Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 109 of 349
Found at i:34167902 original size:48 final size:48
Alignment explanation
Indices: 34167814--34168150 Score: 353
Period size: 48 Copynumber: 7.0 Consensus size: 48
34167804 TGACATTGGG
* * * * *
34167814 TGATATGTGTGCTAGTGTAAGACAATG-CTTGGAACATGGCATCGGTAA
1 TGATATGAGAGCTAGTGTAAGACCATGTC-TGGGACATGGCATCGGCAA
* * * * **
34167862 TGTTATGAGAGCCAGTGTATGACCATGTCTGGGACATGGCACCGG-TG
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
* * * *
34167909 TCGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCACA
1 T-GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CA-A
* *
34167960 T--TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
* * * *
34168006 TAAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
* *
34168054 TGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-C
1 TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
* *
34168101 TCGACATGTA-AGCTAGTGTAAAACCATGTCTGGGACATGGCATCGGCAA
1 T-GATATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
34168150 T
1 T
34168151 TTAACCTCTT
Statistics
Matches: 246, Mismatches: 33, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.00
47 4 0.02
48 237 0.96
49 3 0.01
51 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAA
Found at i:34168084 original size:144 final size:144
Alignment explanation
Indices: 34167866--34168145 Score: 393
Period size: 144 Copynumber: 1.9 Consensus size: 144
34167856 CGGTAATGTT
* *** * * *
34167866 ATGAGAGCCAGTGTATGACCATGTCTGGGACATGGCACCGGTGTCGATATGTGTGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCACCGACATCGAGATGAGAGCTAGTGTAAG
* * * *
34167931 ACCATGTCTGGGACATGGCGTTGGCCAC-ATTATG-AGAGCTAGTGTAAGACCATGTCTGGGACA
66 ACCATGTCTGGGACATGGCATCGGCCACGA-CATGTA-AGCTAGTGTAAAACCATGTCTGGGACA
34167994 TGGCATCGACATTAAG
129 TGGCATCGACATTAAG
* * *
34168010 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATGAGAGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCACCGACATCGAGATGAGAGCTAGTGTAAG
*
34168075 ACCATGTCTGGGACATGGCATCGGCCTCGACATGTAAGCTAGTGTAAAACCATGTCTGGGACATG
66 ACCATGTCTGGGACATGGCATCGGCCACGACATGTAAGCTAGTGTAAAACCATGTCTGGGACATG
34168140 GCATCG
131 GCATCG
34168146 GCAATTTAAC
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
144 117 0.98
145 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (144 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCACCGACATCGAGATGAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCGGCCACGACATGTAAGCTAGTGTAAAACCATGTCTGGGACATG
GCATCGACATTAAG
Found at i:34171164 original size:22 final size:21
Alignment explanation
Indices: 34171139--34171193 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
34171129 TACAGGGCTC
**
34171139 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAA-GG
* *
34171161 ACACGCCTGTGTGACCCTAGG
1 ACACGCCCGTGTGACCCAAGG
34171182 ACACGCCCGTGT
1 ACACGCCCGTGT
34171194 TGGAGGCCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (21 bp):
ACACGCCCGTGTGACCCAAGG
Found at i:34180792 original size:49 final size:49
Alignment explanation
Indices: 34180739--34180963 Score: 270
Period size: 49 Copynumber: 4.5 Consensus size: 49
34180729 CTGGTACGCA
* * *
34180739 TAGTAGCCTGCGCATAGTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* *
34180788 TAGTAGCCTGCACTTAGGACTACACACATGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* ** * * *
34180837 TAGTAGCCTGCACTTAGTACTACACACGTGAACTAACCATCTGATACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTG-ACCAATTATCCGGTACACG
* * * * * *
34180887 TAGTAGCCTACACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
34180938 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
34180964 TGCGACCTCA
Statistics
Matches: 149, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 73 0.49
50 43 0.29
51 33 0.22
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:34180962 original size:101 final size:98
Alignment explanation
Indices: 34180726--34180963 Score: 287
Period size: 99 Copynumber: 2.4 Consensus size: 98
34180716 CAGCCAAAGC
* * * * ** *
34180726 TATCTGGTACGCATAGTAGCCTGCGCATAGTACTACACATGTGACCAATTATCCGGTACACGTAG
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACGTAG
*
34180791 TAGCCTGCACTTAGGACTACACACATGACCAAT
66 TAGCCTACACTTAGGACTACACACATGACCAAT
* * * * *
34180824 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACTAACCATCTGATACACTTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTG-ACCAACCATCCGATACACGTA
* * *
34180889 GTAGCCTACACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTACACTTAGGACTACACACATGA-C-CAAT
* *
34180925 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA
34180964 TGCGACCTCA
Statistics
Matches: 117, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 37 0.32
99 41 0.35
100 1 0.01
101 38 0.32
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (98 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACGTAG
TAGCCTACACTTAGGACTACACACATGACCAAT
Found at i:34187797 original size:37 final size:37
Alignment explanation
Indices: 34187756--34187828 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
34187746 CGTTTAATCA
34187756 AGCCATCATATTTCTAATTGGTAAAATGTGGATGTAT
1 AGCCATCATATTTCTAATTGGTAAAATGTGGATGTAT
34187793 AGCCATCATATTTCTAATTGGTAAAATGTGGATGTA
1 AGCCATCATATTTCTAATTGGTAAAATGTGGATGTA
34187829 ATTCATATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (37 bp):
AGCCATCATATTTCTAATTGGTAAAATGTGGATGTAT
Found at i:34187877 original size:21 final size:21
Alignment explanation
Indices: 34187851--34187891 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
34187841 TCAGATATCA
34187851 CCTGCTCTGAATGTTTCTAAT
1 CCTGCTCTGAATGTTTCTAAT
34187872 CCTGCTCTGAATGTTTCTAA
1 CCTGCTCTGAATGTTTCTAA
34187892 CGTATATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (21 bp):
CCTGCTCTGAATGTTTCTAAT
Found at i:34190376 original size:32 final size:32
Alignment explanation
Indices: 34190340--34190404 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
34190330 GATGGTTCTA
34190340 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
1 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
34190372 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
1 TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
34190404 T
1 T
34190405 GAGGCCGAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (32 bp):
TCTATCAATTCAGTCAGTGTCATGTTTTCGTG
Found at i:34193469 original size:38 final size:38
Alignment explanation
Indices: 34193418--34194030 Score: 822
Period size: 38 Copynumber: 16.1 Consensus size: 38
34193408 ATATTTGATG
* * *
34193418 TATATCCAGGTTTTATCCCGTAGGTTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
34193456 TATATCCGGGTTTTATTCCACAGGCTAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTA-TCC-C--GC-AGGCTTCGTGCTGGTAT
*
34193499 TATATCCGAGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* *
34193537 TATATCCGGGTTTTATCCCGCAGCCTTAGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
** *
34193575 TATATATGGGTTTTATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* * *
34193613 TATATCTGGGTTTTATCCTGCAGGCTTCGTGCT-G--C
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* *
34193648 TATATCCGGG-TTTATCCCACAGGCTTTGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
34193685 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* *
34193723 TATATTCGGGTTTTATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
** * *
34193761 TATATCTAGGTTTTATCCCGCAGGCTTCGTACTGGTGT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* * *
34193799 TATATTCGGGTTTTATCCCACAGGCTTCGTGTTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* *
34193837 TATATTCGGGTTTTATCCCGCAAGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
*
34193875 TATATCCGGGTTTTATTCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* *
34193913 TATATCCAGGTTTTATCCCGCAGGCTTCATGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* * * *
34193951 TATATTCGGG-TTTATTCCACAAGCTTCGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
* ** *
34193988 TATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
34194026 TATAT
1 TATAT
34194031 TCGAGCTTAA
Statistics
Matches: 504, Mismatches: 61, Indels: 20
0.86 0.10 0.03
Matches are distributed among these distances:
34 19 0.04
35 10 0.02
37 42 0.08
38 392 0.78
39 5 0.01
40 1 0.00
41 1 0.00
42 4 0.01
43 30 0.06
ACGTcount: A:0.16, C:0.21, G:0.24, T:0.39
Consensus pattern (38 bp):
TATATCCGGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
Found at i:34195832 original size:20 final size:21
Alignment explanation
Indices: 34195790--34195832 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
34195780 GAGGTAAAAT
*
34195790 TTATATTAGATTTTACAATTA
1 TTATATTAGATTTTAAAATTA
34195811 TTATA-TAGA-TTTAAAATATA
1 TTATATTAGATTTTAAAAT-TA
34195831 TT
1 TT
34195833 TTATGCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
20 8 0.40
21 5 0.25
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (21 bp):
TTATATTAGATTTTAAAATTA
Found at i:34199824 original size:27 final size:27
Alignment explanation
Indices: 34199786--34199840 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
34199776 AAATGTGTTT
34199786 ATTTTGATGTTTTATGGTAGAATATGA
1 ATTTTGATGTTTTATGGTAGAATATGA
34199813 ATTTTGATGTTTTATGGTAGAATATGA
1 ATTTTGATGTTTTATGGTAGAATATGA
34199840 A
1 A
34199841 GCTTGGAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (27 bp):
ATTTTGATGTTTTATGGTAGAATATGA
Found at i:34200515 original size:55 final size:53
Alignment explanation
Indices: 34200428--34200619 Score: 178
Period size: 53 Copynumber: 3.7 Consensus size: 53
34200418 ATTAGGGTTT
* * *
34200428 AAGGATACCATGTAACACCATGTCAAGACATGGCATTGATGAGTTAATATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT--CATAAGG-A
* * * *
34200484 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGA
* * * * * *
34200536 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT--TCA--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGA
* * *
34200585 AAGGATACCACGTAAGACCATGACAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
34200620 ATGGCAAGGT
Statistics
Matches: 116, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
49 31 0.27
51 2 0.02
52 4 0.03
53 40 0.34
55 35 0.30
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGA
Found at i:34200841 original size:16 final size:16
Alignment explanation
Indices: 34200820--34200850 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34200810 ATAAATTTGA
34200820 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
34200836 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
34200851 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:34203284 original size:125 final size:126
Alignment explanation
Indices: 34202970--34203476 Score: 589
Period size: 126 Copynumber: 4.1 Consensus size: 126
34202960 GTCAAGCAGG
** * * *
34202970 AACTACTGTAGAAAAAGAGTGTCCACGTGGGAACTTTTTTCAGCACTTTTG-TGATAGTGCATCC
1 AACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCC
* *
34203034 TGCTTGAAGCA-TTTTTGACACTATTTTTTCAGAACTATCTTCTCAAAATTATTTCTTCATA
66 TGCTTGAAGCAGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTT-TTCAGA
* * * * * *
34203095 AACTACTATTGAAAAAGAGCATCCATGTGCGAGCTTTTTTTAGTTCTTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCC
* * * *
34203160 TGCTTGAAGCACTTTTT-ACACTATTTTTTTAGAACCATCTTCTCAAATTTATTTTTTAGA
66 TGCTTGAAGCAGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTCAGA
** * * * *
34203220 AACTACTGTAGAAAAAGAGTGTCCACGTGAGAGCTTTTTACAGTACTTTTGCTAACAGTACATCC
1 AACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCC
* * * * * *
34203285 TACTTGAAG-TGTTTCTGACAATATTTTTTCAGAACCGTCTTCTCAAAATAAATTTTTCAGA
66 TGCTTGAAGCAGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAAT-TATTTTTCAGA
* * * * *
34203346 AACTACTGTAGAAAAAGAGCATCCATGTGGGAGCTTTTTTTAGTAGTTTTGCTGATAATGCATCC
1 AACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCC
* * * *
34203411 TGCTTGAAGC-GTTTTTGATATTATATTTTCAGAACCA---TCTCAAAATTATTTTTTCAAA
66 TGCTTGAAGCAGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTA-TTTTTCAGA
34203469 AACTACTG
1 AACTACTG
34203477 AACAAAAAAA
Statistics
Matches: 320, Mismatches: 56, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
122 1 0.00
123 25 0.08
124 4 0.01
125 135 0.42
126 150 0.47
127 5 0.02
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (126 bp):
AACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCC
TGCTTGAAGCAGTTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTCAGA
Found at i:34203412 original size:251 final size:248
Alignment explanation
Indices: 34202970--34203476 Score: 669
Period size: 251 Copynumber: 2.0 Consensus size: 248
34202960 GTCAAGCAGG
* * * * *
34202970 AACTACTGTAGAAAAAGAGTGTCCACGTGGGAACTTTTTTCAGCACTTTTGTGATAGTGCATCCT
1 AACTACTGTAGAAAAAGAGTGTCCACGTGAGAACTTTTTACAGCACTTTTGTAACAGTACATCCT
* * * * * *
34203035 GCTTGAAGCATTTTTGACACTATTTTTTCAGAACTATCTTCTCAAAATTATTTCTTCATAAACTA
66 ACTTGAAGCATTTCTGACAATATTTTTTCAGAACCATCTTCTCAAAATAATTTCTTCAGAAACTA
* * *
34203100 CTATTGAAAAAGAGCATCCATGTGCGAGCTTTTTTTAGTTCTTTTGCTGACAGTGCATCCTGCTT
131 CTATAGAAAAAGAGCATCCATGTGCGAGCTTTTTTTAGTACTTTTGCTGACAATGCATCCTGCTT
* * * *
34203165 GAAGCACTTTTT-ACACTATTTTTTTAGAACCATCTTCTCAAATTTATTTTTT-AGA
196 GAAGC-CTTTTTGACACTATATTTTCAGAACCA---TCTCAAAATTATTTTTTCAAA
* *
34203220 AACTACTGTAGAAAAAGAGTGTCCACGTGAGAGCTTTTTACAGTACTTTTGCTAACAGTACATCC
1 AACTACTGTAGAAAAAGAGTGTCCACGTGAGAACTTTTTACAGCACTTTTG-TAACAGTACATCC
** *
34203285 TACTTGAAGTGTTTCTGACAATATTTTTTCAGAACCGTCTTCTCAAAATAAATTT-TTCAGAAAC
65 TACTTGAAGCATTTCTGACAATATTTTTTCAGAACCATCTTCTCAAAAT-AATTTCTTCAGAAAC
* * * *
34203349 TACTGTAGAAAAAGAGCATCCATGTGGGAGCTTTTTTTAGTAGTTTTGCTGATAATGCATCCTGC
129 TACTATAGAAAAAGAGCATCCATGTGCGAGCTTTTTTTAGTACTTTTGCTGACAATGCATCCTGC
* * *
34203414 TTGAAGCGTTTTTGATATTATATTTTCAGAACCATCTCAAAATTATTTTTTCAAA
194 TTGAAGCCTTTTTGACACTATATTTTCAGAACCATCTCAAAATTATTTTTTCAAA
34203469 AACTACTG
1 AACTACTG
34203477 AACAAAAAAA
Statistics
Matches: 223, Mismatches: 30, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
248 16 0.07
249 10 0.04
250 52 0.23
251 141 0.63
252 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (248 bp):
AACTACTGTAGAAAAAGAGTGTCCACGTGAGAACTTTTTACAGCACTTTTGTAACAGTACATCCT
ACTTGAAGCATTTCTGACAATATTTTTTCAGAACCATCTTCTCAAAATAATTTCTTCAGAAACTA
CTATAGAAAAAGAGCATCCATGTGCGAGCTTTTTTTAGTACTTTTGCTGACAATGCATCCTGCTT
GAAGCCTTTTTGACACTATATTTTCAGAACCATCTCAAAATTATTTTTTCAAA
Found at i:34205023 original size:42 final size:42
Alignment explanation
Indices: 34204964--34205122 Score: 223
Period size: 42 Copynumber: 3.8 Consensus size: 42
34204954 TTAGGGTTAC
*
34204964 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCTATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
*
34205006 TGAGAGTT-CGTGTAAGACCATATCTGGGATATGACATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
34205048 TGAGACTT-CGTGTAAGACCATAGCTAGGCTATTGGCATCGATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
*
34205091 TGAGATTACATGTAAGACCATATCTGGGATAT
1 TGAGATTACGTGTAAGACCATATCTGGGATAT
34205123 AGGATTGGTA
Statistics
Matches: 103, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 67 0.65
43 36 0.35
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:34205105 original size:85 final size:84
Alignment explanation
Indices: 34204964--34205122 Score: 232
Period size: 85 Copynumber: 1.9 Consensus size: 84
34204954 TTAGGGTTAC
* * * *
34204964 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCTATATGAGAGTTCGTGTAAGACCATAT
1 TGAGATTACGTGTAAGACCATAGCTAGGATATGGCATCGATATGAGAGTTCATGTAAGACCATAT
34205029 CTGGGATATGACATCGATA
66 CTGGGATATGACATCGATA
*
34205048 TGAGACTT-CGTGTAAGACCATAGCTAGGCTATTGGCATCGATATGAGA-TTACATGTAAGACCA
1 TGAGA-TTACGTGTAAGACCATAGCTAGGATA-TGGCATCGATATGAGAGTT-CATGTAAGACCA
34205111 TATCTGGGATAT
63 TATCTGGGATAT
34205123 AGGATTGGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
84 27 0.40
85 40 0.60
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (84 bp):
TGAGATTACGTGTAAGACCATAGCTAGGATATGGCATCGATATGAGAGTTCATGTAAGACCATAT
CTGGGATATGACATCGATA
Found at i:34206799 original size:29 final size:29
Alignment explanation
Indices: 34206757--34206821 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
34206747 CATGGGCGTG
34206757 TGTGACCACACGCCCTGCCCACATAGGCA
1 TGTGACCACACGCCCTGCCCACATAGGCA
* *
34206786 TGTGACCACACGCCCTGCCCGCATAGGTA
1 TGTGACCACACGCCCTGCCCACATAGGCA
34206815 TGTGACC
1 TGTGACC
34206822 CCTGTTTTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.22, C:0.38, G:0.23, T:0.17
Consensus pattern (29 bp):
TGTGACCACACGCCCTGCCCACATAGGCA
Found at i:34207273 original size:42 final size:43
Alignment explanation
Indices: 34207226--34207310 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 43
34207216 TGGTAAGTAA
34207226 GATTTAAAGTGGCCCATTTTCGTAAATAAAGTAGG-AATGGGC
1 GATTTAAAGTGGCCCATTTTCGTAAATAAAGTAGGAAATGGGC
*
34207268 GATTTAAAGTGGTCCATTTTCGTAAATAAAGTAGGAAATGGGC
1 GATTTAAAGTGGCCCATTTTCGTAAATAAAGTAGGAAATGGGC
34207311 CTTTTTTAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
42 34 0.83
43 7 0.17
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (43 bp):
GATTTAAAGTGGCCCATTTTCGTAAATAAAGTAGGAAATGGGC
Found at i:34209226 original size:27 final size:27
Alignment explanation
Indices: 34209168--34209230 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
34209158 TCTACCATAT
* **
34209168 AGGGATATTACGGTCATTTTGCCCTAC
1 AGGGGTATTACGGTCATTTTGCCAAAC
34209195 AGGGGTATTACGGTCATTTT-CCAAAC
1 AGGGGTATTACGGTCATTTTGCCAAAC
*
34209221 TGGGGGTATT
1 -AGGGGTATT
34209231 TATGACTCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.33
Consensus pattern (27 bp):
AGGGGTATTACGGTCATTTTGCCAAAC
Found at i:34218754 original size:34 final size:35
Alignment explanation
Indices: 34218706--34218790 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 35
34218696 GCGAATACAT
*
34218706 TCTGGGCCTAAGCCCATATTAGTAACAGT-AACAG
1 TCTGGGCCTAAGCCCATATTAATAACAGTAAACAG
* * *
34218740 TCTGGGCCTTAGCCCATTTTAATATCAGTAAACAG
1 TCTGGGCCTAAGCCCATATTAATAACAGTAAACAG
*
34218775 TCTAGGCCTAAGCCCA
1 TCTGGGCCTAAGCCCA
34218791 CCTCAATACA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 25 0.57
35 19 0.43
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (35 bp):
TCTGGGCCTAAGCCCATATTAATAACAGTAAACAG
Found at i:34218861 original size:18 final size:18
Alignment explanation
Indices: 34218835--34218872 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
34218825 CTTAGCCCAT
34218835 TACAATAACAGTAAACAG
1 TACAATAACAGTAAACAG
*
34218853 TACAGTAACAGTAAACAG
1 TACAATAACAGTAAACAG
34218871 TA
1 TA
34218873 TGCAAGTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.13, T:0.18
Consensus pattern (18 bp):
TACAATAACAGTAAACAG
Found at i:34219226 original size:29 final size:27
Alignment explanation
Indices: 34219202--34219298 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 27
34219192 CATCACATAG
34219202 GGGCAAAACAGTCATTTTGCCTCACAA
1 GGGCAAAACAGTCATTTTGCCTCACAA
* *
34219229 GGGCAAAATAGTCATTTTGTAC-CACAA
1 GGGCAAAACAGTCATTTTG-CCTCACAA
* * * *
34219256 GGGAAAAATAGTCCTTTTACC-CACAA
1 GGGCAAAACAGTCATTTTGCCTCACAA
34219282 GGG-AAATTACAGTCATT
1 GGGCAAA--ACAGTCATT
34219299 ATATCTTATA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.05
26 9 0.15
27 46 0.78
28 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (27 bp):
GGGCAAAACAGTCATTTTGCCTCACAA
Found at i:34219241 original size:27 final size:26
Alignment explanation
Indices: 34219202--34219284 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
34219192 CATCACATAG
*
34219202 GGGCAAAACAGTCATTTTGCCTCACAA
1 GGGCAAAATAGTCATTTTGCC-CACAA
*
34219229 GGGCAAAATAGTCATTTTGTACCACAA
1 GGGCAAAATAGTCATTTTG-CCCACAA
* * *
34219256 GGGAAAAATAGTCCTTTTACCCACAA
1 GGGCAAAATAGTCATTTTGCCCACAA
34219282 GGG
1 GGG
34219285 AAATTACAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 9 0.18
27 39 0.80
28 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (26 bp):
GGGCAAAATAGTCATTTTGCCCACAA
Found at i:34219323 original size:27 final size:27
Alignment explanation
Indices: 34219281--34219358 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
34219271 TTTACCCACA
* * * *
34219281 AGGGAAATTACAGTCATTATATCTTAT
1 AGGGATATTTCAGTCATTATACCCTAT
* *
34219308 AGGGATATTTCGGTCATTTTACCCTAT
1 AGGGATATTTCAGTCATTATACCCTAT
* * *
34219335 GGGGGTATTTCAGTCATTTTACCC
1 AGGGATATTTCAGTCATTATACCC
34219359 GATTAAAGGT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGATATTTCAGTCATTATACCCTAT
Found at i:34234221 original size:30 final size:30
Alignment explanation
Indices: 34234185--34234247 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
34234175 ACTTATTTTA
34234185 TTGTTAATTTTGCTATTATTTT-GAAGGCAT
1 TTGTTAATTTTGCTATTATTTTAG-AGGCAT
*
34234215 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGCTATTATTTTAGAGGCAT
34234245 TTG
1 TTG
34234248 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.22, C:0.05, G:0.17, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGCTATTATTTTAGAGGCAT
Found at i:34235661 original size:19 final size:19
Alignment explanation
Indices: 34235634--34235703 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 19
34235624 TGTGATAACA
34235634 AATACTAAAATTTTTAATT
1 AATACTAAAATTTTTAATT
* *
34235653 AATATTAAAATTTTTAATG
1 AATACTAAAATTTTTAATT
* * * * *
34235672 GAGACCAATATTTCTAATT
1 AATACTAAAATTTTTAATT
34235691 AATACTAAAATTT
1 AATACTAAAATTT
34235704 CGAGTACAAT
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.46, C:0.07, G:0.04, T:0.43
Consensus pattern (19 bp):
AATACTAAAATTTTTAATT
Found at i:34242629 original size:42 final size:42
Alignment explanation
Indices: 34242516--34242676 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 42
34242506 GGAAAGCTCG
* * *
34242516 TACAATGCCAACGTCCCATATGTGGTCTTACATGTAATCAAA
1 TACAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAA
* *
34242558 TATCGATG-CTACTGTCCCAGACAG-GGTCTTACATGAAATCAAA
1 TA-CAATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATCAAA
* *
34242601 TACAATGCCAATGTCCCAGACGTGGTCTTACATGTAAATTATAA
1 TACAATGCCAACGTCCCAGACGTGGTCTTACATG-AAATCA-AA
* * *
34242645 GT-CGATGCCAACGTTCTAGACGTGGTCTTACA
1 -TACAATGCCAACGTCCCAGACGTGGTCTTACA
34242677 CGATAACACA
Statistics
Matches: 98, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 29 0.30
43 38 0.39
44 29 0.30
45 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (42 bp):
TACAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAA
Found at i:34249656 original size:40 final size:40
Alignment explanation
Indices: 34249597--34249858 Score: 427
Period size: 40 Copynumber: 6.6 Consensus size: 40
34249587 CAAGCTCAAT
* * * *
34249597 TGCCTTC-GGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
34249636 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
34249676 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
34249716 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
34249756 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
34249796 TACCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
34249836 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
34249859 GTATTCAAAT
Statistics
Matches: 207, Mismatches: 15, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 7 0.03
40 200 0.97
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
Found at i:34249712 original size:80 final size:80
Alignment explanation
Indices: 34249593--34249858 Score: 471
Period size: 80 Copynumber: 3.3 Consensus size: 80
34249583 ACCACAAGCT
* * * *
34249593 CAATTGCCTTC-GGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
34249657 ATATATCAACTTGCA
66 ATATATCAACTTGCA
34249672 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
34249737 ATATATCAACTTGCA
66 ATATATCAACTTGCA
*
34249752 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATACCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
34249817 ATATATCAACTTGCA
66 ATATATCAACTTGCA
*
34249832 CAAATGCCTTCGGGTCTTAGCCCGGAT
1 CAATTGCCTTCGGGTCTTAGCCCGGAT
34249859 GTATTCAAAT
Statistics
Matches: 180, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
79 11 0.06
80 169 0.94
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (80 bp):
CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
ATATATCAACTTGCA
Found at i:34258003 original size:38 final size:40
Alignment explanation
Indices: 34257918--34258177 Score: 392
Period size: 40 Copynumber: 6.7 Consensus size: 40
34257908 ACCACAAGCT
* * *
34257918 CAATTGCCTTC-GGTCTTAACCCGGGTATAGCAACTCGCA
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCA
*
34257957 CGAA-TGCCTTCGGGTCTTAG-CCGGATA-ATCAACTTGCA
1 C-AATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCA
34257995 CAATTGCCTTC-GGTC-TAGCCCGGATATATCAACTCGCA
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCA
*
34258033 CAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCA
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCA
34258073 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCA
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCA
* *
34258113 CAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCA
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCA
34258153 CAA--GCCTTCGGGTCTTAGCCCGGAT
1 CAATTGCCTTCGGGTCTTAGCCCGGAT
34258178 GTATTCAAAT
Statistics
Matches: 205, Mismatches: 9, Indels: 15
0.90 0.04 0.07
Matches are distributed among these distances:
36 3 0.01
37 13 0.06
38 59 0.29
39 18 0.09
40 112 0.55
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (40 bp):
CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCA
Found at i:34262097 original size:43 final size:42
Alignment explanation
Indices: 34262064--34262166 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 42
34262054 TTACATGTAC
*
34262064 TCAAATATCGATGCCACTGTACCAAATAG-GGTCTTACACAAAA
1 TCAAATA-CGATGCCAATGTACCAAAT-GCGGTCTTACACAAAA
* *
34262107 TCAAATACGATGCCAATGTCCCAAATGCGGTCTTACACGTAAA
1 TCAAATACGATGCCAATGTACCAAATGCGGTCTTACAC-AAAA
34262150 TCATAAGT-CGATGCCAA
1 TCA-AA-TACGATGCCAA
34262167 CGTCCCAGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
41 1 0.02
42 27 0.51
43 13 0.25
44 11 0.21
45 1 0.02
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (42 bp):
TCAAATACGATGCCAATGTACCAAATGCGGTCTTACACAAAA
Found at i:34262131 original size:42 final size:43
Alignment explanation
Indices: 34262064--34262190 Score: 134
Period size: 44 Copynumber: 2.9 Consensus size: 43
34262054 TTACATGTAC
* *
34262064 TCAAATATCGATGCCACTGTACCAAATAG-GGTCTTACAC-AAAA
1 TCAAATA-CGATGCCAATGTCCCAAAT-GCGGTCTTACACGAAAA
*
34262107 TCAAATACGATGCCAATGTCCCAAATGCGGTCTTACACGTAAA
1 TCAAATACGATGCCAATGTCCCAAATGCGGTCTTACACGAAAA
* * * *
34262150 TCATAAGT-CGATGCCAACGTCCCAGACGTGGTCTTACACGA
1 TCA-AA-TACGATGCCAATGTCCCAAATGCGGTCTTACACGA
34262191 TAACACATAT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.38
43 13 0.18
44 30 0.42
45 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (43 bp):
TCAAATACGATGCCAATGTCCCAAATGCGGTCTTACACGAAAA
Found at i:34265578 original size:21 final size:21
Alignment explanation
Indices: 34265552--34265615 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
34265542 ACTGAACGGA
34265552 TCAGCTCTTACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
*
34265573 TCAGCTCTTATGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
*
34265594 TCAGCTCATACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
34265615 T
1 T
34265616 GACTTATTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.16, C:0.27, G:0.19, T:0.39
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:34266054 original size:77 final size:77
Alignment explanation
Indices: 34265958--34266114 Score: 314
Period size: 77 Copynumber: 2.0 Consensus size: 77
34265948 TAGCGCCCAA
34265958 GTCACACTATCCAGCTTATCTCGGTAGTTTTTGAAATGTTAAATACGGTTTATATGGCATGTATA
1 GTCACACTATCCAGCTTATCTCGGTAGTTTTTGAAATGTTAAATACGGTTTATATGGCATGTATA
34266023 GGCTTTTGTATG
66 GGCTTTTGTATG
34266035 GTCACACTATCCAGCTTATCTCGGTAGTTTTTGAAATGTTAAATACGGTTTATATGGCATGTATA
1 GTCACACTATCCAGCTTATCTCGGTAGTTTTTGAAATGTTAAATACGGTTTATATGGCATGTATA
34266100 GGCTTTTGTATG
66 GGCTTTTGTATG
34266112 GTC
1 GTC
34266115 TTGGTCAAAG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 80 1.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (77 bp):
GTCACACTATCCAGCTTATCTCGGTAGTTTTTGAAATGTTAAATACGGTTTATATGGCATGTATA
GGCTTTTGTATG
Found at i:34271561 original size:42 final size:41
Alignment explanation
Indices: 34271452--34271597 Score: 129
Period size: 42 Copynumber: 3.4 Consensus size: 41
34271442 TTTTGTTATG
*
34271452 TGATTTCATGTAAGACCAC-GTCTAGGACATTGGCATCG-ACTTC
1 TGATTTCATGTAAGACC-CTGTCTGGGACA-TGGCATCGTA--TC
* *
34271495 TG-TTTTATGTATAAGACCATGTCTGGGACATCGGCATCGTATC
1 TGATTTCATG--TAAGACCCTGTCTGGGACAT-GGCATCGTATC
*
34271538 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATGAT-
1 TGATTTCATGTAAGACCCTGTCTGGGACA-TGGCATCG-T-ATC
*
34271581 TGATTACATGTAAGACC
1 TGATTTCATGTAAGACC
34271598 ACGTCTAGGA
Statistics
Matches: 86, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
42 31 0.36
43 24 0.28
44 30 0.35
45 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32
Consensus pattern (41 bp):
TGATTTCATGTAAGACCCTGTCTGGGACATGGCATCGTATC
Found at i:34271615 original size:43 final size:43
Alignment explanation
Indices: 34271452--34271616 Score: 169
Period size: 43 Copynumber: 3.8 Consensus size: 43
34271442 TTTTGTTATG
34271452 TGATTTCATGTAAGACCACGTCTAGGACATTGGCATCGACT-TC
1 TGATTTCATGTAAGACCACGTCTAGGACATTGGCATCGA-TATC
* * * *
34271495 TG-TTTTATGTATAAGACCATGTCTGGGACATCGGCATCG-TATC
1 TGATTTCATG--TAAGACCACGTCTAGGACATTGGCATCGATATC
* * *
34271538 TGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATGAT-
1 TGATTTCATGTAAGACCAC-GTCTAGGACATTGGCATCGAT-ATC
* *
34271581 TGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
1 TGATTTCATGTAAGACCACGTCTAGGACATTGGCAT
34271617 TGTATATATT
Statistics
Matches: 100, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
42 31 0.31
43 36 0.36
44 33 0.33
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (43 bp):
TGATTTCATGTAAGACCACGTCTAGGACATTGGCATCGATATC
Found at i:34273810 original size:40 final size:40
Alignment explanation
Indices: 34273755--34273972 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
34273745 CGGATGATAA
*
34273755 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* *
34273795 CCGGGCTAAGCCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
* * *
34273835 CCGGGCTAAGCCCCGAAGGAATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * *
34273875 CCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
34273915 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
* *
34273955 CC-GACTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
34273973 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 15 0.09
40 147 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:34276767 original size:225 final size:228
Alignment explanation
Indices: 34276364--34276816 Score: 646
Period size: 225 Copynumber: 2.0 Consensus size: 228
34276354 GTTGAGAACG
* *
34276364 AAACCCCTGTTTCTACAACAAATTCGGGAATTGCAAGATGATGATCCAAAGTTGACGTTCAAATG
1 AAACCCCTATTTCTACAACAAATTCGAGAATTGCAAGATGATGATCCAAAGTTGACGTTCAAATG
*
34276429 ACAGATAGTTCAGAATAATTTGAGTTCAGAGGAGAGAACAGTGTTGATGATAGTGGTACATTGCG
66 ACAGATAGTTCAGAATAATTTGAGTTCA-A-GAGAGAACAGTGTTGATGATAGTGGTACATTACG
** *
34276494 TTATCGTTATAGAATTTATGTTTCAACTAATTTAGATTTGAAAAATGATATTCTTTCTGAAGCTC
129 TTATCGCGATAGAATTTATGTTTCAACTAATTTAGATTTGAAAAATGATATACTTTCTGAAGCTC
* *
34276559 ACAGTAGCACGTACTTTATTCATCCGGGTAGCACA
194 ACAGTAGCACGTACTCTATTCATCCAGGTAGCACA
* * * *
34276594 AAACCCCTATTTCTACAACGAATTCGAGAATTTCAAGATGATGATCCAAAGTTCG-TGTTGAAAT
1 AAACCCCTATTTCTACAACAAATTCGAGAATTGCAAGATGATGATCCAAAGTT-GACGTTCAAAT
** * * *
34276658 GGTAGATAGTTTAGAATAATTTGAGTTC-A-A-AGTACAGTGTTGATGATAGTGGTACATTATGT
65 GACAGATAGTTCAGAATAATTTGAGTTCAAGAGAGAACAGTGTTGATGATAGTGGTACATTACGT
* **
34276720 TATCGCGATAGAATTTGTGTTTCGAA-TAATTTAGATTTGAAAAATGATATACTTTCTGAATTTC
130 TATCGCGATAGAATTTATGTTTC-AACTAATTTAGATTTGAAAAATGATATACTTTCTGAAGCTC
*
34276784 ACAGTAGCTCGTACTCTATTCATCCAGGTAGCA
194 ACAGTAGCACGTACTCTATTCATCCAGGTAGCA
34276817 TGAAGATGTA
Statistics
Matches: 200, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
225 114 0.57
226 3 0.01
228 1 0.00
230 81 0.41
231 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33
Consensus pattern (228 bp):
AAACCCCTATTTCTACAACAAATTCGAGAATTGCAAGATGATGATCCAAAGTTGACGTTCAAATG
ACAGATAGTTCAGAATAATTTGAGTTCAAGAGAGAACAGTGTTGATGATAGTGGTACATTACGTT
ATCGCGATAGAATTTATGTTTCAACTAATTTAGATTTGAAAAATGATATACTTTCTGAAGCTCAC
AGTAGCACGTACTCTATTCATCCAGGTAGCACA
Found at i:34286888 original size:26 final size:28
Alignment explanation
Indices: 34286851--34286904 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
34286841 ATCATAGCAC
*
34286851 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
*
34286878 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
34286905 TTTTGGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTAGAGGGGTA
Found at i:34294424 original size:40 final size:40
Alignment explanation
Indices: 34294401--34294587 Score: 304
Period size: 40 Copynumber: 4.7 Consensus size: 40
34294391 CAACTCGCAC
* * * *
34294401 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCAT
* *
34294441 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAACAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
34294481 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
34294521 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
34294561 AAATGCCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
34294588 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 136 0.97
41 4 0.03
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:34296638 original size:6 final size:6
Alignment explanation
Indices: 34296624--34296657 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
34296614 GTTTTATCTG
*
34296624 ATTTAT ATTTTT ATTTTT ATTTTT ATTTTT ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT
34296658 ATCTGTTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:34297658 original size:11 final size:11
Alignment explanation
Indices: 34297642--34297671 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
34297632 TATTTTTCTC
34297642 AAAAAAAATGA
1 AAAAAAAATGA
*
34297653 AAAAAAAGTGA
1 AAAAAAAATGA
34297664 AAAAAAAA
1 AAAAAAAA
34297672 CATTTATGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (11 bp):
AAAAAAAATGA
Found at i:34300575 original size:25 final size:25
Alignment explanation
Indices: 34300546--34300596 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
34300536 ATTATCAACA
*
34300546 TGATGTTTTAATGATTGTTTGATTT
1 TGATGTTTTAATGATTATTTGATTT
34300571 TGATGTTTTAATGATTATTTGATTT
1 TGATGTTTTAATGATTATTTGATTT
34300596 T
1 T
34300597 CATACTCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.00, G:0.18, T:0.61
Consensus pattern (25 bp):
TGATGTTTTAATGATTATTTGATTT
Found at i:34305298 original size:18 final size:18
Alignment explanation
Indices: 34305275--34305311 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
34305265 TTGCCATCGT
*
34305275 CAGGAAGACACTTGAAAC
1 CAGGAAAACACTTGAAAC
34305293 CAGGAAAACACTTGAAAC
1 CAGGAAAACACTTGAAAC
34305311 C
1 C
34305312 TTTATGATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (18 bp):
CAGGAAAACACTTGAAAC
Found at i:34311944 original size:29 final size:29
Alignment explanation
Indices: 34311900--34311957 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
34311890 TGTTAGTGAA
* *
34311900 CTTACCTGTGACCTAAATTTCTCAATCTT
1 CTTACCCGTGAACTAAATTTCTCAATCTT
34311929 CTTACCCGTGAACTAAATTTCTCAATCTT
1 CTTACCCGTGAACTAAATTTCTCAATCTT
34311958 GTTTTTTACC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.07, T:0.40
Consensus pattern (29 bp):
CTTACCCGTGAACTAAATTTCTCAATCTT
Found at i:34312372 original size:9 final size:9
Alignment explanation
Indices: 34312358--34312382 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
34312348 CGCTTTCTCT
34312358 TTTTTTTTC
1 TTTTTTTTC
34312367 TTTTTTTTC
1 TTTTTTTTC
34312376 TTTTTTT
1 TTTTTTT
34312383 GTTCCAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:34314241 original size:16 final size:17
Alignment explanation
Indices: 34314202--34314241 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
34314192 TTATTAGGAG
*
34314202 ATCTTTAATTAAAAGTC
1 ATCTTTAATTAAAAATC
*
34314219 TTCTTTAATTAAAAAT-
1 ATCTTTAATTAAAAATC
34314235 ATCTTTA
1 ATCTTTA
34314242 TGGTATTACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (17 bp):
ATCTTTAATTAAAAATC
Found at i:34322802 original size:37 final size:37
Alignment explanation
Indices: 34322752--34322825 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
34322742 CATGGTTTAA
34322752 CATTACTTCCTCTTGTTCTTCCATCTCAGTTAAGCTC
1 CATTACTTCCTCTTGTTCTTCCATCTCAGTTAAGCTC
34322789 CATTACTTCCTCTTGTTCTTCCATCTCAGTTAAGCTC
1 CATTACTTCCTCTTGTTCTTCCATCTCAGTTAAGCTC
34322826 ACTCTTCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.16, C:0.32, G:0.08, T:0.43
Consensus pattern (37 bp):
CATTACTTCCTCTTGTTCTTCCATCTCAGTTAAGCTC
Found at i:34327971 original size:29 final size:30
Alignment explanation
Indices: 34327922--34327980 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
34327912 TAGATAATAG
* *
34327922 CTTTTTTTTTCTTCTCTTTTTGTACCACAA
1 CTTTCTTTTTCCTCTCTTTTTGTACCACAA
* *
34327952 CTTTCTTTTTCCTCT-TTTTTTTATCACAA
1 CTTTCTTTTTCCTCTCTTTTTGTACCACAA
34327981 TTGTTGCTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.14, C:0.24, G:0.02, T:0.61
Consensus pattern (30 bp):
CTTTCTTTTTCCTCTCTTTTTGTACCACAA
Found at i:34330701 original size:42 final size:42
Alignment explanation
Indices: 34330633--34330715 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
34330623 TTATATTTGG
*
34330633 ATTTAAGGTAACTCAGAAATAACTAAGTTAAGTTTTTTATGT
1 ATTTAAGGGAACTCAGAAATAACTAAGTTAAGTTTTTTATGT
**
34330675 ATTTAAGGGAACTC-GAAAATGCCTAAGTTAAGTTTTTTATG
1 ATTTAAGGGAACTCAG-AAATAACTAAGTTAAGTTTTTTATG
34330716 AAGTCCAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 1 0.03
42 36 0.97
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (42 bp):
ATTTAAGGGAACTCAGAAATAACTAAGTTAAGTTTTTTATGT
Found at i:34334288 original size:40 final size:40
Alignment explanation
Indices: 34334215--34334398 Score: 255
Period size: 40 Copynumber: 4.5 Consensus size: 40
34334205 ACCCAAGTAT
* *
34334215 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
*
34334254 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
* *
34334294 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATGC
* *
34334337 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
34334377 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
34334399 CATCCGAATA
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
39 12 0.09
40 80 0.62
41 1 0.01
43 36 0.28
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:34334350 original size:83 final size:80
Alignment explanation
Indices: 34334215--34334398 Score: 280
Period size: 83 Copynumber: 2.3 Consensus size: 80
34334205 ACCCAAGTAT
* * *
34334215 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
34334279 CACTAGCACAAATGC
66 AACTAGCACAAATGC
*
34334294 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCACACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGC-A--ACTCACACAAATGCCTTCGGGACTTAGCCCGGATAT
*
34334359 AGTAACTTGCACAAATGC
63 AGTAACTAGCACAAATGC
34334377 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
34334399 CATCCGAATA
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
79 12 0.13
80 10 0.11
81 1 0.01
83 71 0.76
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGC
Found at i:34344607 original size:46 final size:46
Alignment explanation
Indices: 34344500--34344624 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
34344490 CCACATTATA
* * *
34344500 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG
1 AGAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCATCGAGACG
* * * *
34344548 AGTGCTAGTGTAAGACATGTCTAGGACATGCTTCAGCCTCGAGACG
1 AGAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCGAGACG
*
34344594 CA-AGCCAGTGTAAGACATGTCTTGGACATGC
1 -AGAGCCAGTGTAAGACATGTCTAGGACATGC
34344625 GCCGGCTACG
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
46 39 0.59
47 14 0.21
48 13 0.20
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (46 bp):
AGAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCGAGACG
Found at i:34352292 original size:46 final size:46
Alignment explanation
Indices: 34352115--34352315 Score: 180
Period size: 46 Copynumber: 4.3 Consensus size: 46
34352105 TGTGTGGGAT
* * * *
34352115 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCTACGA-GATGAGAGCC
* * * * *
34352161 AGTGTAAGACCATGTCTAGGACATGGCATCAG-TATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTA-CGAGATGAGAGCC
* *
34352209 AGTGTAAGACATGTCTGGGACATGCTTCGGCCT-CGAGATGTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGG-CTACGAGATG-AGAGCC
* *
34352255 AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGAT--GTGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGAGAGCC
34352299 AGTGTAAGACCATGTCT
1 AGTGTAAGA-CATGTCT
34352316 GAGATATGGC
Statistics
Matches: 127, Mismatches: 18, Indels: 21
0.77 0.11 0.13
Matches are distributed among these distances:
44 11 0.09
45 9 0.07
46 55 0.43
47 28 0.22
48 23 0.18
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGAGAGCC
Found at i:34368880 original size:17 final size:17
Alignment explanation
Indices: 34368860--34368892 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
34368850 ATGTGTGTCT
34368860 CAGCCGTGTGTGACACA
1 CAGCCGTGTGTGACACA
*
34368877 CAGCTGTGTGTGACAC
1 CAGCCGTGTGTGACAC
34368893 GGTCGTGTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (17 bp):
CAGCCGTGTGTGACACA
Found at i:34369972 original size:46 final size:47
Alignment explanation
Indices: 34369872--34370096 Score: 178
Period size: 46 Copynumber: 4.8 Consensus size: 47
34369862 AATGGGTTAT
* * * * *
34369872 TGTAG-GCTAGTGTAAGACATGTTTGGCACATGCATCGGCCAC-ATTA
1 TGTAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GA
*
34369918 T-AAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA
1 TGTAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA
* * * * *
34369964 CGTA-AGCCAGTGTAAAACATGTCTAGGACATGCATCGG-TTACGAAA
1 TGTAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGA
* * * * *
34370010 TG-ATAGTCAGTGTAAGACCATGTCTAGGACATGGCATC-GACTTGAGA
1 TGTAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA
* *
34370057 TAT-GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGG
1 TGTAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
34370097 TACATTACCC
Statistics
Matches: 146, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
45 4 0.03
46 83 0.57
47 52 0.36
48 7 0.05
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
TGTAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA
Found at i:34370068 original size:47 final size:45
Alignment explanation
Indices: 34369921--34370095 Score: 158
Period size: 47 Copynumber: 3.8 Consensus size: 45
34369911 CACATTATAA
* * **
34369921 GAGCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGACGT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGCATC-G-CTTGAGAAAT
* * *
34369967 AAGCCAGTGTAA-AACATGTCTAGGACATGCATCGGTT-ACGAAAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGCATCGCTTGA-GAAAT
* *
34370011 GATAGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATAT
1 G--AGCCAGTGTAAGACCATGTCTAGGACAT-GCATCG-CTTGAGAAAT
* *
34370060 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTAGGACAT-GCATCG
34370096 GTACATTACC
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 39 0.36
47 47 0.44
48 6 0.06
49 7 0.07
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGCATCGCTTGAGAAAT
Found at i:34375921 original size:31 final size:31
Alignment explanation
Indices: 34375886--34375948 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
34375876 TTGGCAAAAG
34375886 ATAAACATA-ATATGGATATAAGATGCAAATT
1 ATAAACA-AGATATGGATATAAGATGCAAATT
*
34375917 ATAAACAAGATATGGATATGAGATGCAAATT
1 ATAAACAAGATATGGATATAAGATGCAAATT
34375948 A
1 A
34375949 AATTGTGCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.51, C:0.06, G:0.16, T:0.27
Consensus pattern (31 bp):
ATAAACAAGATATGGATATAAGATGCAAATT
Found at i:34381265 original size:34 final size:35
Alignment explanation
Indices: 34381222--34381332 Score: 122
Period size: 34 Copynumber: 3.3 Consensus size: 35
34381212 ATAAATGTAT
* **
34381222 ATATATATTCACCTTT-GGTTATATTAAACTATAC
1 ATATATATTCACCTTTCGATTATACCAAACTATAC
*
34381256 ATATATATTCA-CTTTCGATTATACCAAGCTATAC
1 ATATATATTCACCTTTCGATTATACCAAACTATAC
* * *
34381290 ATATATAATCACC-TTCGATTA-AGCCAAGCCATAC
1 ATATATATTCACCTTTCGATTATA-CCAAACTATAC
34381324 ATATATATT
1 ATATATATT
34381333 TATGTACTTC
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
33 5 0.07
34 61 0.91
35 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.06, T:0.38
Consensus pattern (35 bp):
ATATATATTCACCTTTCGATTATACCAAACTATAC
Found at i:34385887 original size:19 final size:19
Alignment explanation
Indices: 34385865--34385923 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
34385855 TATTTAATCC
**
34385865 AATTTTTATTATTTATTTT
1 AATTTTTATTATAAATTTT
* *
34385884 AATTTTGATTCTAAATTTT
1 AATTTTTATTATAAATTTT
* * *
34385903 TATTTTTATTTTAAAATTT
1 AATTTTTATTATAAATTTT
34385922 AA
1 AA
34385924 GATAACTTCA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTTTTATTATAAATTTT
Found at i:34386458 original size:13 final size:13
Alignment explanation
Indices: 34386440--34386466 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34386430 TAATTAAAGG
34386440 GTTAAAATTTAAA
1 GTTAAAATTTAAA
34386453 GTTAAAATTTAAA
1 GTTAAAATTTAAA
34386466 G
1 G
34386467 ATGATAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:34386512 original size:35 final size:35
Alignment explanation
Indices: 34386467--34386533 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
34386457 AAATTTAAAG
34386467 ATGATAATCATAATTTACATAAACATTTAAAGTTT
1 ATGATAATCATAATTTACATAAACATTTAAAGTTT
*
34386502 ATGATTATCATAATTTACATAAACATTTAAAG
1 ATGATAATCATAATTTACATAAACATTTAAAG
34386534 AATAAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.39
Consensus pattern (35 bp):
ATGATAATCATAATTTACATAAACATTTAAAGTTT
Found at i:34391815 original size:40 final size:40
Alignment explanation
Indices: 34391733--34391954 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
34391723 AACCCAAGTA
* * * *
34391733 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
34391772 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
34391812 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
34391852 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
34391892 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
34391932 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
34391955 CGTTCGAATA
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 151 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:34394099 original size:43 final size:43
Alignment explanation
Indices: 34394021--34394156 Score: 130
Period size: 43 Copynumber: 3.2 Consensus size: 43
34394011 AGGGCTGTCA
* * *
34394021 CAGCGTTTGTGG-AAAAGCGCTGGTAAAGATCATGTTCTTTAG
1 CAGCATTTGTGGAAAAAGCGCCGCTAAAGATCATGTTCTTTAG
* * * * * *
34394063 TAGCATTTGTGGAAAAAGCGCCGCTAGAGTTTATGTTCTATAA
1 CAGCATTTGTGGAAAAAGCGCCGCTAAAGATCATGTTCTTTAG
* * * * *
34394106 CGGCGTTTGTAGAGAAAGCGCCGCTAAAGGTCATGTTCTTTAG
1 CAGCATTTGTGGAAAAAGCGCCGCTAAAGATCATGTTCTTTAG
*
34394149 CGGCATTT
1 CAGCATTT
34394157 ATGGGGAAAA
Statistics
Matches: 73, Mismatches: 20, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
42 10 0.14
43 63 0.86
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
CAGCATTTGTGGAAAAAGCGCCGCTAAAGATCATGTTCTTTAG
Found at i:34396096 original size:15 final size:16
Alignment explanation
Indices: 34396070--34396099 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
34396060 GTACATCGAG
34396070 CAAATAAAATTGAAAA
1 CAAATAAAATTGAAAA
34396086 CAAAT-AAATTGAAA
1 CAAATAAAATTGAAA
34396100 TGTGGTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20
Consensus pattern (16 bp):
CAAATAAAATTGAAAA
Found at i:34397280 original size:4 final size:4
Alignment explanation
Indices: 34397263--34398313 Score: 2093
Period size: 4 Copynumber: 262.8 Consensus size: 4
34397253 TATAATTCAA
*
34397263 ATAC ATAA ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397311 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397359 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397407 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397455 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397503 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397551 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397599 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397647 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397695 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397743 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397791 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397839 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397887 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397935 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34397983 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34398031 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34398079 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34398127 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34398175 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34398223 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
34398271 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
34398314 TATCACTTAT
Statistics
Matches: 1045, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 1045 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:34399753 original size:13 final size:13
Alignment explanation
Indices: 34399735--34399760 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34399725 AAGAAACGGG
34399735 TAAGAATTGAACT
1 TAAGAATTGAACT
34399748 TAAGAATTGAACT
1 TAAGAATTGAACT
34399761 CACATGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
TAAGAATTGAACT
Found at i:34401429 original size:15 final size:15
Alignment explanation
Indices: 34401396--34401429 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
34401386 ATGTGTAATA
*
34401396 ATACTAAATATATAC
1 ATACTAAATACATAC
*
34401411 ATACTAAATACATAT
1 ATACTAAATACATAC
34401426 ATAC
1 ATAC
34401430 ATAGTATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (15 bp):
ATACTAAATACATAC
Found at i:34401439 original size:21 final size:20
Alignment explanation
Indices: 34401403--34401449 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 20
34401393 ATAATACTAA
*
34401403 ATATATACATACTAAAT-AC
1 ATATATACATAATAAATAAC
34401422 ATATATACATAGTATAAATGAAC
1 ATATATACATA--ATAAAT-AAC
34401445 ATATA
1 ATATA
34401450 CAATATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 11 0.48
21 5 0.22
23 7 0.30
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.32
Consensus pattern (20 bp):
ATATATACATAATAAATAAC
Found at i:34402136 original size:12 final size:15
Alignment explanation
Indices: 34402107--34402144 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 15
34402097 ATAATAAAAT
34402107 AATAATAATAGTGAA
1 AATAATAATAGTGAA
34402122 AATAATAA-A-TG-A
1 AATAATAATAGTGAA
34402134 AATAATAATAG
1 AATAATAATAG
34402145 AAACGATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 9 0.43
13 3 0.14
14 1 0.05
15 8 0.38
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26
Consensus pattern (15 bp):
AATAATAATAGTGAA
Found at i:34402374 original size:19 final size:21
Alignment explanation
Indices: 34402342--34402396 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
34402332 TAACACTAAT
* *
34402342 AATA-TTAGAATAATAATGAC
1 AATATTTATAATAATAATAAC
34402362 AATATTTAATAATAATAATAAC
1 AATATTT-ATAATAATAATAAC
34402384 AATATTTAATAAT
1 AATATTT-ATAAT
34402397 GAAACAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 4 0.13
21 2 0.06
22 25 0.81
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (21 bp):
AATATTTATAATAATAATAAC
Found at i:34402378 original size:22 final size:22
Alignment explanation
Indices: 34402350--34402396 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
34402340 ATAATATTAG
*
34402350 AATAATAATGACAATATTTAAT
1 AATAATAATAACAATATTTAAT
34402372 AATAATAATAACAATATTTAAT
1 AATAATAATAACAATATTTAAT
34402394 AAT
1 AAT
34402397 GAAACAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (22 bp):
AATAATAATAACAATATTTAAT
Found at i:34403044 original size:18 final size:18
Alignment explanation
Indices: 34403018--34403052 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
34403008 TTGCTTGTGT
* *
34403018 AAAAGAAGAAAAGAAGAA
1 AAAAAAAGAAAAAAAGAA
34403036 AAAAAAAGAAAAAAAGA
1 AAAAAAAGAAAAAAAGA
34403053 TTTAAAGCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAAAAGAAAAAAAGAA
Found at i:34409897 original size:29 final size:28
Alignment explanation
Indices: 34409855--34410008 Score: 137
Period size: 29 Copynumber: 5.4 Consensus size: 28
34409845 CATGAGATTG
* *
34409855 GCACTAAGTGTGCAGGTTTAAATTGCATA
1 GCACTAAGTGTGCAAGTTT-AATTACATA
* *
34409884 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTTAATTACATA
* * **
34409912 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCAAGTTTAATTACAT-A
* * **
34409941 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCAAGTTTAATTACAT-A
* * *
34409970 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTTAATTACATA
*
34409998 ACACTAAGTGT
1 GCACTAAGTGT
34410009 ACGGACTTAC
Statistics
Matches: 116, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
28 42 0.36
29 74 0.64
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTTAATTACATA
Found at i:34409944 original size:57 final size:58
Alignment explanation
Indices: 34409883--34410008 Score: 211
Period size: 57 Copynumber: 2.2 Consensus size: 58
34409873 TAAATTGCAT
*
34409883 AGCACTAAGTGTGCAAGTTTGATTATAT-AGCACTAAGTGTGCGAGTTTGATTATGTA
1 AGCACTAAGTGTGCAAGTTTGATTATATAAGCACTAAGTGTGCGAGTTTGATTATATA
* *
34409940 AGCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCGAGTTTGATTATATA
1 AGCACTAAGTGTGCAAGTTTGATTATATAAGCACTAAGTGTGCGAGTTTGATTATATA
34409998 A-CACTAAGTGT
1 AGCACTAAGTGT
34410009 ACGGACTTAC
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
57 36 0.55
58 29 0.45
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (58 bp):
AGCACTAAGTGTGCAAGTTTGATTATATAAGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:34413343 original size:53 final size:53
Alignment explanation
Indices: 34413160--34413367 Score: 202
Period size: 53 Copynumber: 3.9 Consensus size: 53
34413150 CATTAGGGTT
* * * * *
34413160 TAAGGATACCAAGTAAGACCATGCCAAGGCATGAG-ATTGGTAAGTTTTACAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATG-GCAATGGTAAG-TTCATAAGG
* * * * * * *
34413214 TAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGG
* * * *
34413269 TAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
* * *
34413322 CAAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
34413368 TGAAAAGGAA
Statistics
Matches: 123, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 46 0.37
54 37 0.30
55 40 0.33
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
Found at i:34415517 original size:23 final size:23
Alignment explanation
Indices: 34415491--34415549 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
34415481 ATCGTAGGGT
*
34415491 AGCTGCTAATAGTAACGCATCAA
1 AGCTGCTAATAGTAACGCAGCAA
34415514 AGCTGCTAATAGTAACGCAGCAA
1 AGCTGCTAATAGTAACGCAGCAA
34415537 AGCTGCTAATAGT
1 AGCTGCTAATAGT
34415550 GGTAAATGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (23 bp):
AGCTGCTAATAGTAACGCAGCAA
Found at i:34423131 original size:55 final size:53
Alignment explanation
Indices: 34423064--34423193 Score: 136
Period size: 53 Copynumber: 2.4 Consensus size: 53
34423054 GCAAGTAAAT
* *
34423064 CATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCC
1 CATGTAAGACCATGTCAAGACATGGCAATGAT-AACTAC-ATAAGGCAAAGATAC
** * * * * *
34423119 CATGTAAGACCATG-CTAAGGTATGGCAATGGTGAGTTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTC-AAGACATGGCAATGATAACTACATAAGGCAAAGATAC
*
34423172 CACGTAAGACCATGTCAAGACA
1 CATGTAAGACCATGTCAAGACA
34423194 CGACAATGGT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
53 30 0.49
54 5 0.08
55 26 0.43
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAAGATAC
Found at i:34423201 original size:53 final size:53
Alignment explanation
Indices: 34423104--34423208 Score: 122
Period size: 53 Copynumber: 2.0 Consensus size: 53
34423094 ATAAACTACT
* * ** * * *
34423104 ATAAGGCAAAGATCCCATGTAAGACCATGCTAAGGTATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCATGCTAAGACACGACAATGGTAAGTTC
*
34423157 ATAAGGCAAGGATACCACGTAAGACCATG-TCAAGACACGACAATGGTAAGTT
1 ATAAGGCAAAGATACCACGTAAGACCATGCT-AAGACACGACAATGGTAAGTT
34423209 TAAAAAGGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.02
53 42 0.98
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCATGCTAAGACACGACAATGGTAAGTTC
Found at i:34423642 original size:54 final size:54
Alignment explanation
Indices: 34423579--34423687 Score: 182
Period size: 54 Copynumber: 2.0 Consensus size: 54
34423569 ATGGCATGTG
*
34423579 AATACTTGGTAATGGTTAGCTTAAGATAGCTAAATAAGAACAAGTTTTGGTATT
1 AATACTTGGTAATGATTAGCTTAAGATAGCTAAATAAGAACAAGTTTTGGTATT
* **
34423633 AATACTTGGTAATGATTAGCTTATGATAGCTAAATAAGAGGAAGTTTTGGTATT
1 AATACTTGGTAATGATTAGCTTAAGATAGCTAAATAAGAACAAGTTTTGGTATT
34423687 A
1 A
34423688 TATATGCCTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.37, C:0.06, G:0.21, T:0.36
Consensus pattern (54 bp):
AATACTTGGTAATGATTAGCTTAAGATAGCTAAATAAGAACAAGTTTTGGTATT
Found at i:34429742 original size:3 final size:3
Alignment explanation
Indices: 34429734--34429785 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
34429724 CTATGACTTG
34429734 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
34429782 TAA T
1 TAA T
34429786 TTCATGTGGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:34441995 original size:16 final size:16
Alignment explanation
Indices: 34441974--34442013 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
34441964 GTAATGTTAG
34441974 AAATAAATCAAATTGA
1 AAATAAATCAAATTGA
34441990 AAATAAATCAAATTGA
1 AAATAAATCAAATTGA
34442006 AAATAAAT
1 AAATAAAT
34442014 AATTTCATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (16 bp):
AAATAAATCAAATTGA
Found at i:34447224 original size:44 final size:43
Alignment explanation
Indices: 34447122--34447281 Score: 135
Period size: 46 Copynumber: 3.5 Consensus size: 43
34447112 GTCGATGTTG
* * * *
34447122 TGTCCCAGACAGGTCTTACACTGACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTG-CACATCT---CGTAGCCGATGCA
34447168 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
1 TGTCCCAGACATGTCTTACACT-GCACATCTCGTAGCCGATGCA
* * *
34447212 TGTCCCAGACATGTCTGACATTGGCTATCATCTC-AAGGCCGATGCA
1 TGTCCCAGACATGTCTTACACT-GC-A-CATCTCGTA-GCCGATGCA
* *
34447258 TGTCCCATACATGGTTTTACACTG
1 TGTCCCAGACAT-GTCTTACACTG
34447282 GTACAAAAAT
Statistics
Matches: 96, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 29 0.30
45 2 0.02
46 54 0.56
47 8 0.08
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (43 bp):
TGTCCCAGACATGTCTTACACTGCACATCTCGTAGCCGATGCA
Found at i:34449841 original size:12 final size:12
Alignment explanation
Indices: 34449824--34449854 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
34449814 TAAGAGTTTT
34449824 CATCTTTTGAAG
1 CATCTTTTGAAG
34449836 CATCTTTTGAAG
1 CATCTTTTGAAG
34449848 CATCTTT
1 CATCTTT
34449855 CATGGGTGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (12 bp):
CATCTTTTGAAG
Found at i:34450818 original size:34 final size:34
Alignment explanation
Indices: 34450780--34450888 Score: 139
Period size: 34 Copynumber: 3.2 Consensus size: 34
34450770 CTTGATACGG
*
34450780 TAGCAAATAATATGCTTATAATAGATCAATACAA
1 TAGCAAATAATATGCTTATAATAAATCAATACAA
* * **
34450814 TAGCAAATAATATGCTTATAACAAATCAATGCGG
1 TAGCAAATAATATGCTTATAATAAATCAATACAA
* *
34450848 TAGCAATTAATATGTTTAT-ATCAAATCAATACAA
1 TAGCAAATAATATGCTTATAAT-AAATCAATACAA
34450882 TAGCAAA
1 TAGCAAA
34450889 AGACATGCTT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
33 1 0.02
34 61 0.98
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (34 bp):
TAGCAAATAATATGCTTATAATAAATCAATACAA
Found at i:34450832 original size:68 final size:68
Alignment explanation
Indices: 34450723--34450888 Score: 181
Period size: 68 Copynumber: 2.4 Consensus size: 68
34450713 GCAATATGAC
* *** * * * * * **
34450723 ATGCTTATAACAGATCAATATGGTAGTAATTAATTTTCTTATAACAACTTGATACGGTAGCAAAT
1 ATGCTTATAATAGATCAATACAATAGCAAATAATATGCTTATAACAAATCAATACGGTAGCAAAT
34450788 AAT
66 AAT
* *
34450791 ATGCTTATAATAGATCAATACAATAGCAAATAATATGCTTATAACAAATCAATGCGGTAGCAATT
1 ATGCTTATAATAGATCAATACAATAGCAAATAATATGCTTATAACAAATCAATACGGTAGCAAAT
34450856 AAT
66 AAT
* *
34450859 ATGTTTAT-ATCAAATCAATACAATAGCAAA
1 ATGCTTATAAT-AGATCAATACAATAGCAAA
34450889 AGACATGCTT
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
67 2 0.02
68 80 0.98
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (68 bp):
ATGCTTATAATAGATCAATACAATAGCAAATAATATGCTTATAACAAATCAATACGGTAGCAAAT
AAT
Found at i:34454950 original size:40 final size:40
Alignment explanation
Indices: 34454890--34455114 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
34454880 TATTCGGATG
*
34454890 ATATCCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
34454930 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
34454973 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
34455013 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
34455053 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTT-GT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
34455092 GATATCC-GGCTAAATCCCGAAGG
1 -ATATCCGGGCTAAGTCCCGAAGG
34455115 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 15 0.09
40 109 0.67
41 1 0.01
43 37 0.23
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:34455033 original size:83 final size:80
Alignment explanation
Indices: 34454894--34455084 Score: 274
Period size: 83 Copynumber: 2.4 Consensus size: 80
34454884 CGGATGATAT
* * * *
34454894 CCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
*
34454959 TGCAAGTAGTTGCTATAC
66 TGC--G-AGTTACTATAC
* *
34454977 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
*
34455042 TGCGAGTTACTATAT
66 TGCGAGTTACTATAC
*
34455057 CCGGGTTAAGTCCCGAAGGCATTTGTGC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC
34455085 GAGTTGTGAT
Statistics
Matches: 99, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
80 36 0.36
81 1 0.01
83 62 0.63
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
TGCGAGTTACTATAC
Found at i:34456507 original size:22 final size:22
Alignment explanation
Indices: 34456482--34456526 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
34456472 GGTATCAGAG
34456482 CCAGGTTTAGTCGATTCTAGGA
1 CCAGGTTTAGTCGATTCTAGGA
34456504 CCAGGTTTAGTCGATTCTAGGA
1 CCAGGTTTAGTCGATTCTAGGA
34456526 C
1 C
34456527 TACCGTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (22 bp):
CCAGGTTTAGTCGATTCTAGGA
Found at i:34467524 original size:67 final size:70
Alignment explanation
Indices: 34467381--34467536 Score: 219
Period size: 67 Copynumber: 2.2 Consensus size: 70
34467371 ACAGAAATTA
* * * * *
34467381 CAGCGAAGCTGTCAGATATTGTGACGAAGTCACCAGATACAGATATTTATATGTGGCGAAGCCAC
1 CAGCGAGGCTGCCAGAAATTGTGACGAAGTCACCAGAAACAGA-A-TTATATGTAGCGAAGCCAC
34467446 CAGATTG
64 CAGATTG
*
34467453 CAGCGAGGCTGCCAGAAATTGTGACGAAGTCACCA-AAACAG-A-TATATGTAGCGAGGCCACCA
1 CAGCGAGGCTGCCAGAAATTGTGACGAAGTCACCAGAAACAGAATTATATGTAGCGAAGCCACCA
34467515 GATTG
66 GATTG
34467520 CAGCGAGGCTGCCAGAA
1 CAGCGAGGCTGCCAGAA
34467537 CGCTTCCTCC
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
67 40 0.51
69 1 0.01
71 5 0.06
72 32 0.41
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.19
Consensus pattern (70 bp):
CAGCGAGGCTGCCAGAAATTGTGACGAAGTCACCAGAAACAGAATTATATGTAGCGAAGCCACCA
GATTG
Found at i:34468132 original size:26 final size:27
Alignment explanation
Indices: 34468103--34468164 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
34468093 TCACACAAGT
*
34468103 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
34468129 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
*
34468156 TAGTAATTT
1 TAGTCATTT
34468165 TACCCCACAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:34468214 original size:28 final size:27
Alignment explanation
Indices: 34468158--34468275 Score: 139
Period size: 27 Copynumber: 4.3 Consensus size: 27
34468148 GGGCAAAATA
* * *
34468158 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
34468185 GTAATTCTACCCTACATGGGGTATTTCG
1 GTAATTCTACCCTACA-AGGGTATTTCG
* *
34468213 GTATTTCTACTCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
34468240 GTAATTCTATCCTAC-AGTGGTATTTCT
1 GTAATTCTACCCTACAAG-GGTATTTCG
34468267 GTAATTCTA
1 GTAATTCTA
34468276 TAACTTATCC
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.03
27 53 0.68
28 23 0.29
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCG
Found at i:34468241 original size:55 final size:54
Alignment explanation
Indices: 34468171--34468275 Score: 156
Period size: 55 Copynumber: 1.9 Consensus size: 54
34468161 ATTTTACCCC
*
34468171 ACAAGGGTATCTCGGTAATTCTACCCTACATGGGGTATTTCGGTATTTCTACTCT
1 ACAAGGGTATCTCGGTAATTCTACCCTACA-GGGGTATTTCGGTAATTCTACTCT
* * * *
34468226 ACAAGGGTATTTCGGTAATTCTATCCTACAGTGGTATTTCTGTAATTCTA
1 ACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA
34468276 TAACTTATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
54 17 0.38
55 28 0.62
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (54 bp):
ACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTCT
Found at i:34471566 original size:15 final size:15
Alignment explanation
Indices: 34471546--34471576 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34471536 GAAAATAAAA
34471546 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
34471561 GATATGTTTTGTATT
1 GATATGTTTTGGATT
34471576 G
1 G
34471577 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:34477362 original size:21 final size:21
Alignment explanation
Indices: 34477338--34477379 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
34477328 TATTTTTGAG
*
34477338 AAGGAAGTTGCTGCTGTAGAA
1 AAGGAAGTTGCTGCTGAAGAA
*
34477359 AAGGAAGTTGTTGCTGAAGAA
1 AAGGAAGTTGCTGCTGAAGAA
34477380 GAAAAAGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.33, T:0.24
Consensus pattern (21 bp):
AAGGAAGTTGCTGCTGAAGAA
Found at i:34477710 original size:14 final size:15
Alignment explanation
Indices: 34477691--34477720 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34477681 AAAATGAAAG
34477691 AAGGAGG-AGAAGAA
1 AAGGAGGAAGAAGAA
34477705 AAGGAGGAAGAAGAA
1 AAGGAGGAAGAAGAA
34477720 A
1 A
34477721 CATCATGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (15 bp):
AAGGAGGAAGAAGAA
Found at i:34479794 original size:94 final size:91
Alignment explanation
Indices: 34479629--34479839 Score: 220
Period size: 94 Copynumber: 2.3 Consensus size: 91
34479619 ATTTCGATGC
* * *
34479629 CATGTCTCAGACATGGTCTTACACT-G-ACACATCTC-GTAG-CTGATGCATGTCCAGACATGTC
1 CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCAAT-GTC-GATGCATGTCCAGACATGTC
* *
34479690 TTACATTGGCTTACGTC-TCA-A-GGCCGAAG
63 TTACACTGGC-T-C-TCATAATATGGCCGAAG
*
34479719 CATGTCCCAGGCATGTCTTACACTAGCACTCATCTCAATGTCGATGCCATGTACCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATGTCGATG-CATGT-CCAGACAT-GTC
* *
34479784 TTACACTGGCTCTCATAATATGGTCGATG
63 TTACACTGGCTCTCATAATATGGCCGAAG
34479813 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
34479840 CCACACAAGT
Statistics
Matches: 102, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
89 10 0.10
90 13 0.13
91 15 0.15
92 10 0.10
93 10 0.10
94 44 0.43
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATGTCGATGCATGTCCAGACATGTCTTA
CACTGGCTCTCATAATATGGCCGAAG
Found at i:34481888 original size:40 final size:40
Alignment explanation
Indices: 34481811--34481988 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
34481801 AAACCAAGTA
* *
34481811 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
34481850 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34481890 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
34481930 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
34481970 CCTTCGGGACTGAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34481989 TTATCATCCG
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 15 0.12
40 110 0.88
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34493358 original size:46 final size:46
Alignment explanation
Indices: 34493138--34493360 Score: 304
Period size: 46 Copynumber: 4.8 Consensus size: 46
34493128 TTTGACATGA
* * * *
34493138 TGCCATTGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGT
* *
34493184 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * *
34493230 TGCCATGGTATCTTTCAAGCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * *
34493276 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* *
34493322 AGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
34493361 TTCAGAGAGC
Statistics
Matches: 160, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 156 0.98
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
Found at i:34495199 original size:11 final size:11
Alignment explanation
Indices: 34495145--34495203 Score: 64
Period size: 11 Copynumber: 5.2 Consensus size: 11
34495135 CTTTATATAC
34495145 TAATAAAATAA
1 TAATAAAATAA
*
34495156 CAATAAAATAA
1 TAATAAAATAA
*
34495167 TAATAAAATATCT
1 TAATAAAATA--A
* *
34495180 TATTAAAATAT
1 TAATAAAATAA
34495191 TAATAAAATAA
1 TAATAAAATAA
34495202 TA
1 TA
34495204 TTTATCTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
11 31 0.77
13 9 0.22
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.32
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:34495240 original size:30 final size:31
Alignment explanation
Indices: 34495165--34495240 Score: 77
Period size: 30 Copynumber: 2.5 Consensus size: 31
34495155 ACAATAAAAT
*
34495165 AATAATAAAATATCTTATTAAAATATTAATAA
1 AATAAT-AAATATCTAATTAAAATATTAATAA
**
34495197 AATAATATTTATCTAATT-AAATAATT-ATAA
1 AATAATAAATATCTAATTAAAAT-ATTAATAA
34495227 AAT-ATCAAATATCT
1 AATAAT-AAATATCT
34495241 CTAGCGTCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
29 2 0.05
30 17 0.46
31 12 0.32
32 6 0.16
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (31 bp):
AATAATAAATATCTAATTAAAATATTAATAA
Found at i:34501450 original size:27 final size:28
Alignment explanation
Indices: 34501405--34501465 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
34501395 TATACATCAC
*
34501405 ATAGGGCCAAAATACTCATATTACCATAT
1 ATAGGGCCAAAATACTCAT-TTAACATAT
*
34501434 A-AGGG-CAAAATAGTCATTTAACATAT
1 ATAGGGCCAAAATACTCATTTAACATAT
34501460 ATAGGG
1 ATAGGG
34501466 GTCTAGGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 9 0.31
27 15 0.52
28 4 0.14
29 1 0.03
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (28 bp):
ATAGGGCCAAAATACTCATTTAACATAT
Found at i:34503966 original size:32 final size:32
Alignment explanation
Indices: 34503925--34503989 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
34503915 AGGCCGAATG
*
34503925 ATTGCTTTCTCTCTTAT-TTGCCTTGGGGTGGT
1 ATTGCTTTCTCTCTT-TCTTGCCTTGGAGTGGT
*
34503957 ATTGCTTTCTCTGTTTCTTGCCTTGGAGTGGT
1 ATTGCTTTCTCTCTTTCTTGCCTTGGAGTGGT
34503989 A
1 A
34503990 ATCATCTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 1 0.03
32 29 0.97
ACGTcount: A:0.08, C:0.18, G:0.25, T:0.49
Consensus pattern (32 bp):
ATTGCTTTCTCTCTTTCTTGCCTTGGAGTGGT
Found at i:34513310 original size:79 final size:81
Alignment explanation
Indices: 34513174--34513358 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
34513164 TTGAATGATG
* *
34513174 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
34513238 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
34513253 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
34513315 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
34513333 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34513359 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:34513372 original size:40 final size:40
Alignment explanation
Indices: 34513175--34513358 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
34513165 TGAATGATGT
* * * *
34513175 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
34513215 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
34513255 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
34513293 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34513334 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34513359 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34513380 original size:79 final size:79
Alignment explanation
Indices: 34513227--34513391 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
34513217 GGACTAAGAT
* * **
34513227 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
34513292 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
34513306 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
34513369 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34513385 CCGAAGG
1 CCGAAGG
34513392 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34521265 original size:79 final size:81
Alignment explanation
Indices: 34521129--34521313 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
34521119 TTGAATGATG
* *
34521129 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
34521193 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
34521208 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
34521270 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
34521288 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34521314 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:34521327 original size:40 final size:40
Alignment explanation
Indices: 34521130--34521313 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
34521120 TGAATGATGT
* * * *
34521130 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
34521170 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
34521210 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
34521248 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34521289 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34521314 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34521335 original size:79 final size:79
Alignment explanation
Indices: 34521182--34521346 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
34521172 GGACTAAGAT
* * **
34521182 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
34521247 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
34521261 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
34521324 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34521340 CCGAAGG
1 CCGAAGG
34521347 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34528642 original size:53 final size:54
Alignment explanation
Indices: 34528513--34528767 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 54
34528503 ACACGGGTAC
* * * *
34528513 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
34528562 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
34528615 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGTCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * *
34528670 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCCTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
34528723 CTTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 C-TTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
34528768 AAACCCTAAT
Statistics
Matches: 167, Mismatches: 28, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 49 0.29
54 9 0.05
55 67 0.40
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:34528704 original size:108 final size:110
Alignment explanation
Indices: 34528560--34528757 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
34528550 ATCCTTTTGA
* * *
34528560 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AAC-TCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCCTGCCTTA-GAAACTTCACCAA
34528623 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGT
* ** *
34528668 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCCTGCCTTAGAAACTTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCCTGCCTTAGAAACTTCACCAAT
*
34528733 TTCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
34528758 CGGTATCCTT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.61
109 6 0.08
110 24 0.30
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCCTGCCTTAGAAACTTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGT
Found at i:34532863 original size:37 final size:37
Alignment explanation
Indices: 34532804--34532941 Score: 197
Period size: 37 Copynumber: 3.7 Consensus size: 37
34532794 AGCTCAGACG
* *
34532804 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
34532841 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
34532878 TACTCCCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
34532915 TAAT-TCCCACACGTAGTCATCGGGTCT
1 AAATCT-CCACACGTAGTCATCGGGTCT
34532942 CATCCGGAAT
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
37 91 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:34533153 original size:50 final size:48
Alignment explanation
Indices: 34533099--34533280 Score: 276
Period size: 48 Copynumber: 3.8 Consensus size: 48
34533089 CATCGCCTAC
*
34533099 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAT
* * * *
34533149 ATATTTCACATT-GACCATCCGGCTTTACCACGTATGCATATCTCATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATAT
34533197 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
*
34533245 ATATTTCACATTAGCCATTCAGCTTTACCACATATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
34533281 TGCATGTTCA
Statistics
Matches: 120, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
48 80 0.67
49 2 0.02
50 38 0.32
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
Found at i:34533285 original size:98 final size:97
Alignment explanation
Indices: 34533096--34533279 Score: 300
Period size: 98 Copynumber: 1.9 Consensus size: 97
34533086 GCACATCGCC
34533096 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATATATATTTCACATT
* *
34533161 GACCATCCGGCTTTACCACGTATGCATATCTCA
65 GACCATCCAGCTTTACCACATATGCATATCTCA
*
34533194 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATATATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATTTCACATTG
*
34533257 AGCCATTCAGCTTTACCACATAT
66 A-CCATCCAGCTTTACCACATAT
34533280 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 34 0.42
98 46 0.57
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATATATATTTCACATTG
ACCATCCAGCTTTACCACATATGCATATCTCA
Found at i:34533369 original size:22 final size:22
Alignment explanation
Indices: 34533342--34533413 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
34533332 GCTCACATTC
34533342 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
34533364 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
34533388 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
34533411 ATC
1 ATC
34533414 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:34533385 original size:47 final size:47
Alignment explanation
Indices: 34533250--34533442 Score: 264
Period size: 47 Copynumber: 4.1 Consensus size: 47
34533240 CATATATATT
* * * * *
34533250 TCACATTAGCCATTCAGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
34533297 CCACATTGGCCATTCGG-CTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
34533343 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
34533390 TCACATTGGCCATTCGGCCTTATCTCATATATAC-TCATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCAT-GTTCACATTCA
34533437 TCACAT
1 TCACAT
34533443 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
46 41 0.32
47 89 0.68
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:34540152 original size:53 final size:54
Alignment explanation
Indices: 34540023--34540277 Score: 229
Period size: 55 Copynumber: 4.8 Consensus size: 54
34540013 ACACGGGTAC
* * * *
34540023 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
34540072 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCATATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
34540125 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGTCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * *
34540180 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
34540233 CTTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 C-TTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
34540278 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 47 0.28
54 9 0.05
55 68 0.41
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:34540205 original size:55 final size:53
Alignment explanation
Indices: 34540070--34540214 Score: 184
Period size: 53 Copynumber: 2.7 Consensus size: 53
34540060 ATCCTTTTGA
* *
34540070 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCATATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCATATG
* * * * *
34540123 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGTCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCC-TTGCCATAT-G
*
34540177 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATG
34540215 ATTTCATTGC
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
52 2 0.03
53 42 0.54
54 1 0.01
55 33 0.42
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCATATG
Found at i:34540214 original size:108 final size:110
Alignment explanation
Indices: 34540070--34540267 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 110
34540060 ATCCTTTTGA
* * *
34540070 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCATATG-AAC-TCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCATTGCCATA-GAAACTTCACCAA
34540133 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGT
* ** * *
34540178 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTAGAAACTTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCATTGCCATAGAAACTTCACCAAT
*
34540243 TTCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
34540268 CGGTATCCTT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.60
109 6 0.08
110 24 0.31
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCATTGCCATAGAAACTTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGT
Done.