Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 106 of 349
Found at i:33196259 original size:48 final size:47
Alignment explanation
Indices: 33196148--33196368 Score: 182
Period size: 49 Copynumber: 4.6 Consensus size: 47
33196138 TATGTGTGCT
* *
33196148 AGTGTAAGACATGTCTGGGACATGCATTGGCCATA-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATAGATATGAGAGCC
* *
33196194 AGTGTAAGACATGTCTGGGATATGCATCGGCCCTTAGATATGCA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CCATAGATATG-AGAGCC
* *
33196242 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAG--ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCG--GCC-ATAGATATGAGAGCC
* * * * * * * *
33196291 AATGTAAGACTTATCTGGGATATTGCATTGGCC-TCGATATATAGAAGTC
1 AGTGTAAGACATGTCTGGGACA-TGCATCGGCCATAGATAT-GAG-AGCC
*
33196340 AGTGTAAGACCTGTCTGGGACATGGCATC
1 AGTGTAAGACATGTCTGGGACAT-GCATC
33196369 AACTTAGATG
Statistics
Matches: 139, Mismatches: 22, Indels: 25
0.75 0.12 0.13
Matches are distributed among these distances:
45 2 0.01
46 28 0.20
47 8 0.06
48 33 0.24
49 62 0.45
50 3 0.02
51 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATAGATATGAGAGCC
Found at i:33196297 original size:49 final size:48
Alignment explanation
Indices: 33196148--33196416 Score: 178
Period size: 49 Copynumber: 5.6 Consensus size: 48
33196138 TATGTGTGCT
* * * *
33196148 AGTGTAAGACATGTCTGGGACAT-GCATTG-GCC-ATATTATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATA-GATGAGAGCC
* * * *
33196194 AGTGTAAGACATGTCTGGGATAT-GCATCGGCCC-TTAGAT-ATGCAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGA-G--AGCC
33196242 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAGAGCC
* * * * * * * * *
33196291 AATGTAAGACTTATCTGGGATATTGCATTGGCCTCGATATAT-AGAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATGAG-AGCC
* ** *
33196340 AGTGTAAGACCTGTCTGGGACATGGCATCAACTTAGAT-G-TGTGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAGAGCC
* * *
33196387 ATTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACC-TGTCTGGGACATGGCATC
33196417 AGCATCGTAC
Statistics
Matches: 176, Mismatches: 34, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
45 1 0.01
46 30 0.17
47 18 0.10
48 45 0.26
49 73 0.41
50 2 0.01
51 6 0.03
52 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAGAGCC
Found at i:33196361 original size:98 final size:95
Alignment explanation
Indices: 33196148--33196368 Score: 261
Period size: 98 Copynumber: 2.3 Consensus size: 95
33196138 TATGTGTGCT
* * * * * *
33196148 AGTGTAAGACATGTCTGGGACAT-GCATTGGCCATATTATGAGAGCCAGTGTAAGACATGTCTGG
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCATATGATGAGAGCCAATGTAAGACATATCTGG
*
33196212 GATATGCATCGGCCCTTAGATATGCAAGCC
66 GATATGCATCGGCCCATAGATATGCAAGCC
*
33196242 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATA-GATGAGAGCCAATGTAAGACTTATC
1 AGTGTAAGACCTGTCTGGGACATGGCATCG--ACC-ATATGATGAGAGCCAATGTAAGACATATC
* * *
33196306 TGGGATATTGCATTGGCCTCGATATATA-G-AAGTC
63 TGGGATA-TGCATCGGCC-C-ATAGATATGCAAGCC
33196340 AGTGTAAGACCTGTCTGGGACATGGCATC
1 AGTGTAAGACCTGTCTGGGACATGGCATC
33196369 AACTTAGATG
Statistics
Matches: 109, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
94 22 0.20
95 5 0.05
97 30 0.28
98 45 0.41
99 2 0.02
100 5 0.05
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (95 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCATATGATGAGAGCCAATGTAAGACATATCTGG
GATATGCATCGGCCCATAGATATGCAAGCC
Found at i:33196632 original size:76 final size:76
Alignment explanation
Indices: 33196506--33196659 Score: 272
Period size: 76 Copynumber: 2.0 Consensus size: 76
33196496 CAAAATGATA
* * *
33196506 GAACTTATGGCTATGTTGTGAGTGGTACAGGTACTTGCATGAAATTGATGATGTGTGAATTCAAT
1 GAACTTATGGCTATATTGTGAGTGGTACAGGTACTTACATGAAATTGATGAGGTGTGAATTCAAT
*
33196571 TCTTGTTGTAT
66 TCATGTTGTAT
33196582 GAACTTATGGCTATATTGTGAGTGGTACAGGTACTTACATGAAATTGATGAGGTGTGAATTCAAT
1 GAACTTATGGCTATATTGTGAGTGGTACAGGTACTTACATGAAATTGATGAGGTGTGAATTCAAT
33196647 TCATGTTGTAT
66 TCATGTTGTAT
33196658 GA
1 GA
33196660 TTAGTAAGGA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.27, C:0.09, G:0.26, T:0.38
Consensus pattern (76 bp):
GAACTTATGGCTATATTGTGAGTGGTACAGGTACTTACATGAAATTGATGAGGTGTGAATTCAAT
TCATGTTGTAT
Found at i:33208277 original size:13 final size:13
Alignment explanation
Indices: 33208259--33208288 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
33208249 GTGCCTAGGA
33208259 TAAAACATGAAAT
1 TAAAACATGAAAT
33208272 TAAAACATGAAAT
1 TAAAACATGAAAT
33208285 TAAA
1 TAAA
33208289 GGATTAGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.23
Consensus pattern (13 bp):
TAAAACATGAAAT
Found at i:33215522 original size:43 final size:44
Alignment explanation
Indices: 33215348--33215520 Score: 180
Period size: 43 Copynumber: 4.0 Consensus size: 44
33215338 CAGAGGATTT
* * *
33215348 TCGATATGTGATTT-CGTGTAAGACCACATCTGGGACGTTCGCA
1 TCGATATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * * *
33215391 TCGAT-TTGAGATTTAGGTGTAAGACCATGTCTGGGACATCGGCA
1 TCGATATT-TGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
33215435 TCG-TATTTGATTT-CGTGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATTTGATTTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCA
* *
33215477 TTGATATTTG-TTTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
33215520 T
1 T
33215521 TGTACGAGCT
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 30 0.28
43 47 0.44
44 29 0.27
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (44 bp):
TCGATATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:33220406 original size:27 final size:26
Alignment explanation
Indices: 33220357--33220416 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
33220347 GCGAGGCTGC
33220357 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGTCACCAGA-A
* *
33220384 CAGATATTGTGGCTAAG-CTACCAGAA
1 CAGATATTGTGACAAAGTC-ACCAGAA
33220410 CAGATAT
1 CAGATAT
33220417 ATATATGTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAAAGTCACCAGAA
Found at i:33221188 original size:27 final size:27
Alignment explanation
Indices: 33221158--33221357 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
33221148 AGGGCAAAAT
* * *
33221158 GGTAATTTTACCCCACAAGGGTATATC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
33221185 GGTAATTATACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
33221212 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
33221239 AGTAATTCTATCCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
*
33221266 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
33221293 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
33221320 AATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
33221347 GGTAATTCTAC
1 GGTAATTCTAC
33221358 AACTTATCCA
Statistics
Matches: 152, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 149 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:33221230 original size:54 final size:54
Alignment explanation
Indices: 33221158--33221357 Score: 265
Period size: 54 Copynumber: 3.7 Consensus size: 54
33221148 AGGGCAAAAT
* * * * *
33221158 GGTAATTTTACCCCACAAGGGTATATCGGTAATTATACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
33221212 GGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
33221266 GGTAATTCTACCCTACATGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
** * * *
33221320 AATAATTCTACCTTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
33221358 AACTTATCCA
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 127 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:33221354 original size:81 final size:81
Alignment explanation
Indices: 33221176--33221357 Score: 267
Period size: 81 Copynumber: 2.2 Consensus size: 81
33221166 TACCCCACAA
* * ** * *
33221176 GGGTATATCGGTAATTATACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAA
33221241 TAATTCTATCCTACAG
66 TAATTCTATCCTACAG
* * *
33221257 AGGTATTTCGGTAATTCTACCCTACATGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAA
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAA
33221322 TAATTCTA-CCTTACAG
66 TAATTCTATCC-TACAG
33221338 GGGTATTTCGGTAATTCTAC
1 GGGTATTTCGGTAATTCTAC
33221358 AACTTATCCA
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 2 0.02
81 88 0.98
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCAA
TAATTCTATCCTACAG
Found at i:33224353 original size:12 final size:12
Alignment explanation
Indices: 33224336--33224360 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33224326 GCAATTCCAA
33224336 AAAAATTATATC
1 AAAAATTATATC
33224348 AAAAATTATATC
1 AAAAATTATATC
33224360 A
1 A
33224361 TTTATTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAAATTATATC
Found at i:33229937 original size:17 final size:17
Alignment explanation
Indices: 33229897--33229963 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 17
33229887 ATATTAATAT
**
33229897 AAATAAATTAAGTTTAA
1 AAATAAATTATTTTTAA
33229914 GAAATAAATTATTTTTAA
1 -AAATAAATTATTTTTAA
33229932 AAATAAGATTAATTTATTAA
1 AAATAA-ATT-ATTT-TTAA
33229952 ACAATATAATTA
1 A-AATA-AATTA
33229964 CATTTGGTGC
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
17 6 0.14
18 18 0.43
19 4 0.10
20 6 0.14
21 7 0.17
22 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.39
Consensus pattern (17 bp):
AAATAAATTATTTTTAA
Found at i:33233857 original size:46 final size:46
Alignment explanation
Indices: 33233682--33233857 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
33233672 TGTAACCCGC
* * * *
33233682 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
33233728 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * * *
33233778 --TTCA-CGAATTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
33233821 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
33233858 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 62 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:33247182 original size:79 final size:81
Alignment explanation
Indices: 33247040--33247222 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
33247030 TACTCGTTCA
* * *
33247040 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTTGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCGGA
* *
33247104 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
**
33247120 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCC-TTCGGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTTCGGA-CTTAACCCGG
* *
33247182 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
33247199 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33247223 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 5 0.06
79 56 0.63
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTTCGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:33247222 original size:40 final size:40
Alignment explanation
Indices: 33247019--33247222 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
33247009 CGGAATTTAA
** *
33247019 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
33247059 CCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33247099 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
33247138 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
33247178 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
33247218 CCGGA
1 CCGGA
33247223 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:33255068 original size:40 final size:40
Alignment explanation
Indices: 33255024--33255207 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
33255014 GCTTCTCGTT
*
33255024 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
33255064 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* **
33255104 CCAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
33255143 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
**
33255184 CAAA-GCCTTAAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
33255208 ACATCATTCG
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 72 0.60
41 17 0.14
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:33255192 original size:79 final size:80
Alignment explanation
Indices: 33255052--33255206 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 80
33255042 AGCCCGGTTA
* * * *
33255052 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGCCTT-CG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACCAAAGCCTTAAG
*
33255116 GGCTTAGCCCGAAAT
66 GACTTAGCCCGAAAT
** * * *
33255131 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTA
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAGATATAGTAAC-TAGCACCAAAGCCTTA
33255194 AGGACTTAGCCCG
64 AGGACTTAGCCCG
33255207 GACATCATTC
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
78 3 0.05
79 45 0.71
80 15 0.24
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATAGTAACTAGCACCAAAGCCTTAAG
GACTTAGCCCGAAAT
Found at i:33259479 original size:79 final size:81
Alignment explanation
Indices: 33259343--33259525 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
33259333 TCGAATGATG
* *
33259343 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33259407 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33259422 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33259484 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
33259502 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33259526 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:33259541 original size:40 final size:40
Alignment explanation
Indices: 33259344--33259527 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
33259334 CGAATGATGT
* * * *
33259344 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33259384 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
33259424 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33259462 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33259503 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33259528 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33259549 original size:79 final size:79
Alignment explanation
Indices: 33259396--33259550 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
33259386 GGACTAAGAT
* **
33259396 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
33259461 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
33259475 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
33259538 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
33259551 ATTCGAAGGT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:33265454 original size:79 final size:81
Alignment explanation
Indices: 33265318--33265500 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
33265308 TCGAATGATG
* *
33265318 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
33265382 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
33265397 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
33265459 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
33265477 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33265501 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:33265516 original size:40 final size:40
Alignment explanation
Indices: 33265319--33265502 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
33265309 CGAATGATGT
* * * *
33265319 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
33265359 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
33265399 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33265437 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
33265478 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33265503 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33265524 original size:79 final size:79
Alignment explanation
Indices: 33265371--33265525 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
33265361 GGACTAAGAT
* **
33265371 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
33265436 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
33265450 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
33265513 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
33265526 ATTCGAAGGT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:33269402 original size:27 final size:26
Alignment explanation
Indices: 33269369--33269430 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
33269359 ATTTATTAAA
*
33269369 ATACCCCTAACTATAAAAATTACCATT
1 ATACCCCTAACT-GAAAAATTACCATT
* ** *
33269396 TTACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAACTGAAAAATTACCATT
33269422 ATACCCCTA
1 ATACCCCTA
33269431 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.37, C:0.29, G:0.05, T:0.29
Consensus pattern (26 bp):
ATACCCCTAACTGAAAAATTACCATT
Found at i:33269607 original size:28 final size:28
Alignment explanation
Indices: 33269537--33269629 Score: 145
Period size: 27 Copynumber: 3.4 Consensus size: 28
33269527 AGGAAGCATC
33269537 CTGGTGGCTCTGCCACAAATATCTG-AT
1 CTGGTGGCTCTGCCACAAATATCTGTAT
* *
33269564 CTAGTGGCTCTGCCACAAATATCTGTTT
1 CTGGTGGCTCTGCCACAAATATCTGTAT
33269592 CTGGTGGCTCTGCCAC-AATATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTGTAT
*
33269619 CTGGTGACTCT
1 CTGGTGGCTCT
33269630 ATCACAATAT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 44 0.73
28 16 0.27
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATATCTGTAT
Found at i:33269635 original size:27 final size:27
Alignment explanation
Indices: 33269537--33269641 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
33269527 AGGAAGCATC
33269537 CTGGTGGCTCTGCCACAAATATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
* *
33269564 CTAGTGGCTCTGCCACAAATATCTGTTT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
33269592 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* **
33269619 CTGGTGACTCTATCACAATATCT
1 CTGGTGGCTCTGCCACAATATCT
33269642 ATTATGGCAG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
27 54 0.77
28 16 0.23
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:33269636 original size:55 final size:54
Alignment explanation
Indices: 33269537--33269641 Score: 149
Period size: 55 Copynumber: 1.9 Consensus size: 54
33269527 AGGAAGCATC
* *
33269537 CTGGTGGCTCTGCCACAAATATCTGATCTAGTGGCTCTGCCACAAATATCTGTTT
1 CTGGTGGCTCTGCCACAAATATCTGATCTAGTGACTCTACCAC-AATATCTGTTT
* *
33269592 CTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTATCACAATATCT
1 CTGGTGGCTCTGCCACAAATATCTG-ATCTAGTGACTCTACCACAATATCT
33269642 ATTATGGCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
54 15 0.33
55 30 0.67
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACAAATATCTGATCTAGTGACTCTACCACAATATCTGTTT
Found at i:33275442 original size:27 final size:27
Alignment explanation
Indices: 33275381--33275467 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
33275371 GGAGGAAGCG
*
33275381 TTCTAGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
* *
33275409 TTTTGGTGGCTCTACCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* *
33275436 TTCTGGTGACTCTGTCACAATATCTG-
1 TTCTGGTGGCTCTGCCACAATATCTGT
33275462 TTCTGG
1 TTCTGG
33275468 CAGCCATACT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
26 6 0.12
27 31 0.60
28 15 0.29
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:33294882 original size:16 final size:14
Alignment explanation
Indices: 33294861--33294900 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
33294851 TTGGGTTAAG
33294861 AAAATTATTTAATT
1 AAAATTATTTAATT
*
33294875 GAAAAATTAATTAATT
1 --AAAATTATTTAATT
33294891 AAAATTATTT
1 AAAATTATTT
33294901 TAATGAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.41
16 13 0.59
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
AAAATTATTTAATT
Found at i:33296867 original size:44 final size:43
Alignment explanation
Indices: 33296802--33296927 Score: 130
Period size: 42 Copynumber: 2.9 Consensus size: 43
33296792 CCGATATGTG
* * * *
33296802 TTATCGTGTAAGACCACGTCTGGGACATTGGCATTGATTTGTGAT
1 TTAT-GTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGAT
* * *
33296847 TTATGTGTAATACCATGTCTGGAACATTGGCGTCGTATATGAT
1 TTATGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGAT
* * *
33296890 TT-CGTGTAAGACCCTGTCTGGGACAGTGGCATCG-ATAT
1 TTATGTGTAAGACCATGTCTGGGACATTGGCATCGTATAT
33296928 TTGGTTACAT
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
41 4 0.06
42 26 0.38
43 8 0.12
44 26 0.38
45 4 0.06
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (43 bp):
TTATGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGAT
Found at i:33300967 original size:5 final size:5
Alignment explanation
Indices: 33300957--33300981 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
33300947 GCAAAATTGG
33300957 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
33300982 GCCAAAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:33301999 original size:21 final size:22
Alignment explanation
Indices: 33301889--33302009 Score: 69
Period size: 21 Copynumber: 5.9 Consensus size: 22
33301879 TTCGTGTTTA
* *
33301889 CTTTCTGTTTAGCTC-TA-AAG
1 CTTTCTGTTTAACTCTTATGAG
*
33301909 C-TTCTGTTTAACTCATATGAG
1 CTTTCTGTTTAACTCTTATGAG
* * * *
33301930 -TTT-TGTTCAGCTCTTTTGGG
1 CTTTCTGTTTAACTCTTATGAG
* *
33301950 C-TTCAGTTTAACCCTTATG-G
1 CTTTCTGTTTAACTCTTATGAG
* * *
33301970 GTTTCCGTTTAGCTCTTATGAG
1 CTTTCTGTTTAACTCTTATGAG
*
33301992 CTTTC-GTTCAACTCTTAT
1 CTTTCTGTTTAACTCTTAT
33302010 AGGTGTTTAG
Statistics
Matches: 75, Mismatches: 19, Indels: 13
0.70 0.18 0.12
Matches are distributed among these distances:
19 12 0.16
20 18 0.24
21 40 0.53
22 5 0.07
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.46
Consensus pattern (22 bp):
CTTTCTGTTTAACTCTTATGAG
Found at i:33306319 original size:22 final size:22
Alignment explanation
Indices: 33306294--33306347 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
33306284 ACAGCTCAAC
* * *
33306294 GCCATAGACAGGACATCACATA
1 GCCATAAACAGAACAACACATA
33306316 GCCATAAACAGAACAACACATA
1 GCCATAAACAGAACAACACATA
*
33306338 GCCGTAAACA
1 GCCATAAACA
33306348 TCGCAGCAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.46, C:0.28, G:0.15, T:0.11
Consensus pattern (22 bp):
GCCATAAACAGAACAACACATA
Found at i:33307123 original size:27 final size:27
Alignment explanation
Indices: 33307091--33307439 Score: 228
Period size: 27 Copynumber: 13.0 Consensus size: 27
33307081 TTGGTAAATC
*
33307091 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * * * *
33307118 TGCAAACCAATGGTAGTTCTGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
** * * *
33307145 TTGAAAGTCAAAGGTATTTCTGTAATAT
1 TACAAA-TCAAGGGTATTTCAGTAATTT
**
33307173 TGTAAATCAAGGGTATTTCTA-TAATTT
1 TACAAATCAAGGGTATTTC-AGTAATTT
* * * * *
33307200 TCCAAATTAATGGTATTTCGGTAATAT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * * *
33307227 TCCAAATTAGGGGTATTT-GGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
*
33307253 TACAAATTAAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
**
33307280 TACATGTCAAGGGTATTTC-GATAATTT
1 TACAAATCAAGGGTATTTCAG-TAATTT
* * *
33307307 TACAGGAT-GAGGGTATTTCGGTAATTT
1 TACA-AATCAAGGGTATTTCAGTAATTT
* **
33307334 TACAAATCAATGGTATTTTTGGTAATTT
1 TACAAATCAAGGGTA-TTTCAGTAATTT
* **
33307362 TACAAA-CTAGGGGTATTTTGGTAATTT
1 TACAAATC-AAGGGTATTTCAGTAATTT
* *
33307389 TAC-TATCGAGGGTA-TTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
** *
33307414 TGTAAA-CTAAGGGTATTTCAGCAATT
1 TACAAATC-AAGGGTATTTCAGTAATT
33307440 CTACCCTACA
Statistics
Matches: 259, Mismatches: 49, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
25 11 0.04
26 39 0.15
27 164 0.63
28 45 0.17
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCAGTAATTT
Found at i:33307293 original size:107 final size:107
Alignment explanation
Indices: 33307099--33307404 Score: 269
Period size: 107 Copynumber: 2.8 Consensus size: 107
33307089 TCTACAAACC
* * * * * * ** * *
33307099 AAGGGTATTTCAGTAATTTTGCAAACCAATGGTAGTTCT-GTAATTTTTGAAAGTCAAAGGTATT
1 AAGGGTATTTCGGTAATATTACAAATCAAGGGTA-TTTTGGTAATTTTACAAACT-AAGGGTATT
* * * *
33307163 TCTGTAATATTGTA-AATCAAGGGTATTTCTATAATTTTCCA-AATT
64 TCAGTAAT-TT-TACTATCAAGGGTATTTCGATAATTTTACAGAA-T
* * * * *
33307208 AATGGTATTTCGGTAATATTCCAAATTAGGGGTA-TTTGGTAATTTTACAAATTAAGGGTATTTC
1 AAGGGTATTTCGGTAATATTACAAATCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTC
* *
33307272 AGTAATTTTACATGTCAAGGGTATTTCGATAATTTTACAGGAT
66 AGTAATTTTAC-TATCAAGGGTATTTCGATAATTTTACAGAAT
* * * *
33307315 GAGGGTATTTCGGTAATTTTACAAATCAATGGTATTTTTGGTAATTTTACAAACTAGGGGTATTT
1 AAGGGTATTTCGGTAATATTACAAATCAAGGGTA-TTTTGGTAATTTTACAAACTAAGGGTATTT
** *
33307380 TGGTAATTTTACTATCGAGGGTATT
65 CAGTAATTTTACTATCAAGGGTATT
33307405 CAGTAATTTT
Statistics
Matches: 159, Mismatches: 32, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
105 2 0.01
106 2 0.01
107 68 0.43
108 24 0.15
109 63 0.40
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (107 bp):
AAGGGTATTTCGGTAATATTACAAATCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTC
AGTAATTTTACTATCAAGGGTATTTCGATAATTTTACAGAAT
Found at i:33307401 original size:81 final size:80
Alignment explanation
Indices: 33307091--33307439 Score: 221
Period size: 80 Copynumber: 4.3 Consensus size: 80
33307081 TTGGTAAATC
* * * * *
33307091 TACAAACCAAGGGTATTTCAGTAATTTTGCAAAC-CAATGGTAGTTCTG-TAATTTTTGAAAG-T
1 TACAAATCAAGGGTATTTCAGTAATTTTAC-AACTCAAGGGTATTTC-GATAA-TTTT-ACAGAT
* * * *
33307153 CAAAGGTATTTCTGTAATAT
62 -GAGGGTATTTCGGTAATTT
** * * * * * * * * *
33307173 TGTAAATCAAGGGTATTTCTA-TAATTTTCCAAATTAATGGTATTTCGGTAATATTCCAAATTAG
1 TACAAATCAAGGGTATTTC-AGTAATTTTACAACTCAAGGGTATTTCGATAATTTTACAGATGA-
33307237 GGGTATTT-GGTAATTT
64 GGGTATTTCGGTAATTT
* **
33307253 TACAAATTAAGGGTATTTCAGTAATTTTACATGTCAAGGGTATTTCGATAATTTTACAGGATGAG
1 TACAAATCAAGGGTATTTCAGTAATTTTACAACTCAAGGGTATTTCGATAATTTTACA-GATGAG
33307318 GGTATTTCGGTAATTT
65 GGTATTTCGGTAATTT
* ** * * * *
33307334 TACAAATCAATGGTATTTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTAC-TATCG
1 TACAAATCAAGGGTA-TTTCAGTAATTTTAC-AACTCAAGGGTATTTCGATAATTTTACAGAT-G
*
33307397 AGGGTA-TTCAGTAATTT
63 AGGGTATTTCGGTAATTT
** *
33307414 TGTAAA-CTAAGGGTATTTCAGCAATT
1 TACAAATC-AAGGGTATTTCAGTAATT
33307440 CTACCCTACA
Statistics
Matches: 210, Mismatches: 45, Indels: 27
0.74 0.16 0.10
Matches are distributed among these distances:
79 10 0.05
80 83 0.40
81 45 0.21
82 69 0.33
83 3 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (80 bp):
TACAAATCAAGGGTATTTCAGTAATTTTACAACTCAAGGGTATTTCGATAATTTTACAGATGAGG
GTATTTCGGTAATTT
Found at i:33307458 original size:27 final size:27
Alignment explanation
Indices: 33307428--33307503 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
33307418 AACTAAGGGT
*
33307428 ATTTCAGCAATTCTACCCTACAGAGGC
1 ATTTCAGTAATTCTACCCTACAGAGGC
* * * *
33307455 ATTTCAGTAATTCTATCGTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGAGGC
* *
33307482 ATTTCAGTAATACTAGCCTACA
1 ATTTCAGTAATTCTACCCTACA
33307504 AATATGATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGAGGC
Found at i:33309501 original size:11 final size:12
Alignment explanation
Indices: 33309475--33309509 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
33309465 TCAGTTGAGG
33309475 GATTTGAGGAGA
1 GATTTGAGGAGA
33309487 GATTTGAGG-GA
1 GATTTGAGGAGA
*
33309498 GATTTTAGGAGA
1 GATTTGAGGAGA
33309510 AAATCGTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.31, C:0.00, G:0.40, T:0.29
Consensus pattern (12 bp):
GATTTGAGGAGA
Found at i:33316372 original size:40 final size:39
Alignment explanation
Indices: 33316312--33316412 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 39
33316302 TCCGGGCAAA
33316312 TCCCGAAGGCATTTGTGCGAGTTACT-AAATCCAGGCTAAG
1 TCCC-AAGGCATTTGTGCGAGTTACTCAAA-CCAGGCTAAG
* * * *
33316352 TCCCAAAGGCAATTGTGCGAGTTACTCTAACCGGGCTATG
1 TCCC-AAGGCATTTGTGCGAGTTACTCAAACCAGGCTAAG
*
33316392 TCCCAAGGCATTTGAGCGAGT
1 TCCCAAGGCATTTGTGCGAGT
33316413 AGCTATATCC
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
39 15 0.28
40 36 0.68
41 2 0.04
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCCAAGGCATTTGTGCGAGTTACTCAAACCAGGCTAAG
Found at i:33316411 original size:39 final size:40
Alignment explanation
Indices: 33316266--33316412 Score: 129
Period size: 39 Copynumber: 3.7 Consensus size: 40
33316256 ATGATAACCG
* * * * * ** *
33316266 GGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTTCCG
1 GGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAATCCA
* *
33316306 GGC-AAATCCCGAAGGCATTTGTGCGAGTTACTAAATCCA
1 GGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAATCCA
* * *
33316345 GGCTAAGTCCCAAAGGCAATTGTGCGAGTTACTCTAA-CCG
1 GGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-AAATCCA
* *
33316385 GGCTATGTCCC-AAGGCATTTGAGCGAGT
1 GGCTAAGTCCCAAAGGCATTTGTGCGAGT
33316413 AGCTATATCC
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
39 46 0.52
40 41 0.46
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
GGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAATCCA
Found at i:33324427 original size:40 final size:40
Alignment explanation
Indices: 33324328--33324543 Score: 329
Period size: 40 Copynumber: 5.6 Consensus size: 40
33324318 TGGATGATAA
* * * * **
33324328 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
33324368 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
33324407 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
33324447 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
33324487 CCGGGCTAAGT-CCGAAGGCA-TT-TGCGA-TTACT-AA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
33324521 CCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
33324544 GAGCTAACGT
Statistics
Matches: 167, Mismatches: 6, Indels: 10
0.91 0.03 0.05
Matches are distributed among these distances:
34 11 0.07
35 11 0.07
36 6 0.04
37 5 0.03
38 2 0.01
39 42 0.25
40 90 0.54
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:33324502 original size:79 final size:80
Alignment explanation
Indices: 33324328--33324543 Score: 329
Period size: 79 Copynumber: 2.8 Consensus size: 80
33324318 TGGATGATAA
* * * * **
33324328 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTTCCGGGC-AAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
33324392 TGCGAGTTACTAAAT
66 TGCGAGTTACTAAAT
33324407 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
33324472 TGCGAGTTACTAAAT
66 TGCGAGTTACTAAAT
33324487 CCGGGCTAAGT-CCGAAGGCA-TT-TGCGA-TTACT-AA-CCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATT
33324544 GAGCTAACGT
Statistics
Matches: 130, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
74 23 0.18
75 2 0.02
76 5 0.04
77 5 0.04
78 2 0.02
79 49 0.38
80 44 0.34
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAAT
Found at i:33324592 original size:65 final size:60
Alignment explanation
Indices: 33324493--33324612 Score: 170
Period size: 65 Copynumber: 1.9 Consensus size: 60
33324483 AAATCCGGGC
33324493 TAAGTCCGAAGGCATTTGCGATTACTAACCGGGCTAAGTCCCGAAGGCA-TTGAGCTAACG
1 TAAGTCCGAAGGCATTTGCGATTACTAACCGGGCTAAGT-CCGAAGGCATTTGAGCTAACG
*
33324553 TAAGTCCCGAAGGCATTGTGCGAGTTACTCTAACCGGGCTATGTCCGAAGGCATTTGAGC
1 TAAGT-CCGAAGGCATT-TGCGA-TTA--CTAACCGGGCTAAGTCCGAAGGCATTTGAGC
33324613 GAGTAGCTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
60 5 0.09
61 11 0.21
62 5 0.09
63 3 0.06
64 9 0.17
65 20 0.38
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (60 bp):
TAAGTCCGAAGGCATTTGCGATTACTAACCGGGCTAAGTCCGAAGGCATTTGAGCTAACG
Found at i:33327753 original size:2 final size:2
Alignment explanation
Indices: 33327746--33327788 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
33327736 GGAAGCATGA
*
33327746 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
33327788 A
1 A
33327789 CTGTTGGGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:33330054 original size:27 final size:27
Alignment explanation
Indices: 33330024--33330607 Score: 288
Period size: 27 Copynumber: 21.6 Consensus size: 27
33330014 CCCAGTTGTG
* *
33330024 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
* *
33330051 AAATTACCCAAA-TATCCTCGATTTGTA
1 AAATTA-CCAAATTACCCTCGATTTATA
*
33330078 AAATTACCGAAA-TACCCTC-AGTTTACA
1 AAATTACC-AAATTACCCTCGA-TTTATA
* *
33330105 AAATTACTGAAA-TACCCTCGATTTGTA
1 AAATTAC-CAAATTACCCTCGATTTATA
* * **
33330132 AAATTA-CAGAAATACCCTCGACTTGCA
1 AAATTACCA-AATTACCCTCGATTTATA
* * * *
33330159 AAATTTCCAAAGTACCATCAATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
* **** *
33330186 GAATTACTGTTTTACCCTTGATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
* * ** **
33330213 GAATTACTATTTTACTGTCGATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
**** *
33330240 AAATTACTGTTTTACCCTCGATTTACA
1 AAATTACCAAATTACCCTCGATTTATA
* ***
33330267 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
* **
33330294 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
* ** *
33330321 GAATTACCATTTTACCCTCAATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
* * ** *
33330348 GAATTATCATTTTACCCTCGATTTACA
1 AAATTACCAAATTACCCTCGATTTATA
* ** *
33330375 AAATTATCATTTTACCCTCGATTTACA
1 AAATTACCAAATTACCCTCGATTTATA
* ***
33330402 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
* * * * * *
33330429 AATTTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAATTACCCTCGATTTATA
* *
33330456 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACCAAATTACCCTCGATTTA-TA
* * * *
33330483 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAATTACCCTC-GATTTATA
* * *
33330510 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAATTACCCTC-GATTTATA
* * * *
33330537 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAATTACCCTC-GATTTATA
* ** *
33330564 AAATTACCAAAATACCC-CTGGCTTGTA
1 AAATTACCAAATTACCCTC-GATTTATA
*
33330591 AAATTACCAAAATACCC
1 AAATTACCAAATTACCC
33330608 CTGATTTGTG
Statistics
Matches: 471, Mismatches: 75, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.00
26 8 0.02
27 453 0.96
28 9 0.02
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (27 bp):
AAATTACCAAATTACCCTCGATTTATA
Found at i:33330134 original size:81 final size:81
Alignment explanation
Indices: 33329998--33330194 Score: 195
Period size: 81 Copynumber: 2.4 Consensus size: 81
33329988 TTAGTTTACC
* * * * *
33329998 AAATTACTGAAATACCCCCAGTTGT-GAAATTAC-CAAAGTACCCCCGATTTATAAAATTACCCA
1 AAATTACCGAAATACCCTCAGTT-TAAAAATTACTGAAAGTACCCCCGATTTATAAAATTACACA
* * *
33330061 AATATCCTCGATTTGTA
65 AATACCCTCGACTTGCA
* * *
33330078 AAATTACCGAAATACCCTCAGTTTACAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACAGA
1 AAATTACCGAAATACCCTCAGTTTA-AAAATTACTGAAAGTACCCCCGATTTATAAAATTACACA
33330142 AATACCCTCGACTTGCA
65 AATACCCTCGACTTGCA
* * * *
33330159 AAATTTCC-AAAGTACCATCAATTTATAGAATTACTG
1 AAATTACCGAAA-TACCCTCAGTTTA-AAAATTACTG
33330195 TTTTACCCTT
Statistics
Matches: 97, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.01
80 24 0.25
81 69 0.71
82 3 0.03
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (81 bp):
AAATTACCGAAATACCCTCAGTTTAAAAATTACTGAAAGTACCCCCGATTTATAAAATTACACAA
ATACCCTCGACTTGCA
Found at i:33330243 original size:81 final size:81
Alignment explanation
Indices: 33330171--33330432 Score: 323
Period size: 81 Copynumber: 3.2 Consensus size: 81
33330161 ATTTCCAAAG
* * **
33330171 TACCATCAATTTATAGAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACTGTCGATT
1 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
**
33330236 TATAAAATTACTGTTT
66 TATAAAATTACCATTT
* * * *
33330252 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
*
33330317 TATAGAATTACCATTT
66 TATAAAATTACCATTT
* * *
33330333 TACCCTCAATTTATAGAATTA-TCATTTTACCCTCGATTTACAAAATTA-TCATTTTACCCTCGA
1 TACCCTCAATTTATAGAATTACT-GTTTTACCCTCGATTTATAGAATTACT-ATTTTACCCTCGA
* * *
33330396 TTTACAGAATTACCGTTT
64 TTTATAAAATTACCATTT
*
33330414 TACCCTCGATTTATA-AATT
1 TACCCTCAATTTATAGAATT
33330433 TACTAAAATA
Statistics
Matches: 158, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
80 4 0.03
81 154 0.97
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
TATAAAATTACCATTT
Found at i:33330445 original size:81 final size:80
Alignment explanation
Indices: 33330179--33330462 Score: 320
Period size: 81 Copynumber: 3.5 Consensus size: 80
33330169 AGTACCATCA
* * * * ** *
33330179 ATTTATAGAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACTGTCGATTTATAAAAT
1 ATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTAC-ATTTTACCCTCGATTTATAGAAT
*
33330244 TACTGTTTTACCCTCG
65 TACCGTTTTACCCTCG
* ** * *
33330260 ATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
1 ATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTA-CATTTTACCCTCGATTTATAGAAT
* *
33330325 TACCATTTTACCCTCA
65 TACCGTTTTACCCTCG
*
33330341 ATTTATAGAATTA-TCATTTTACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAGAA
1 ATTTATAGAATTACT-ATTTTACCCTCGATTTACAAAATTA-CATTTTACCCTCGATTTATAGAA
33330405 TTACCGTTTTACCCTCG
64 TTACCGTTTTACCCTCG
*** * *
33330422 ATTTATA-AATTTACTAAAATACCCTTGGTTTACAAAATTAC
1 ATTTATAGAA-TTACTATTTTACCCTCGATTTACAAAATTAC
33330463 CAAAATACCC
Statistics
Matches: 176, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
80 3 0.02
81 171 0.97
82 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (80 bp):
ATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACATTTTACCCTCGATTTATAGAATT
ACCGTTTTACCCTCG
Found at i:33330647 original size:81 final size:81
Alignment explanation
Indices: 33330481--33330648 Score: 232
Period size: 81 Copynumber: 2.1 Consensus size: 81
33330471 CCTCGATCAG
* * * *
33330481 TAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTA
1 TAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATGACTA
*
33330546 AAATACCCCTGGTTTG
66 AAATACCCCTGGTTTA
*
33330562 TAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATGA-TC
1 TAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATGACT-
* *
33330626 GAAATA-CTCTCGGTTTA
65 AAAATACCCCT-GGTTTA
33330643 TAAAAT
1 TAAAAT
33330649 ATCGAAATAA
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 4 0.05
81 73 0.95
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATGACTA
AAATACCCCTGGTTTA
Found at i:33330867 original size:27 final size:27
Alignment explanation
Indices: 33330651--33330867 Score: 272
Period size: 27 Copynumber: 8.0 Consensus size: 27
33330641 TATAAAATAT
* * * *
33330651 CGAAATAACCTTGTAGGGTAGAATAAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
33330678 CGAAATACCCCTGTAGAGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
33330705 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
33330732 CGAAATACCCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
33330759 TGAAATACCCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
33330786 TGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
33330813 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
33330840 CGAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
33330867 C
1 C
33330868 ATTTTGCCCC
Statistics
Matches: 168, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 168 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:33331553 original size:26 final size:27
Alignment explanation
Indices: 33331517--33331590 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
33331507 ATTCTGTTAA
* * *
33331517 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATATG
33331543 GTGGCTCTGCCACAATATCTGTATATG
1 GTGGCTCTGCCACAATATCTGTATATG
* *
33331570 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
33331591 ATAACTGAGC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 20 0.48
27 22 0.52
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATATG
Found at i:33331773 original size:31 final size:32
Alignment explanation
Indices: 33331728--33331794 Score: 118
Period size: 31 Copynumber: 2.1 Consensus size: 32
33331718 TGCATTCACT
33331728 TTCTGATTTTTGATTCTATTACCTGATACTGA
1 TTCTGATTTTTGATTCTATTACCTGATACTGA
*
33331760 TTCTGA-TTTTGATTCTGTTACCTGATACTGA
1 TTCTGATTTTTGATTCTATTACCTGATACTGA
33331791 TTCT
1 TTCT
33331795 TATTCTAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 28 0.82
32 6 0.18
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.51
Consensus pattern (32 bp):
TTCTGATTTTTGATTCTATTACCTGATACTGA
Found at i:33331806 original size:31 final size:31
Alignment explanation
Indices: 33331740--33331830 Score: 105
Period size: 31 Copynumber: 3.0 Consensus size: 31
33331730 CTGATTTTTG
* * * *
33331740 ATTCTATTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTTATTCTA
33331771 ATTCTGTTACCTGATACTGATTCTTATTCTA
1 ATTCTGTTACCTGATACTGATTCTTATTCTA
* *
33331802 ATTCTAGTT--CTGATAATGTTTCTTATTCT
1 ATTCT-GTTACCTGATACTGATTCTTATTCT
33331831 GTAATGGGTT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
30 18 0.34
31 32 0.60
32 3 0.06
ACGTcount: A:0.22, C:0.16, G:0.11, T:0.51
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTTATTCTA
Found at i:33336419 original size:44 final size:44
Alignment explanation
Indices: 33336356--33336440 Score: 170
Period size: 44 Copynumber: 1.9 Consensus size: 44
33336346 GACTAGAAAT
33336356 GCATGGCCATGCTTGAATAAGGTGATATGAGATATCACACTAAG
1 GCATGGCCATGCTTGAATAAGGTGATATGAGATATCACACTAAG
33336400 GCATGGCCATGCTTGAATAAGGTGATATGAGATATCACACT
1 GCATGGCCATGCTTGAATAAGGTGATATGAGATATCACACT
33336441 TACTTGTTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (44 bp):
GCATGGCCATGCTTGAATAAGGTGATATGAGATATCACACTAAG
Found at i:33338017 original size:144 final size:143
Alignment explanation
Indices: 33337755--33338118 Score: 412
Period size: 144 Copynumber: 2.5 Consensus size: 143
33337745 TGTGCGCTAG
* * *
33337755 TGTAAGACCATGTCTGGAACATGGCATCGGCCACTT--TATGTGTGCCAGTGTAACACCATGTTT
1 TGTAAGACCATGTCTGG-ACATGGCATCGG-CA-TTGATATGTGAGCTAGTGTAAGACCATGTTT
* *
33337818 GGGACATGGCATCGGCCACGATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACA
63 GGGACATGGCATCGGCCACGATATGAAAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACA
* * *
33337883 ATGTTG-TGAGCGCCAA
128 ATG-AGACGAGAGCCAA
* * *
33337899 TGTAAGACCATGTCTAGGACATGGCATCGGTATTGATATGTGCGCTAGTGTAAGACCATGTATGG
1 TGTAAGACCATGTCT-GGACATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTTTGG
* * ** *
33337964 GACATGGCATCGGCCA-TATTATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTAT
65 GACATGGCATCGGCCACGA-TATGAAAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACAA
* *
33338028 TGAGACGAGAGCTAG
129 TGAGACGAGAGCCAA
* * * * * *
33338043 TGTAAGACCATGTCTGGGATATGGCATCGGCCTCGACATGTGAGATAGTGCAAGACCATGTTTGG
1 TGTAAGACCATGTCT-GGACATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTTTGG
*
33338108 AACATGGCATC
65 GACATGGCATC
33338119 AGCAATTCAC
Statistics
Matches: 187, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
142 2 0.01
143 3 0.02
144 180 0.96
145 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (143 bp):
TGTAAGACCATGTCTGGACATGGCATCGGCATTGATATGTGAGCTAGTGTAAGACCATGTTTGGG
ACATGGCATCGGCCACGATATGAAAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACAATG
AGACGAGAGCCAA
Found at i:33338072 original size:96 final size:95
Alignment explanation
Indices: 33337740--33338074 Score: 402
Period size: 96 Copynumber: 3.5 Consensus size: 95
33337730 GACATTTGGG
* * * *
33337740 TGATATGTGCGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCACTTTATGTGTGCCAGTG
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCA-TTTATGAGAGCCAGTG
* * *
33337805 TAACACCATGTTTGGGACATGGCATCGGCCA-
65 TAAGACCATGTCTGGGACATGGCATCGG-TAT
* * * * * * *
33337836 CGATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACAATGTTGTGAGCGCCAATG
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCAT-TTATGAGAGCCAGTG
*
33337901 TAAGACCATGTCTAGGACATGGCATCGGTAT
65 TAAGACCATGTCTGGGACATGGCATCGGTAT
* * * * * *
33337932 TGATATGTGCGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCCATATTATGAAAGCTAGTG
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCAT-TTATGAGAGCCAGTG
33337997 TAAGACCATGTCTGGGACATGGCATCGGTAT
65 TAAGACCATGTCTGGGACATGGCATCGGTAT
* * * *
33338028 TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCC
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCC
33338075 TCGACATGTG
Statistics
Matches: 203, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
95 2 0.01
96 201 0.99
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (95 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCATTTATGAGAGCCAGTGT
AAGACCATGTCTGGGACATGGCATCGGTAT
Found at i:33338092 original size:48 final size:48
Alignment explanation
Indices: 33337741--33338118 Score: 343
Period size: 48 Copynumber: 7.9 Consensus size: 48
33337731 ACATTTGGGT
* * *
33337741 GATATGTGCGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCAC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
** * * * * *
33337789 TTTATGTGTGCCAGTGTAACACCATGTTTGGGACATGGCATCGGCCAC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * *
33337837 GATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACAAT-
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * * ** *
33337885 G-T-TGTGAGCGCCAATGTAAGACCATGTCTAGGACATGGCATCGGTATT
1 GATATGTGA--GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* *
33337933 GATATGTGCGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCCAT-
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TC
** ** *
33337981 -ATTATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATT
1 GA-TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
33338029 GAGACGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * *
33338077 GACATGTGAGATAGTGCAAGACCATGTTTGGAACATGGCATC
1 GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
33338119 AGCAATTCAC
Statistics
Matches: 267, Mismatches: 53, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
46 4 0.01
47 5 0.02
48 251 0.94
49 3 0.01
50 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
GATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:33342148 original size:42 final size:42
Alignment explanation
Indices: 33342101--33342192 Score: 184
Period size: 42 Copynumber: 2.2 Consensus size: 42
33342091 ATGCCCTTAG
33342101 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
33342143 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
33342185 GCCCATTT
1 GCCCATTT
33342193 GGGGAGACTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:33342372 original size:25 final size:25
Alignment explanation
Indices: 33342338--33342407 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
33342328 CTCTTTTAAT
*
33342338 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
33342363 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
33342388 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
33342408 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:33343247 original size:27 final size:26
Alignment explanation
Indices: 33343217--33343283 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
33343207 GGGCATATTC
33343217 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACC-TACAAGGGCT-TTACG
* *
33343244 GTCACTTTAACCTACAGGGGCTTTACG
1 GTCA-TTTTACCTACAAGGGCTTTACG
*
33343271 GTCTTTTTACCTA
1 GTCATTTTACCTA
33343284 TTAGGGGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 8 0.24
27 19 0.56
28 7 0.21
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGCTTTACG
Found at i:33343365 original size:27 final size:27
Alignment explanation
Indices: 33343339--33343488 Score: 156
Period size: 27 Copynumber: 5.4 Consensus size: 27
33343329 ATCTACAAAC
* * *
33343339 CAAGGGTATTTCAACAATTTTGTAAAC
1 CAAGGGTATTTCTATAATTTTGTAAAT
* * *
33343366 CAATGGTATTTTTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTATAATTTTGT-AAA-T
*
33343395 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCTATAATTTTGTAAAT
* *
33343422 CAATGGTATTTCTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTATAATTTTGT-AAA-T
*
33343451 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCTATAATTTTGTAAAT
* *
33343478 TAGGGGTATTT
1 CAAGGGTATTT
33343489 TGGTAATTTT
Statistics
Matches: 101, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 49 0.49
28 12 0.12
29 40 0.40
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45
Consensus pattern (27 bp):
CAAGGGTATTTCTATAATTTTGTAAAT
Found at i:33343403 original size:29 final size:29
Alignment explanation
Indices: 33343339--33343476 Score: 158
Period size: 29 Copynumber: 4.9 Consensus size: 29
33343329 ATCTACAAAC
* * *
33343339 CAAGGGTATTTCAACAATTTTGT-AAA-C
1 CAAGGGTATTTCTATAATTTTGTAAAAGT
* * *
33343366 CAATGGTATTTTTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTATAATTTTGTAAAAGT
*
33343395 CAAGGGTATTTCTGTAATTTTGT-AAA-T
1 CAAGGGTATTTCTATAATTTTGTAAAAGT
* *
33343422 CAATGGTATTTCTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTATAATTTTGTAAAAGT
*
33343451 CAAGGGTATTTCTGTAATTTTGTAAA
1 CAAGGGTATTTCTATAATTTTGTAAA
33343477 TTAGGGGTAT
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
27 39 0.43
28 9 0.10
29 43 0.47
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.44
Consensus pattern (29 bp):
CAAGGGTATTTCTATAATTTTGTAAAAGT
Found at i:33343477 original size:56 final size:56
Alignment explanation
Indices: 33343339--33343477 Score: 233
Period size: 56 Copynumber: 2.5 Consensus size: 56
33343329 ATCTACAAAC
*** * *
33343339 CAAGGGTATTTCAACAATTTTGTAAACCAATGGTATTTTTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTGTAATTTTGTAAATCAATGGTATTTCTATAATTTTTTAAAAGT
33343395 CAAGGGTATTTCTGTAATTTTGTAAATCAATGGTATTTCTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTGTAATTTTGTAAATCAATGGTATTTCTATAATTTTTTAAAAGT
33343451 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTGTAAAT
33343478 TAGGGGTATT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 78 1.00
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (56 bp):
CAAGGGTATTTCTGTAATTTTGTAAATCAATGGTATTTCTATAATTTTTTAAAAGT
Found at i:33343494 original size:27 final size:27
Alignment explanation
Indices: 33343454--33343577 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
33343444 TAAAAGTCAA
** *
33343454 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
33343481 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
33343507 AGGGTATTTCGGTAATTTCACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* * *
33343535 TGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
33343562 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
33343578 CTATCCTGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.04
27 77 0.94
28 2 0.02
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:33343496 original size:56 final size:55
Alignment explanation
Indices: 33343339--33343498 Score: 212
Period size: 56 Copynumber: 2.9 Consensus size: 55
33343329 ATCTACAAAC
*** * *
33343339 CAAGGGTATTTCAACAATTTTGTAAACCAATGGTATTTTTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTGTAATTTTGTAAATCAAGGGTA-TTTTATAATTTTTTAAAAGT
*
33343395 CAAGGGTATTTCTGTAATTTTGTAAATCAATGGTATTTCTATAATTTTTTAAAAGT
1 CAAGGGTATTTCTGTAATTTTGTAAATCAAGGGTATTT-TATAATTTTTTAAAAGT
* * *
33343451 CAAGGGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTT
1 CAAGGGTATTTCTGTAATTTTGTAAATCAAGGGTATTTT-ATAATTTT
33343499 ACAAATTGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
55 4 0.04
56 90 0.96
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.46
Consensus pattern (55 bp):
CAAGGGTATTTCTGTAATTTTGTAAATCAAGGGTATTTTATAATTTTTTAAAAGT
Found at i:33343684 original size:54 final size:53
Alignment explanation
Indices: 33343609--33343792 Score: 251
Period size: 54 Copynumber: 3.4 Consensus size: 53
33343599 GTAATTTGAC
* * *
33343609 AATCGAGGGTAAAACGGTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTAAATC-AAGGTAAAACGGTAATTCTATA
* * * *
33343663 AATCGAGCGTAAAATGGTAATTCTGTAAATCGAGCGTAAAACAGTAATTCCATA
1 AATCGAGGGTAAAATGGTAATTCTGTAAATCAAG-GTAAAACGGTAATTCTATA
* *
33343717 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTAAATC-AAGGTAAAACGGTAATTCTATA
*
33343771 AATCGAAGGTAAAATGGTAATT
1 AATCGAGGGTAAAATGGTAATT
33343793 TTACAAATTG
Statistics
Matches: 114, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 2 0.02
54 111 0.97
55 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (53 bp):
AATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGTAAAACGGTAATTCTATA
Found at i:33343791 original size:81 final size:81
Alignment explanation
Indices: 33343609--33343792 Score: 253
Period size: 81 Copynumber: 2.3 Consensus size: 81
33343599 GTAATTTGAC
* ** *
33343609 AATCGAGGGTAAAACGGTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTGTAAATCGAGCGTA
1 AATCGAAGGTAAAACGGTAATTCCATAAATCAAAGGTAAAATGGTAATTCTATAAATCGAGCGTA
* *
33343674 AAATGGTAATTCTGTA
66 AAACGGTAATTCTATA
* * * *
33343690 AATCG-AGCGTAAAACAGTAATTCCATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGT
1 AATCGAAG-GTAAAACGGTAATTCCATAAATCAAAGGTAAAATGGTAATTCTATAAATCGAGCGT
33343754 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTATA
*
33343771 AATCGAAGGTAAAATGGTAATT
1 AATCGAAGGTAAAACGGTAATT
33343793 TTACAAATTG
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 1 0.01
81 86 0.97
82 2 0.02
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (81 bp):
AATCGAAGGTAAAACGGTAATTCCATAAATCAAAGGTAAAATGGTAATTCTATAAATCGAGCGTA
AAACGGTAATTCTATA
Found at i:33343800 original size:27 final size:27
Alignment explanation
Indices: 33343609--33343792 Score: 228
Period size: 27 Copynumber: 6.8 Consensus size: 27
33343599 GTAATTTGAC
* * *
33343609 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAAGGTAAAATGGTAATTCTATA
* *
33343636 AATCAAAGGTAAAATGGTAATTCTGTA
1 AATCGAAGGTAAAATGGTAATTCTATA
*
33343663 AATCG-AGCGTAAAATGGTAATTCTGTA
1 AATCGAAG-GTAAAATGGTAATTCTATA
** *
33343690 AATCG-AGCGTAAAACAGTAATTCCATA
1 AATCGAAG-GTAAAATGGTAATTCTATA
*
33343717 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAAGGTAAAATGGTAATTCTATA
* *
33343744 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAAGGTAAAATGGTAATTCTATA
33343771 AATCGAAGGTAAAATGGTAATT
1 AATCGAAGGTAAAATGGTAATT
33343793 TTACAAATTG
Statistics
Matches: 140, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 137 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAAGGTAAAATGGTAATTCTATA
Found at i:33343819 original size:54 final size:54
Alignment explanation
Indices: 33343653--33343808 Score: 161
Period size: 54 Copynumber: 2.9 Consensus size: 54
33343643 GGTAAAATGG
* ** * * *
33343653 TAATTCTGTAAATCG-AGCGTAAAATGGTAATTCTGTAAATCGAGCGTAAAACAG
1 TAATTCTATAAATCGAAG-GTAAAATGGTAATTCTACAAATCGAGAGCAAAACAA
* * * * * **
33343707 TAATTCCATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTATAAATCGAAGGTAAAATGGTAATTCTACAAATCGAGAGCAAAACAA
* *
33343761 TAATTCTATAAATCGAAGGTAAAATGGTAATTTTACAAATTGAGAGCA
1 TAATTCTATAAATCGAAGGTAAAATGGTAATTCTACAAATCGAGAGCA
33343809 TTTCAATAAT
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 87 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (54 bp):
TAATTCTATAAATCGAAGGTAAAATGGTAATTCTACAAATCGAGAGCAAAACAA
Found at i:33351663 original size:55 final size:55
Alignment explanation
Indices: 33351551--33351669 Score: 150
Period size: 55 Copynumber: 2.2 Consensus size: 55
33351541 GTAGGCCCAT
* *
33351551 GCCTGTGTTAATCTGACAGGTTCGCCCACGGTTGCTCGGCATGGGCGTGTCGCAC
1 GCCTGTGTTAATCTGACAGGTTCGCCCACGGTTGCTAGGCATGGGCGTCTCGCAC
* * * * *
33351606 GCCTGTGTTAATTTGACAGGTTCGGCCACGGTTTCTAGGCACT-GGCGTCTTGGAC
1 GCCTGTGTTAATCTGACAGGTTCGCCCACGGTTGCTAGGCA-TGGGCGTCTCGCAC
*
33351661 GCCCGTGTT
1 GCCTGTGTT
33351670 GTTTTGGCAA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 54 0.98
56 1 0.02
ACGTcount: A:0.13, C:0.27, G:0.32, T:0.29
Consensus pattern (55 bp):
GCCTGTGTTAATCTGACAGGTTCGCCCACGGTTGCTAGGCATGGGCGTCTCGCAC
Found at i:33363178 original size:10 final size:9
Alignment explanation
Indices: 33363093--33363256 Score: 73
Period size: 9 Copynumber: 16.8 Consensus size: 9
33363083 TAATATAAAC
33363093 TTAT-AAAA
1 TTATAAAAA
*
33363101 TATAAAAAAA
1 T-TATAAAAA
*
33363111 TCATAAAAA
1 TTATAAAAA
33363120 TTATAAAAA
1 TTATAAAAA
33363129 TTATAAAAGGAA
1 TTAT-AAA--AA
* *
33363141 TCATACAAAC
1 TTATA-AAAA
*
33363151 TTATAAATA
1 TTATAAAAA
*
33363160 TTCTAAAAA
1 TTATAAAAA
33363169 TTTATAAAAAAAA
1 -TTAT---AAAAA
33363182 TCTA-ATAAAA
1 T-TATA-AAAA
*
33363192 TT-TAATAAT
1 TTATAA-AAA
33363201 TTATAAAAAA
1 TTAT-AAAAA
33363211 TTATAAAAA
1 TTATAAAAA
**
33363220 GCATAAAAA
1 TTATAAAAA
*
33363229 CTTATAAATA
1 -TTATAAAAA
33363239 TTATACAAAA
1 TTATA-AAAA
33363249 TTTATAAA
1 -TTATAAA
33363257 CTATCTAACA
Statistics
Matches: 117, Mismatches: 20, Indels: 36
0.68 0.12 0.21
Matches are distributed among these distances:
8 2 0.02
9 53 0.45
10 39 0.33
11 8 0.07
12 8 0.07
13 7 0.06
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:33363938 original size:9 final size:9
Alignment explanation
Indices: 33363926--33364108 Score: 65
Period size: 9 Copynumber: 19.4 Consensus size: 9
33363916 TTTAAATGAT
33363926 TTTTTATAA
1 TTTTTATAA
33363935 TTTTTAT-A
1 TTTTTATAA
33363943 TTATTTATAA
1 TT-TTTATAA
33363953 GTTTTTATGAA
1 -TTTTTAT-AA
33363964 -TTTTATAAA
1 TTTTTAT-AA
33363973 TTTTTATAAAA
1 TTTTTAT--AA
* *
33363984 TTTTAAAAA
1 TTTTTATAA
* *
33363993 TTTTAAAAAA
1 TTTT-TATAA
*
33364003 TGTTTTATTCA
1 T-TTTTA-TAA
33364014 -TTTTAT-A
1 TTTTTATAA
*
33364021 TTTGT-TAA
1 TTTTTATAA
*
33364029 TTTATTA-GA
1 TTT-TTATAA
33364038 TTTATTA-AA
1 TTT-TTATAA
*
33364047 ATTTTATAA
1 TTTTTATAA
*
33364056 TATTTATAA
1 TTTTTATAA
* **
33364065 GCTTTTATGGTT
1 -TTTTTAT--AA
33364077 TTTTTATAA
1 TTTTTATAA
33364086 TTTTTATAA
1 TTTTTATAA
*
33364095 GTTTATATAA
1 -TTTTTATAA
33364105 TTTT
1 TTTT
33364109 AATGTTTTTA
Statistics
Matches: 134, Mismatches: 22, Indels: 36
0.70 0.11 0.19
Matches are distributed among these distances:
7 2 0.01
8 14 0.10
9 64 0.48
10 32 0.24
11 22 0.16
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:33363959 original size:19 final size:17
Alignment explanation
Indices: 33363927--33363981 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 17
33363917 TTAAATGATT
*
33363927 TTTTATAATTTTTATAT
1 TTTTATAATTTTTATAA
33363944 TATTTATAAGTTTTTATGAA
1 T-TTTATAA-TTTTTAT-AA
33363964 TTTTATAAATTTTTATAA
1 TTTTAT-AATTTTTATAA
33363982 AATTTTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
17 1 0.03
18 9 0.27
19 19 0.58
20 4 0.12
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (17 bp):
TTTTATAATTTTTATAA
Found at i:33363987 original size:29 final size:29
Alignment explanation
Indices: 33363927--33363997 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
33363917 TTAAATGATT
* **
33363927 TTTTATAATTTT-TATATTATTTATAAGT
1 TTTTATAATTTTATAAATTATTTATAAAA
33363955 TTTTATGAATTTTATAAATT-TTTATAAAA
1 TTTTAT-AATTTTATAAATTATTTATAAAA
*
33363984 TTTTAAAAATTTTA
1 TTTT-ATAATTTTA
33363998 AAAAATGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 6 0.17
29 24 0.67
30 6 0.17
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (29 bp):
TTTTATAATTTTATAAATTATTTATAAAA
Found at i:33363988 original size:10 final size:10
Alignment explanation
Indices: 33363962--33364003 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
33363952 AGTTTTTATG
33363962 AATTTTATAA
1 AATTTTATAA
*
33363972 ATTTTTATAA
1 AATTTTATAA
33363982 AATTTTA-AA
1 AATTTTATAA
*
33363991 AATTTTAAAA
1 AATTTTATAA
33364001 AAT
1 AAT
33364004 GTTTTATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 9 0.31
10 20 0.69
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
AATTTTATAA
Found at i:33364696 original size:31 final size:30
Alignment explanation
Indices: 33364644--33364701 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
33364634 TGAATTTGAT
33364644 CAAATTTAGTCCCTACTCTTTTTGAAATGGG
1 CAAATTTAGTCCCTACTCTTTTT-AAATGGG
* *
33364675 CAAATTTAGTTCCT-GTACTTTTTAAAT
1 CAAATTTAGTCCCTACT-CTTTTTAAAT
33364702 TTTGAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.21
31 19 0.79
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (30 bp):
CAAATTTAGTCCCTACTCTTTTTAAATGGG
Found at i:33367104 original size:12 final size:11
Alignment explanation
Indices: 33367082--33367122 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
33367072 AAAATTACAA
33367082 AAAATAATTTC
1 AAAATAATTTC
33367093 AAAATAATTTTC
1 AAAATAA-TTTC
33367105 -AAA-AA-TTC
1 AAAATAATTTC
33367113 AAAATAATTT
1 AAAATAATTT
33367123 TTAAAATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
8 3 0.12
9 3 0.12
10 4 0.15
11 12 0.46
12 4 0.15
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (11 bp):
AAAATAATTTC
Found at i:33367130 original size:19 final size:20
Alignment explanation
Indices: 33367090--33367137 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
33367080 AAAAAATAAT
33367090 TTCAAAATAATTTTCAAAAA
1 TTCAAAATAATTTTCAAAAA
*
33367110 TTCAAAATAATTTT-TAAAA
1 TTCAAAATAATTTTCAAAAA
33367129 TTCAAAATA
1 TTCAAAATA
33367138 TTTATGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (20 bp):
TTCAAAATAATTTTCAAAAA
Found at i:33367147 original size:19 final size:19
Alignment explanation
Indices: 33367090--33367149 Score: 77
Period size: 19 Copynumber: 3.1 Consensus size: 19
33367080 AAAAAATAAT
*
33367090 TTCAAAATAATTTTCAAAAA
1 TTCAAAATAATTTT-GAAAA
*
33367110 TTCAAAATAATTTTTAAAA
1 TTCAAAATAATTTTGAAAA
33367129 TTCAAAAT-ATTTATGAAAA
1 TTCAAAATAATTT-TGAAAA
33367148 TT
1 TT
33367150 TCGATAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 4 0.11
19 19 0.51
20 14 0.38
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (19 bp):
TTCAAAATAATTTTGAAAA
Found at i:33369170 original size:27 final size:24
Alignment explanation
Indices: 33369112--33369184 Score: 92
Period size: 27 Copynumber: 2.9 Consensus size: 24
33369102 TCCTGTTATA
*
33369112 TGGCTCTTCGTGAGCTTCCCGAAT
1 TGGCTCTTTGTGAGCTTCCCGAAT
*
33369136 TGGCTCTTTTTGAGCTTCCCGTTAAAT
1 TGGCTCTTTGTGAGCTTCCCG---AAT
*
33369163 TGGCTCTTTGTGAGCTTTCCGA
1 TGGCTCTTTGTGAGCTTCCCGA
33369185 TAGTGCTCGC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
24 20 0.48
27 22 0.52
ACGTcount: A:0.12, C:0.25, G:0.23, T:0.40
Consensus pattern (24 bp):
TGGCTCTTTGTGAGCTTCCCGAAT
Found at i:33369391 original size:24 final size:24
Alignment explanation
Indices: 33369345--33369407 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
33369335 ATAGCCCGAA
*
33369345 TAAGCTTCCCGATA-GGCTCTTTG
1 TAAGCTTCCTGATATGGCTCTTTG
*
33369368 TGAGCTTCCTGATATGGCTCTTTG
1 TAAGCTTCCTGATATGGCTCTTTG
* *
33369392 TAAGCTACCTGTTATG
1 TAAGCTTCCTGATATG
33369408 TAACACCCCT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 12 0.35
24 22 0.65
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (24 bp):
TAAGCTTCCTGATATGGCTCTTTG
Found at i:33370893 original size:23 final size:23
Alignment explanation
Indices: 33370833--33370967 Score: 96
Period size: 23 Copynumber: 5.7 Consensus size: 23
33370823 GTCATGATCG
*
33370833 GTAAGCTCTTCTTGAGCTGATGAACA
1 GTAAGCTC-TATTGAGCTGA--AACA
* * *
33370859 ATATGCTCTATTGAGCTGAAACG
1 GTAAGCTCTATTGAGCTGAAACA
*
33370882 GTAAGCTCTATTGAGTTG-AACA
1 GTAAGCTCTATTGAGCTGAAACA
* **
33370904 GTAAGCTC-ATACGAGCTGAAATG
1 GTAAGCTCTAT-TGAGCTGAAACA
* * *
33370927 GTAAGCTCCAATGAGCTAAAAACA
1 GTAAGCTCTATTGAGCT-GAAACA
33370951 GTAAGCTCT-TATGAGCT
1 GTAAGCTCTAT-TGAGCT
33370968 AAAATATCAG
Statistics
Matches: 85, Mismatches: 19, Indels: 12
0.73 0.16 0.10
Matches are distributed among these distances:
21 2 0.02
22 16 0.19
23 33 0.39
24 18 0.21
25 10 0.12
26 6 0.07
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:33377409 original size:37 final size:37
Alignment explanation
Indices: 33377368--33377439 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
33377358 CTGCACTGGA
*
33377368 GTAAGGAACCAATGACATATAATTTTCTTTATCTTTG
1 GTAAGGAACCAATGACATATAATTTTCGTTATCTTTG
*
33377405 GTAAGGAACCGATGACATATAATTTTCGTTATCTT
1 GTAAGGAACCAATGACATATAATTTTCGTTATCTT
33377440 CGATTTTTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (37 bp):
GTAAGGAACCAATGACATATAATTTTCGTTATCTTTG
Found at i:33382282 original size:30 final size:30
Alignment explanation
Indices: 33382248--33382308 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
33382238 TCCTTAACTC
33382248 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
33382278 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
33382308 A
1 A
33382309 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:33389619 original size:39 final size:39
Alignment explanation
Indices: 33389570--33390008 Score: 648
Period size: 39 Copynumber: 11.5 Consensus size: 39
33389560 CAAAGCCTGT
*
33389570 GGGACTTTAGCCTGGATATAACACCAGCACGAATGCCTTC
1 GGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTTC
*
33389610 GGGACTTAGCCCGGATATAACACCAGCATGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
33389649 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
** * *
33389688 GGGACTTAGCTTGGATATAATACCAGCATGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
33389727 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
* *
33389766 GGGAATTAGCCCGGATATAATACCAG--C--A------C
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
* *
33389795 -GGACTTAGCCCGGATATAACACTAGTACGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
**
33389833 GGGACTTAGCCCTTATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
* *
33389872 GGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
*
33389911 GGGTCTTAGCCCGGATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
33389950 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
*
33389989 GGGACTTTGCCCGGATATAA
1 GGGACTTAGCCCGGATATAA
33390009 TTCTCCATTA
Statistics
Matches: 359, Mismatches: 29, Indels: 23
0.87 0.07 0.06
Matches are distributed among these distances:
28 22 0.06
29 1 0.00
30 1 0.00
32 1 0.00
35 1 0.00
37 1 0.00
38 1 0.00
39 326 0.91
40 5 0.01
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (39 bp):
GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
Found at i:33389913 original size:145 final size:144
Alignment explanation
Indices: 33389650--33389995 Score: 478
Period size: 145 Copynumber: 2.3 Consensus size: 144
33389640 AATGCCTTCG
*
33389650 GGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCTTGGATATAATACCAGC
1 GGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCTT-GATATAACACCAGC
* *
33389715 ATGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGAATTAGCCCGG
65 ACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGAATTAGCCCGG
*
33389780 ATATAATACCAGCAC
130 ATATAACACCAGCAC
* *
33389795 GGACTTAGCCCGGATATAACACTAGTACGAATGCCTTCGGGACTTAGCCCTT-ATATAACACCAG
1 GGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAG--CTTGATATAACACCAG
* **
33389859 CACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGTCTTAGCCCG
64 CACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGAATTAGCCCG
33389924 GATATAACACCAGCACGAATGCCTTC
129 GATATAACACCAG--C--A------C
33389950 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 -GGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
33389996 TGCCCGGATA
Statistics
Matches: 177, Mismatches: 11, Indels: 15
0.87 0.05 0.07
Matches are distributed among these distances:
145 128 0.72
147 4 0.02
149 1 0.01
155 1 0.01
156 43 0.24
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (144 bp):
GGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCTTGATATAACACCAGCA
CGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGAATTAGCCCGGA
TATAACACCAGCAC
Found at i:33389921 original size:184 final size:184
Alignment explanation
Indices: 33389611--33389979 Score: 630
Period size: 184 Copynumber: 2.0 Consensus size: 184
33389601 AATGCCTTCG
*
33389611 GGACTTAGCCCGGATATAACACCAGCATGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGC
1 GGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGC
** **
33389676 ACGAATGCCTTCGGGACTTAGCTTGGATATAATACCAGCATGAATGCCTTCGGGACTTAGCCCGG
66 ACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGG
*
33389741 ATATAACACCAGCACGAATGCCTTCGGGAATTAGCCCGGATATAATACCAGCAC
131 ATATAACACCAGCACGAATGCCTTCGGGAATTAGCCCGGATATAACACCAGCAC
* * **
33389795 GGACTTAGCCCGGATATAACACTAGTACGAATGCCTTCGGGACTTAGCCCTTATATAACACCAGC
1 GGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGC
*
33389860 ACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGTCTTAGCCCGG
66 ACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGG
*
33389925 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCAC
131 ATATAACACCAGCACGAATGCCTTCGGGAATTAGCCCGGATATAACACCAGCAC
33389979 G
1 G
33389980 AATGCCTTCG
Statistics
Matches: 173, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
184 173 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (184 bp):
GGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGC
ACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAACACCAGCACGAATGCCTTCGGGAATTAGCCCGGATATAACACCAGCAC
Found at i:33389971 original size:223 final size:224
Alignment explanation
Indices: 33389571--33390009 Score: 736
Period size: 223 Copynumber: 2.0 Consensus size: 224
33389561 AAAGCCTGTG
*
33389571 GGACTTTAGCCTGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAG
1 GGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAG
* * **
33389636 CATGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCTTG
66 CACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCG
* *
33389701 GATATAATACCAGCATGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
131 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
33389766 GGGAATTAGCCCGGATATAATACCAGCAC
196 GGGAATTAGCCCGGATATAATACCAGCAC
* * **
33389795 GGAC-TTAGCCCGGATATAACACTAGTACGAATGCCTTCGGGACTTAGCCCTTATATAACACCAG
1 GGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAG
* *
33389859 CACGAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGTCTTAGCCCG
66 CACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCG
33389924 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
131 GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
* *
33389989 GGGACTTTGCCCGGATATAAT
196 GGGAATTAGCCCGGATATAAT
33390010 TCTCCATTAT
Statistics
Matches: 200, Mismatches: 15, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
223 196 0.98
224 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (224 bp):
GGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAG
CACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTTAGCCCG
GATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
GGGAATTAGCCCGGATATAATACCAGCAC
Found at i:33406735 original size:22 final size:22
Alignment explanation
Indices: 33406692--33406736 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
33406682 TCTAACTAAG
*
33406692 AAATAAAAATAAACACTTAAAA
1 AAATAAAAATAAACACTAAAAA
*
33406714 AAATAAAAACTAAAGA-TAAAAA
1 AAATAAAAA-TAAACACTAAAAA
33406736 A
1 A
33406737 TTCCCCCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.16
Consensus pattern (22 bp):
AAATAAAAATAAACACTAAAAA
Found at i:33410168 original size:12 final size:12
Alignment explanation
Indices: 33410151--33410176 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33410141 ATCAAACAAG
33410151 ATTCACATATAT
1 ATTCACATATAT
33410163 ATTCACATATAT
1 ATTCACATATAT
33410175 AT
1 AT
33410177 ATATACTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (12 bp):
ATTCACATATAT
Found at i:33411029 original size:43 final size:42
Alignment explanation
Indices: 33410894--33411050 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 42
33410884 ATATCATACA
*
33410894 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAT-ATATTG
1 ATGCCAACGT-CCAGACGTGGTCTTACATGTAATC-TCATATTG
* * * *
33410937 ATGCC-ACTGTTCCAGATAG-GGTCTTACACGTAATCACATATCG
1 ATGCCAAC-G-TCCAGA-CGTGGTCTTACATGTAATCTCATATTG
33410980 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCTCATATTG
1 ATGCCAACGTCC-AGACGTGGTCTTACATGTAATCTCATATTG
* * *
33411023 ATGCCAACATTTCAGACATGGTCTTACA
1 ATGCCAAC-GTCCAGACGTGGTCTTACA
33411051 GATAATTACA
Statistics
Matches: 94, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
42 6 0.06
43 82 0.87
44 6 0.06
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCAACGTCCAGACGTGGTCTTACATGTAATCTCATATTG
Found at i:33411046 original size:86 final size:86
Alignment explanation
Indices: 33410894--33411067 Score: 239
Period size: 86 Copynumber: 2.0 Consensus size: 86
33410884 ATATCATACA
*
33410894 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCATATATTGATGCCACTGTTCCAGATAGGGT
1 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCATATATTGATGCCACTGTTCCAGACAGGGT
33410959 CTTACACG-TAATCACATATCG
66 CTTACA-GATAATCACATATCG
* * *
33410980 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATC-TCATATTGATGCCAACAT-TT-CAGACAT
1 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAT-ATATTGATGCC-AC-TGTTCCAGACAG
*
33411042 GGTCTTACAGATAATTACATATCG
63 GGTCTTACAGATAATCACATATCG
33411066 AT
1 AT
33411068 ATCGATGCCC
Statistics
Matches: 79, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
85 2 0.03
86 72 0.91
87 4 0.05
88 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (86 bp):
ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCATATATTGATGCCACTGTTCCAGACAGGGT
CTTACAGATAATCACATATCG
Found at i:33411106 original size:86 final size:87
Alignment explanation
Indices: 33410897--33411117 Score: 234
Period size: 86 Copynumber: 2.6 Consensus size: 87
33410887 TCATACAATG
* * * *
33410897 CCAACGTCCCAAACGTGGTCTTACATGTAATCATATATTGATGCC-ACTGTTCCAGATAGGGTCT
1 CCAACGCCCCAGACGTGGTCTTACATGTAATCACATATTGATGCCAACTGTTCCAGACAGGGTCT
*
33410961 TACACGTAATCACATATCGATG
66 TACACGTAATCACATATCGATA
* * * *
33410983 CCAACGTCCTAGACGTGGTCTTACATGTAATCTCATATTGATGCCAACAT-TT-CAGACATGGTC
1 CCAACGCCCCAGACGTGGTCTTACATGTAATCACATATTGATGCCAAC-TGTTCCAGACAGGGTC
*
33411046 TTACA-GATAATTACATATCGATA
65 TTACACG-TAATCACATATCGATA
* * * * * * **
33411069 TCGATGCCCCAGATGTGGTCTTACACGTAATAACATATCAATGCCAACT
1 CCAACGCCCCAGACGTGGTCTTACATGTAATCACATATTGATGCCAACT
33411118 CAAAATGTAC
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
85 2 0.02
86 106 0.94
87 4 0.04
88 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (87 bp):
CCAACGCCCCAGACGTGGTCTTACATGTAATCACATATTGATGCCAACTGTTCCAGACAGGGTCT
TACACGTAATCACATATCGATA
Found at i:33421402 original size:43 final size:42
Alignment explanation
Indices: 33421348--33421555 Score: 251
Period size: 43 Copynumber: 4.9 Consensus size: 42
33421338 CCAACGTCCT
* *
33421348 AGACGTGGTCTTACATGTAATCATATATCGATGCCAC-TGCCCC
1 AGACGTGGTCTTACACGTAATCACATATCGATGCCACAT--CCC
33421391 AGACAGT-GTCTTACACGTAATCACATATCGATGCCAACATCCC
1 AGAC-GTGGTCTTACACGTAATCACATATCGATGCC-ACATCCC
* *
33421434 AAACGTGGTCTTACATGTAATCACATATCGATGCCAACATCCC
1 AGACGTGGTCTTACACGTAATCACATATCGATGCC-ACATCCC
* * *
33421477 AGACGTGGTCTTACACATAATTATATATCGATGCCA-ATGCCC
1 AGACGTGGTCTTACACGTAATCACATATCGATGCCACAT-CCC
* *
33421519 TAGATGTGGTCTTACACGTAATCACATATCAATGCCA
1 -AGACGTGGTCTTACACGTAATCACATATCGATGCCA
33421556 ACTCAAAATG
Statistics
Matches: 145, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
41 2 0.01
42 6 0.04
43 132 0.91
44 4 0.03
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
AGACGTGGTCTTACACGTAATCACATATCGATGCCACATCCC
Found at i:33421556 original size:86 final size:86
Alignment explanation
Indices: 33421327--33421559 Score: 280
Period size: 86 Copynumber: 2.7 Consensus size: 86
33421317 CGAATAGTCG
* * * *
33421327 CACATA-CAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCATATATCGATGCC-ACTGCCC
1 CACATATCGATGCCAATGCCCTAGACGTGGTCTTACATGTAATCACATATCGATGCCAACT-CCC
*
33421390 CAGACAGTGTCTTACACGTAAT
65 CAGACAGTGTCTTACACATAAT
*
33421412 CACATATCGATGCCAACAT-CCC-AAACGTGGTCTTACATGTAATCACATATCGATGCCAACAT-
1 CACATATCGATGCC-A-ATGCCCTAGACGTGGTCTTACATGTAATCACATATCGATGCCAAC-TC
33421474 CCCAGAC-GTGGTCTTACACATAAT
63 CCCAGACAGT-GTCTTACACATAAT
* * * * *
33421498 TATATATCGATGCCAATGCCCTAGATGTGGTCTTACACGTAATCACATATCAATGCCAACTC
1 CACATATCGATGCCAATGCCCTAGACGTGGTCTTACATGTAATCACATATCGATGCCAACTC
33421560 AAAATGTACC
Statistics
Matches: 127, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
84 2 0.02
85 13 0.10
86 105 0.83
87 5 0.04
88 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (86 bp):
CACATATCGATGCCAATGCCCTAGACGTGGTCTTACATGTAATCACATATCGATGCCAACTCCCC
AGACAGTGTCTTACACATAAT
Found at i:33428886 original size:43 final size:43
Alignment explanation
Indices: 33428827--33429049 Score: 297
Period size: 43 Copynumber: 5.2 Consensus size: 43
33428817 ATATCGTACA
* **
33428827 ATGCCAACGTCCCAGACGTGGTCTTGCATGTAATCATGTATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
*
33428870 ATGCC-ACAGTCTCAGACAG-GGTCTTACATGTAATCACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
* *
33428913 GTGCCAACGTCCCAGACGTGATCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* * *
33428956 ATGCCAACATCCCAGATGTGGTCTTATATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
* ** *
33428999 ATGCCAACGTCCTAGACGTGGTCTTACACATAATCACATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
33429042 ATGCCAAC
1 ATGCCAAC
33429050 TTAAAATGTA
Statistics
Matches: 157, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
42 3 0.02
43 151 0.96
44 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:33431050 original size:19 final size:19
Alignment explanation
Indices: 33431028--33431066 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
33431018 TAAAACTAGC
*
33431028 ATTAGAATTAAAAATAAAG
1 ATTAAAATTAAAAATAAAG
*
33431047 ATTAAAATTAAAATTAAAG
1 ATTAAAATTAAAAATAAAG
33431066 A
1 A
33431067 CAAAGACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (19 bp):
ATTAAAATTAAAAATAAAG
Found at i:33447704 original size:44 final size:42
Alignment explanation
Indices: 33447654--33447811 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 42
33447644 ATGTGTCATT
* * *
33447654 GTGTAAGACCACGTCTGGGACATTGGTATCAATTTGTGATTTAC
1 GTGTAAGACCAAGTCTAGGACATTGGCATC-ATTT-TGATTTAC
* *
33447698 GTGTAAGACCAAGTCTAGGACATTGGCATCGTATATGATTT-C
1 GTGTAAGACCAAGTCTAGGACATTGGCATCAT-TTTGATTTAC
* ** * *
33447740 GTGTAAAACCCTGTCTGGGACAGTGGCATCGATATTTGA-TTAC
1 GTGTAAGACCAAGTCTAGGACATTGGCATC-AT-TTTGATTTAC
* *
33447783 ATGTAAGACCAAGTCTAGGACATTTGCAT
1 GTGTAAGACCAAGTCTAGGACATTGGCAT
33447812 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
42 28 0.30
43 36 0.39
44 28 0.30
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCAAGTCTAGGACATTGGCATCATTTTGATTTAC
Found at i:33450178 original size:36 final size:37
Alignment explanation
Indices: 33450131--33450207 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
33450121 TATTACGAAG
* * *
33450131 TCTTACCCGGACATAAT-CTCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
33450167 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
33450204 TCTT
1 TCTT
33450208 TAGAGCTGGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
36 16 0.46
37 19 0.54
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:33450499 original size:49 final size:47
Alignment explanation
Indices: 33450325--33450737 Score: 697
Period size: 47 Copynumber: 8.7 Consensus size: 47
33450315 CCCTTTGGGA
* * * * *
33450325 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCAATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33450372 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33450419 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33450466 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33450515 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33450564 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33450610 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33450657 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33450704 CTTATCTCATATATGCA-TGTTCACA-TCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
33450738 AGAATCCTAA
Statistics
Matches: 355, Mismatches: 7, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
46 56 0.16
47 203 0.57
49 96 0.27
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33454661 original size:40 final size:40
Alignment explanation
Indices: 33454628--33455011 Score: 645
Period size: 40 Copynumber: 9.8 Consensus size: 40
33454618 CCAGCATGAT
* * * * *
33454628 TGCTCTTCGAGACCTAACCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
33454668 TGCTCTTCGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
33454707 TGCTC-TCGGGACTTAG-CCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
33454745 TGCTC-TC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
33454783 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
33454823 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
33454863 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
33454902 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
33454942 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
33454982 TGCTCTTCGGGACTTAGCCCGGATATATCA
1 TGCTCTTCGGGACTTAGCCCGGATATATCA
33455012 ATTCTCATGT
Statistics
Matches: 327, Mismatches: 12, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
37 8 0.02
38 60 0.18
39 72 0.22
40 187 0.57
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:33454900 original size:119 final size:118
Alignment explanation
Indices: 33454628--33455011 Score: 639
Period size: 119 Copynumber: 3.2 Consensus size: 118
33454618 CCAGCATGAT
* * * * ** *
33454628 TGCTCTTCGAGACCTAACCCGGATATAACACCAGCACGAATGCTCTTCGGGTTTAGCACGGATAT
1 TGCTCTTCG-GACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATAT
33454693 ATCACTAGCACGAATGCTC-TCGGGACTTAG-CCGGATATATCACTAGCACGAA
65 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
33454745 TGCTC-TCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAT
1 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG-ACTTAGCCCGGATAT
33454809 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
65 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
33454863 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATAT
*
33454928 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACAAA
65 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
33454982 TGCTCTTCGGGACTTAGCCCGGATATATCA
1 TGCTCTTC-GGACTTAGCCCGGATATATCA
33455012 ATTCTCATGT
Statistics
Matches: 253, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
115 36 0.14
116 34 0.13
117 16 0.06
118 27 0.11
119 117 0.46
120 23 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (118 bp):
TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATA
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:33456280 original size:37 final size:37
Alignment explanation
Indices: 33456220--33456297 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
33456210 TATTACGAAG
* * *
33456220 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
33456257 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
33456294 TCTT
1 TCTT
33456298 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:33456484 original size:47 final size:47
Alignment explanation
Indices: 33456415--33456779 Score: 617
Period size: 47 Copynumber: 7.7 Consensus size: 47
33456405 GCCTTCGGGA
* * * * *
33456415 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33456462 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33456509 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33456556 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33456605 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33456651 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33456698 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
33456745 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
33456780 AGAATCCTAA
Statistics
Matches: 306, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
46 47 0.15
47 212 0.69
49 47 0.15
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33456736 original size:189 final size:190
Alignment explanation
Indices: 33456415--33456758 Score: 636
Period size: 189 Copynumber: 1.8 Consensus size: 190
33456405 GCCTTCGGGA
* * *
33456415 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCTATTAGGCCTTATCACATATATACAC
33456480 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
33456545 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33456605 CTTATCACATATATACACTTTCACATTCATCACATCGGC-ATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCTATTAGGCCTTATCACATATATACAC
33456669 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
33456734 GGCCATTAGGCCTTATCTCATATAT
131 GGCCATTAGGCCTTATCACATATAT
33456759 GCATGTTCAC
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
189 114 0.77
190 35 0.23
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCTATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33463701 original size:40 final size:40
Alignment explanation
Indices: 33463617--33463840 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
33463607 TTGAATGATG
* * * *
33463617 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
33463657 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33463697 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33463736 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33463775 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33463816 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33463841 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 72 0.44
40 81 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33463753 original size:79 final size:80
Alignment explanation
Indices: 33463617--33463840 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
33463607 TTGAATGATG
* * * * *
33463617 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
33463680 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
33463697 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCA-TT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
33463760 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
33463775 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
33463839 TG
65 TG
33463841 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 26 0.21
79 78 0.62
80 22 0.17
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:33463871 original size:79 final size:79
Alignment explanation
Indices: 33463656--33463873 Score: 225
Period size: 79 Copynumber: 2.8 Consensus size: 79
33463646 AAGTGACCAT
* * * *
33463656 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCT-AAGCCCGAAGGCA
1 ATCCGGGCTAAG-TCCCGAAGGCA-TTGTGCGAG-TGACTAAATCCGGGTTAAATCCCGAAGGCA
33463718 TTGGTGCGAGTTACTAA
63 TTGGTGCGAGTTACTAA
* * * *
33463735 ATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 ATCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTG
33463800 GTGCGAGTTACTATA
66 GTGCGAGTTACTA-A
* * *
33463815 A-CCGGGCTATGTCCCGAAGGCATT-TGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTGTG--CGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
33463874 TACGTGATTT
Statistics
Matches: 119, Mismatches: 13, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
77 1 0.01
78 24 0.20
79 81 0.68
80 13 0.11
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:33471730 original size:40 final size:40
Alignment explanation
Indices: 33471646--33471869 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
33471636 TTGAATGATG
* * * *
33471646 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
33471686 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33471726 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33471765 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33471805 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33471845 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33471870 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 70 0.43
40 85 0.52
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33471782 original size:79 final size:80
Alignment explanation
Indices: 33471646--33471869 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
33471636 TTGAATGATG
* * * * *
33471646 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
33471709 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
33471726 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
33471790 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
33471805 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
33471868 TG
65 TG
33471870 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
78 7 0.06
79 101 0.80
80 19 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:33471887 original size:79 final size:79
Alignment explanation
Indices: 33471653--33471902 Score: 233
Period size: 79 Copynumber: 3.2 Consensus size: 79
33471643 ATGTCCGGGC
* * * * * * **
33471653 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATTTGAACG
* *
33471716 AGAT-ACTAATTCCGGGC
64 AG-TGACTAAATCC-GGT
* **
33471733 TAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
*
33471797 TTACTAAATCCGGT
66 TGACTAAATCCGGT
* *
33471811 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA
*
33471875 G-GAGCTATATCCGGT
65 GTGA-CTAAATCCGGT
* *
33471890 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
33471903 TACGTGATTT
Statistics
Matches: 146, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
78 9 0.06
79 125 0.86
80 12 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
TGACTAAATCCGGT
Found at i:33476851 original size:268 final size:268
Alignment explanation
Indices: 33476367--33476902 Score: 964
Period size: 268 Copynumber: 2.0 Consensus size: 268
33476357 GTAATATTTG
33476367 AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
1 AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
*
33476432 GATTTGTACACCAGTATGAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
66 GATTTGTACACCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
33476497 AAGACATGTCTGGGACATGCTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
131 AAGACATGTCTGGGACATGCTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
* *
33476562 CATCAGCCTCAACAGAGATAGCCAGTGTAAGACGTGTCTGGGACATGCATCGACTAAGAGTTGTG
196 CATCAGCCTCAACAAAGATAGCCAGTGTAAGACGTGTCTGGGAAATGCATCGACTAAGAGTTGTG
33476627 CTAGTGTA
261 CTAGTGTA
33476635 AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
1 AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
* *
33476700 GATTTGTACGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGGCGAGGGCTAGTGT
66 GATTTGTACACCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
* *
33476765 AAGACATGTCTGGGACATGCTTTAGCCATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
131 AAGACATGTCTGGGACATGCTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
* * * * *
33476830 CATCGGCCTCAACAAAGATAGCTAGTGTAAGACGTGTTTGGGAAATGCATTGGCTAAGAGTTGTG
196 CATCAGCCTCAACAAAGATAGCCAGTGTAAGACGTGTCTGGGAAATGCATCGACTAAGAGTTGTG
33476895 CTAGTGTA
261 CTAGTGTA
33476903 GGACATGTCT
Statistics
Matches: 256, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
268 256 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (268 bp):
AGATAGTAGAAATATCTCGTTGAACCTTAGGATATGAATTGGATATTCGTGCTAAGACGTTGGGT
GATTTGTACACCAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGT
AAGACATGTCTGGGACATGCTTCAGACATATTATGAGTGCCAGAGTAAGACATGTCTAGGACATG
CATCAGCCTCAACAAAGATAGCCAGTGTAAGACGTGTCTGGGAAATGCATCGACTAAGAGTTGTG
CTAGTGTA
Found at i:33481312 original size:86 final size:85
Alignment explanation
Indices: 33481186--33481345 Score: 196
Period size: 86 Copynumber: 1.9 Consensus size: 85
33481176 ATATGTGTTA
* * *
33481186 TCGTGTAAGACCACGTCTGGGACGTTAGCATCAATTTTTGATTTACGTGTAAGACCATGCCTAGG
1 TCGTGTAAGACCACGTCTGGGACGTTAGCATCAATATTTGA-TTACATGTAAGACCACGCCTAGG
33481251 ACATTGGCATCATATATGATT
65 ACATTGGCATCATATATGATT
** * ** * *
33481272 TCGTGTAAGACCTTGTCTGGGACAG-TGGCATTGATATTTGATTACATGTAAGACCACGTCTGGG
1 TCGTGTAAGACCACGTCTGGGAC-GTTAGCATCAATATTTGATTACATGTAAGACCACGCCTAGG
*
33481336 ACGTTGGCAT
65 ACATTGGCAT
33481346 TGTACGAACT
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 28 0.45
86 33 0.53
87 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (85 bp):
TCGTGTAAGACCACGTCTGGGACGTTAGCATCAATATTTGATTACATGTAAGACCACGCCTAGGA
CATTGGCATCATATATGATT
Found at i:33481314 original size:43 final size:43
Alignment explanation
Indices: 33481186--33481347 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 43
33481176 ATATGTGTTA
* ** *
33481186 TCGTGTAAGACCACGTCTGGGACGTTAGCATCAATTTTTGATT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATT
* * * * * *
33481229 TACGTGTAAGACCATGCCTAGGACATTGGCA-TCATATATGATT
1 T-CGTGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATT
**
33481272 TCGTGTAAGACCTTGTCTGGGACAG-TGGCATTGATATTTGATT
1 TCGTGTAAGACCACGTCTGGGAC-GTTGGCATTGATATTTGATT
* *
33481315 ACATGTAAGACCACGTCTGGGACGTTGGCATTG
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATTG
33481348 TACGAACTTA
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 25 0.26
43 47 0.49
44 24 0.25
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATTGATATTTGATT
Found at i:33483260 original size:29 final size:29
Alignment explanation
Indices: 33483202--33483358 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
33483192 ATAGTAAGTC
*
33483202 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
33483230 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
33483259 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
33483288 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
33483316 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
33483345 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33483359 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:33483309 original size:57 final size:58
Alignment explanation
Indices: 33483202--33483358 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
33483192 ATAGTAAGTC
*
33483202 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
33483259 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
33483316 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
33483359 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:33490366 original size:29 final size:29
Alignment explanation
Indices: 33490308--33490464 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
33490298 ATAGTAAGTC
*
33490308 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
33490336 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
33490365 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
33490394 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
33490422 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
33490451 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33490465 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:33490415 original size:57 final size:58
Alignment explanation
Indices: 33490308--33490464 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
33490298 ATAGTAAGTC
*
33490308 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
33490365 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
33490422 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
33490465 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:33495447 original size:141 final size:142
Alignment explanation
Indices: 33495170--33495458 Score: 490
Period size: 141 Copynumber: 2.0 Consensus size: 142
33495160 GTTTTTTCAG
* *
33495170 TCCAATAACTTAGCAAACATGTCCACCTTTTATCACCTTCTTTATGGGGTCAAGTAGTCAACCCC
1 TCCAATAACTTAGCAAACATGTCCACCTTTTATCACCTTCTTTACGAGGTCAAGTAGTCAACCCC
* * *
33495235 ATGCCCAAAATTGCATGGTCTTGTCGTCTACATGGATAATTTGTGCATGGCCATCTTTTATTTAT
66 ATGCCCAAAATTGCATGGTCTTGCCGTCCACATGGATAATTTGTGCATGGACATCTTTTATTTAT
33495300 TTAAATCATGTC
131 TTAAATCATGTC
* * * *
33495312 TCCAATAACTTAGCAGACATGTCCATCTTTTATCACCTTCTTTACGAGGTCAAGTAGTCGACTCC
1 TCCAATAACTTAGCAAACATGTCCACCTTTTATCACCTTCTTTACGAGGTCAAGTAGTCAACCCC
33495377 ATG-CCAAAATTGCATGGTCTTGCCGTCCACATGGATAATTTGTGCATGGACATCTTTTATTTAT
66 ATGCCCAAAATTGCATGGTCTTGCCGTCCACATGGATAATTTGTGCATGGACATCTTTTATTTAT
33495441 TTAAATCATGTC
131 TTAAATCATGTC
33495453 TCCAAT
1 TCCAAT
33495459 TGCCTACCTA
Statistics
Matches: 138, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
141 76 0.55
142 62 0.45
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (142 bp):
TCCAATAACTTAGCAAACATGTCCACCTTTTATCACCTTCTTTACGAGGTCAAGTAGTCAACCCC
ATGCCCAAAATTGCATGGTCTTGCCGTCCACATGGATAATTTGTGCATGGACATCTTTTATTTAT
TTAAATCATGTC
Found at i:33512303 original size:46 final size:48
Alignment explanation
Indices: 33512230--33512332 Score: 138
Period size: 46 Copynumber: 2.2 Consensus size: 48
33512220 GACAGGACAG
* * *
33512230 GACAGAAATGAGCCATGTAAGTCCATA-T-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
* * *
33512276 GGCAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
33512324 GACAGGAAT
1 GACAGGAAT
33512333 AATTCATGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
46 24 0.50
47 1 0.02
48 23 0.48
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
Done.