size: 34 Copynumber: 2.5 Consensus size: 34
32941576 TTAGCCCCTT
32941586 TTTCAGTAACAGTAGCAAACTGGGCCTCAGCCCA
1 TTTCAGTAACAGTAGCAAACTGGGCCTCAGCCCA
* * ** *
32941620 TTTCAATAACAAT-GACAGTCTGGGCCTTAGCCCA
1 TTTCAGTAACAGTAG-CAAACTGGGCCTCAGCCCA
32941654 TTTCAGT-ACAGTATGCAA
1 TTTCAGTAACAGTA-GCAA
32941672 GCAAAGAGTC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
33 5 0.12
34 35 0.85
35 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (34 bp):
TTTCAGTAACAGTAGCAAACTGGGCCTCAGCCCA
Found at i:32952657 original size:42 final size:43
Alignment explanation
Indices: 32952611--32952691 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
32952601 CTAGAACATC
* * * **
32952611 GGCATC-ATATTTGATTTCGTGTAAGACCTTGTCTGGGACAGT
1 GGCATCGATAATTGATTACATGTAAGACCACGTCTGGGACAGT
32952653 GGCATCGATAATTGATTACATGTAAGACCACGTCTGGGA
1 GGCATCGATAATTGATTACATGTAAGACCACGTCTGGGA
32952692 TGTTGGCATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 6 0.18
43 27 0.82
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
GGCATCGATAATTGATTACATGTAAGACCACGTCTGGGACAGT
Found at i:32954752 original size:40 final size:41
Alignment explanation
Indices: 32954340--32954752 Score: 616
Period size: 40 Copynumber: 10.4 Consensus size: 41
32954330 AACCCAAGTA
* *
32954340 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
32954379 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
32954419 CCTTCGGGAT-TTAGCCCGGATATAGTAACTAGCACAAATA
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
* *
32954459 CCTTC-GGATCTTAGTCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
32954499 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
32954539 CCTTCGAGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
32954579 CCGTC-GGATCTTAGTCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
32954619 CCTTCGGGA-CTTAGCCCGAATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
32954659 CCTTC-GGATCTTAGTCCGGTTATAGTAACTAGCACAAAAG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
32954699 CCTTCGGGA-CTTAGCCTGGATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
32954739 CCTTC-GGATCTTAG
1 CCTTCGGGATCTTAG
32954753 TCTGGTTATC
Statistics
Matches: 339, Mismatches: 25, Indels: 19
0.89 0.07 0.05
Matches are distributed among these distances:
39 25 0.07
40 305 0.90
41 9 0.03
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (41 bp):
CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:32956179 original size:13 final size:13
Alignment explanation
Indices: 32956163--32956190 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32956153 TTTATTATTT
32956163 TTAACACAAAATA
1 TTAACACAAAATA
32956176 TTAACACAAAATA
1 TTAACACAAAATA
32956189 TT
1 TT
32956191 TATACTATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:32961555 original size:40 final size:40
Alignment explanation
Indices: 32961183--32961546 Score: 540
Period size: 40 Copynumber: 9.1 Consensus size: 40
32961173 AACCCAAGTA
* * * *
32961183 CCTTCGGGATTTAG-CTGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
32961222 CCTTCGGGACTTAGCCCGGATATATTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
32961262 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
32961302 CCTTC-GGATCTTAGTCC-GATTATAGTAACTAGCACAAATG
1 CCTTCGGGA-CTTAGCCCGGA-TATAGTAACTAGCACAAATG
32961342 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
32961382 CCTTC-GGATCTTAGTCCGGTTATAGTAACTAGCACAAATA
1 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
* *
32961422 ACTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
32961462 CCTTC-GGATCTTAGTCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
32961502 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
32961542 CCTTC
1 CCTTC
32961547 AGATCTTAGT
Statistics
Matches: 294, Mismatches: 22, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
39 24 0.08
40 259 0.88
41 11 0.04
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:32961563 original size:80 final size:80
Alignment explanation
Indices: 32961183--32961564 Score: 624
Period size: 80 Copynumber: 4.8 Consensus size: 80
32961173 AACCCAAGTA
* * * * * *
32961183 CCTTCGGGATTTAG-CTGGATATAGCAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTC-GGATCTTAGTCCGGTTATA
*
32961246 TTAACTAGCACAAATG
65 GTAACTAGCACAAATG
*
32961262 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGATTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGTTATAG
32961327 TAACTAGCACAAATG
66 TAACTAGCACAAATG
32961342 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGTTATAG
*
32961407 TAACTAGCACAAATA
66 TAACTAGCACAAATG
* *
32961422 ACTTCGGGACTTAGCCCGAATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGTTATAG
32961487 TAACTAGCACAAATG
66 TAACTAGCACAAATG
* *
32961502 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCAGATCTTAGTCTGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGTTAT
32961565 CATCCGAATA
Statistics
Matches: 284, Mismatches: 17, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
79 16 0.06
80 268 0.94
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGTTATAG
TAACTAGCACAAATG
Found at i:32962978 original size:13 final size:13
Alignment explanation
Indices: 32962962--32962989 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32962952 TTTATTATTT
32962962 TTAACACAAAATA
1 TTAACACAAAATA
32962975 TTAACACAAAATA
1 TTAACACAAAATA
32962988 TT
1 TT
32962990 TATACTATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:32966745 original size:25 final size:25
Alignment explanation
Indices: 32966717--32966764 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
32966707 AACATACTTC
32966717 AAAATTCATGCGAAATACCTTACTA
1 AAAATTCATGCGAAATACCTTACTA
*
32966742 AAAATTCATGTGAAATACCTTAC
1 AAAATTCATGCGAAATACCTTAC
32966765 CCTCCCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (25 bp):
AAAATTCATGCGAAATACCTTACTA
Found at i:32968975 original size:6 final size:6
Alignment explanation
Indices: 32968943--32969000 Score: 59
Period size: 6 Copynumber: 10.0 Consensus size: 6
32968933 GGCCGGCTTT
* * *
32968943 ATTAAA A-T-AA A-TAAA ACTAAC ATTAAA ATTAAA AATAAA GATTAAA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA -ATTAAA
32968989 ATTAAA ATTAAA
1 ATTAAA ATTAAA
32969001 GACAGAGATA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
4 4 0.09
5 4 0.09
6 31 0.70
7 5 0.11
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (6 bp):
ATTAAA
Found at i:32968986 original size:19 final size:19
Alignment explanation
Indices: 32968964--32969002 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32968954 TAAAACTAAC
32968964 ATTAAAATTAAAAATAAAG
1 ATTAAAATTAAAAATAAAG
*
32968983 ATTAAAATTAAAATTAAAG
1 ATTAAAATTAAAAATAAAG
32969002 A
1 A
32969003 CAGAGATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (19 bp):
ATTAAAATTAAAAATAAAG
Found at i:32968996 original size:25 final size:25
Alignment explanation
Indices: 32968951--32969031 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
32968941 TTATTAAAAT
* *
32968951 AAATAAA-ACTAACATTAAAATTAA
1 AAATAAAGATTAAAATTAAAATTAA
32968975 AAATAAAGATTAAAATTAAAATTAA
1 AAATAAAGATTAAAATTAAAATTAA
* * * * *
32969000 AGACAGAGATAAAAATGAAAAATT-A
1 AAATAAAGATTAAAAT-TAAAATTAA
32969025 AAATAAA
1 AAATAAA
32969032 ACTAAGAAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
24 7 0.16
25 32 0.71
26 6 0.13
ACGTcount: A:0.68, C:0.04, G:0.06, T:0.22
Consensus pattern (25 bp):
AAATAAAGATTAAAATTAAAATTAA
Found at i:32969030 original size:19 final size:18
Alignment explanation
Indices: 32968951--32969032 Score: 60
Period size: 19 Copynumber: 4.4 Consensus size: 18
32968941 TTATTAAAAT
* *
32968951 AAATAAAACT-AACATTA
1 AAATAAAAATAAAGATTA
32968968 AAATTAAAAATAAAGATTA
1 AAA-TAAAAATAAAGATTA
* *
32968987 AAATTAAAATTAAAGA-CA
1 AAA-TAAAAATAAAGATTA
* *
32969005 GAGATAAAAATGAAAAATTA
1 -AAATAAAAAT-AAAGATTA
32969025 AAATAAAA
1 AAATAAAA
32969033 CTAAGAAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
17 3 0.06
18 13 0.25
19 34 0.67
20 1 0.02
ACGTcount: A:0.68, C:0.04, G:0.06, T:0.22
Consensus pattern (18 bp):
AAATAAAAATAAAGATTA
Found at i:32970377 original size:34 final size:33
Alignment explanation
Indices: 32970311--32970385 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 33
32970301 ATATCAGTCG
*
32970311 CAGTATTAGTGTGGGCCTTAGCCCAATACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCAATACAGT-A
* * *
32970345 TAGTATCAGTGTGGGCCTTAGCCCATTTCAGTA
1 CAGTATCAGTGTGGGCCTTAGCCCAATACAGTA
32970378 CAGTATCA
1 CAGTATCA
32970386 TAAATGCATA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 8 0.22
34 28 0.78
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (33 bp):
CAGTATCAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:32973462 original size:51 final size:51
Alignment explanation
Indices: 32973384--32973515 Score: 160
Period size: 51 Copynumber: 2.6 Consensus size: 51
32973374 ACAGATGCCC
* *
32973384 AGTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAA
1 AGTGGCCTGCACATAGTACCACACTTGTGA-CCAAAGCTACCTT-TTACACAA
* * * *
32973435 AGTGGCCTTCACATAGTACCACACTTGTGACCAAAGTTATCTTTTACACAT
1 AGTGGCCTGCACATAGTACCACACTTGTGACCAAAGCTACCTTTTACACAA
* *
32973486 AGTGGCCTGCACTTAGTACCACACATGTGA
1 AGTGGCCTGCACATAGTACCACACTTGTGA
32973516 TAGAAGCTAT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 2 0.03
51 67 0.96
52 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (51 bp):
AGTGGCCTGCACATAGTACCACACTTGTGACCAAAGCTACCTTTTACACAA
Found at i:32973656 original size:52 final size:50
Alignment explanation
Indices: 32973534--32973663 Score: 134
Period size: 52 Copynumber: 2.6 Consensus size: 50
32973524 ATCAGGTACG
* **
32973534 CATAGTAGCCTGCACATAGTACTACACATGCAACCTAACCATCTGGTACA
1 CATAGTAGCCTGCACATAGTACTACACACGCAACCTAACCATCTGAAACA
* * * * * ** * *
32973584 CGTAGTAGTCTGCGCTTAGTATTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACATAGTACTACACACGCAACCT--AACCATCTGAAACA
32973636 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACATAGTACTACACA
32973664 TGTGTTCTCA
Statistics
Matches: 61, Mismatches: 17, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
50 28 0.46
52 33 0.54
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACATAGTACTACACACGCAACCTAACCATCTGAAACA
Found at i:32976260 original size:23 final size:25
Alignment explanation
Indices: 32976232--32976279 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
32976222 CGGAGATATC
32976232 TAAAAAGCTC-TATGAG-TTCCTGAG
1 TAAAAA-CTCTTATGAGTTTCCTGAG
32976256 TAAAAACTCTTATGAGTTTCCTGA
1 TAAAAACTCTTATGAGTTTCCTGA
32976280 TTAGCTCGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 3 0.14
24 12 0.55
25 7 0.32
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (25 bp):
TAAAAACTCTTATGAGTTTCCTGAG
Found at i:32979664 original size:40 final size:40
Alignment explanation
Indices: 32979580--32979763 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
32979570 TTGAATGCTG
* * * *
32979580 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
32979619 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
32979660 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
32979700 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
32979740 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32979764 GAATGAGTTT
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:32979717 original size:80 final size:81
Alignment explanation
Indices: 32979580--32979760 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
32979570 TTGAATGCTG
* * *
32979580 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
32979644 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
32979660 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
32979721 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
32979740 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
32979761 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:32987512 original size:39 final size:40
Alignment explanation
Indices: 32987407--32987589 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
32987397 TTGAATGCTG
* * * *
32987407 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
32987446 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
32987487 TCC-GGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
32987526 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
32987566 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32987590 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.26
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:32987543 original size:79 final size:81
Alignment explanation
Indices: 32987407--32987586 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 81
32987397 TTGAATGCTG
* * *
32987407 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
32987471 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
32987487 TCC-GGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
32987547 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
32987566 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
32987587 ATTGAATGAG
Statistics
Matches: 87, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
78 4 0.05
79 54 0.62
80 29 0.33
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:32987602 original size:79 final size:79
Alignment explanation
Indices: 32987441--32987626 Score: 191
Period size: 79 Copynumber: 2.4 Consensus size: 79
32987431 GTGCTAAGTG
* * * * *
32987441 ACTATATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAATTCCGGTTAAGTCCCGAAG
1 ACTATAACCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGTTAAGTCCCGAAG
* **
32987505 GCCTTTGTGCGAGAT
65 GCCATTGAACGAGAT
* *
32987520 ACTA-ATTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCGA
1 ACTATA-ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATT-AAATCC-GGTTAAGTCCCGA
* *
32987583 AGG-CATTGAATGAGTT
63 AGGCCATTGAACGAGAT
*
32987599 ACTATAACCGGGCTATGTCCCGAAGGCA
1 ACTATAACCGGGCTAAGTCCCGAAGGCA
32987627 CTTGAACGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
78 4 0.04
79 68 0.76
80 17 0.19
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
ACTATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGTTAAGTCCCGAAGG
CCATTGAACGAGAT
Found at i:32987610 original size:39 final size:39
Alignment explanation
Indices: 32987490--32987636 Score: 127
Period size: 40 Copynumber: 3.7 Consensus size: 39
32987480 TATTAATTCC
* ** * *
32987490 GGTTAAGTCCCGAAGGCCTTTGTGCGAGATACT-AATTCCG
1 GGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAATCCG
** *
32987530 GGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAATCCG
1 GGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAATCCG
* *
32987570 GGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA-CCG
1 GGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAATCCG
* *
32987609 GGCTATGTCCCGAAGGCACTTGAACGAG
1 GGTTAAGTCCCGAAGGCA-TTGAACGAG
32987637 GAGCTAAATC
Statistics
Matches: 91, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 30 0.33
40 61 0.67
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
GGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAATCCG
Found at i:32994541 original size:16 final size:16
Alignment explanation
Indices: 32994520--32994550 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32994510 ACACTTCCGC
32994520 TTTTTCCTCTCTTTTT
1 TTTTTCCTCTCTTTTT
*
32994536 TTTTTCCTCTGTTTT
1 TTTTTCCTCTCTTTT
32994551 CGATGGCATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTTCCTCTCTTTTT
Found at i:33011365 original size:15 final size:15
Alignment explanation
Indices: 33011345--33011375 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33011335 CATCCTATCT
33011345 AATCTTTTCCGTGAC
1 AATCTTTTCCGTGAC
*
33011360 AATCTTTTTCGTGAC
1 AATCTTTTCCGTGAC
33011375 A
1 A
33011376 GATAATAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.42
Consensus pattern (15 bp):
AATCTTTTCCGTGAC
Found at i:33012786 original size:17 final size:18
Alignment explanation
Indices: 33012766--33012806 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
33012756 AAAATAATAT
33012766 TATTTTAAT-AAATTTAA
1 TATTTTAATCAAATTTAA
*
33012783 TA-TTTAATCTAATTTAA
1 TATTTTAATCAAATTTAA
33012800 TACTTTT
1 TA-TTTT
33012807 CTTAATAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 6 0.30
17 11 0.55
19 3 0.15
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTTTAATCAAATTTAA
Found at i:33012924 original size:12 final size:11
Alignment explanation
Indices: 33012892--33012950 Score: 56
Period size: 10 Copynumber: 5.5 Consensus size: 11
33012882 ATAAATATTC
33012892 TATTAATTTAA
1 TATTAATTTAA
33012903 TA--AGATTTAA
1 TATTA-ATTTAA
33012913 TATTAAATTTAA
1 TATT-AATTTAA
33012925 TA-TAATATT--
1 TATTAAT-TTAA
33012934 TATTAATTTAA
1 TATTAATTTAA
33012945 TATTAA
1 TATTAA
33012951 AGTGATTAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 16
0.71 0.00 0.29
Matches are distributed among these distances:
9 5 0.12
10 15 0.38
11 11 0.28
12 8 0.20
13 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (11 bp):
TATTAATTTAA
Found at i:33012945 original size:15 final size:17
Alignment explanation
Indices: 33012907--33012951 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 17
33012897 ATTTAATAAG
33012907 ATTTAATATTAAATTTA
1 ATTTAATATTAAATTTA
* *
33012924 ATATAATATT-TA-TTA
1 ATTTAATATTAAATTTA
33012939 ATTTAATATTAAA
1 ATTTAATATTAAA
33012952 GTGATTAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
15 12 0.52
16 2 0.09
17 9 0.39
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAATATTAAATTTA
Found at i:33014696 original size:12 final size:13
Alignment explanation
Indices: 33014673--33014712 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
33014663 ACTAAACAGG
33014673 AAAGAAAGAAAGAA
1 AAAG-AAGAAAGAA
*
33014687 AAAGAA-AAAGAG
1 AAAGAAGAAAGAA
33014699 AAAGAAGAAAGAA
1 AAAGAAGAAAGAA
33014712 A
1 A
33014713 GCCACAGCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 11 0.48
13 8 0.35
14 4 0.17
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAAGAAGAAAGAA
Found at i:33014701 original size:26 final size:26
Alignment explanation
Indices: 33014635--33014712 Score: 81
Period size: 26 Copynumber: 3.1 Consensus size: 26
33014625 ACAAATAAAT
* *
33014635 AAAAGAAAAA-AAAAAGAAACAAAGCA
1 AAAAGAAAAAGAGAAAGAAAGAAAG-A
** *
33014661 AAACTAAACAG-GAAAGAAAGAAAGA
1 AAAAGAAAAAGAGAAAGAAAGAAAGA
33014686 AAAAGAAAAAGAGAAAG-AAGAAAGA
1 AAAAGAAAAAGAGAAAGAAAGAAAGA
33014711 AA
1 AA
33014713 GCCACAGCCT
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
25 19 0.45
26 23 0.55
ACGTcount: A:0.76, C:0.05, G:0.18, T:0.01
Consensus pattern (26 bp):
AAAAGAAAAAGAGAAAGAAAGAAAGA
Found at i:33015672 original size:41 final size:40
Alignment explanation
Indices: 33015623--33015709 Score: 147
Period size: 41 Copynumber: 2.1 Consensus size: 40
33015613 CAGTTTAACT
* *
33015623 GATGAGACACTGGGTGTCAATTTACTACTTCAGATTTATTC
1 GATGAGACACTGGGTGTCAATTTACTACTTC-GAATTACTC
33015664 GATGAGACACTGGGTGTCAATTTACTACTTCGAATTACTC
1 GATGAGACACTGGGTGTCAATTTACTACTTCGAATTACTC
33015704 GATGAG
1 GATGAG
33015710 GTGCTAGGTG
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
40 13 0.30
41 31 0.70
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (40 bp):
GATGAGACACTGGGTGTCAATTTACTACTTCGAATTACTC
Found at i:33016951 original size:46 final size:46
Alignment explanation
Indices: 33016886--33017206 Score: 405
Period size: 46 Copynumber: 7.0 Consensus size: 46
33016876 TTATCTTCGA
* * * * * *
33016886 CATGATGCCATAGTGTCTTTCAACTATGATCTTACTCACTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* * ***
33016932 CATGTTGCCATGGTATCTTTCAACCATCGTCTTATTCATTTCCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTT-CATAT
* * *
33016979 GATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
33017025 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
*
33017071 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAT-ATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCATAT
* *
33017117 CATGTTGCCATGGTTTCTTTCAACCATGGTCTTACAT-ATTCCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCATAT
*
33017163 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
33017207 TTCAGAAAGC
Statistics
Matches: 246, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
45 3 0.01
46 202 0.82
47 41 0.17
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:33019314 original size:8 final size:8
Alignment explanation
Indices: 33019301--33019329 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
33019291 TATATTAAAT
33019301 AAATAATA
1 AAATAATA
33019309 AAATAATA
1 AAATAATA
33019317 AAATAATA
1 AAATAATA
33019325 AAATA
1 AAATA
33019330 TCTCATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAATA
Found at i:33031686 original size:23 final size:23
Alignment explanation
Indices: 33031608--33031691 Score: 71
Period size: 23 Copynumber: 3.5 Consensus size: 23
33031598 CAGCTCGTAT
33031608 GAGCTTACTGATATATCAGCTC-ATAA
1 GAGCTTACTG-T-T-TCAGCTCAAT-A
* * **
33031634 AAGCTTACTGTTTTTAGCTCGTTA
1 GAGCTTACTG-TTTCAGCTCAATA
33031658 GAGCTTACTGTTTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
*
33031681 GGGCTTACTGT
1 GAGCTTACTGT
33031692 CCATCAGCTC
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
23 20 0.42
24 16 0.33
25 2 0.04
26 10 0.21
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:33035187 original size:46 final size:46
Alignment explanation
Indices: 33035116--33035206 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
33035106 CCCCAATAGA
* * * * *
33035116 TACATCTGCACAAAGTCTGCTAGGCACAAAGCTCGATACATTACAG
1 TACATCGGCACAAAGCCTACTAGGCACAAAGCCCAATACATTACAG
*
33035162 TACATCGGCATAAAGCCTACTAGGCACAAAGCCCAATACATTACA
1 TACATCGGCACAAAGCCTACTAGGCACAAAGCCCAATACATTACA
33035207 CTCAATACAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.20
Consensus pattern (46 bp):
TACATCGGCACAAAGCCTACTAGGCACAAAGCCCAATACATTACAG
Found at i:33040639 original size:41 final size:41
Alignment explanation
Indices: 33040582--33040727 Score: 204
Period size: 41 Copynumber: 3.6 Consensus size: 41
33040572 GGGTTTAAAT
33040582 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
*
33040623 CGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCATAA-C
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
* * * * * * * *
33040663 CGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATAATC
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
33040704 CGAGCTTGGTCTCGAAGGGCTTTT
1 CGAGCTTGGTCTCGAAGGGCTTTT
33040728 TGAGTCAGCG
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.35
41 57 0.65
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC
Found at i:33048743 original size:41 final size:41
Alignment explanation
Indices: 33048686--33048835 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
33048676 TCGGGGTTTA
*
33048686 AATCCGAGCTTGGTCTCAAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
33048727 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
33048768 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
33048808 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
33048836 TGAGTCAGCG
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 60 0.66
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:33052222 original size:38 final size:38
Alignment explanation
Indices: 33052171--33052249 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
33052161 CATGAAAAAA
33052171 AATGAGAAAGAAAACTCTCTCTTACCATCCACTATTTC
1 AATGAGAAAGAAAACTCTCTCTTACCATCCACTATTTC
33052209 AATGAGAAAGAAAACTCTCTCTTACCATCCACTATTTC
1 AATGAGAAAGAAAACTCTCTCTTACCATCCACTATTTC
33052247 AAT
1 AAT
33052250 ATCTTTCTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (38 bp):
AATGAGAAAGAAAACTCTCTCTTACCATCCACTATTTC
Found at i:33052623 original size:16 final size:16
Alignment explanation
Indices: 33052602--33052634 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33052592 GGTCCCGATA
33052602 CCTCAATTTTCAAAAT
1 CCTCAATTTTCAAAAT
33052618 CCTCAATTTTCAAAAT
1 CCTCAATTTTCAAAAT
33052634 C
1 C
33052635 ATCGACTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.36
Consensus pattern (16 bp):
CCTCAATTTTCAAAAT
Found at i:33058581 original size:29 final size:28
Alignment explanation
Indices: 33058534--33058630 Score: 113
Period size: 28 Copynumber: 3.4 Consensus size: 28
33058524 CATGAGATTG
* *
33058534 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-AATTACATA
* * *
33058563 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTACATA
* *
33058591 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTACATA
*
33058619 ACACTAAGTGTG
1 GCACTAAGTGTG
33058631 TGGACTTACT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
28 44 0.72
29 17 0.28
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTACATA
Found at i:33058600 original size:28 final size:28
Alignment explanation
Indices: 33058560--33058630 Score: 124
Period size: 28 Copynumber: 2.5 Consensus size: 28
33058550 TTTAAATTGC
33058560 ATAGCACTAAGTGTGCAAGTTTGATTAT
1 ATAGCACTAAGTGTGCAAGTTTGATTAT
*
33058588 ATAGCACTAAGTGTGCGAGTTTGATTAT
1 ATAGCACTAAGTGTGCAAGTTTGATTAT
*
33058616 ATAACACTAAGTGTG
1 ATAGCACTAAGTGTG
33058631 TGGACTTACT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (28 bp):
ATAGCACTAAGTGTGCAAGTTTGATTAT
Found at i:33070087 original size:93 final size:93
Alignment explanation
Indices: 33069956--33070126 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
33069946 GCCCTTAAGT
* * * *
33069956 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
*
33070021 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAATTCGGATGCCTAGTTACATTTCAC
* *
33070049 GAACTCGGACTCAACTCAACGAGTTCGGACATTAGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
33070114 CGAATTCGGATGC
66 CGAATTCGGATGC
33070127 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAATTCGGATGCCTAGTTACATTTCAC
Found at i:33070123 original size:46 final size:46
Alignment explanation
Indices: 33069951--33070123 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
33069941 TGCCCGCCCT
* * * * *
33069951 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTAGCATCCA
* *
33069997 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTAGCATCCA
* *
33070045 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTAGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTAGCATCCA
*
33070090 TAAGTGAACTCGGACTCAACTCAACGAATTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
33070124 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 1 0.01
45 2 0.02
46 58 0.56
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTAGCATCCA
Found at i:33078779 original size:42 final size:42
Alignment explanation
Indices: 33078715--33078798 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
33078705 GCTTCAGAGA
*
33078715 AATCTTGGATTTGCTTCCTAGTTCCCTTCTCTTTAAATTTCT
1 AATCCTGGATTTGCTTCCTAGTTCCCTTCTCTTTAAATTTCT
33078757 AATCCTGGATTTGCTTCCTAGTTCCCTTCTCTTTAAATTTCT
1 AATCCTGGATTTGCTTCCTAGTTCCCTTCTCTTTAAATTTCT
33078799 TGTTTATGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.17, C:0.25, G:0.10, T:0.49
Consensus pattern (42 bp):
AATCCTGGATTTGCTTCCTAGTTCCCTTCTCTTTAAATTTCT
Found at i:33080992 original size:53 final size:54
Alignment explanation
Indices: 33080911--33081025 Score: 205
Period size: 53 Copynumber: 2.1 Consensus size: 54
33080901 GGAAGCGTTT
*
33080911 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTG-CACATATATCTGTCC
1 TGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCC
*
33080964 TGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCC
33081018 TGGTGGCT
1 TGGTGGCT
33081026 CTGGAACAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
53 37 0.63
54 22 0.37
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCC
Found at i:33081026 original size:27 final size:26
Alignment explanation
Indices: 33080911--33081049 Score: 154
Period size: 27 Copynumber: 5.2 Consensus size: 26
33080901 GGAAGCGTTT
* *
33080911 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAA-TATCTGTTC
*
33080938 TGGTGGCTCTG-CACATATATCTGTCC
1 TGGTGGCTCTGCCACA-ATATCTGTTC
* **
33080964 TGGTGGCTATGCCACAATTATCTAATC
1 TGGTGGCTCTGCCACAA-TATCTGTTC
33080991 TGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACA-ATATCTGTTC
**
33081018 TGGTGGCTCTGGAACAATATCTGTATC
1 TGGTGGCTCTGCCACAATATCTGT-TC
33081045 TGGTG
1 TGGTG
33081050 ACTTCATCAC
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
26 30 0.32
27 64 0.67
28 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTC
Found at i:33081035 original size:54 final size:53
Alignment explanation
Indices: 33080911--33081049 Score: 190
Period size: 53 Copynumber: 2.6 Consensus size: 53
33080901 GGAAGCGTTT
* *
33080911 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCACATATATCTGTCC
1 TGGTGGCTATGCAACAATTATCTAATCTGGTGGCTCTGCACATATATCTGTCC
* *
33080964 TGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCAACAATTATCTAATCTGGTGGCTCTG-CACATATATCTGTCC
* * *
33081018 TGGTGGCTCTGGAACAA-TATCTGTATCTGGTG
1 TGGTGGCTATGCAACAATTATCT-AATCTGGTG
33081050 ACTTCATCAC
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 42 0.54
54 36 0.46
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (53 bp):
TGGTGGCTATGCAACAATTATCTAATCTGGTGGCTCTGCACATATATCTGTCC
Found at i:33086914 original size:27 final size:27
Alignment explanation
Indices: 33086872--33087012 Score: 148
Period size: 27 Copynumber: 5.2 Consensus size: 27
33086862 AGGAAGCGTC
*
33086872 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
33086899 CTGGTGGCTCTACCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
33086925 CCTGGTGGCTATGCCACAATTATCTAAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
33086953 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
33086980 CTGGTGGCTCTAG-CACAA-TATCTATAT
1 CTGGTGGCTCT-GCCACAATTATCT-GAT
33087007 CTGGTG
1 CTGGTG
33087013 ACTTCGTCAT
Statistics
Matches: 96, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
26 10 0.10
27 81 0.84
28 5 0.05
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:33086955 original size:54 final size:54
Alignment explanation
Indices: 33086869--33087012 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
33086859 TGGAGGAAGC
*
33086869 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATATCT
*
33086923 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATATCT
* *
33086977 GTTCTGGTGGCTCTAG-CACAA-TATCTATATCTGGTG
1 GTCCTGGTGGCTAT-GCCACAATTATCTA-ATCTGGTG
33087013 ACTTCGTCAT
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
53 6 0.07
54 77 0.92
55 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATATCT
Found at i:33088712 original size:37 final size:37
Alignment explanation
Indices: 33088671--33088783 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 37
33088661 TGGCACATAC
33088671 AGTGCATCAATGGATAAATCGAAGAAAATATATACAT
1 AGTGCATCAATGGATAAATCGAAGAAAATATATACAT
* * *
33088708 AGTGCATCAACGTATAAATTGAAGAAAATATACTAGCATACAT
1 AGTGCATCAATGGATAAATCGAAG-AAA-ATA-T---ATACAT
*
33088751 AGTTCATC-ATCGGATAAATCGAAGAAAATATAT
1 AGTGCATCAAT-GGATAAATCGAAGAAAATATAT
33088784 CGGTACACAC
Statistics
Matches: 62, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
37 23 0.37
38 3 0.05
39 3 0.05
40 2 0.03
41 3 0.05
42 4 0.06
43 24 0.39
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.26
Consensus pattern (37 bp):
AGTGCATCAATGGATAAATCGAAGAAAATATATACAT
Found at i:33091930 original size:17 final size:17
Alignment explanation
Indices: 33091908--33091941 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
33091898 TTTGGGCTTA
33091908 AATGGG-TCGTGTGGCCC
1 AATGGGCTCGTG-GGCCC
33091925 AATGGGCTCGTGGGCCC
1 AATGGGCTCGTGGGCCC
33091942 TATCAGGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.12, C:0.26, G:0.41, T:0.21
Consensus pattern (17 bp):
AATGGGCTCGTGGGCCC
Found at i:33098092 original size:48 final size:48
Alignment explanation
Indices: 33097990--33098130 Score: 140
Period size: 48 Copynumber: 2.9 Consensus size: 48
33097980 GGATACTTAG
* * * * * * * *
33097990 GAATTTCGCACACTAAGTGCTCATATTATGACCCGAAGCCAACTTAAT
1 GAATCTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAAT
33098038 -ATATCTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAAT
1 GA-ATCTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAAT
** * ** *
33098086 GAATCTCAAACCTGAAGTGCCGATATCATGGCCCAAAGCCAAATC
1 GAATCTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATC
33098131 TATGTATCCC
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
47 1 0.01
48 75 0.97
49 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (48 bp):
GAATCTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAAT
Found at i:33106657 original size:96 final size:96
Alignment explanation
Indices: 33106493--33106682 Score: 335
Period size: 96 Copynumber: 2.0 Consensus size: 96
33106483 TGTTGGAAAC
* * *
33106493 GAACTGGGGCATGCTTTATATGTGGGTTTATGGATCGTCAGTTTAAGAACTGTACTCAGGGGTTT
1 GAACTGGGGCATGCTTTAGATGTGGGTCTATGGATCATCAGTTTAAGAACTGTACTCAGGGGTTT
*
33106558 ACTTAGATGCAAGTTGCAGGACAGGGTCGAT
66 ACTTAGATGCAAGCTGCAGGACAGGGTCGAT
33106589 GAACTGGGGCATGCTTTAGATGTGGGTCTATGGATCATCAGTTTAAGAACTGTACTCAGGGGTTT
1 GAACTGGGGCATGCTTTAGATGTGGGTCTATGGATCATCAGTTTAAGAACTGTACTCAGGGGTTT
*
33106654 ACTTTGATGCAAGCTGCAGGACAGGGTCG
66 ACTTAGATGCAAGCTGCAGGACAGGGTCG
33106683 TGTTCAGCCT
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 89 1.00
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.30
Consensus pattern (96 bp):
GAACTGGGGCATGCTTTAGATGTGGGTCTATGGATCATCAGTTTAAGAACTGTACTCAGGGGTTT
ACTTAGATGCAAGCTGCAGGACAGGGTCGAT
Found at i:33107215 original size:13 final size:13
Alignment explanation
Indices: 33107197--33107222 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33107187 AAGCAATCGT
33107197 ACATGGGCGTGTC
1 ACATGGGCGTGTC
33107210 ACATGGGCGTGTC
1 ACATGGGCGTGTC
33107223 CCTGTCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.23
Consensus pattern (13 bp):
ACATGGGCGTGTC
Found at i:33111437 original size:55 final size:55
Alignment explanation
Indices: 33111321--33111439 Score: 150
Period size: 55 Copynumber: 2.2 Consensus size: 55
33111311 CTACCAAAAC
* * *
33111321 AACACGGGCATGCAACACGCCCGTGTCGTAGAACCGTGGTTGAACTTGAGAATAT
1 AACACGGGCATGCAACACGCCCGTGTCGTAGAACCGTGGTCGAACCTGACAATAT
* * * * *
33111376 AGCACGGGCATTCATCACGCCCGTGTC-TAGAACCCGTGGTCGAACCTGTCAATTT
1 AACACGGGCATGCAACACGCCCGTGTCGTAGAA-CCGTGGTCGAACCTGACAATAT
33111431 AACACGGGC
1 AACACGGGC
33111440 GTGCGCCTCC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 5 0.09
55 49 0.91
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (55 bp):
AACACGGGCATGCAACACGCCCGTGTCGTAGAACCGTGGTCGAACCTGACAATAT
Found at i:33116335 original size:46 final size:47
Alignment explanation
Indices: 33116229--33116350 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
33116219 TGTCTTCGAC
* * *
33116229 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
33116279 ATGGGCTTACATGACTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCAATATATCTAAT
* *
33116325 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGACTCATTCCTGTC
33116351 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 33 0.52
50 31 0.48
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGACTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:33124457 original size:28 final size:27
Alignment explanation
Indices: 33124425--33124486 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
33124415 ATTGTGATTA
*
33124425 TACTGTTTTGGGCATAGGCCCACACTG
1 TACTGTTTAGGGCATAGGCCCACACTG
** * *
33124452 TTACTGCATAGGGCTTAGGCCCAGACTG
1 -TACTGTTTAGGGCATAGGCCCACACTG
33124480 TACTGTT
1 TACTGTT
33124487 AATAAACAGG
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.19, C:0.24, G:0.26, T:0.31
Consensus pattern (27 bp):
TACTGTTTAGGGCATAGGCCCACACTG
Found at i:33126019 original size:13 final size:13
Alignment explanation
Indices: 33126001--33126027 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
33125991 TAAGCAATCG
33126001 CACACGGGCGTGT
1 CACACGGGCGTGT
33126014 CACACGGGCGTGT
1 CACACGGGCGTGT
33126027 C
1 C
33126028 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:33132943 original size:79 final size:81
Alignment explanation
Indices: 33132807--33132991 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
33132797 TTGAATGATG
*
33132807 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33132871 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33132886 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33132948 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
33132966 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33132992 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:33133005 original size:40 final size:40
Alignment explanation
Indices: 33132808--33132991 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
33132798 TGAATGATGT
* * * *
33132808 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33132848 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
33132888 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33132926 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33132967 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33132992 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33133013 original size:79 final size:79
Alignment explanation
Indices: 33132808--33133024 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
33132798 TGAATGATGT
** * * * **
33132808 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
33132871 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
33132888 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
33132953 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
33132967 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
33133025 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:33140760 original size:40 final size:40
Alignment explanation
Indices: 33140676--33140899 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
33140666 TTGAATGATG
* * * *
33140676 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
33140716 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
33140756 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33140794 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33140834 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33140875 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33140900 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33140894 original size:80 final size:80
Alignment explanation
Indices: 33140676--33140899 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
33140666 TTGAATGATG
* * * * *
33140676 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
33140739 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
33140756 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
33140818 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
33140834 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
33140899 G
66 G
33140900 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:33145260 original size:14 final size:14
Alignment explanation
Indices: 33145238--33145267 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
33145228 GATAAATATT
*
33145238 TTATTTGTTCTTAA
1 TTATGTGTTCTTAA
33145252 TTATGTGTTCTTAA
1 TTATGTGTTCTTAA
33145266 TT
1 TT
33145268 CTTGTCTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.10, T:0.63
Consensus pattern (14 bp):
TTATGTGTTCTTAA
Found at i:33161611 original size:25 final size:24
Alignment explanation
Indices: 33161560--33161639 Score: 75
Period size: 24 Copynumber: 3.6 Consensus size: 24
33161550 TTGCTTTTTT
* * *
33161560 TAATAAATAAAAAACTTTAAAATA
1 TAATAAATCAAATACTTTAAAACA
33161584 TAATAAATCAAATACATTTAAAACA
1 TAATAAATCAAATAC-TTTAAAACA
33161609 TAA-AAA-CAAATA--TTAAAACA
1 TAATAAATCAAATACTTTAAAACA
33161629 -AA-AAA-CAAATA
1 TAATAAATCAAATA
33161640 AAAAAATAAG
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
19 11 0.21
20 8 0.15
23 6 0.12
24 16 0.31
25 11 0.21
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.24
Consensus pattern (24 bp):
TAATAAATCAAATACTTTAAAACA
Found at i:33161634 original size:19 final size:20
Alignment explanation
Indices: 33161601--33161639 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
33161591 TCAAATACAT
33161601 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
33161621 TTAAAACA-AAAAACAAATA
1 TTAAAACATAAAAACAAATA
33161640 AAAAAATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.18
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:33161645 original size:19 final size:20
Alignment explanation
Indices: 33161603--33161645 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
33161593 AAATACATTT
**
33161603 AAAACATAAAAACAAATATT
1 AAAACATAAAAACAAATAAA
33161623 AAAACA-AAAAACAAATAAA
1 AAAACATAAAAACAAATAAA
33161642 AAAA
1 AAAA
33161646 TAAGACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (20 bp):
AAAACATAAAAACAAATAAA
Found at i:33163909 original size:35 final size:35
Alignment explanation
Indices: 33163863--33163934 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
33163853 TAAATATGAA
33163863 TACTAGAAACTTGGTTACATAGTTTGGATTCCTTC
1 TACTAGAAACTTGGTTACATAGTTTGGATTCCTTC
33163898 TACTAGAAACTTGGTTACATAGTTTGGATTCCTTC
1 TACTAGAAACTTGGTTACATAGTTTGGATTCCTTC
33163933 TA
1 TA
33163935 TGTCTTCAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (35 bp):
TACTAGAAACTTGGTTACATAGTTTGGATTCCTTC
Found at i:33166072 original size:48 final size:46
Alignment explanation
Indices: 33165957--33166083 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 46
33165947 TGATATGTGT
*
33165957 GCTAGTGTAAGACATGTCTGGGACCTGCATCAGCCACATTACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTACGAGA
* *
33166003 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATAC-A-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCC---ACAT-TACGAGA
*
33166051 GGTAGTGTAAGACATGTCTGGGACATGGCATCA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCA
33166084 ACTTGTTGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
46 33 0.46
48 26 0.37
49 9 0.13
50 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTACGAGA
Found at i:33166161 original size:49 final size:49
Alignment explanation
Indices: 33166100--33166274 Score: 205
Period size: 49 Copynumber: 3.6 Consensus size: 49
33166090 TGTGTGTCAA
* *
33166100 TGTAAGACCTGTCGGGGACATGGCATCGATATTGATAGATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGATATTGATAGATGAAAGCCAG
* ** * *
33166149 TGTAAGACCTGTCTGGGACATGACATCAGCCA-TGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATC-GATATTGATAGATGAAAGCCAG
**
33166198 TGTAAGACCTGTCTGGGACATGGCATCGACT-TTGAT-G-TGCTAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGA-TATTGATAGATGAAAGCCAG
*
33166245 TGTAAGACCATGTCTGGGACATGGCGTCGA
1 TGTAAGACC-TGTCTGGGACATGGCATCGA
33166275 CATCTTATCC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
47 16 0.15
48 20 0.19
49 69 0.64
50 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGATATTGATAGATGAAAGCCAG
Found at i:33173042 original size:13 final size:15
Alignment explanation
Indices: 33173024--33173060 Score: 51
Period size: 13 Copynumber: 2.5 Consensus size: 15
33173014 ATTTAAACTG
33173024 ATAATTAA-T-TAAT
1 ATAATTAACTCTAAT
33173037 ATAATTAACTCTAAT
1 ATAATTAACTCTAAT
33173052 ATTAATTAA
1 A-TAATTAA
33173061 GTGATAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.38
14 1 0.05
15 5 0.24
16 7 0.33
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (15 bp):
ATAATTAACTCTAAT
Found at i:33173545 original size:13 final size:15
Alignment explanation
Indices: 33173527--33173558 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
33173517 TATTTTATTT
33173527 TATTTTT-AATT-AA
1 TATTTTTAAATTAAA
33173540 TATTTTTAAATTAAA
1 TATTTTTAAATTAAA
33173555 TATT
1 TATT
33173559 ATAATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 4 0.24
15 6 0.35
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTTTTAAATTAAA
Found at i:33173579 original size:25 final size:24
Alignment explanation
Indices: 33173540--33173588 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
33173530 TTTTAATTAA
33173540 TATTTTTAAATTAAATATTA-TAAT
1 TATTTTTAAATTAAAT-TTAGTAAT
*
33173564 TATTTTTAATTGTAAATTTAGTAAT
1 TATTTTTAAAT-TAAATTTAGTAAT
33173589 ATGATAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (24 bp):
TATTTTTAAATTAAATTTAGTAAT
Found at i:33175431 original size:26 final size:25
Alignment explanation
Indices: 33175397--33175470 Score: 75
Period size: 24 Copynumber: 3.1 Consensus size: 25
33175387 TGCGCACTAT
33175397 TATAT-GAGTGCCCTTTATGGGACG
1 TATATAGAGTGCCCTTTATGGGACG
* *
33175421 TATATAAGAGT--CCTTTGTTGGACG
1 TATAT-AGAGTGCCCTTTATGGGACG
* *
33175445 TATAT-GAGAGCCATTTATGGGACG
1 TATATAGAGTGCCCTTTATGGGACG
33175469 TA
1 TA
33175471 AAGGAATTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
22 3 0.08
24 33 0.82
26 4 0.10
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.34
Consensus pattern (25 bp):
TATATAGAGTGCCCTTTATGGGACG
Found at i:33175435 original size:24 final size:23
Alignment explanation
Indices: 33175408--33175470 Score: 81
Period size: 24 Copynumber: 2.7 Consensus size: 23
33175398 ATATGAGTGC
33175408 CCTTTATGGGACGTATATAAGAG
1 CCTTTATGGGACGTATATAAGAG
* * *
33175431 TCCTTTGTTGGACGTATATGAGAG
1 -CCTTTATGGGACGTATATAAGAG
33175455 CCATTTATGGGACGTA
1 CC-TTTATGGGACGTA
33175471 AAGGAATTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
23 2 0.06
24 31 0.94
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (23 bp):
CCTTTATGGGACGTATATAAGAG
Found at i:33176070 original size:30 final size:30
Alignment explanation
Indices: 33176036--33176098 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
33176026 ACTTATTTTA
33176036 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
33176066 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
33176096 TTG
1 TTG
33176099 ATTTTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:33176217 original size:18 final size:18
Alignment explanation
Indices: 33176181--33176219 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
33176171 GAAATATTTA
*
33176181 TTTTGATGTTTTTAGTAT
1 TTTTGATGTTTATAGTAT
33176199 TTTTGATGTATTATA-TAT
1 TTTTGATGT-TTATAGTAT
33176217 TTT
1 TTT
33176220 AAAATTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.67
Consensus pattern (18 bp):
TTTTGATGTTTATAGTAT
Found at i:33177772 original size:15 final size:17
Alignment explanation
Indices: 33177754--33177792 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
33177744 ACAAATCAAT
33177754 AAAAAGAA-T-AAAAGA
1 AAAAAGAATTAAAAAGA
33177769 AAAAAGAATTAAAAAGA
1 AAAAAGAATTAAAAAGA
33177786 ACAAAAG
1 A-AAAAG
33177793 CAAGAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 1 0.05
17 7 0.33
18 5 0.24
ACGTcount: A:0.77, C:0.03, G:0.13, T:0.08
Consensus pattern (17 bp):
AAAAAGAATTAAAAAGA
Found at i:33180843 original size:42 final size:43
Alignment explanation
Indices: 33180733--33180895 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 43
33180723 TCGGTATGTA
* ** * *
33180733 ATTTCGTGTAAGACCACGTCTGGGACCTTGGCAGCGAT-TTGAG
1 ATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCGATATT-TG
*
33180776 ATTTACGTGTAAGACCATGTCTGGGATA-TCGGCATCG-TATTTG
1 ATTT-CGTGTAAGACCATGTCTGGGACAGT-GGCATCGATATTTG
* * *
33180819 ATTTCGTGTAAGGCCTTGTTTGGGACAGTGGCATCGATATTTG
1 ATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTG
* * * *
33180862 ATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 ATTTCGTGTAAGACCATGTCTGGGACAGTGGCAT
33180896 TGTTCAAGAT
Statistics
Matches: 99, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 26 0.26
43 45 0.45
44 28 0.28
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
ATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTG
Found at i:33182685 original size:49 final size:48
Alignment explanation
Indices: 33182534--33182757 Score: 208
Period size: 49 Copynumber: 4.6 Consensus size: 48
33182524 TATTTGCGCT
* * *
33182534 AGTGTAAGACATGTCTGCGACATGCATCGACCAC-AT-TATG-AGAGCC
1 AGTGTAAGACCTGTCTGGGACATGCATCGACCTCAATATATGCA-AGCC
** * * *
33182580 AGTGTAACTCATGTCTGGGACATGCATCGACCTCGAGATATGCAAGCC
1 AGTGTAAGACCTGTCTGGGACATGCATCGACCTCAATATATGCAAGCC
* *
33182628 AGTGTAAGACCTGTCTGGGACATGTCATTGACAC-CAATAGATG-AGAGCC
1 AGTGTAAGACCTGTCTGGGACATG-CATCGAC-CTCAATATATGCA-AGCC
* * * * *
33182677 AGTGTAAGACCTGTCTGGGACATGGCAT-TAGCCTCGACATATGTAAGTC
1 AGTGTAAGACCTGTCTGGGACAT-GCATCGA-CCTCAATATATGCAAGCC
33182726 AGTGTAAGACCTGTCTGGGACATGGCATCGAC
1 AGTGTAAGACCTGTCTGGGACAT-GCATCGAC
33182758 TTAGATGTGT
Statistics
Matches: 149, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
46 30 0.20
47 1 0.01
48 32 0.21
49 82 0.55
50 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGCATCGACCTCAATATATGCAAGCC
Found at i:33182693 original size:97 final size:95
Alignment explanation
Indices: 33182534--33182757 Score: 274
Period size: 98 Copynumber: 2.3 Consensus size: 95
33182524 TATTTGCGCT
* * * *
33182534 AGTGTAAGACATGTCTGCGACATGCATCGACCACATTATGAGAGCCAGTGTAACTCATGTCTGGG
1 AGTGTAAGACCTGTCTGGGACATGCATCGACCACATGATGAGAGCCAGTGTAACACATGTCTGGG
*
33182599 ACAT-GCATCGA-CCTCGAGATATGCAAGCC
66 ACATGGCAT-GAGCCTCGACATATGCAAGCC
* * *
33182628 AGTGTAAGACCTGTCTGGGACATGTCATTGA-CACCAATAGATGAGAGCCAGTGTAAGACCTGTC
1 AGTGTAAGACCTGTCTGGGACATG-CATCGACCA-C-AT-GATGAGAGCCAGTGTAACACATGTC
* * *
33182692 TGGGACATGGCATTAGCCTCGACATATGTAAGTC
62 TGGGACATGGCATGAGCCTCGACATATGCAAGCC
33182726 AGTGTAAGACCTGTCTGGGACATGGCATCGAC
1 AGTGTAAGACCTGTCTGGGACAT-GCATCGAC
33182758 TTAGATGTGT
Statistics
Matches: 110, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
94 24 0.22
95 6 0.05
96 2 0.02
97 30 0.27
98 47 0.43
99 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (95 bp):
AGTGTAAGACCTGTCTGGGACATGCATCGACCACATGATGAGAGCCAGTGTAACACATGTCTGGG
ACATGGCATGAGCCTCGACATATGCAAGCC
Found at i:33188438 original size:20 final size:19
Alignment explanation
Indices: 33188402--33188452 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
33188392 AAGGGCTATT
*
33188402 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
33188421 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
33188441 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
33188453 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:33189251 original size:36 final size:34
Alignment explanation
Indices: 33189200--33189284 Score: 102
Period size: 36 Copynumber: 2.5 Consensus size: 34
33189190 TACTTTTGTA
*
33189200 TTCCTACTTCAATTTGGAATTGGATTATTCTCTCTT
1 TTCCTACTTCAATTTGGAATTGAATTATT-T-TCTT
* *
33189236 TTCCTATTTCCATTTGGAATTGAATTATTTTCTT
1 TTCCTACTTCAATTTGGAATTGAATTATTTTCTT
33189270 TT-CT-CTTTCAATTTG
1 TTCCTAC-TTCAATTTG
33189285 ACAAGGGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
33 10 0.23
34 6 0.14
35 1 0.02
36 26 0.60
ACGTcount: A:0.19, C:0.18, G:0.09, T:0.54
Consensus pattern (34 bp):
TTCCTACTTCAATTTGGAATTGAATTATTTTCTT
Found at i:33194834 original size:36 final size:33
Alignment explanation
Indices: 33194788--33194862 Score: 89
Period size: 36 Copynumber: 2.2 Consensus size: 33
33194778 TTCCTACTTC
* *
33194788 AATTTAGAATTGTATTATTCTCTCTTTTC-CTATTT
1 AATTTGGAATTGAATTATT-T-TCTTTTCTCT-TTT
33194823 ACATTTGGAATTGAATTATTTTCTTTTCTCTTTT
1 A-ATTTGGAATTGAATTATTTTCTTTTCTCTTTT
33194857 AATTTG
1 AATTTG
33194863 ACGTGGGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
33 5 0.14
34 11 0.31
35 4 0.11
36 16 0.44
ACGTcount: A:0.23, C:0.12, G:0.08, T:0.57
Consensus pattern (33 bp):
AATTTGGAATTGAATTATTTTCTTTTCTCTTTT
Done.