Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 108 of 349
Found at i:33836594 original size:37 final size:37
Alignment explanation
Indices: 33836531--33836602 Score: 85
Period size: 37 Copynumber: 1.9 Consensus size: 37
33836521 ATTATTATGG
*
33836531 TATTGAATTGAATAAAATTTCATGAATTATT-AGTGAT
1 TATTGAATTGAATAAAATATCATGAA-TATTGAGTGAT
* *
33836568 TATTGATATTGAATAGAATAT-GTGAATATTGAGTG
1 TATTGA-ATTGAATAAAATATCATGAATATTGAGTG
33836603 GAAAATTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
36 4 0.13
37 14 0.47
38 12 0.40
ACGTcount: A:0.39, C:0.01, G:0.18, T:0.42
Consensus pattern (37 bp):
TATTGAATTGAATAAAATATCATGAATATTGAGTGAT
Found at i:33837132 original size:18 final size:18
Alignment explanation
Indices: 33837089--33837135 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
33837079 GACTGTCTGC
** *
33837089 TACTGAATAATTGACTGT
1 TACTGAATAAACGACTGA
33837107 TA-TAGAATAAACGACTGA
1 TACT-GAATAAACGACTGA
33837125 TACTGAATAAA
1 TACTGAATAAA
33837136 TGAATATTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 1 0.04
18 22 0.92
19 1 0.04
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.30
Consensus pattern (18 bp):
TACTGAATAAACGACTGA
Found at i:33838812 original size:26 final size:26
Alignment explanation
Indices: 33838782--33838833 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
33838772 CACCACTGAA
*
33838782 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
33838808 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
33838834 CTTTTATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:33838978 original size:103 final size:102
Alignment explanation
Indices: 33838751--33839116 Score: 603
Period size: 103 Copynumber: 3.6 Consensus size: 102
33838741 TAGCCGTTAT
* *
33838751 TGGTGGAT-CCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
33838815 ATCAGCACATAGCAACCCCCTTTT-ATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
33838851 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
33838916 AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
65 AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
33838954 TGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
*
33839019 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 AATCAGCACATAGCAACCCCCTTT-TCATTTCAAAGATA
* * * **
33839058 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
33839117 TTTATATACA
Statistics
Matches: 252, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
100 8 0.03
101 49 0.19
102 29 0.12
103 97 0.38
104 68 0.27
105 1 0.00
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.20
Consensus pattern (102 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
Found at i:33839016 original size:26 final size:26
Alignment explanation
Indices: 33838987--33839038 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
33838977 ACCAATGAAA
*
33838987 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
33839013 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
33839039 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:33839477 original size:29 final size:29
Alignment explanation
Indices: 33839444--33839507 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
33839434 TAATCCACCA
33839444 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
33839473 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
33839503 CCCAA
1 CCCAA
33839508 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:33839481 original size:30 final size:30
Alignment explanation
Indices: 33839451--33839507 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
33839441 CCACCCAACT
33839451 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
33839480 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
33839508 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:33844293 original size:27 final size:27
Alignment explanation
Indices: 33844254--33844501 Score: 196
Period size: 27 Copynumber: 9.3 Consensus size: 27
33844244 TTAATTTACC
* *
33844254 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACTAAAATACCCTCGATTTGCA
* * * *
33844281 AAATTATTGAAATACCCTAG-TTTGTA
1 AAATTACTAAAATACCCTCGATTTGCA
* * *
33844307 AAATTACCAAAATACCC-CTAATTTGTA
1 AAATTACTAAAATACCCTC-GATTTGCA
* *
33844334 AAATTACCAAAATACCCCCGATTTGCA
1 AAATTACTAAAATACCCTCGATTTGCA
* * *
33844361 AAATTATTGAAATACCTTCGATTTGCA
1 AAATTACTAAAATACCCTCGATTTGCA
* *
33844388 AAATTACTGAAATACCCT-GATTTGTA
1 AAATTACTAAAATACCCTCGATTTGCA
* * * *
33844414 AAATTACTAAAATACCTTTGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGCA
* * * *
33844441 AAATTACCAAAGTACCCCCGATTTACA
1 AAATTACTAAAATACCCTCGATTTGCA
***** *
33844468 AAATTACCGTTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTGCA
33844495 AAATTAC
1 AAATTAC
33844502 CGAAACAACC
Statistics
Matches: 180, Mismatches: 37, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
26 41 0.23
27 138 0.77
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGCA
Found at i:33844318 original size:53 final size:53
Alignment explanation
Indices: 33844254--33844506 Score: 197
Period size: 53 Copynumber: 4.7 Consensus size: 53
33844244 TTAATTTACC
* *
33844254 AAATTACCAAAATACCCTCGATTAGCAAAATTATTGAAATACCCT-AGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGCAAAATTACTGAAATACCCTGA-TTTGTA
* * ** * *
33844307 AAATTACCAAAATACCC-CTAATTTGTAAAATTACCAAAATACCCCCGATTTGCA
1 AAATTACCAAAATACCCTC-GATTTGCAAAATTACTGAAATA-CCCTGATTTGTA
*** *
33844361 AAATTATTGAAATACCTTCGATTTGCAAAATTACTGAAATACCCTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGCAAAATTACTGAAATACCCTGATTTGTA
* * * * * * * **
33844414 AAATTACTAAAATACCTTTGACTTGTAAAATTAC-CAAAGTACCCCCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGCAAAATTACTGAAA-TA-CCCTGATTTGTA
**** * *
33844468 AAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAA
1 AAATTACCAAAATACCCTCGATTTGCAAAATTACTGAAA
33844507 CAACCCTATA
Statistics
Matches: 155, Mismatches: 38, Indels: 12
0.76 0.19 0.06
Matches are distributed among these distances:
52 4 0.03
53 74 0.48
54 72 0.46
55 5 0.03
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
AAATTACCAAAATACCCTCGATTTGCAAAATTACTGAAATACCCTGATTTGTA
Found at i:33844411 original size:80 final size:80
Alignment explanation
Indices: 33844254--33844429 Score: 255
Period size: 80 Copynumber: 2.2 Consensus size: 80
33844244 TTAATTTACC
* *
33844254 AAATTACCAAAATACCCTCGATTAGCAAAATTATTGAAATACCCTAGTTTGTAAAATTACCAAAA
1 AAATTACCAAAATACCCCCGATTAGCAAAATTATTGAAATACCCTAGTTTGCAAAATTACCAAAA
33844319 TACCCCTAATTTGTA
66 TACCCCTAATTTGTA
* * * **
33844334 AAATTACCAAAATACCCCCGATTTGCAAAATTATTGAAATACCTTCGATTTGCAAAATTACTGAA
1 AAATTACCAAAATACCCCCGATTAGCAAAATTATTGAAATACCCTAG-TTTGCAAAATTACCAAA
*
33844399 ATA-CCCTGATTTGTA
65 ATACCCCTAATTTGTA
*
33844414 AAATTACTAAAATACC
1 AAATTACCAAAATACC
33844430 TTTGACTTGT
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 69 0.80
81 17 0.20
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCCCCGATTAGCAAAATTATTGAAATACCCTAGTTTGCAAAATTACCAAAA
TACCCCTAATTTGTA
Found at i:33844463 original size:80 final size:81
Alignment explanation
Indices: 33844254--33844475 Score: 218
Period size: 80 Copynumber: 2.8 Consensus size: 81
33844244 TTAATTTACC
* ** ** *
33844254 AAATTACCAAAATACCCTCGA-TTAGCAAAATTATTGAAATACCCTAG-TTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCCGACTT-GCAAAATTATCCAAATACCCCCGATTTGCAAAATTACCAA
33844317 AATACCCCTAATTTGTA
65 AATACCCCTAATTTGTA
* ** ** **
33844334 AAATTACCAAAATACCCCCGATTTGCAAAATTATTGAAATACCTTCGATTTGCAAAATTACTGAA
1 AAATTACCAAAATACCCCCGACTTGCAAAATTATCCAAATACCCCCGATTTGCAAAATTACCAAA
*
33844399 ATA-CCCTGATTTGTA
66 ATACCCCTAATTTGTA
* *** * *
33844414 AAATTACTAAAATACCTTTGACTTGTAAAATTA-CCAAAGTACCCCCGATTTACAAAATTACC
1 AAATTACCAAAATACCCCCGACTTGCAAAATTATCCAAA-TACCCCCGATTTGCAAAATTACC
33844476 GTTTTACCCT
Statistics
Matches: 120, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 3 0.03
80 98 0.82
81 19 0.16
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCCGACTTGCAAAATTATCCAAATACCCCCGATTTGCAAAATTACCAAA
ATACCCCTAATTTGTA
Found at i:33844489 original size:107 final size:107
Alignment explanation
Indices: 33844247--33844506 Score: 333
Period size: 107 Copynumber: 2.4 Consensus size: 107
33844237 GAATACTTTA
* * * *
33844247 ATTTACCAAATTACCAAAATACCCTCGATTAGCAAAATTATTGAAATACCCTAGTTTGTAAAATT
1 ATTTACAAAATTACCGAAATACCCTCGATTTGCAAAATTACTGAAATACCCTAGTTTGTAAAATT
*
33844312 ACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCCG
66 ACCAAAATACCCCTAACTTGTAAAATTACCAAAATACCCCCG
* ** *
33844354 ATTTGCAAAATTATTGAAATACCTTCGATTTGCAAAATTACTGAAATACCCT-GATTTGTAAAAT
1 ATTTACAAAATTACCGAAATACCCTCGATTTGCAAAATTACTGAAATACCCTAG-TTTGTAAAAT
* ** * *
33844418 TACTAAAATACCTTTGACTTGTAAAATTACCAAAGTACCCCCG
65 TACCAAAATACCCCTAACTTGTAAAATTACCAAAATACCCCCG
*** * *
33844461 ATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAA
1 ATTTACAAAATTACCGAAATACCCTCGATTTGCAAAATTACTGAAA
33844507 CAACCCTATA
Statistics
Matches: 129, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
106 1 0.01
107 128 0.99
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (107 bp):
ATTTACAAAATTACCGAAATACCCTCGATTTGCAAAATTACTGAAATACCCTAGTTTGTAAAATT
ACCAAAATACCCCTAACTTGTAAAATTACCAAAATACCCCCG
Found at i:33844526 original size:27 final size:27
Alignment explanation
Indices: 33844496--33844726 Score: 282
Period size: 27 Copynumber: 8.6 Consensus size: 27
33844486 CGATTTACAA
* * * *
33844496 AATTACCGAAACAACCCTATAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33844523 AATTACCGAAATACCCCTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
33844550 AATTATTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
33844577 AATTACCAAAATACCCCTATATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
33844604 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
33844631 AATTATCGAAATACCCCTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
33844658 AATTACTGAAATACCTCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33844685 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33844712 AATTACCGAGATACC
1 AATTACCGAAATACC
33844727 TTATTGGGGT
Statistics
Matches: 175, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 175 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:33845337 original size:27 final size:26
Alignment explanation
Indices: 33845307--33845415 Score: 110
Period size: 27 Copynumber: 4.1 Consensus size: 26
33845297 ATTCTGTTAA
* *
33845307 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
33845334 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* *
33845361 GTGGCTCTGCCAAAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGT-TCTG
* * ** *
33845388 GTGACTCTATCATAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
33845414 GT
1 GT
33845416 AGCCATGCTG
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 15 0.21
27 50 0.69
28 7 0.10
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:33845563 original size:6 final size:6
Alignment explanation
Indices: 33845532--33845594 Score: 67
Period size: 6 Copynumber: 10.3 Consensus size: 6
33845522 TTGCATTCAC
* *
33845532 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
33845581 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
33845595 AATGTTTCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
5 3 0.06
6 40 0.83
7 4 0.08
8 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:33850919 original size:39 final size:39
Alignment explanation
Indices: 33850861--33850938 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
33850851 CCCTGTGGAG
* *
33850861 ACGATAACTCGAGACTTACTTATTACTTGATTACGACTA
1 ACGATAACTCGAGACTTACTTATGACTTGATAACGACTA
* *
33850900 ACGATAACTCGATAGTTACTTATGACTTGATAACGACTA
1 ACGATAACTCGAGACTTACTTATGACTTGATAACGACTA
33850939 TGTACACTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (39 bp):
ACGATAACTCGAGACTTACTTATGACTTGATAACGACTA
Found at i:33851839 original size:14 final size:14
Alignment explanation
Indices: 33851820--33851849 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
33851810 TTAACTTATT
33851820 ATAAATTCGAATAC
1 ATAAATTCGAATAC
33851834 ATAAATTCGAATAC
1 ATAAATTCGAATAC
33851848 AT
1 AT
33851850 GGGTCATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (14 bp):
ATAAATTCGAATAC
Found at i:33854595 original size:26 final size:26
Alignment explanation
Indices: 33854566--33854625 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
33854556 TCCCTTTGAA
* * *
33854566 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
33854592 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
33854620 TCATTC
1 TCATTC
33854626 TCAATATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:33854611 original size:28 final size:28
Alignment explanation
Indices: 33854580--33854647 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
33854570 TCGATATTTT
33854580 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
33854608 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
* *
33854636 GTACACTGAGTG
1 GCACACTAAGTG
33854648 CCATATTTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:33856717 original size:22 final size:22
Alignment explanation
Indices: 33856635--33856732 Score: 67
Period size: 22 Copynumber: 4.5 Consensus size: 22
33856625 TGCCCTTAAA
*
33856635 CAGAATGGCCA-AGAGCCATAAA
1 CAGAATGG-CATAGAGCCATAAT
* * *
33856657 CAAAATGGTTATA-AACCATAAT
1 CAGAATGG-CATAGAGCCATAAT
* * *
33856679 CA-AGATAGCACATAGCCATAAT
1 CAGA-ATGGCATAGAGCCATAAT
33856701 CAGAATGGCATAGAGCCATAAT
1 CAGAATGGCATAGAGCCATAAT
* *
33856723 TAGGATGGCA
1 CAGAATGGCA
33856733 CAACGCTATT
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
21 3 0.05
22 53 0.91
23 2 0.03
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.18
Consensus pattern (22 bp):
CAGAATGGCATAGAGCCATAAT
Found at i:33856883 original size:27 final size:27
Alignment explanation
Indices: 33856783--33856884 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 27
33856773 CAGCGATGGT
* *
33856783 AATATAATCGGCACACAA-CCACGGGTA
1 AATATGATCGGCACA-AAGCCACAGGTA
* * * *
33856810 AATATGATCGACACAGAGTCATCA-ATA
1 AATATGATCGGCACAAAGCCA-CAGGTA
* **
33856837 AATATGATAGGCACTTAGCCACAGGTA
1 AATATGATCGGCACAAAGCCACAGGTA
*
33856864 AATATGATTGGCACAAAGCCA
1 AATATGATCGGCACAAAGCCA
33856885 TAATCAGGAT
Statistics
Matches: 57, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
26 3 0.05
27 53 0.93
28 1 0.02
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.20
Consensus pattern (27 bp):
AATATGATCGGCACAAAGCCACAGGTA
Found at i:33856897 original size:22 final size:22
Alignment explanation
Indices: 33856872--33856935 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
33856862 TAAATATGAT
33856872 TGGCACAAAGCCATAATCAGGA
1 TGGCACAAAGCCATAATCAGGA
* ** * *
33856894 TGGCACAGAGCCATTTTTAGGT
1 TGGCACAAAGCCATAATCAGGA
*
33856916 TGGCAAAAAGCCATAATCAG
1 TGGCACAAAGCCATAATCAG
33856936 ATTACACAGC
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (22 bp):
TGGCACAAAGCCATAATCAGGA
Found at i:33857323 original size:27 final size:26
Alignment explanation
Indices: 33857292--33857384 Score: 141
Period size: 27 Copynumber: 3.5 Consensus size: 26
33857282 ATCATTTTCC
*
33857292 CTACAGGGGTATTTCAGTAATTTTACA
1 CTACAAGGGTATTTC-GTAATTTTACA
33857319 CTACAAGGGTATTTCGGTAATTTTACA
1 CTACAAGGGTATTTC-GTAATTTTACA
*
33857346 CTACAAGGGTATTTCGATAATTGTACA
1 CTACAAGGGTATTTCG-TAATTTTACA
33857373 CTACAAGGGTAT
1 CTACAAGGGTAT
33857385 ATTTTTTACA
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
26 1 0.02
27 61 0.98
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (26 bp):
CTACAAGGGTATTTCGTAATTTTACA
Found at i:33860188 original size:22 final size:22
Alignment explanation
Indices: 33860122--33860189 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
33860112 GTTATAAACC
* *
33860122 ATAATCAAGATGGCACAAAGAC-
1 ATAATCAGGATGGCAC-AAGGCT
* *
33860144 ATAATAAGGATGGCA-GAGAGCT
1 ATAATCAGGATGGCACAAG-GCT
33860166 ATAATCAGGATGGCACAAGGCT
1 ATAATCAGGATGGCACAAGGCT
33860188 AT
1 AT
33860190 CGGTAACTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 2 0.05
21 1 0.03
22 32 0.86
23 2 0.05
ACGTcount: A:0.43, C:0.15, G:0.25, T:0.18
Consensus pattern (22 bp):
ATAATCAGGATGGCACAAGGCT
Found at i:33860308 original size:22 final size:22
Alignment explanation
Indices: 33860283--33860337 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
33860273 ATTGGCATAA
33860283 AGCCATAATCAAGATGGCACAG
1 AGCCATAATCAAGATGGCACAG
** * *
33860305 AGCCATTTTTAGGATGGCACAG
1 AGCCATAATCAAGATGGCACAG
33860327 AGCCATAATCA
1 AGCCATAATCA
33860338 GATTACGCAG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (22 bp):
AGCCATAATCAAGATGGCACAG
Found at i:33860709 original size:27 final size:27
Alignment explanation
Indices: 33860691--33860767 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
33860681 TTTGCCCTAC
* *
33860691 AAGGGTATATCGATAATTTTTCACTAT
1 AAGGGTATTTCGATAATTTTACACTAT
33860718 AAGGGTATTTCGATAATTTTACACTAT
1 AAGGGTATTTCGATAATTTTACACTAT
*
33860745 AAGGGTATTTCGGTAATTTTACA
1 AAGGGTATTTCGATAATTTTACA
33860768 AACTGGGGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTCGATAATTTTACACTAT
Found at i:33860785 original size:26 final size:26
Alignment explanation
Indices: 33860720--33860798 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
33860710 TTCACTATAA
* * *
33860720 GGGTATTTCGATAATTTTACACTA-TAA
1 GGGTATTTCGGTAATTTTACA-AACT-G
33860747 GGGTATTTCGGTAATTTTACAAACTG
1 GGGTATTTCGGTAATTTTACAAACTG
* *
33860773 GGGTATTTGGGTAATTTTATAAACTG
1 GGGTATTTCGGTAATTTTACAAACTG
33860799 AGGTCTTAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 25 0.54
27 21 0.46
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGTATTTCGGTAATTTTACAAACTG
Found at i:33863491 original size:13 final size:13
Alignment explanation
Indices: 33863450--33863497 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
33863440 ATACATATAT
33863450 TTTCATATAACCA
1 TTTCATATAACCA
* *
33863463 ATTCACATAACCA
1 TTTCATATAACCA
*
33863476 TTTCATATAACTA
1 TTTCATATAACCA
*
33863489 TTTCGTATA
1 TTTCATATA
33863498 TTAGTTTCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.40
Consensus pattern (13 bp):
TTTCATATAACCA
Found at i:33870072 original size:47 final size:47
Alignment explanation
Indices: 33870018--33870351 Score: 472
Period size: 47 Copynumber: 7.1 Consensus size: 47
33870008 TAGGATTTTT
* ** * *
33870018 TGTGATGAATGTAAATGTGTATATATGAGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
* * * **
33870065 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCTGAATGGAAAA
1 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
* *
33870112 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
33870159 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
*
33870206 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAGTGGCCAA
1 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
* *
33870253 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
* * * * *
33870300 TGTGGTGAGTATGAACATGCATATATGTGGTAAAGCCGAATGGCTC-A
1 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC-CAA
33870347 TGTGA
1 TGTGA
33870352 AATATATATA
Statistics
Matches: 259, Mismatches: 27, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 258 1.00
48 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
Found at i:33870164 original size:22 final size:22
Alignment explanation
Indices: 33870137--33870211 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
33870127 CATGCATATG
33870137 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
33870159 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
33870184 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
33870206 TGTGAT
1 TGTGAT
33870212 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:33870811 original size:37 final size:37
Alignment explanation
Indices: 33870559--33870810 Score: 459
Period size: 37 Copynumber: 6.8 Consensus size: 37
33870549 ATATATTCCA
33870559 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
33870596 GGTAAGACCCGATGACTGCGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
33870633 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
33870670 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
33870707 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
33870744 GGTAAGACCCGATGACTACGTGTGGAGATTTTATCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
33870781 GGTAAGACCCGATAACTTCGTGTGGAGATT
1 GGTAAGACCCGATGACTACGTGTGGAGATT
33870811 TCGTCTGAGC
Statistics
Matches: 209, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 209 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:33873383 original size:21 final size:20
Alignment explanation
Indices: 33873359--33873397 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
33873349 ATTTAATTAA
33873359 GAAATGTGTAAAATTAATGGT
1 GAAATGTGTAAAA-TAATGGT
*
33873380 GAAATGTGTGAAATAATG
1 GAAATGTGTAAAATAATG
33873398 AAAATTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.31
Consensus pattern (20 bp):
GAAATGTGTAAAATAATGGT
Found at i:33880961 original size:47 final size:47
Alignment explanation
Indices: 33880904--33881207 Score: 425
Period size: 47 Copynumber: 6.4 Consensus size: 47
33880894 ATTGATGTAC
* * *
33880904 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
33880951 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
33881000 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
33881047 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
33881094 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
33881141 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
33881188 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
33881208 TCCGGAAGGG
Statistics
Matches: 239, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 197 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:33881085 original size:22 final size:22
Alignment explanation
Indices: 33881058--33881179 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
33881048 CATGTGTATG
33881058 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
33881080 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
33881105 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
33881127 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
33881152 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
33881174 TGTGAT
1 TGTGAT
33881180 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:33884739 original size:27 final size:27
Alignment explanation
Indices: 33884682--33884741 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
33884672 ATACATCTCA
*
33884682 TAGGGGCATATCAATCATTTTACCATG
1 TAGGGGCATATCAATCATTTTACAATG
* * *
33884709 TAGGGGCATTTTAGTCATTTTATCAAT-
1 TAGGGGCATATCAATCATTTTA-CAATG
33884736 TAGGGG
1 TAGGGG
33884742 GTCTAGGGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (27 bp):
TAGGGGCATATCAATCATTTTACAATG
Found at i:33886314 original size:46 final size:46
Alignment explanation
Indices: 33886244--33886599 Score: 271
Period size: 46 Copynumber: 7.7 Consensus size: 46
33886234 TGTAACCCGC
* * * * *
33886244 CCATAAGCGAACTCAGACTTAACTCAACGAGCTCGGGCATTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* *
33886290 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * * *
33886340 --TTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* * * *
33886383 CCATAAGTGAACTCGAACTCAACTCAATGAGCTT-AGGCCTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGCATTCGCAT
* * * * * *
33886429 CCATAAGTGAATTCGGACTCGACTAAATGAGTTTGGATGCCAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-CA-TTCGCAT
* * * *
33886478 --TTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* * ***
33886521 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
**
33886567 CCATAAGTGAACTTAGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
33886600 TGGATGCCAA
Statistics
Matches: 246, Mismatches: 45, Indels: 38
0.75 0.14 0.12
Matches are distributed among these distances:
42 4 0.02
43 7 0.03
44 1 0.00
45 6 0.02
46 180 0.73
47 32 0.13
48 4 0.02
49 5 0.02
50 5 0.02
51 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:33886528 original size:138 final size:138
Alignment explanation
Indices: 33886244--33886608 Score: 538
Period size: 138 Copynumber: 2.6 Consensus size: 138
33886234 TGTAACCCGC
* * ** * *
33886244 CCATAAGCGAACTC-AGACTTAACTCAACGAGCTCGGGCATTCGTATCCATAAGTGAACTCGGAC
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGCTTAGGCATTCGCATCCATAAGTGAATTCGGAC
33886308 TCAACTCAACGAGTTTGGATGCCTAGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGG
65 TCAACTCAACGAGTTTGGATGCC-AGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGG
33886373 ACGTTCGCAT
129 ACGTTCGCAT
* *
33886383 CCATAAGTGAACTCGAACTCAACTCAATGAGCTTAGGCCTTCGCATCCATAAGTGAATTCGGACT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTTAGGCATTCGCATCCATAAGTGAATTCGGACT
* * *
33886448 CGACTAAATGAGTTTGGATGCCAGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGGAC
66 CAACTCAACGAGTTTGGATGCCAGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGGAC
33886513 GTTCGCAT
131 GTTCGCAT
*** *
33886521 CCATAAGTGAACTCGAACTCAACTCAACGAG-TTCAGATGTTCGCATCCATAAGTGAACTT-AGA
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTT-AGGCATTCGCATCCATAAGTGAA-TTCGGA
33886584 CTCAACTCAACGAGTTTGGATGCCA
64 CTCAACTCAACGAGTTTGGATGCCA
33886609 AAATATTTGA
Statistics
Matches: 204, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
137 2 0.01
138 125 0.61
139 76 0.37
140 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (138 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTTAGGCATTCGCATCCATAAGTGAATTCGGACT
CAACTCAACGAGTTTGGATGCCAGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGGAC
GTTCGCAT
Found at i:33886578 original size:92 final size:92
Alignment explanation
Indices: 33886244--33886599 Score: 312
Period size: 92 Copynumber: 3.9 Consensus size: 92
33886234 TGTAACCCGC
* * * * *** *
33886244 CCATAAGCGAACTCAGACTTAACTCAACGAGCTCGGGCATTCGTATCCATAAGTGAACTCGGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTCGGACT
* * * * *
33886309 CAACTCAACGAGTTTGGATGCCTAG-TT
66 CAACTCAACGAGTTAGGACG-TTCGCAT
* * * *
33886336 ACATTTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGAA
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTCGGA
* *
33886400 CTCAACTCAATGAGCTTAGG-CCTTCGCAT
64 CTCAACTCAACGAG-TTAGGACGTTCGCAT
* * * * * * *
33886429 CCATAAGTGAATTCGGACTCGACTAAATGAGTTTGGATG--C-CAGTTACATTTCA-TGAACTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCA--TCCA--TAAGTGAACTCG
*
33886490 GACTCAACTCAACGAGTTCGGACGTTCGCAT
62 GACTCAACTCAACGAGTTAGGACGTTCGCAT
* * **
33886521 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGATGTTCGCATCCATAAGTGAACTTAGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTCGGACT
33886586 CAACTCAACGAGTT
66 CAACTCAACGAGTT
33886600 TGGATGCCAA
Statistics
Matches: 208, Mismatches: 42, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
89 2 0.01
90 1 0.00
91 11 0.05
92 116 0.56
93 69 0.33
94 7 0.03
95 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (92 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTCGGACT
CAACTCAACGAGTTAGGACGTTCGCAT
Found at i:33895899 original size:104 final size:104
Alignment explanation
Indices: 33895719--33895926 Score: 389
Period size: 104 Copynumber: 2.0 Consensus size: 104
33895709 ATTCCCTCAT
*
33895719 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGATTTCTTATAC
1 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGACTTCTTATAC
33895784 CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
66 CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
33895823 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGACTTCTTATAC
1 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGACTTCTTATAC
* *
33895888 CCACATGGCAAGAGCAGCAAAATTAAACACTTCCTTGCA
66 CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
33895927 TCAAGCAGTC
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 101 1.00
ACGTcount: A:0.32, C:0.31, G:0.11, T:0.26
Consensus pattern (104 bp):
AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGACTTCTTATAC
CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
Found at i:33903864 original size:26 final size:26
Alignment explanation
Indices: 33903835--33903887 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33903825 TCAAACATGC
33903835 ATTTAGGTCAATTTA-CTCCTAGAGGT
1 ATTTAGGT-AATTTATCTCCTAGAGGT
* * *
33903861 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGAGGT
33903887 A
1 A
33903888 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGAGGT
Found at i:33905175 original size:24 final size:24
Alignment explanation
Indices: 33905156--33905239 Score: 123
Period size: 24 Copynumber: 3.5 Consensus size: 24
33905146 TGATCATCTT
* * *
33905156 CTAAATCTTCTCCTTTATCAACTC
1 CTAAATCCTCTCCCTTATCAGCTC
33905180 CTAAATCCTCTCCCTTATCAGCTC
1 CTAAATCCTCTCCCTTATCAGCTC
*
33905204 CTAAATCCTCTCCCTAATCAGCTC
1 CTAAATCCTCTCCCTTATCAGCTC
*
33905228 CTAAATCTTCTC
1 CTAAATCCTCTC
33905240 TTGACAGCCT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 55 1.00
ACGTcount: A:0.24, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
CTAAATCCTCTCCCTTATCAGCTC
Found at i:33905192 original size:12 final size:12
Alignment explanation
Indices: 33905148--33905239 Score: 53
Period size: 12 Copynumber: 7.7 Consensus size: 12
33905138 CTGCTCCTTG
*
33905148 ATCATCTTCTAA
1 ATCATCTCCTAA
* **
33905160 ATCTTCTCCTTT
1 ATCATCTCCTAA
*
33905172 ATCAACTCCTAA
1 ATCATCTCCTAA
* *
33905184 ATCCTCTCCCT-T
1 ATCATCT-CCTAA
*
33905196 ATCAGCTCCTAA
1 ATCATCTCCTAA
*
33905208 ATCCTCTCCCT-A
1 ATCATCT-CCTAA
*
33905220 ATCAGCTCCTAA
1 ATCATCTCCTAA
*
33905232 ATCTTCTC
1 ATCATCTC
33905240 TTGACAGCCT
Statistics
Matches: 56, Mismatches: 20, Indels: 8
0.67 0.24 0.10
Matches are distributed among these distances:
11 6 0.11
12 44 0.79
13 6 0.11
ACGTcount: A:0.24, C:0.37, G:0.02, T:0.37
Consensus pattern (12 bp):
ATCATCTCCTAA
Found at i:33909705 original size:39 final size:38
Alignment explanation
Indices: 33909662--33909744 Score: 94
Period size: 38 Copynumber: 2.1 Consensus size: 38
33909652 TAATAAGGGA
* * *
33909662 TTTTAATTATGTCATAGTTTAGGACATCTTAAATATATG
1 TTTTAAATATGTCATAG-TTAAGACATCTTAAATACATG
* * *
33909701 TTTTAAATGTGTCCTAGTTAAGACATCTTTAATACATG
1 TTTTAAATATGTCATAGTTAAGACATCTTAAATACATG
33909739 TCTTTA
1 T-TTTA
33909745 GTTCAGACAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 19 0.51
39 18 0.49
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.46
Consensus pattern (38 bp):
TTTTAAATATGTCATAGTTAAGACATCTTAAATACATG
Found at i:33910917 original size:30 final size:26
Alignment explanation
Indices: 33910883--33910937 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
33910873 TTTGAAGTAC
33910883 AAAGTTTGCAATATATAAATAAAAAAGAAG
1 AAAGTTT-CAA-AT-TAAA-AAAAAAGAAG
33910913 AAAGTTTCAAATTAAAAAAAAAGAA
1 AAAGTTTCAAATTAAAAAAAAAGAA
33910938 AAGAAAAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 9 0.36
27 4 0.16
28 2 0.08
29 3 0.12
30 7 0.28
ACGTcount: A:0.64, C:0.04, G:0.11, T:0.22
Consensus pattern (26 bp):
AAAGTTTCAAATTAAAAAAAAAGAAG
Found at i:33915368 original size:48 final size:48
Alignment explanation
Indices: 33915264--33915368 Score: 124
Period size: 48 Copynumber: 2.2 Consensus size: 48
33915254 CAAACGAATG
* * *
33915264 AAGCTCGCACCAGAAGTGCTAATATCATGGCCTGAAGCCAATTCAATG
1 AAGCTCGTACCAGAAGTGCTAATATCATGGCCTGAAGCCAAATCAATA
** *
33915312 AATATCGTACCCA-AAGTGCTAATATCATGGCGC-GAAGCTAAATCAATA
1 AAGCTCGTA-CCAGAAGTGCTAATATCATGGC-CTGAAGCCAAATCAATA
33915360 AAGCTCGTA
1 AAGCTCGTA
33915369 ATGACATGTC
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
48 43 0.91
49 4 0.09
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (48 bp):
AAGCTCGTACCAGAAGTGCTAATATCATGGCCTGAAGCCAAATCAATA
Found at i:33915657 original size:14 final size:16
Alignment explanation
Indices: 33915638--33915671 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
33915628 TATGATATCA
33915638 AATTAAA-CT-TATTC
1 AATTAAATCTCTATTC
33915652 AATTAAATCTCTATTC
1 AATTAAATCTCTATTC
33915668 AATT
1 AATT
33915672 TATGTAACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 2 0.11
16 9 0.50
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (16 bp):
AATTAAATCTCTATTC
Found at i:33915965 original size:16 final size:16
Alignment explanation
Indices: 33915944--33915975 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33915934 CTTGGGACAT
33915944 TCCTGTGTGGCCAGGC
1 TCCTGTGTGGCCAGGC
*
33915960 TCCTGTGTGGGCAGGC
1 TCCTGTGTGGCCAGGC
33915976 CACTTGGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.28, G:0.41, T:0.25
Consensus pattern (16 bp):
TCCTGTGTGGCCAGGC
Found at i:33917211 original size:42 final size:41
Alignment explanation
Indices: 33917106--33917253 Score: 129
Period size: 42 Copynumber: 3.5 Consensus size: 41
33917096 ATACCAATCT
*
33917106 CATATCCCAAATATGGTCTTAATG-AGATCTCGTATCGATGC
1 CATATCCCAAATATGGTCTTAAAGAAG-TCTCGTATCGATGC
** * * *
33917147 CAATAGTCCCAGTTATGGTCTTATACGAAGTCTCTTATCGATTC
1 C-ATA-TCCCAAATATGGTCTTA-AAGAAGTCTCGTATCGATGC
* ** **
33917191 CATATCCCAAATATGCTCTTACAAGAAGTCTCACATAAATGC
1 CATATCCCAAATATGGTCTTA-AAGAAGTCTCGTATCGATGC
33917233 CATATCCCAGAA-ATGGTCTTA
1 CATATCCCA-AATATGGTCTTA
33917254 CACATAGTTT
Statistics
Matches: 86, Mismatches: 16, Indels: 9
0.77 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 48 0.56
43 20 0.23
44 15 0.17
45 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (41 bp):
CATATCCCAAATATGGTCTTAAAGAAGTCTCGTATCGATGC
Found at i:33927527 original size:40 final size:40
Alignment explanation
Indices: 33927434--33927648 Score: 260
Period size: 40 Copynumber: 5.4 Consensus size: 40
33927424 AAGCCAAGTA
* * *
33927434 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
33927472 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
33927512 CCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
33927552 CCTTCGGGACTTAGCCCAGATGTAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
33927592 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
33927633 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
33927649 TGGTTATCAT
Statistics
Matches: 154, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 101 0.66
41 21 0.14
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:33936416 original size:12 final size:13
Alignment explanation
Indices: 33936391--33936419 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
33936381 AGATGGACAA
33936391 AATTTGACTTTTT
1 AATTTGACTTTTT
33936404 AATTTGA-TTTTT
1 AATTTGACTTTTT
33936416 AATT
1 AATT
33936420 CATTTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (13 bp):
AATTTGACTTTTT
Found at i:33939139 original size:34 final size:36
Alignment explanation
Indices: 33939099--33939183 Score: 101
Period size: 34 Copynumber: 2.5 Consensus size: 36
33939089 AGTCTTAGCC
33939099 CCTATTTCAGTAACAGTAG-CAGA-CTAGGCCTTAG-
1 CCTATTTCAGTAACAGTAGACA-ATCTAGGCCTTAGA
* *
33939133 CCTATTTCAATAGCAGT-GACAATCTAGGCCTTAGA
1 CCTATTTCAGTAACAGTAGACAATCTAGGCCTTAGA
33939168 CC-ATTTCAGT-ACAGTA
1 CCTATTTCAGTAACAGTA
33939184 TGCAAGCAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
33 6 0.14
34 35 0.81
35 2 0.05
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (36 bp):
CCTATTTCAGTAACAGTAGACAATCTAGGCCTTAGA
Found at i:33956097 original size:158 final size:158
Alignment explanation
Indices: 33955809--33956121 Score: 608
Period size: 158 Copynumber: 2.0 Consensus size: 158
33955799 TCTGCTTATG
33955809 AAGCATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAG
1 AAGCATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAG
*
33955874 TAATGAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTC
66 TAACGAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTC
33955939 ACTATAAATTGCAGAAATTGAATTACAT
131 ACTATAAATTGCAGAAATTGAATTACAT
33955967 AAGCATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAG
1 AAGCATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAG
*
33956032 TAACGAATGAGTAAATTTAGCCTTGGCTGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTC
66 TAACGAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTC
33956097 ACTATAAATTGCAGAAATTGAATTA
131 ACTATAAATTGCAGAAATTGAATTA
33956122 GGGGCTTAAT
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
158 153 1.00
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (158 bp):
AAGCATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAG
TAACGAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTC
ACTATAAATTGCAGAAATTGAATTACAT
Found at i:33964987 original size:28 final size:29
Alignment explanation
Indices: 33964950--33965005 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 29
33964940 ATACGGGCTA
*
33964950 GGACACGGGCATGT-TGTAGCCGTGTGAG
1 GGACACGGGCATGTGTCTAGCCGTGTGAG
* * *
33964978 GGACATGGGCGTGTGTCTGGCCGTGTGA
1 GGACACGGGCATGTGTCTAGCCGTGTGA
33965006 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.14, C:0.18, G:0.45, T:0.23
Consensus pattern (29 bp):
GGACACGGGCATGTGTCTAGCCGTGTGAG
Found at i:33969869 original size:26 final size:22
Alignment explanation
Indices: 33969816--33969859 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
33969806 AAAAATGACC
33969816 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTTATTAT
*
33969838 AAAATTAATTAAAATTTATTAT
1 AAAATTAATCAAAATTTATTAT
33969860 GTTAATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATCAAAATTTATTAT
Found at i:33985440 original size:47 final size:47
Alignment explanation
Indices: 33985386--33985579 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
33985376 TAGGATTTTT
** * *
33985386 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33985433 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* ** *
33985480 ATGTGATGAATGTGAGCATGCATATGCGTCATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
33985527 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
33985574 ATGTGA
1 ATGTGA
33985580 AATATATATA
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:33985486 original size:22 final size:22
Alignment explanation
Indices: 33985415--33985486 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
33985405 GTATATATGA
33985415 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
33985437 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
33985462 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
33985484 GAT
1 GAT
33985487 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:33985891 original size:37 final size:37
Alignment explanation
Indices: 33985783--33985891 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
33985773 GGAAATATAT
*
33985783 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
*
33985820 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
* * *
33985857 TCCGGGTAAGACCTGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
33985892 CGCCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
Found at i:33987812 original size:39 final size:39
Alignment explanation
Indices: 33987608--33987830 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
33987598 TTGAATGCTG
* * * * * *
33987608 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
33987648 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
33987688 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
33987728 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
33987768 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
33987807 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33987831 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:33987850 original size:79 final size:80
Alignment explanation
Indices: 33987688--33987865 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
33987678 AGATACAAGT
* * * *
33987688 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
33987753 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
33987768 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
33987832 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
33987847 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
33987866 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:33995756 original size:39 final size:39
Alignment explanation
Indices: 33995552--33995774 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
33995542 TTGAATGCTG
* * * * * *
33995552 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
33995592 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
33995632 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
33995672 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
33995712 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
33995751 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33995775 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:33995794 original size:79 final size:80
Alignment explanation
Indices: 33995632--33995809 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
33995622 AGATACAAGT
* * * *
33995632 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
33995697 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
33995712 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
33995776 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
33995791 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
33995810 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:33999342 original size:43 final size:42
Alignment explanation
Indices: 33999262--33999411 Score: 178
Period size: 42 Copynumber: 3.6 Consensus size: 42
33999252 ATACCAATGC
* * *
33999262 CATATCCTAGATATGGTCTTACATG-GGATCTCGTATCGATGG
1 CATATCCTAGATATGGTCTTACACGAAG-TCTCATATCGATGG
* * * *
33999304 CAATAGCCTAGCTATGGTCTTACACGAAGTCTCTTATCGATGT
1 C-ATATCCTAGATATGGTCTTACACGAAGTCTCATATCGATGG
* * *
33999347 CATATCCCAGATATGGTCTTACACGAAGCCTCATATAGAT-G
1 CATATCCTAGATATGGTCTTACACGAAGTCTCATATCGATGG
33999388 CATATCCTAGATATGGTCTTACAC
1 CATATCCTAGATATGGTCTTACAC
33999412 ATAATTTTAG
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
41 23 0.25
42 34 0.37
43 34 0.37
44 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (42 bp):
CATATCCTAGATATGGTCTTACACGAAGTCTCATATCGATGG
Found at i:34004688 original size:28 final size:28
Alignment explanation
Indices: 34004625--34004722 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
34004615 ATATTAAGTC
*
34004625 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
34004652 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
34004680 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
34004709 CGCACACTTAGTGC
1 CGCACACTTAGTGC
34004723 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:34006701 original size:41 final size:44
Alignment explanation
Indices: 34006581--34006713 Score: 147
Period size: 41 Copynumber: 3.2 Consensus size: 44
34006571 ACATAACCCA
* *** *
34006581 CCGGAT-TTAAGTAACTCGCA-CAAA-GCCTTCGCCGCTTAAGC
1 CCGGATATTAAGTATCTCGCAGCAAATGCCTTCGAATCTTAAGT
34006622 CCGGA-ATTAAGTATCTCGCAGCAAATGCCTTCGAATCTTAAGT
1 CCGGATATTAAGTATCTCGCAGCAAATGCCTTCGAATCTTAAGT
*
34006665 CCGGATATT-AGTATCT-GCA-CAAATGCCTTC-AGATCTTTAGT
1 CCGGATATTAAGTATCTCGCAGCAAATGCCTTCGA-ATCTTAAGT
34006706 CCGGATAT
1 CCGGATAT
34006714 GGTCACTTAG
Statistics
Matches: 81, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
40 1 0.01
41 45 0.56
42 7 0.09
43 25 0.31
44 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (44 bp):
CCGGATATTAAGTATCTCGCAGCAAATGCCTTCGAATCTTAAGT
Found at i:34009616 original size:1 final size:1
Alignment explanation
Indices: 34009610--34009639 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
34009600 AAATATGTAA
*
34009610 GGGGGGGGGTGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
34009640 TGAATGCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.97, T:0.03
Consensus pattern (1 bp):
G
Found at i:34021431 original size:28 final size:28
Alignment explanation
Indices: 34021368--34021465 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
34021358 ATATTAAGTC
*
34021368 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
34021395 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
34021423 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
34021452 CGCACACTTAGTGC
1 CGCACACTTAGTGC
34021466 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:34028236 original size:47 final size:48
Alignment explanation
Indices: 34028167--34028457 Score: 399
Period size: 51 Copynumber: 6.0 Consensus size: 48
34028157 CGTTTTCACG
* * * *
34028167 TCACATTCATCACGTCGACTATTAGGCCTTATCACACAT-ATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATAATACACTT
* * *
34028214 TCACATTCATCACGTCGGCTATTAGGCCTTATCACACAT-ATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATAATACACTT
* *
34028261 TCACATTCATCACATCGGCTATTAGGCCTTATTACAGATATACATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTA-T-CACATATA-ATACACTT
34028312 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATA-ATACACTT
34028363 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-ATACACTT
* *
34028412 TCACATTCATCACATCGGCCATTAGGCCTTATTACATA-CATACACT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATAATACACT
34028458 CTCTTGGCTG
Statistics
Matches: 230, Mismatches: 8, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
47 83 0.36
48 1 0.00
49 58 0.25
50 1 0.00
51 87 0.38
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (48 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATAATACACTT
Found at i:34028328 original size:51 final size:49
Alignment explanation
Indices: 34028167--34028457 Score: 414
Period size: 47 Copynumber: 6.0 Consensus size: 49
34028157 CGTTTTCACG
* * * *
34028167 TCACATTCATCACGTCGACTATTAGGCCTTATCACACAT--ATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
* * *
34028214 TCACATTCATCACGTCGGCTATTAGGCCTTATCACACAT--ATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
* *
34028261 TCACATTCATCACATCGGCTATTAGGCCTTATTACAGATATACATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTA-T-CACATATACATACACTT
34028312 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACATACACTT
34028363 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
*
34028412 TCACATTCATCACATCGGCCATTAGGCCTTATTAC--ATACATACACT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACT
34028458 CTCTTGGCTG
Statistics
Matches: 231, Mismatches: 7, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
47 87 0.38
48 1 0.00
49 55 0.24
50 1 0.00
51 87 0.38
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTT
Found at i:34028436 original size:100 final size:100
Alignment explanation
Indices: 34028167--34028455 Score: 437
Period size: 100 Copynumber: 2.9 Consensus size: 100
34028157 CGTTTTCACG
* * * *
34028167 TCACATTCATCACGTCGACTATTAGGCCTTATCACACAT--ATACACTTTCACATTCATCACGTC
1 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATC
*
34028230 GGCTATTAGGCCTTATCAC--ACAT--ATACACTT
66 GGCCATTAGGCCTTATCACATACATACATACACTT
*
34028261 TCACATTCATCACATCGGCTATTAGGCCTTATTACAGATATACATACACTTTCACATTCATCACA
1 TCACATTCATCACATCGGCTATTAGGCCTTA-T-CACATATACATACACTTTCACATTCATCACA
*
34028326 TCGGCCATTAGGCCTTATCACATATATACATACACTT
64 TCGGCCATTAGGCCTTATCACATACATACATACACTT
*
34028363 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATC
*
34028428 GGCCATTAGGCCTTATTACATACATACA
66 GGCCATTAGGCCTTATCACATACATACA
34028456 CTCTCTTGGC
Statistics
Matches: 176, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
94 29 0.16
95 1 0.01
96 5 0.03
98 41 0.23
100 61 0.35
101 1 0.01
102 38 0.22
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.31
Consensus pattern (100 bp):
TCACATTCATCACATCGGCTATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATACATACATACACTT
Found at i:34032517 original size:29 final size:29
Alignment explanation
Indices: 34032470--34032598 Score: 145
Period size: 29 Copynumber: 4.5 Consensus size: 29
34032460 CATGAGATTG
* * *
34032470 GCACTAAGTGTGCGGGTTTAAAT-TGCATA
1 GCACTAAGTGTGCGAGTTTGAATATGTA-A
* *
34032499 GCACTAAGTGTGCAAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGAATATGTAA
* *
34032528 GCACTAAGGGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGAATATGTAA
* * *
34032557 GCACTAAGTGTGCGAGTTTTATTATATAA
1 GCACTAAGTGTGCGAGTTTGAATATGTAA
34032586 -CACTAAGTGTGCG
1 GCACTAAGTGTGCG
34032599 GACTTACTAT
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 13 0.15
29 73 0.82
30 3 0.03
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATATGTAA
Found at i:34040588 original size:29 final size:29
Alignment explanation
Indices: 34040541--34040642 Score: 143
Period size: 29 Copynumber: 3.5 Consensus size: 29
34040531 CATGAGATTG
* * * *
34040541 GCACTAAGTGTGCGGGTTTAAAT-TGCATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA-A
*
34040570 GCACTAAGTGTGCAAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
34040599 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAA
34040628 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
34040643 CACTAAGTGT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 63 0.95
30 3 0.05
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGATTATGTAA
Found at i:34040648 original size:14 final size:14
Alignment explanation
Indices: 34040629--34040655 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
34040619 ATTATGTAAG
34040629 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
34040643 CACTAAGTGTGCG
1 CACTAAGTGTGCG
34040656 GACTTACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (14 bp):
CACTAAGTGTGCGA
Found at i:34043708 original size:21 final size:22
Alignment explanation
Indices: 34043677--34043730 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
34043667 GTGCAGTGCT
*
34043677 CACATGCCCGTGTGGTCACGGGA
1 CACA-GCCCGTGTGGGCACGGGA
34043700 CA-AGCCCGTGTGGGCACGGGA
1 CACAGCCCGTGTGGGCACGGGA
34043721 CACA-CCCGTG
1 CACAGCCCGTG
34043731 AAACCCTGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 25 0.86
22 2 0.07
23 2 0.07
ACGTcount: A:0.19, C:0.33, G:0.35, T:0.13
Consensus pattern (22 bp):
CACAGCCCGTGTGGGCACGGGA
Found at i:34047632 original size:46 final size:47
Alignment explanation
Indices: 34047559--34047685 Score: 134
Period size: 46 Copynumber: 2.7 Consensus size: 47
34047549 ACTTAATTGT
* * * * *
34047559 GAGCTAGTGTAATACATGTCTGTGACATGCATTGACCAC-ATTATG-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATTGACCACGA-GACGTA
* * *
34047605 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATTGACCACGAGACGTA
* *
34047652 -AGTCAGTGTAAGACATGTTTGGGACATGCATTGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATTGA
34047686 GACAGCCCTA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
46 65 0.97
47 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATTGACCACGAGACGTA
Found at i:34049286 original size:37 final size:37
Alignment explanation
Indices: 34049236--34049314 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
34049226 TTATTACGAA
* * *
34049236 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
34049273 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
34049310 GTCTT
1 GTCTT
34049315 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:34049519 original size:47 final size:47
Alignment explanation
Indices: 34049432--34050021 Score: 840
Period size: 47 Copynumber: 12.4 Consensus size: 47
34049422 GCCTTCGGGA
** * * * * * * *
34049432 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
34049479 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34049526 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34049572 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34049619 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34049666 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34049713 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34049760 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34049807 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34049854 CTTATCATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34049903 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ACAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34049954 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
34050003 CTTATTACATACATACACT
1 CTTATCACACATATACACT
34050022 CTCTTGGCTG
Statistics
Matches: 514, Mismatches: 24, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 44 0.09
47 329 0.64
49 92 0.18
51 49 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34053579 original size:40 final size:40
Alignment explanation
Indices: 34053498--34053716 Score: 243
Period size: 39 Copynumber: 5.6 Consensus size: 40
34053488 CCAGCATGAT
* * * * *
34053498 TGCTCTTCGGGACCTAG-CCGGACATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
34053537 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
34053577 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
34053617 TGCTC-TCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
34053656 TGCTCTTC-GGACTTAG-CCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGACTTAGCCCGGATA-CATCAC-TAGCACGAA
*
34053695 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
34053717 CATCATTCAA
Statistics
Matches: 156, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 11 0.07
39 76 0.49
40 69 0.44
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:34053691 original size:79 final size:77
Alignment explanation
Indices: 34053485--34053716 Score: 252
Period size: 79 Copynumber: 2.9 Consensus size: 77
34053475 CGAATACACG
* * * * * * **
34053485 TCACCAGCATGATTGCTCTTCGGGACCTAGCCGGACATAACACCAGCACGAATGCTCTTCGGGGT
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCGGATATATCACTAGCA-GAATGCTCTTCGGGAC
* *
34053550 TTAGCACGGATATA
64 TTAGCCCGGATACA
* *
34053564 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTC-TCGGGA
1 TCACTAGCATGAATGCTCTTCGG-ACTTAG-CCGGATATATCACTAGCA-GAATGCTCTTCGGGA
34053628 CTTAGCCCGGATACA
63 CTTAGCCCGGATACA
* * *
34053643 TCACTAGCATGAATGCTCTTCGGACTTAGCCGGATATGGTCACTTAGCACAAAGC-CTTCGGGAC
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCGGATAT-ATCAC-TAGCAGAATGCTCTTCGGGAC
34053707 TTAGCCCGGA
64 TTAGCCCGGA
34053717 CATCATTCAA
Statistics
Matches: 130, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
77 8 0.06
78 33 0.25
79 67 0.52
80 22 0.17
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (77 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCGGATATATCACTAGCAGAATGCTCTTCGGGACTT
AGCCCGGATACA
Found at i:34054061 original size:29 final size:29
Alignment explanation
Indices: 34054022--34054100 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
34054012 CTTAATAATC
*
34054022 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
34054052 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
34054081 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
34054101 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:34054143 original size:43 final size:43
Alignment explanation
Indices: 34054082--34054184 Score: 179
Period size: 43 Copynumber: 2.4 Consensus size: 43
34054072 TGCATTTCAA
**
34054082 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGCAAACACTTATT
34054125 GCCCGCACACTTAGTGCCAATCTCACAACCGCAAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGCAAACACTTATT
*
34054168 ACCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
34054185 TGAAAACCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.28, C:0.37, G:0.14, T:0.21
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGCAAACACTTATT
Found at i:34056087 original size:37 final size:37
Alignment explanation
Indices: 34056037--34056115 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
34056027 TTATTACGAA
* * *
34056037 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
34056074 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
34056111 GTCTT
1 GTCTT
34056116 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:34056321 original size:47 final size:47
Alignment explanation
Indices: 34056234--34056775 Score: 782
Period size: 47 Copynumber: 11.4 Consensus size: 47
34056224 CCTTTCGGGA
* * * * * * * *
34056234 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34056281 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34056328 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
34056375 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34056422 CTTATCACACATATACACTTTCACATTCATCAC-TCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
34056468 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34056515 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34056562 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34056609 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
34056660 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
34056709 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34056758 CTTAT-ACATACATACACT
1 CTTATCACATATATACACT
34056776 CTCTTGGCTG
Statistics
Matches: 469, Mismatches: 21, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
46 53 0.11
47 271 0.58
48 5 0.01
49 98 0.21
51 42 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34056553 original size:187 final size:190
Alignment explanation
Indices: 34056249--34056775 Score: 801
Period size: 187 Copynumber: 2.8 Consensus size: 190
34056239 CACATTTATG
* * * * * * * *
34056249 CACTTTCACATCCATTACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
34056314 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTA
66 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
34056379 TCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCAC-ACAT-ATA
131 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAACATAATA
* *
34056437 CACTTTCACATTCATCAC-TCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
* * * *
34056501 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
34056566 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACATA
131 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACA-ACATA-ATA
34056628 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATC
34056693 ACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACATCGGCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34056758 CTTAT-ACATACATACACT
127 CTTATCACACATATACACT
34056776 CTCTTGGCTG
Statistics
Matches: 306, Mismatches: 24, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
187 149 0.49
188 16 0.05
189 3 0.01
191 21 0.07
192 23 0.08
194 44 0.14
195 11 0.04
196 39 0.13
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (190 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAACATAATA
Found at i:34060924 original size:40 final size:40
Alignment explanation
Indices: 34060869--34061006 Score: 215
Period size: 40 Copynumber: 3.5 Consensus size: 40
34060859 CGGATGATAA
* *
34060869 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
34060909 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
34060949 CCGGGCTAGGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
34060989 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
34061007 TACTTGGGTT
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 13 0.14
40 77 0.86
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:34068833 original size:38 final size:38
Alignment explanation
Indices: 34068782--34068929 Score: 154
Period size: 38 Copynumber: 3.8 Consensus size: 38
34068772 GTTTAAGTAA
*
34068782 TTAATTATGTCATAATTTAAACATCATTAATATGAGTT
1 TTAATTATGTCATAATTTAAACATCTTTAATATGAGTT
* * *
34068820 TTAATTATGTCATAATCTGAACATCTTTAATAAGAGATT
1 TTAATTATGTCATAATTTAAACATCTTTAATATGAG-TT
* * *
34068859 TTAATTATGTCATAGTTTAGGACATCTTAAATAT-ATGTT
1 TTAATTATGTCATAATTTA-AACATCTTTAATATGA-GTT
* * * * *
34068898 TTAAATGTGTCCTAGTTTAGACATCTTTAATA
1 TTAATTATGTCATAATTTAAACATCTTTAATA
34068930 CATGTCTTTA
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
38 44 0.47
39 37 0.40
40 12 0.13
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.44
Consensus pattern (38 bp):
TTAATTATGTCATAATTTAAACATCTTTAATATGAGTT
Found at i:34073995 original size:65 final size:66
Alignment explanation
Indices: 34073880--34074013 Score: 252
Period size: 65 Copynumber: 2.0 Consensus size: 66
34073870 ATTTCTAGAA
34073880 AAGAAAATTTACCCGTTATAACCCCTAGCAATTCAACATTCTCTTTTGCTTTGATTACATAATCT
1 AAGAAAATTTACCCGTTATAACCCCTAGCAATTCAACATTCTCTTTTGCTTTGATTACATAATCT
34073945 C
66 C
*
34073946 AAGAAAATTTACCCGTTATAA-CCCTGGCAATTCAACATTCTCTTTTGCTTTGATTACATAATCT
1 AAGAAAATTTACCCGTTATAACCCCTAGCAATTCAACATTCTCTTTTGCTTTGATTACATAATCT
34074010 C
66 C
34074011 AAG
1 AAG
34074014 CTGACACTCT
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
65 46 0.69
66 21 0.31
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (66 bp):
AAGAAAATTTACCCGTTATAACCCCTAGCAATTCAACATTCTCTTTTGCTTTGATTACATAATCT
C
Found at i:34086712 original size:26 final size:26
Alignment explanation
Indices: 34086683--34086764 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
34086673 TGGTACAAAT
*
34086683 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
34086709 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
34086735 TGATAATGGTTTGGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
34086761 TGAT
1 TGAT
34086765 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:34088137 original size:26 final size:26
Alignment explanation
Indices: 34088108--34088189 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
34088098 AGGTACAAAT
34088108 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
34088134 TGATAATGGATTACGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
34088160 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
34088186 TGAT
1 TGAT
34088190 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:34089568 original size:26 final size:26
Alignment explanation
Indices: 34089539--34089646 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
34089529 TGGTACAAAT
34089539 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
34089565 TGATAATGGATTAGGTAAGTATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34089591 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
34089617 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34089643 TGAT
1 TGAT
34089647 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:34091025 original size:26 final size:26
Alignment explanation
Indices: 34090996--34091077 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
34090986 TGGTACAAAT
34090996 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
34091022 TGATAATGAGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34091048 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34091074 TGAT
1 TGAT
34091078 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:34092460 original size:26 final size:26
Alignment explanation
Indices: 34092431--34092538 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
34092421 TGGTACAAAT
*
34092431 TGATAATGGGTTAGGTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
34092457 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34092483 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
34092509 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34092535 TGAT
1 TGAT
34092539 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:34093395 original size:27 final size:27
Alignment explanation
Indices: 34093308--34093399 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
34093298 AAACTTAAAG
34093308 AAAAATATGGTATTGATTGGCCAAACC
1 AAAAATATGGTATTGATTGGCCAAACC
** *
34093335 AAAAATTATGAAAATT--TT----AAA-G
1 AAAAA-TATG-GTATTGATTGGCCAAACC
34093357 AAAAATATGGTATTGATTGGCCAAACC
1 AAAAATATGGTATTGATTGGCCAAACC
34093384 AAAAATATGGTATTGA
1 AAAAATATGGTATTGA
34093400 GTGGTCAGAC
Statistics
Matches: 50, Mismatches: 6, Indels: 18
0.68 0.08 0.24
Matches are distributed among these distances:
20 3 0.06
21 4 0.08
22 7 0.14
23 3 0.06
26 3 0.06
27 23 0.46
28 4 0.08
29 3 0.06
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.28
Consensus pattern (27 bp):
AAAAATATGGTATTGATTGGCCAAACC
Found at i:34093881 original size:27 final size:27
Alignment explanation
Indices: 34093841--34093976 Score: 156
Period size: 27 Copynumber: 5.0 Consensus size: 27
34093831 GGAAGCGTCT
*
34093841 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
*
34093868 TAGTGGCTCTGCCAC-ATATATCTG-TCC
1 TGGTGGCTCTGCCACAAT-TATCTGAT-C
*
34093895 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
*
34093922 TGGTGGCTCTGCCAC-GTATATCT-ATTC
1 TGGTGGCTCTGCCACAAT-TATCTGA-TC
34093949 TGGTGGCTCTGCCACAA-TATCTGTATC
1 TGGTGGCTCTGCCACAATTATCTG-ATC
34093976 T
1 T
34093977 CGTGACTTCG
Statistics
Matches: 93, Mismatches: 7, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
26 10 0.11
27 79 0.85
28 4 0.04
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATC
Found at i:34093928 original size:54 final size:54
Alignment explanation
Indices: 34093841--34093976 Score: 211
Period size: 54 Copynumber: 2.5 Consensus size: 54
34093831 GGAAGCGTCT
*
34093841 TGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCC
1 TGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTATCC
* * *
34093895 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACGTATATCTATTC
1 TGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTATCC
*
34093949 TGGTGGCTCTGCCACAA-TATCTGTATCT
1 TGGTGGCTATGCCACAATTATCTG-ATCT
34093977 CGTGACTTCG
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 6 0.08
54 70 0.92
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTATCC
Found at i:34094974 original size:16 final size:16
Alignment explanation
Indices: 34094953--34094984 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
34094943 AATGGGTTTA
*
34094953 CAAAAATGAAGATTTT
1 CAAAAATGAAAATTTT
34094969 CAAAAATGAAAATTTT
1 CAAAAATGAAAATTTT
34094985 ATAAAGATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.31
Consensus pattern (16 bp):
CAAAAATGAAAATTTT
Found at i:34098900 original size:25 final size:26
Alignment explanation
Indices: 34098870--34098975 Score: 171
Period size: 25 Copynumber: 4.2 Consensus size: 26
34098860 TGGTACAAAT
34098870 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
34098895 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34098921 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
34098946 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34098972 TGAT
1 TGAT
34098976 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
25 44 0.59
26 30 0.41
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:34098948 original size:51 final size:51
Alignment explanation
Indices: 34098870--34098975 Score: 178
Period size: 51 Copynumber: 2.1 Consensus size: 51
34098860 TGGTACAAAT
34098870 TGATAATGGGTTAGGTAAATGTTCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCATGATAATGGATTAGGTAAATATTCCA
* *
34098921 TGATAAT-GGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CATGATAATGGATTAGGTAAATATTCCA
34098972 TGAT
1 TGAT
34098976 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
50 15 0.29
51 37 0.71
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (51 bp):
TGATAATGGGTTAGGTAAATGTTCATGATAATGGATTAGGTAAATATTCCA
Found at i:34100640 original size:54 final size:54
Alignment explanation
Indices: 34100558--34100693 Score: 211
Period size: 54 Copynumber: 2.5 Consensus size: 54
34100548 TGGAGGAAGC
* * *
34100558 GTCCTGGTGGCTATGCCATAATTATCTGATCTGGTGGTTCTAGCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
34100612 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
* *
34100666 GTTCTGGTGGCTCTGCCAC-ATATATCTG
1 GTCCTGGTGGCTATGCCACAAT-TATCTG
34100694 TCCTGGCAGC
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 2 0.03
54 74 0.97
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
Found at i:34100694 original size:27 final size:27
Alignment explanation
Indices: 34100561--34100699 Score: 149
Period size: 27 Copynumber: 5.1 Consensus size: 27
34100551 AGGAAGCGTC
* * *
34100561 CTGGTGGCTATGCCATA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
* *
34100588 CTGGTGGTTCTAG-CACATATATCTGTC
1 CTGGTGGCTCT-GCCACATATATCTGTT
* *
34100615 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
*
34100642 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
*
34100669 CTGGTGGCTCTGCCACATATATCTGTC
1 CTGGTGGCTCTGCCACATATATCTGTT
34100696 CTGG
1 CTGG
34100700 CAGCCTCGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.02
27 88 0.95
28 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:34103950 original size:51 final size:51
Alignment explanation
Indices: 34103895--34104062 Score: 157
Period size: 51 Copynumber: 3.4 Consensus size: 51
34103885 CACCCTTGTA
*
34103895 ACCAAAGTTATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGCG
1 ACCAAAGTTATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATACG
* * * *
34103946 ACCAACA---ATCCT-GTACACGTAGTAGCCTACACTTAGTACTACACACATG
1 ACCAA-AGTTAT-CTAGTACACATAGTAGCCTGCACTTAGTACTACACATACG
* * * ** * *
34103995 ATCGAAGTTGTCGGGTACACATTGTAGCCTGCACTTAGTACTATACATACG
1 ACCAAAGTTATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATACG
* *
34104046 ACCTAACTT-TCTAGTAC
1 ACCAAAGTTATCTAGTAC
34104063 TACACACAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 13
0.73 0.16 0.10
Matches are distributed among these distances:
48 1 0.01
49 37 0.41
50 9 0.10
51 43 0.47
52 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (51 bp):
ACCAAAGTTATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATACG
Found at i:34109842 original size:13 final size:13
Alignment explanation
Indices: 34109824--34109854 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
34109814 GGACACAACT
34109824 GTGTGGCTTACCC
1 GTGTGGCTTACCC
34109837 GTGTGGCTTACCC
1 GTGTGGCTTACCC
34109850 GTGTG
1 GTGTG
34109855 AGGAAGTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.26, G:0.35, T:0.32
Consensus pattern (13 bp):
GTGTGGCTTACCC
Found at i:34115893 original size:12 final size:13
Alignment explanation
Indices: 34115876--34115913 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
34115866 TTCCTAGAAT
34115876 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
34115888 ATTAAGAACACATA
1 ATTAAGAACA-AGA
34115902 ATTAAGAACAAG
1 ATTAAGAACAAG
34115914 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:34118968 original size:16 final size:15
Alignment explanation
Indices: 34118944--34118973 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
34118934 AACTGTTTAA
34118944 TTACAAATTTCACTC
1 TTACAAATTTCACTC
34118959 TTACATAATTTCACT
1 TTACA-AATTTCACT
34118974 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:34119250 original size:49 final size:49
Alignment explanation
Indices: 34119178--34119414 Score: 201
Period size: 49 Copynumber: 4.7 Consensus size: 49
34119168 AAGATATCTA
34119178 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTG
* * * * *
34119227 GTACACCTAGTAGCCTGCACTTAGTACTACACACGTGATCGA-AATTGTCGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT-T--G
** * *
34119278 GTATGCATAGTAGCCTGCACTTTGTACTACACATGCGACCTAACT-ATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA-TAATTTG
* * * * * *
34119328 GTACACGTAGTAACCTGCACTTAGTATTACACACGTGACCTAAAACCATCTT-
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AATA--AT-TTG
** * *
34119380 AAACACATAGTAGCCTACACATAGTACTACACATG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATG
34119415 TGTTCTCACA
Statistics
Matches: 146, Mismatches: 32, Indels: 17
0.75 0.16 0.09
Matches are distributed among these distances:
48 4 0.03
49 38 0.26
50 36 0.25
51 34 0.23
52 31 0.21
53 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATTTG
Found at i:34119310 original size:100 final size:101
Alignment explanation
Indices: 34119183--34119365 Score: 298
Period size: 101 Copynumber: 1.8 Consensus size: 101
34119173 ATCTAGTACA
* *
34119183 CATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA-TAATTTGGTACACCTAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACT-ATCTGGTACACCTAGTAACCTGCA
34119246 CTTAGTACTACACACGTGATCGAAATTGTCGGGTATG
65 CTTAGTACTACACACGTGATCGAAATTGTCGGGTATG
* *
34119283 CATAGTAGCCTGCACTTTGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAACCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACCTAGTAACCTGCAC
*
34119348 TTAGTATTACACACGTGA
66 TTAGTACTACACACGTGA
34119366 CCTAAAACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
100 34 0.45
101 41 0.54
102 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACCTAGTAACCTGCAC
TTAGTACTACACACGTGATCGAAATTGTCGGGTATG
Found at i:34131887 original size:27 final size:27
Alignment explanation
Indices: 34131857--34131919 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
34131847 GGGGCAAAAT
*
34131857 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* *
34131884 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
*
34131911 GATAATTCT
1 GGTAATTCT
34131920 TCAACTTATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATCTC
Found at i:34141000 original size:56 final size:56
Alignment explanation
Indices: 34140928--34141047 Score: 186
Period size: 56 Copynumber: 2.1 Consensus size: 56
34140918 ATAGGATTTT
* * *
34140928 GATATGTGATTTTGATATATGTGTACGAGTAAGACCACATTTAATATGTTGGCATC
1 GATATGTGATTCTGATATATGTGTACGAGTAAGACCACATTTAATACGTTGGCACC
* * *
34140984 GATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGTACC
1 GATATGTGATTCTGATATATGTGTACGAGTAAGACCACATTTAATACGTTGGCACC
34141040 GATATGTG
1 GATATGTG
34141048 TGCCTGTAAC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (56 bp):
GATATGTGATTCTGATATATGTGTACGAGTAAGACCACATTTAATACGTTGGCACC
Found at i:34141068 original size:41 final size:41
Alignment explanation
Indices: 34141000--34141088 Score: 106
Period size: 41 Copynumber: 2.2 Consensus size: 41
34140990 TGATTCTGAT
* * * *
34141000 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGTACCG
1 ATATGTGTGCCAGTAACACCACATTTAATACGTTGGCACCG
* * * *
34141041 ATATGTGTGCCTGTAACATCACATTTAATATGTTGGCATCG
1 ATATGTGTGCCAGTAACACCACATTTAATACGTTGGCACCG
34141082 ATATGTG
1 ATATGTG
34141089 ATTCCAATTT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (41 bp):
ATATGTGTGCCAGTAACACCACATTTAATACGTTGGCACCG
Found at i:34141140 original size:97 final size:97
Alignment explanation
Indices: 34140963--34141144 Score: 260
Period size: 97 Copynumber: 1.9 Consensus size: 97
34140953 CGAGTAAGAC
** *
34140963 CACATTTAATATGTTGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTAA
1 CACATTTAATATGTTGGCATCGATATGTGATTCCAATATATGTGTGCGAGTAAGACCACGTCTAA
* *
34141028 TACGTTGGTACCGATATGTGTGCCTGTAACAT
66 GACGTTGGCACCGATATGTGTGCCTGTAACAT
*
34141060 CACATTTAATATGTTGGCATCGATATGTGATTCCAATTTATGTGTGCGAGTAAGACC-CTGTCTA
1 CACATTTAATATGTTGGCATCGATATGTGATTCCAATATATGTGTGCGAGTAAGACCAC-GTCTA
* *
34141124 GGACAG-TGGCATCGATATGTG
65 AGAC-GTTGGCACCGATATGTG
34141145 ATTACATTTA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
96 1 0.01
97 73 0.97
98 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (97 bp):
CACATTTAATATGTTGGCATCGATATGTGATTCCAATATATGTGTGCGAGTAAGACCACGTCTAA
GACGTTGGCACCGATATGTGTGCCTGTAACAT
Found at i:34147144 original size:43 final size:44
Alignment explanation
Indices: 34147071--34147153 Score: 159
Period size: 43 Copynumber: 1.9 Consensus size: 44
34147061 GGGAAATACT
34147071 TAACCAAAAATCTCTTTGCTAATTCTTGCCATGTAGATATGAAA
1 TAACCAAAAATCTCTTTGCTAATTCTTGCCATGTAGATATGAAA
34147115 TAACCAAAAATCTC-TTGCTAATTCTTGCCATGTAGATAT
1 TAACCAAAAATCTCTTTGCTAATTCTTGCCATGTAGATAT
34147154 TGAACTTGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
43 25 0.64
44 14 0.36
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (44 bp):
TAACCAAAAATCTCTTTGCTAATTCTTGCCATGTAGATATGAAA
Found at i:34152093 original size:35 final size:35
Alignment explanation
Indices: 34151991--34152151 Score: 218
Period size: 34 Copynumber: 4.6 Consensus size: 35
34151981 ATTCTCTGTT
*
34151991 TTGGTGTGTTTCGGATGGA-TAGCTCTTATGAACA
1 TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
* *
34152025 TTGGTGTGTTTTGGACGGA-TAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
*
34152059 TTGGTGTGTTTCGGATGGATTAACTCTTATGAGCA
1 TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
* * *
34152094 TTGGTGTGTTCCAGATGGATTAGCTCTTATGATCA
1 TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
* *
34152129 TCTAGTGTGTTTCGGTTGGATTA
1 T-TGGTGTGTTTCGGATGGATTA
34152152 TTAAAGTACT
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
34 48 0.43
35 46 0.41
36 17 0.15
ACGTcount: A:0.19, C:0.12, G:0.29, T:0.40
Consensus pattern (35 bp):
TTGGTGTGTTTCGGATGGATTAGCTCTTATGAGCA
Found at i:34152102 original size:69 final size:70
Alignment explanation
Indices: 34151991--34152151 Score: 218
Period size: 69 Copynumber: 2.3 Consensus size: 70
34151981 ATTCTCTGTT
* ***
34151991 TTGGTGTGTTTCGGATGGA-TAGCTCTTATGAACATTGGTGTGTTTTGGACGGA-TAGCTCTTAT
1 TTGGTGTGTTTCGGATGGATTAACTCTTATGAACATTGGTGTGTTCCAGACGGATTAGCTCTTAT
34152054 GAGCA
66 GAGCA
* *
34152059 TTGGTGTGTTTCGGATGGATTAACTCTTATGAGCATTGGTGTGTTCCAGATGGATTAGCTCTTAT
1 TTGGTGTGTTTCGGATGGATTAACTCTTATGAACATTGGTGTGTTCCAGACGGATTAGCTCTTAT
*
34152124 GATCA
66 GAGCA
* *
34152129 TCTAGTGTGTTTCGGTTGGATTA
1 T-TGGTGTGTTTCGGATGGATTA
34152152 TTAAAGTACT
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
68 19 0.23
69 28 0.35
70 15 0.19
71 19 0.23
ACGTcount: A:0.19, C:0.12, G:0.29, T:0.40
Consensus pattern (70 bp):
TTGGTGTGTTTCGGATGGATTAACTCTTATGAACATTGGTGTGTTCCAGACGGATTAGCTCTTAT
GAGCA
Found at i:34153855 original size:48 final size:47
Alignment explanation
Indices: 34153795--34154001 Score: 155
Period size: 48 Copynumber: 4.3 Consensus size: 47
34153785 TATGTATGCT
* * *
34153795 AGTGTAATACCATGTTTGGTACATGGCATTGGCAATGTTATGATTGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGC-ATGTTATGATTGCC
* * * * *
34153843 AGTGTAAGACCATGTATGGGGCATGGCATCAGCATCGATATG-TGTGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCAT-GTTATGAT-TGCC
* * * * ** **
34153891 AATGTAAGACAATGTCTGGGACATGGCGTCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CATGTTATGATTGCC
* * ** ** *
34153939 AGTGTAAGACCATGTTTGGGATAAGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TGTTATGATTGCC
34153987 AGTGTAAGACCATGT
1 AGTGTAAGACCATGT
34154002 CTAGGACAAG
Statistics
Matches: 123, Mismatches: 31, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
47 5 0.04
48 116 0.94
49 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCATGTTATGATTGCC
Found at i:34161250 original size:19 final size:20
Alignment explanation
Indices: 34161226--34161263 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
34161216 GGTACCACCA
34161226 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
34161245 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
34161264 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:34161599 original size:93 final size:93
Alignment explanation
Indices: 34161492--34161662 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
34161482 GCCCCTAAGT
* *
34161492 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34161557 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
34161585 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34161650 CGAGTTCGGATGC
66 CGAGTTCGGATGC
34161663 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:34161659 original size:46 final size:46
Alignment explanation
Indices: 34161487--34161659 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
34161477 AACCCGCCCC
* * *
34161487 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
34161533 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
34161581 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
34161626 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
34161660 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:34162115 original size:30 final size:30
Alignment explanation
Indices: 34162081--34162140 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
34162071 ATTTAATACG
34162081 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
34162111 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
34162141 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:34164044 original size:19 final size:19
Alignment explanation
Indices: 34164020--34164057 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
34164010 TCGACCACGT
34164020 TGGGCCAGAATGGGC-CGTG
1 TGGGCC-GAATGGGCTCGTG
*
34164039 TGGGCCTAATGGGCTCGTG
1 TGGGCCGAATGGGCTCGTG
34164058 AGCCCATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.13, C:0.21, G:0.45, T:0.21
Consensus pattern (19 bp):
TGGGCCGAATGGGCTCGTG
Found at i:34164407 original size:27 final size:27
Alignment explanation
Indices: 34164274--34164401 Score: 159
Period size: 27 Copynumber: 4.8 Consensus size: 27
34164264 GTTATCTGAT
* *
34164274 CGTAACACCCCTGTAAGGTAAAATGAC
1 CGTAATACCCCTGTAGGGTAAAATGAC
34164301 CGTAATACCCCTGTAGGGTAAAATGAC
1 CGTAATACCCCTGTAGGGTAAAATGAC
*
34164328 CGTAATACCCCTATAGGGTAAAATGAC
1 CGTAATACCCCTGTAGGGTAAAATGAC
** * * *
34164355 TATAAT-TCCATATAGGGTAAAATGAC
1 CGTAATACCCCTGTAGGGTAAAATGAC
* *
34164381 CGTAATACCCATGTATGGTAA
1 CGTAATACCCCTGTAGGGTAA
34164402 TCTGACGATT
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 22 0.25
27 66 0.75
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
CGTAATACCCCTGTAGGGTAAAATGAC
Found at i:34164634 original size:27 final size:27
Alignment explanation
Indices: 34164543--34164643 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 27
34164533 ATGGAGGAAG
* * *
34164543 TACTG-TACTGGTGACTAAGTCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* * *
34164569 CACGGTTACTGGTGGCTATGCCACAAT
1 TACTGTTACTGGTGGCTATGCCACATT
** *
34164596 TACTAATACTGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* **
34164623 TACTGTTTCTGGCAGCTATGC
1 TACTGTTACTGGTGGCTATGC
34164644 TGCATTATTA
Statistics
Matches: 56, Mismatches: 18, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
26 3 0.05
27 53 0.95
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTATGCCACATT
Done.