Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 110 of 349
Found at i:34555436 original size:43 final size:43
Alignment explanation
Indices: 34555265--34555437 Score: 140
Period size: 43 Copynumber: 4.0 Consensus size: 43
34555255 CATAGAATTT
* * * *
34555265 TCGATATGTGATTTCATGTAAGACCACGTCTGGAATTTTGGAA
1 TCGATATTTGATTACATGTAAGACCACGTCTGGAATGTTGGCA
* * * * * *
34555308 TCGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGATATCGGCA
1 TCGATATT-TGA-TTACATGTAAGACCACGTCTGGAATGTTGGCA
* *
34555352 TC-ATATTTGATTTCGTGTAAGACC-CTGTCTGGGACA-G-TGGCA
1 TCGATATTTGATTACATGTAAGACCAC-GTCT-GGA-ATGTTGGCA
* *
34555394 TCGATATTTGGTTACATGTAAGACCACGTCTAGAATGTTGGCA
1 TCGATATTTGATTACATGTAAGACCACGTCTGGAATGTTGGCA
34555437 T
1 T
34555438 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 19, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 42 0.42
44 31 0.31
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCACGTCTGGAATGTTGGCA
Found at i:34560082 original size:59 final size:59
Alignment explanation
Indices: 34560008--34560125 Score: 182
Period size: 59 Copynumber: 2.0 Consensus size: 59
34559998 TACAGGCTGT
* * *
34560008 GTGGACATTCGAAATGGGAGCACATGGCCGTGTCCTAGCCCGTGTCCAACCCCGTGTAA
1 GTGGACATTCAAAATGGGAGCACATGGCCGTGTCCAAGCCCATGTCCAACCCCGTGTAA
* * *
34560067 GTGGACATTCAAAATGGGAGCCCATGGCTGTGTCCAAGCCTATGTCCAACCCCGTGTAA
1 GTGGACATTCAAAATGGGAGCACATGGCCGTGTCCAAGCCCATGTCCAACCCCGTGTAA
34560126 CTCTCTGACT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (59 bp):
GTGGACATTCAAAATGGGAGCACATGGCCGTGTCCAAGCCCATGTCCAACCCCGTGTAA
Found at i:34560383 original size:15 final size:15
Alignment explanation
Indices: 34560363--34560410 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
34560353 GTTTTATTAT
34560363 ATTTTTATGGTCTAC
1 ATTTTTATGGTCTAC
*
34560378 ATTTTTATGGAAT-TAT
1 ATTTTTATGG--TCTAC
34560394 ATTTTTATGGTCTAC
1 ATTTTTATGGTCTAC
34560409 AT
1 AT
34560411 ATCGGCATCG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
14 1 0.04
15 14 0.50
16 12 0.43
17 1 0.04
ACGTcount: A:0.25, C:0.08, G:0.12, T:0.54
Consensus pattern (15 bp):
ATTTTTATGGTCTAC
Found at i:34560397 original size:16 final size:15
Alignment explanation
Indices: 34560358--34560403 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
34560348 AATGTGTTTT
34560358 ATTATATTTTTATGG
1 ATTATATTTTTATGG
*
34560373 -TCTACATTTTTATGG
1 AT-TATATTTTTATGG
34560388 AATTATATTTTTATGG
1 -ATTATATTTTTATGG
34560404 TCTACATATC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 1 0.04
15 12 0.46
16 12 0.46
17 1 0.04
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.57
Consensus pattern (15 bp):
ATTATATTTTTATGG
Found at i:34563151 original size:40 final size:40
Alignment explanation
Indices: 34563058--34563275 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
34563048 CAGCCAAGTA
* * *
34563058 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
34563096 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34563136 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34563176 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34563216 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
34563257 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34563276 TTATCATCCA
Statistics
Matches: 163, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
38 12 0.07
39 17 0.10
40 106 0.65
41 24 0.15
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34594672 original size:25 final size:26
Alignment explanation
Indices: 34594618--34594672 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
34594608 TTTCATATTT
34594618 TATAATAAGGTTAAATATGTAATTAA
1 TATAATAAGGTTAAATATGTAATTAA
* *
34594644 -ATAAT-ATGTTAATATATGTTA-TAA
1 TATAATAAGGTTAA-ATATGTAATTAA
34594668 TATAA
1 TATAA
34594673 CATAAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (26 bp):
TATAATAAGGTTAAATATGTAATTAA
Found at i:34618349 original size:47 final size:47
Alignment explanation
Indices: 34618289--34618410 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
34618279 GCATTGGCAC
34618289 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
34618336 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
34618383 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
34618411 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:34618453 original size:54 final size:54
Alignment explanation
Indices: 34618389--34618555 Score: 230
Period size: 55 Copynumber: 3.1 Consensus size: 54
34618379 TTGGTAAGAT
* * *
34618389 AAGGATATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* *
34618443 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
** *
34618498 AAAGG-ACCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
34618551 AAGGA
1 AAGGA
34618556 TACCACGTAA
Statistics
Matches: 100, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
52 4 0.04
53 7 0.07
54 41 0.41
55 44 0.44
56 4 0.04
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:34618517 original size:55 final size:53
Alignment explanation
Indices: 34618397--34618585 Score: 227
Period size: 55 Copynumber: 3.5 Consensus size: 53
34618387 ATAAGGATAT
* * * *
34618397 CATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGG-AAC
* *
34618451 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGACC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGAAC
* *
34618506 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGA-AC
* * * *
34618559 CACGTAAGAACGTGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
34618586 ATGGTAAGTT
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 5 0.04
53 30 0.26
54 34 0.29
55 44 0.38
56 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (53 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGAAC
Found at i:34618718 original size:16 final size:17
Alignment explanation
Indices: 34618699--34618731 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
34618689 CTTATTTATT
34618699 ATTGAGATTAT-AAGTA
1 ATTGAGATTATCAAGTA
34618715 ATTGAGATTATCAAGTA
1 ATTGAGATTATCAAGTA
34618732 TTAAGTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.36
Consensus pattern (17 bp):
ATTGAGATTATCAAGTA
Found at i:34630204 original size:44 final size:44
Alignment explanation
Indices: 34630156--34630538 Score: 320
Period size: 44 Copynumber: 8.7 Consensus size: 44
34630146 GCGTTTACAA
*
34630156 GGAGCAGATCGAAGATAGCAGATTTGACGTCTCTGTATTGTCAG
1 GGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
*
34630200 GGAGCAGATCGAAGATAGCTA-ATTTGGCGTCTTTGTATTGTCAG
1 GGAGCAGATCGAAGATAGC-AGATTTGGCGTCTCTGTATTGTCAG
* * * ** * ** *
34630244 AGAACAAATCGAAGA-AATAGATTTGGCATCTCCATATTCGAC-G
1 GGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATT-GTCAG
* ** * * *
34630287 GAGAGCAGATCGAAGACATAGCAGATCTAACCT-TCGGATGT-TTTTGCATT
1 G-GAGCAGATCGAAG--ATAGCAGATTTGGCGTCTC---TGTATTGT-CA-G
* * * ** *
34630337 GAAGCAGATCCAAGAT----GATTTGGCATC-CTTGCGTT-TACAA
1 GGAGCAGATCGAAGATAGCAGATTTGGCGTCTC-TGTATTGT-CAG
*
34630377 GGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
1 GGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
* *
34630421 GGAGCAGATCGAAGATAGCTGATTTGGCATCTCTGTATTGTCAG
1 GGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
*
34630465 GGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTGTCAG
1 GGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
* *
34630509 GGAGCAGATCGGAGATAACAGATTTGGCGT
1 GGAGCAGATCGAAGATAGCAGATTTGGCGT
34630539 TCTTGAATTT
Statistics
Matches: 268, Mismatches: 50, Indels: 42
0.74 0.14 0.12
Matches are distributed among these distances:
40 14 0.05
41 5 0.02
42 3 0.01
43 23 0.09
44 191 0.71
45 3 0.01
46 3 0.01
47 10 0.04
48 3 0.01
49 12 0.04
50 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (44 bp):
GGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGTCAG
Found at i:34630394 original size:221 final size:222
Alignment explanation
Indices: 34629996--34630519 Score: 793
Period size: 221 Copynumber: 2.4 Consensus size: 222
34629986 ATCAAAGATG
34629996 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGAC
1 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGAC
* * *
34630061 GGAGAGCAGATTGAAGGCATAACAAATCTAACCTTCAGATTTTTTTTTTTGCATCGAAACAGATC
66 GGAGAGCAGATCGAAGACATAACAAATCTAACCTTCAGA---TTGTTTTTGCATCGAAACAGATC
*
34630126 CAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGATAGCAGATTTGACGTCTCTG
128 CAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCAAAGATAGCAGATTTGACGTCTCTG
34630191 TATTGTCAGGGAGCAGATCGAAGATAGCTA
193 TATTGTCAGGGAGCAGATCGAAGATAGCTA
* * *
34630221 ATTTGGCGTCTTTGTATTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGAC
1 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGAC
* * * * *
34630286 GGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGA-TGTTTTTGCATTGAAGCAGATCCAA
66 GGAGAGCAGATCGAAGACATAACAAATCTAACCTTCAGATTGTTTTTGCATCGAAACAGATCCAA
*
34630350 GATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTAT
131 GATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCAAAGATAGCAGATTTGACGTCTCTGTAT
*
34630415 TGTCAGGGAGCAGATCGAAGATAGCTG
196 TGTCAGGGAGCAGATCGAAGATAGCTA
* * * * * * *
34630442 ATTTGGCATCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATT-GT
1 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGA-AACAGATTTGGCATCTCCATATTCGA
34630506 CAGG-GAGCAGATCG
65 C-GGAGAGCAGATCG
34630520 GAGATAACAG
Statistics
Matches: 273, Mismatches: 24, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
221 156 0.57
222 21 0.08
225 96 0.35
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (222 bp):
ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGAC
GGAGAGCAGATCGAAGACATAACAAATCTAACCTTCAGATTGTTTTTGCATCGAAACAGATCCAA
GATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCAAAGATAGCAGATTTGACGTCTCTGTAT
TGTCAGGGAGCAGATCGAAGATAGCTA
Found at i:34630559 original size:88 final size:88
Alignment explanation
Indices: 34630379--34630571 Score: 246
Period size: 88 Copynumber: 2.2 Consensus size: 88
34630369 GTTTACAAGG
* * * *
34630379 AGCAGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATAGCTGAT
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTGTCAGGGAGCAGATCGAAGATAACAGAT
* **
34630444 TTGGCATCTCTGTATTGTCAGGG
66 TTGGCATCTCTGAATTGTCAGAA
*
34630467 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTGTCAGGGAGCAGATCGGAGATAACAGAT
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTGTCAGGGAGCAGATCGAAGATAACAGAT
* *
34630532 TTGGCGT-TCTTGAATTTGTGA-AA
66 TTGGCATCTC-TGAA-TTGTCAGAA
* *
34630555 AGCAGGTTGAAGATAGC
1 AGCAGATCGAAGATAGC
34630572 TAGTTTTCAA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
87 2 0.02
88 84 0.92
89 5 0.05
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (88 bp):
AGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTGTCAGGGAGCAGATCGAAGATAACAGAT
TTGGCATCTCTGAATTGTCAGAA
Found at i:34630721 original size:14 final size:14
Alignment explanation
Indices: 34630702--34630737 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
34630692 ACAGTCCCAT
34630702 AAATAAATAAAAAC
1 AAATAAATAAAAAC
34630716 AAATAAA-AAAAAC
1 AAATAAATAAAAAC
*
34630729 AAAAAAATA
1 AAATAAATA
34630738 TAACAGTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (14 bp):
AAATAAATAAAAAC
Found at i:34632162 original size:12 final size:12
Alignment explanation
Indices: 34632148--34632204 Score: 51
Period size: 12 Copynumber: 4.5 Consensus size: 12
34632138 TTATTTTTAT
*
34632148 TATTATACATTT
1 TATTATACATTA
*
34632160 TATTTATAAATTA
1 TA-TTATACATTA
*
34632173 TATCATACATTA
1 TATTATACATTA
*
34632185 TATTTTACTATATA
1 TATTATAC-AT-TA
34632199 TATTAT
1 TATTAT
34632205 TCCTTACATT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
12 16 0.46
13 12 0.34
14 7 0.20
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (12 bp):
TATTATACATTA
Found at i:34632383 original size:23 final size:21
Alignment explanation
Indices: 34632342--34632394 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
34632332 TATATGATAG
*
34632342 TATTTATATTTCATTATATTT
1 TATTTATATTTCATTATATTA
34632363 TATTTATATATT-ATTACATATTA
1 TATTTATAT-TTCATT--ATATTA
34632386 TATTT-TATT
1 TATTTATATT
34632395 ATATATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 13 0.46
22 5 0.18
23 10 0.36
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (21 bp):
TATTTATATTTCATTATATTA
Found at i:34632388 original size:17 final size:17
Alignment explanation
Indices: 34632366--34632403 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
34632356 TATATTTTAT
34632366 TTATATATTATTACATA
1 TTATATATTATTACATA
* *
34632383 TTATATTTTATTATATA
1 TTATATATTATTACATA
34632400 TTAT
1 TTAT
34632404 TCCTTATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATATATTATTACATA
Found at i:34632394 original size:10 final size:10
Alignment explanation
Indices: 34632345--34632404 Score: 54
Period size: 10 Copynumber: 6.2 Consensus size: 10
34632335 ATGATAGTAT
*
34632345 TTATATTTCA
1 TTATATTTTA
34632355 TTATATTTTA
1 TTATATTTTA
*
34632365 TTTATATATTA
1 -TTATATTTTA
*
34632376 TTACA---TA
1 TTATATTTTA
34632383 TTATATTTTA
1 TTATATTTTA
*
34632393 TTATATATTA
1 TTATATTTTA
34632403 TT
1 TT
34632405 CCTTATAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
7 6 0.15
10 26 0.63
11 9 0.22
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (10 bp):
TTATATTTTA
Found at i:34632415 original size:27 final size:28
Alignment explanation
Indices: 34632357--34632415 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
34632347 ATATTTCATT
*
34632357 ATATTTTATTTATATATTATTACATATT
1 ATATTTTATTTATATATTATTACATATA
* *
34632385 ATATTTTA-TTATATATTATTCCTTATA
1 ATATTTTATTTATATATTATTACATATA
34632412 ATAT
1 ATAT
34632416 CTTCCTCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 20 0.71
28 8 0.29
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (28 bp):
ATATTTTATTTATATATTATTACATATA
Found at i:34636811 original size:28 final size:30
Alignment explanation
Indices: 34636750--34636811 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 30
34636740 AATAAACATT
* *
34636750 GTTGAATTTGAATTTGTATGATTTTTATAT
1 GTTGAATTTGAATTTGTATGATTTCTATAG
34636780 GTTGAATTT-AA-TTGTATGGATTTCTAT-G
1 GTTGAATTTGAATTTGTAT-GATTTCTATAG
34636808 GTTG
1 GTTG
34636812 GAGCCGAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 10 0.34
29 10 0.34
30 9 0.31
ACGTcount: A:0.24, C:0.02, G:0.21, T:0.53
Consensus pattern (30 bp):
GTTGAATTTGAATTTGTATGATTTCTATAG
Found at i:34636951 original size:42 final size:43
Alignment explanation
Indices: 34636904--34637015 Score: 176
Period size: 41 Copynumber: 2.7 Consensus size: 43
34636894 TAACAGTGAT
34636904 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTA-TG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATTG
34636946 ATATCAGGCTTATTGCCTAGCAGGCTTT-ATGCCGGTGTATTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATTG
* * *
34636988 A-ATCAAGTTTATTACCTAGCAGGCTTTG
1 ATATCAGGCTTATTGCCTAGCAGGCTTTG
34637016 TACGGTGTTT
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
41 34 0.52
42 31 0.48
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (43 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTGATGCCGGTGTATTG
Found at i:34640186 original size:29 final size:29
Alignment explanation
Indices: 34640128--34640284 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
34640118 ATAGTAAGTC
*
34640128 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
34640156 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
34640185 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
34640214 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
34640242 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
34640271 CGCACACTTAGTGC
1 CGCACACTTAGTGC
34640285 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:34640235 original size:57 final size:58
Alignment explanation
Indices: 34640128--34640284 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
34640118 ATAGTAAGTC
*
34640128 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
34640185 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
34640242 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
34640285 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:34648077 original size:28 final size:28
Alignment explanation
Indices: 34648045--34648172 Score: 157
Period size: 29 Copynumber: 4.5 Consensus size: 28
34648035 ATAGTAAGTC
*
34648045 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
34648073 CGCACACTTAATGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
*
34648102 CGCACACTTAGTGCTATATAATTAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
34648130 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
34648159 CGCACACTTAGTGC
1 CGCACACTTAGTGC
34648173 CGAAATCTAC
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 42 0.48
29 45 0.52
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:34648135 original size:57 final size:57
Alignment explanation
Indices: 34648044--34648172 Score: 170
Period size: 57 Copynumber: 2.3 Consensus size: 57
34648034 TATAGTAAGT
*
34648044 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAATGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAATGCTATACA-AATCAAAC
* * * * * * *
34648101 TCGCACACTTAGTGCTATATAATTAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAATGCTATACAAATCAAAC
34648158 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
34648173 CGAAATCTAC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 59 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAATGCTATACAAATCAAAC
Found at i:34650082 original size:47 final size:47
Alignment explanation
Indices: 34650029--34650144 Score: 196
Period size: 47 Copynumber: 2.5 Consensus size: 47
34650019 GCACTAAGGT
34650029 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
* * *
34650076 AAGGATACCATGTAAGACTATGTTTGGAACATGGCATTTGGTAATAT
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
*
34650123 AAGGATATCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
34650145 CCAAGGCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
Found at i:34650252 original size:55 final size:54
Alignment explanation
Indices: 34650131--34650319 Score: 229
Period size: 55 Copynumber: 3.5 Consensus size: 54
34650121 ATAAGGATAT
* * ** *
34650131 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAAGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTAC
* *
34650185 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGCAAAGGTAC
* * *
34650240 CATGTAAGACCATACCAAGGCATGGCATTGGTGAGTTC-ATAAGGC-AAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGG-TAC
* * *
34650293 CACGTAAGACCATGTCAAGATATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
34650320 ATGGTAAGTT
Statistics
Matches: 116, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
52 4 0.03
53 31 0.27
54 35 0.30
55 46 0.40
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAAGGTAC
Found at i:34652056 original size:24 final size:24
Alignment explanation
Indices: 34652029--34652126 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
34652019 AAGGCTGTCA
34652029 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
34652053 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
34652077 GGAGAGGATTTAGGAGATGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
34652101 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
34652126 G
1 G
34652127 AGCAGGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 64 0.96
25 3 0.04
ACGTcount: A:0.37, C:0.04, G:0.39, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:34652270 original size:21 final size:21
Alignment explanation
Indices: 34652237--34652284 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
34652227 ACCATTCTCC
34652237 TCTTCTTT--CTTTTCTCCTTT
1 TCTTCTTTAACTTTT-TCCTTT
*
34652257 TC-TCTTTAACTTTTTCTTTT
1 TCTTCTTTAACTTTTTCCTTT
34652277 TCTTCTTT
1 TCTTCTTT
34652285 TCCTCCATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 5 0.21
20 9 0.38
21 10 0.42
ACGTcount: A:0.04, C:0.25, G:0.00, T:0.71
Consensus pattern (21 bp):
TCTTCTTTAACTTTTTCCTTT
Found at i:34659996 original size:24 final size:24
Alignment explanation
Indices: 34659963--34660060 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
34659953 AAGGCTATCA
34659963 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
34659987 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
34660011 GGAGAGGATTTAGGAGCTAATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
34660035 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
34660060 G
1 G
34660061 AGCAGGAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 64 0.96
25 3 0.04
ACGTcount: A:0.37, C:0.05, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:34661742 original size:33 final size:34
Alignment explanation
Indices: 34661669--34661749 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
34661659 TATGGGCCAT
* *
34661669 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTAATCTGAATAAGGGGCTAAGGCCCAGTTC
* **
34661703 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTAATCTGAATAAGGGGCTAAGGCCCAGT-TC
34661736 ACTGTAATCTGAAT
1 ACTGTAATCTGAAT
34661750 GGGCTTAGGC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
32 13 0.33
33 15 0.38
34 11 0.28
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (34 bp):
ACTGTAATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:34661761 original size:32 final size:32
Alignment explanation
Indices: 34661675--34661761 Score: 88
Period size: 32 Copynumber: 2.7 Consensus size: 32
34661665 CCATACTGTT
* *
34661675 ATCTGAATAAGGGGCTAAGGCCCAGTTTAATGTA
1 ATCTGAA-AA-GGGCTTAGGCCCAGTTCAATGTA
*
34661709 ATCTGAAAAGGGCTCT-GGCCCAGTATCACTGTA
1 ATCTGAAAAGGGCT-TAGGCCCAGT-TCAATGTA
*
34661742 ATCTG-AATGGGCTTAGGCCC
1 ATCTGAAAAGGGCTTAGGCCC
34661762 GATGGGCTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
31 1 0.02
32 25 0.54
33 13 0.28
34 7 0.15
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (32 bp):
ATCTGAAAAGGGCTTAGGCCCAGTTCAATGTA
Found at i:34662544 original size:25 final size:25
Alignment explanation
Indices: 34662510--34662560 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
34662500 TGAATGGATG
34662510 TAAAAAAATTAATTTTAAAAGCAAA
1 TAAAAAAATTAATTTTAAAAGCAAA
*
34662535 TAAACAAATTAATTTTAAAAGCAAA
1 TAAAAAAATTAATTTTAAAAGCAAA
34662560 T
1 T
34662561 TTTATGCCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.29
Consensus pattern (25 bp):
TAAAAAAATTAATTTTAAAAGCAAA
Found at i:34664444 original size:55 final size:55
Alignment explanation
Indices: 34664365--34664499 Score: 162
Period size: 55 Copynumber: 2.5 Consensus size: 55
34664355 GTGCCTTTAG
* * * ** * *
34664365 CCCGTGTGCAACACTGACTTTAAAACATGGCCATGTGACACACCTGTGTGGCCTT
1 CCCGTGTACAACACTGACTTTAAAACACGACCATGACACACACCCGTGTGGCCTA
* * *
34664420 CTCGTGTACAACATTGACTTTAAAACACGACCATGACACACTCCCGTGTGGCCTA
1 CCCGTGTACAACACTGACTTTAAAACACGACCATGACACACACCCGTGTGGCCTA
* *
34664475 CCCATGTACAGCACTGACTTTAAAA
1 CCCGTGTACAACACTGACTTTAAAA
34664500 TTTTAAGTGC
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (55 bp):
CCCGTGTACAACACTGACTTTAAAACACGACCATGACACACACCCGTGTGGCCTA
Found at i:34665378 original size:47 final size:46
Alignment explanation
Indices: 34665313--34665438 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 46
34665303 TATACGTGCT
*
34665313 GATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCGTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCAACGCC
* * * *
34665360 GATGTATGTCCCAAACATGTCTTACACT-ACACTCATCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAACGCC
34665405 GATGCCATGTCCCAGACATGTCTTACACTGGCAC
1 GATG-CATGTCCCAGACATGTCTTACACTGGCAC
34665439 ACTAGTAATC
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
45 11 0.16
46 28 0.41
47 29 0.43
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCAACGCC
Found at i:34665418 original size:46 final size:47
Alignment explanation
Indices: 34665313--34665434 Score: 160
Period size: 46 Copynumber: 2.6 Consensus size: 47
34665303 TATACGTGCT
* *
34665313 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCGTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGACTATCATCGTCAACGCC
* * *
34665360 GATGTATGTCCCAAACATGTCTTACACT-AC-ACTCATC-TCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGACTA-TCATCGTCAACGCC
34665405 GATGCCATGTCCCAGACATGTCTTACACTG
1 GATG-CATGTCCCAGACATGTCTTACACTG
34665435 GCACACTAGT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
45 11 0.17
46 28 0.43
47 26 0.40
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTATCATCGTCAACGCC
Found at i:34679138 original size:38 final size:38
Alignment explanation
Indices: 34679080--34679342 Score: 249
Period size: 38 Copynumber: 6.9 Consensus size: 38
34679070 ACACCTGGCC
* * *
34679080 GGCTTTGTGCCTGTGTTATTCAAGCTTTGAGCCTAGCA
1 GGCTTTGTGCCGGTGTTATTCAAGCTCTGTGCCTAGCA
* * * * *
34679118 GGCTTTGTGCTGGAGATATTCAGGCTCCGTGCCTAGCA
1 GGCTTTGTGCCGGTGTTATTCAAGCTCTGTGCCTAGCA
** ** * *
34679156 GGCTTCATGCCGGTGTTATTCTGGCTCTGTGTCTAGTA
1 GGCTTTGTGCCGGTGTTATTCAAGCTCTGTGCCTAGCA
* *
34679194 GG-TTTGTTCCGGTGTTATTCGAGCTCTGTGCCTAGCA
1 GGCTTTGTGCCGGTGTTATTCAAGCTCTGTGCCTAGCA
* *
34679231 GGCTTTGTGCCGGTGTTATTCCAGCTTTGTGCCTAGCA
1 GGCTTTGTGCCGGTGTTATTCAAGCTCTGTGCCTAGCA
* * * ** *
34679269 AGCTTTATGCCGGTGATATTCGGGCTCTGTGCCTAGTA
1 GGCTTTGTGCCGGTGTTATTCAAGCTCTGTGCCTAGCA
* * * ** *
34679307 GGCTCTATGCTGGTGACATTCGAGCTCTGTGCCTAG
1 GGCTTTGTGCCGGTGTTATTCAAGCTCTGTGCCTAG
34679343 TAAGCTTTTT
Statistics
Matches: 185, Mismatches: 39, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
37 30 0.16
38 155 0.84
ACGTcount: A:0.13, C:0.22, G:0.29, T:0.35
Consensus pattern (38 bp):
GGCTTTGTGCCGGTGTTATTCAAGCTCTGTGCCTAGCA
Found at i:34679281 original size:113 final size:114
Alignment explanation
Indices: 34679080--34679342 Score: 323
Period size: 113 Copynumber: 2.3 Consensus size: 114
34679070 ACACCTGGCC
* * * * *
34679080 GGCTTTGTGCCTGTGTTATTCAAGCTTTGAGCCTAGCAGGCTTTGTGCTGGAGATATTCAGGCTC
1 GGCTTTGTGCCGGTGTTATTCGAGCTCTGTGCCTAGCAGGCTTTGTGCCGGAGATATTCAGGCTC
* * * *
34679145 CGTGCCTAGCAGGCTTCATGCCGGTGTTATTCTGGCTCTGTGTCTAGTA
66 CGTGCCTAGCAAGCTTCATGCCGGTGATATTCGGGCTCTGTGCCTAGTA
* * *
34679194 GG-TTTGTTCCGGTGTTATTCGAGCTCTGTGCCTAGCAGGCTTTGTGCCGGTGTTATTCCA-GCT
1 GGCTTTGTGCCGGTGTTATTCGAGCTCTGTGCCTAGCAGGCTTTGTGCCGGAGATATT-CAGGCT
** *
34679257 TTGTGCCTAGCAAGCTTTATGCCGGTGATATTCGGGCTCTGTGCCTAGTA
65 CCGTGCCTAGCAAGCTTCATGCCGGTGATATTCGGGCTCTGTGCCTAGTA
* * * **
34679307 GGCTCTATGCTGGTGACATTCGAGCTCTGTGCCTAG
1 GGCTTTGTGCCGGTGTTATTCGAGCTCTGTGCCTAG
34679343 TAAGCTTTTT
Statistics
Matches: 126, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
113 95 0.75
114 31 0.25
ACGTcount: A:0.13, C:0.22, G:0.29, T:0.35
Consensus pattern (114 bp):
GGCTTTGTGCCGGTGTTATTCGAGCTCTGTGCCTAGCAGGCTTTGTGCCGGAGATATTCAGGCTC
CGTGCCTAGCAAGCTTCATGCCGGTGATATTCGGGCTCTGTGCCTAGTA
Found at i:34685004 original size:17 final size:18
Alignment explanation
Indices: 34684982--34685016 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
34684972 AATCTGTGTG
*
34684982 GGGCCCACGA-GCCCATT
1 GGGCCCACAAGGCCCATT
34684999 GGGCCCACAAGGCCCATT
1 GGGCCCACAAGGCCCATT
34685017 TCGGTCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.20, C:0.40, G:0.29, T:0.11
Consensus pattern (18 bp):
GGGCCCACAAGGCCCATT
Found at i:34687266 original size:28 final size:28
Alignment explanation
Indices: 34687235--34687290 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
34687225 TGTAAAAATG
34687235 ACCAAATTGCATGAAATAAATAATTTTA
1 ACCAAATTGCATGAAATAAATAATTTTA
34687263 ACCAAATTGCATGAAATAAATAATTTTA
1 ACCAAATTGCATGAAATAAATAATTTTA
34687291 CTCTATAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.32
Consensus pattern (28 bp):
ACCAAATTGCATGAAATAAATAATTTTA
Found at i:34687586 original size:16 final size:16
Alignment explanation
Indices: 34687565--34687600 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
34687555 CGGTGATATT
34687565 CAGGCTCTGTGCCCAG
1 CAGGCTCTGTGCCCAG
*
34687581 CAGGCTCTGTGCCTAG
1 CAGGCTCTGTGCCCAG
34687597 CAGG
1 CAGG
34687601 ATTTGTGCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.33, G:0.33, T:0.19
Consensus pattern (16 bp):
CAGGCTCTGTGCCCAG
Found at i:34687607 original size:16 final size:16
Alignment explanation
Indices: 34687565--34687609 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
34687555 CGGTGATATT
*
34687565 CAGGCTCTGTGCCCAG
1 CAGGATCTGTGCCCAG
* *
34687581 CAGGCTCTGTGCCTAG
1 CAGGATCTGTGCCCAG
*
34687597 CAGGATTTGTGCC
1 CAGGATCTGTGCC
34687610 AGTTTTATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.13, C:0.31, G:0.31, T:0.24
Consensus pattern (16 bp):
CAGGATCTGTGCCCAG
Found at i:34687619 original size:54 final size:54
Alignment explanation
Indices: 34687534--34687644 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 54
34687524 ATTCAAGCTT
* * * *
34687534 TGTGCCTAGCAGGCTTTGTGTCGGTGATATTCAGGCTCTGTGCCCAGCAGGCTC
1 TGTGCCTAGCAGGATTTGTGCCAGTGATATTCAAGCTCTGTGCCCAGCAGGCTC
** * *
34687588 TGTGCCTAGCAGGATTTGTGCCAGTTTTATTCAAGCTCTGTGCCTAGTAGGCTC
1 TGTGCCTAGCAGGATTTGTGCCAGTGATATTCAAGCTCTGTGCCCAGCAGGCTC
34687642 TGT
1 TGT
34687645 TTCGATGTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.14, C:0.23, G:0.29, T:0.33
Consensus pattern (54 bp):
TGTGCCTAGCAGGATTTGTGCCAGTGATATTCAAGCTCTGTGCCCAGCAGGCTC
Found at i:34687656 original size:38 final size:38
Alignment explanation
Indices: 34687584--34687758 Score: 131
Period size: 38 Copynumber: 4.6 Consensus size: 38
34687574 TGCCCAGCAG
* * * *
34687584 GCTCTGTGCCTAGCAGGATTTGTG-CCAGTTTTATTCAA
1 GCTCTGTGCCTAGCAGGCTCTGTGTCGA-TGTTATTCAA
* * **
34687622 GCTCTGTGCCTAGTAGGCTCTGTTTCGATGTTATTTGA
1 GCTCTGTGCCTAGCAGGCTCTGTGTCGATGTTATTCAA
* * * * * *
34687660 GCTCTGTGCCTAGCAAGCTATGTGTCGGTGATATCCAG
1 GCTCTGTGCCTAGCAGGCTCTGTGTCGATGTTATTCAA
* * *
34687698 GCTCTGTGCCTAGCAGGCT-TCGTGCCAATGTTATTC-G
1 GCTCTGTGCCTAGCAGGCTCT-GTGTCGATGTTATTCAA
* *
34687735 GATTCTGTGCCTAGTAGGCTCTGT
1 G-CTCTGTGCCTAGCAGGCTCTGT
34687759 TTCAGTGATA
Statistics
Matches: 107, Mismatches: 26, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
37 3 0.03
38 101 0.94
39 3 0.03
ACGTcount: A:0.15, C:0.22, G:0.27, T:0.35
Consensus pattern (38 bp):
GCTCTGTGCCTAGCAGGCTCTGTGTCGATGTTATTCAA
Found at i:34687729 original size:76 final size:76
Alignment explanation
Indices: 34687585--34687798 Score: 189
Period size: 76 Copynumber: 2.8 Consensus size: 76
34687575 GCCCAGCAGG
* * * * ** * * * ** *
34687585 CTCTGTGCCTAGCAGGATTTGTGCCAGTTTTATTCAAGCTCTGTGCCTAGTAGGC-TCTGTTTCG
1 CTCTGTGCCTAGCAAGCTATGTGTCAGTGATATCCAGGCTCTGTGCCTAGCAGGCTTC-GTGCCA
*
34687649 ATGTTATT-TGA
65 ATGTTATTCGGA
*
34687660 GCTCTGTGCCTAGCAAGCTATGTGTCGGTGATATCCAGGCTCTGTGCCTAGCAGGCTTCGTGCCA
1 -CTCTGTGCCTAGCAAGCTATGTGTCAGTGATATCCAGGCTCTGTGCCTAGCAGGCTTCGTGCCA
34687725 ATGTTATTCGGA
65 ATGTTATTCGGA
* * * * * * * * *
34687737 TTCTGTGCCTAGTAGGCTCTGTTTCAGTGATATTCGGGCTCTGTACTTAGCAGGCTTCGTGC
1 CTCTGTGCCTAGCAAGCTATGTGTCAGTGATATCCAGGCTCTGTGCCTAGCAGGCTTCGTGC
34687799 TGGTGTAATT
Statistics
Matches: 112, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
76 108 0.96
77 4 0.04
ACGTcount: A:0.15, C:0.22, G:0.27, T:0.36
Consensus pattern (76 bp):
CTCTGTGCCTAGCAAGCTATGTGTCAGTGATATCCAGGCTCTGTGCCTAGCAGGCTTCGTGCCAA
TGTTATTCGGA
Found at i:34687771 original size:38 final size:38
Alignment explanation
Indices: 34687585--34687792 Score: 129
Period size: 38 Copynumber: 5.5 Consensus size: 38
34687575 GCCCAGCAGG
* * * ** *
34687585 CTCTGTGCCTAGCAGGATTTGTGCCAGTTTTATTC-AA
1 CTCTGTGCCTAGCAGGCTCTGTGTCAGTGATATTCGGA
* * * *
34687622 GCTCTGTGCCTAGTAGGCTCTGTTTC-GATGTTATT-TGA
1 -CTCTGTGCCTAGCAGGCTCTGTGTCAG-TGATATTCGGA
* * * *
34687660 GCTCTGTGCCTAGCAAGCTATGTGTCGGTGATATCCAGG-
1 -CTCTGTGCCTAGCAGGCTCTGTGTCAGTGATATTC-GGA
* * *
34687699 CTCTGTGCCTAGCAGGCT-TCGTGCCAATGTTATTCGGA
1 CTCTGTGCCTAGCAGGCTCT-GTGTCAGTGATATTCGGA
* * * *
34687737 TTCTGTGCCTAGTAGGCTCTGTTTCAGTGATATTCGGG
1 CTCTGTGCCTAGCAGGCTCTGTGTCAGTGATATTCGGA
* *
34687775 CTCTGTACTTAGCAGGCT
1 CTCTGTGCCTAGCAGGCT
34687793 TCGTGCTGGT
Statistics
Matches: 131, Mismatches: 31, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
37 4 0.03
38 124 0.95
39 2 0.02
40 1 0.01
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (38 bp):
CTCTGTGCCTAGCAGGCTCTGTGTCAGTGATATTCGGA
Found at i:34687788 original size:114 final size:114
Alignment explanation
Indices: 34687581--34687788 Score: 285
Period size: 114 Copynumber: 1.8 Consensus size: 114
34687571 CTGTGCCCAG
* * *
34687581 CAGGCTCTGTGCCTAGCAGGATTTGTGCCAGTTTTATTCAAGCTCTGTGCCTAGTAGGCTCTGTT
1 CAGGCTCTGTGCCTAGCAGGATTCGTGCCAATGTTATTCAAGCTCTGTGCCTAGTAGGCTCTGTT
* * *
34687646 TCGATGTTATTTGAGCTCTGTGCCTAGCAAGCTATGTGTCGGTGATATC
66 TCGATGATATTCGAGCTCTGTACCTAGCAAGCTATGTGTCGGTGATATC
* * *
34687695 CAGGCTCTGTGCCTAGCAGGCTTCGTGCCAATGTTATTC-GGATTCTGTGCCTAGTAGGCTCTGT
1 CAGGCTCTGTGCCTAGCAGGATTCGTGCCAATGTTATTCAAG-CTCTGTGCCTAGTAGGCTCTGT
* *
34687759 TTC-AGTGATATTCGGGCTCTGTACTTAGCA
65 TTCGA-TGATATTCGAGCTCTGTACCTAGCA
34687789 GGCTTCGTGC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
113 2 0.02
114 79 0.98
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.35
Consensus pattern (114 bp):
CAGGCTCTGTGCCTAGCAGGATTCGTGCCAATGTTATTCAAGCTCTGTGCCTAGTAGGCTCTGTT
TCGATGATATTCGAGCTCTGTACCTAGCAAGCTATGTGTCGGTGATATC
Found at i:34689101 original size:24 final size:24
Alignment explanation
Indices: 34689068--34689113 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
34689058 AACCCATTAC
*
34689068 AGAATAAGAAACATTATCAAAACT
1 AGAATAAGAAACATAATCAAAACT
* *
34689092 AGAATCAGAATCATAATCAAAA
1 AGAATAAGAAACATAATCAAAA
34689114 TCAGGTGACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.59, C:0.13, G:0.09, T:0.20
Consensus pattern (24 bp):
AGAATAAGAAACATAATCAAAACT
Found at i:34689103 original size:6 final size:6
Alignment explanation
Indices: 34689092--34689170 Score: 54
Period size: 6 Copynumber: 12.8 Consensus size: 6
34689082 TATCAAAACT
* * * *
34689092 AGAATC AGAATC ATAATC AAAATC AG-GTGAC AGAATT AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
34689141 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
34689171 GTGAATGCAA
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
5 3 0.05
6 45 0.80
7 6 0.11
8 2 0.04
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:34689133 original size:31 final size:31
Alignment explanation
Indices: 34689092--34689170 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
34689082 TATCAAAACT
* *
34689092 AGAATCAGAATCATAATCAAAATCAGGTGAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
* **
34689123 AGAATTAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
*
34689154 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
34689171 GTGAATGCAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAAATCAGGTAAC
Found at i:34689595 original size:27 final size:27
Alignment explanation
Indices: 34689565--34689706 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
34689555 AGGGCAAAAT
* * *
34689565 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
34689592 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
34689619 GATAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
34689646 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
34689673 GGTAATTCTACCCTA-TAGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
34689700 GGTAATT
1 GGTAATT
34689707 TCACAAATCA
Statistics
Matches: 100, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.02
27 98 0.98
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:34689732 original size:81 final size:81
Alignment explanation
Indices: 34689564--34689733 Score: 198
Period size: 81 Copynumber: 2.1 Consensus size: 81
34689554 AAGGGCAAAA
* * * *
34689564 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGGGTATTTCGATAATTTTA
1 TGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGAGGTATTTCGATAATTTCA
** *
34689629 CCCTACAGGGGTATTT
66 CAATACAGAGGTATTT
** * * * *
34689645 CAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGAGGTATTTCGGTAATTTCA
1 TGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGAGGTATTTCGATAATTTCA
*
34689710 CAA-ATCAGATGTATTT
66 CAATA-CAGAGGTATTT
34689726 TGGTAATT
1 TGGTAATT
34689734 TTACAAACCA
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 1 0.01
81 71 0.99
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (81 bp):
TGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGAGGTATTTCGATAATTTCA
CAATACAGAGGTATTT
Found at i:34689750 original size:54 final size:54
Alignment explanation
Indices: 34689692--34689807 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
34689682 ACCCTATAGA
* *
34689692 GGTATTTCGGTAATTTCACAAATC-AGATGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTCGGTAATTTCACAAATCGAG-GGTATTTTGGTAATTTTACAAACCAAG
* * *** **
34689746 GGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTCGGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAACCAAG
34689800 GGTATTTC
1 GGTATTTC
34689808 AATAATTTTG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 49 0.96
55 2 0.04
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (54 bp):
GGTATTTCGGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAACCAAG
Found at i:34689762 original size:27 final size:27
Alignment explanation
Indices: 34689692--34689806 Score: 106
Period size: 27 Copynumber: 4.3 Consensus size: 27
34689682 ACCCTATAGA
* * * *
34689692 GGTATTTCGGTAATTTCACAAATCAGA
1 GGTATTTTGGTAATTTTACAAACCAGG
*
34689719 TGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*** *
34689746 GGTATTTTGGTAATTTTATTGATC-GAG
1 GGTATTTTGGTAATTTTACAAACCAG-G
** *
34689773 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
34689800 GGTATTT
1 GGTATTT
34689807 CAATAATTTT
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 1 0.01
27 70 0.99
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:34689825 original size:54 final size:54
Alignment explanation
Indices: 34689720--34689827 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
34689710 CAAATCAGAT
* *** **
34689720 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGG
1 GTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATAAATCGAGG
** *
34689774 GTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAATAATTTTGTAAATCGAGG
1 GTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATAAATCGAGG
34689828 ATAAAATGGT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATAAATCGAGG
Found at i:34689838 original size:81 final size:81
Alignment explanation
Indices: 34689753--34689922 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
34689743 AGGGGTATTT
* ** *** * * ** *
34689753 TGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGT-ATTTCAATAATTTT
1 TGGTAATTATATAAATCGAGGGTAAAATGGTAATTCTATAAACCAAGGGTAAAAT-AATAATTCT
34689817 GTAAATCGAGGATAAAA
65 GTAAATCGAGGATAAAA
* * *
34689834 TGGTAATTATATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTG
1 TGGTAATTATATAAATCGAGGGTAAAATGGTAATTCTATAAACCAAGGGTAAAATAATAATTCTG
*
34689899 TAAATCGAGGGTAAAA
66 TAAATCGAGGATAAAA
34689915 TGGTAATT
1 TGGTAATT
34689923 CTATCTTATT
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
81 71 0.97
82 2 0.03
ACGTcount: A:0.37, C:0.06, G:0.22, T:0.35
Consensus pattern (81 bp):
TGGTAATTATATAAATCGAGGGTAAAATGGTAATTCTATAAACCAAGGGTAAAATAATAATTCTG
TAAATCGAGGATAAAA
Found at i:34689840 original size:27 final size:27
Alignment explanation
Indices: 34689818--34689926 Score: 182
Period size: 27 Copynumber: 4.0 Consensus size: 27
34689808 AATAATTTTG
* *
34689818 TAAATCGAGGATAAAATGGTAATTATA
1 TAAATCGAGGGTAAAATGGTAATTCTA
34689845 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
34689872 TAAATCGAGGGTAAAATGATAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
34689899 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
34689926 T
1 T
34689927 CTTATTTCAG
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGGTAATTCTA
Found at i:34689856 original size:54 final size:53
Alignment explanation
Indices: 34689780--34689913 Score: 133
Period size: 54 Copynumber: 2.5 Consensus size: 53
34689770 GAGGGTATTT
* * * ** * *
34689780 TGGTAATTTTGTAAACCAAGGGTATTTCAATAATTTTGTAAATCGAGGATAAAA
1 TGGTAATTATGTAAATCGAGGGTAAAT-AATAATTCTATAAATCGAGGATAAAA
* ** *
34689834 TGGTAATTATATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTATGTAAATCGAGGGT-AAATAATAATTCTATAAATCGAGGATAAAA
* *
34689888 TGATAATTCTGTAAATCGAGGGTAAA
1 TGGTAATTATGTAAATCGAGGGTAAA
34689914 ATGGTAATTC
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
53 3 0.05
54 60 0.92
55 2 0.03
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (53 bp):
TGGTAATTATGTAAATCGAGGGTAAATAATAATTCTATAAATCGAGGATAAAA
Found at i:34689959 original size:27 final size:27
Alignment explanation
Indices: 34689929--34690020 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
34689919 AATTCTATCT
* *
34689929 TATTTCAGTAATTTTACAAATAGAGGA
1 TATTTCAGTAATTTTACAAATCGAGGG
** * *
34689956 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
* *
34689983 TACTTT-GGTAATTTTACAAGTCGAGGG
1 TA-TTTCAGTAATTTTACAAATCGAGGG
34690010 TATTTCAGTAA
1 TATTTCAGTAA
34690021 ATTGGTAAAC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.06
27 47 0.89
28 3 0.06
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
TATTTCAGTAATTTTACAAATCGAGGG
Found at i:34692030 original size:6 final size:6
Alignment explanation
Indices: 34691975--34692068 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
34691965 AAGAAACATT
* * * *
34691975 ATCAGA A-CTAGA ATCAAA ATCAGA ATCATA ATCATA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
34692024 ATTAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
34692069 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 12, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 55 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:34692039 original size:31 final size:31
Alignment explanation
Indices: 34691992--34692068 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
34691982 CTAGAATCAA
* *
34691992 AATCAGAATCATAATCA-TAATCAGGTGACAG
1 AATCAGAATCAGAATCAGT-ATCAGGTAACAG
*
34692023 AATTAGAATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGTATCAGGTAACAG
*
34692054 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
34692069 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 39 0.98
32 1 0.03
ACGTcount: A:0.48, C:0.14, G:0.16, T:0.22
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGTATCAGGTAACAG
Found at i:34692486 original size:27 final size:27
Alignment explanation
Indices: 34692457--34692589 Score: 178
Period size: 27 Copynumber: 4.9 Consensus size: 27
34692447 GGGCAAAATG
* * * *
34692457 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
34692484 GTAATTCTACCCTAC-AGAGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCA
* * *
34692511 ATAATTTTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
34692538 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
34692565 GTAATTCTACCCTACAGGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
34692590 TGGTAATTTC
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 2 0.02
27 90 0.97
28 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:34692516 original size:54 final size:54
Alignment explanation
Indices: 34692458--34692597 Score: 201
Period size: 54 Copynumber: 2.6 Consensus size: 54
34692448 GGCAAAATGG
* * *
34692458 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTAC-AGAGGTATTTCAA
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAG-GGTATTTCAA
* *
34692512 TAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAG
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
* *
34692566 TAATTCTACCCTACAGGGGTATTTTGGTAATT
1 TAATTTTACCCTACAGGGGTATTTCGGTAATT
34692598 TCACAAACCA
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 75 0.97
55 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (54 bp):
TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAA
Found at i:34692623 original size:81 final size:81
Alignment explanation
Indices: 34692455--34692624 Score: 207
Period size: 81 Copynumber: 2.1 Consensus size: 81
34692445 AGGGGCAAAA
* * *
34692455 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGAGGTATTTCAATAATTTTA
1 TGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGAGGTATTTCAATAATTTCA
**
34692520 CCCTACAGGGGTATTT
66 CCAAACAGGGGTATTT
** * * * ***
34692536 CAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTTCA
1 TGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGAGGTATTTCAATAATTTCA
34692601 -CAAACCAGGGGTATTT
66 CCAAA-CAGGGGTATTT
34692617 TGGTAATT
1 TGGTAATT
34692625 TTATTGATCG
Statistics
Matches: 73, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
80 2 0.03
81 71 0.97
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (81 bp):
TGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGAGGTATTTCAATAATTTCA
CCAAACAGGGGTATTT
Found at i:34692665 original size:27 final size:27
Alignment explanation
Indices: 34692582--34692670 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
34692572 TACCCTACAG
*** *
34692582 GGGTATTTTGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTTTAAACCAA
* * *
34692609 GGGTATTTTGGTAATTTTATT-GATCGA
1 GGGTATTTTGGTAATTTT-TTAAACCAA
34692636 GGGTATTTTGGTAATTTTTTAAACCAA
1 GGGTATTTTGGTAATTTTTTAAACCAA
34692663 GGGTATTT
1 GGGTATTT
34692671 CAATAATTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.04
27 48 0.96
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTTTAAACCAA
Found at i:34692678 original size:54 final size:54
Alignment explanation
Indices: 34692582--34692694 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
34692572 TACCCTACAG
* *** **
34692582 GGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTCACAAACCAAGGGTATTTCAATAATTTTATAAATCGA
*** *
34692636 GGGTATTTTGGTAATTTTTTAAACCAAGGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTCACAAACCAAGGGTATTTCAATAATTTTATAAATCGA
34692690 GGGTA
1 GGGTA
34692695 AAATGGTAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTCACAAACCAAGGGTATTTCAATAATTTTATAAATCGA
Found at i:34692704 original size:27 final size:27
Alignment explanation
Indices: 34692674--34692788 Score: 185
Period size: 27 Copynumber: 4.3 Consensus size: 27
34692664 GGTATTTCAA
*
34692674 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
34692701 TAATTCTATAAATCGAGGTTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
34692728 TAAATCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
34692755 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
34692782 TAATTCT
1 TAATTCT
34692789 ATCTTATTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAATGG
Found at i:34692884 original size:27 final size:27
Alignment explanation
Indices: 34692793--34692884 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
34692783 AATTCTATCT
*
34692793 TATTTTGGTAATTTTATAAATTGAGGA
1 TATTTTGGTAATTTTATAAATTGAGGG
* *
34692820 TATTTGGGTAATTTTATAAATTGGGGG
1 TATTTTGGTAATTTTATAAATTGAGGG
* * * *
34692847 TACTTTGGTAATTTTACAAGTCGAGGG
1 TATTTTGGTAATTTTATAAATTGAGGG
*
34692874 TATTTTAGTAA
1 TATTTTGGTAA
34692885 ATTGGTAAAC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.45
Consensus pattern (27 bp):
TATTTTGGTAATTTTATAAATTGAGGG
Found at i:34705388 original size:29 final size:28
Alignment explanation
Indices: 34705342--34705421 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 28
34705332 GACTATAAAA
34705342 GTGATTGGGCCTAGTGGGCCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
* *
34705370 GTGATTTGGGTCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
*
34705399 GAGATTGGGCCTAGTGGGCCATA
1 GTGATTGGGCCTAGTGGGCCATA
34705422 AGCATGTATG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 21 0.47
29 23 0.51
30 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.35, T:0.29
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:34712270 original size:21 final size:21
Alignment explanation
Indices: 34712227--34712270 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
34712217 ACACATGCAA
* *
34712227 AAACTAACAATATATGAATCT
1 AAACTAACAACATATGAAACT
34712248 AAACTAACAACATACT-AAACT
1 AAACTAACAACATA-TGAAACT
34712269 AA
1 AA
34712271 TTGAGACAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.57, C:0.18, G:0.02, T:0.23
Consensus pattern (21 bp):
AAACTAACAACATATGAAACT
Found at i:34712481 original size:5 final size:5
Alignment explanation
Indices: 34712463--34712537 Score: 59
Period size: 5 Copynumber: 15.4 Consensus size: 5
34712453 AAAAATTAGT
* *
34712463 AAAT- AAATA GAATA AAATA AAA-A ATA-A AAATAA AAATAA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAAT-A AAAT-A AAATA AAATA
* * *
34712512 AACTA AAATA AGAT- AAAGA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AA
34712538 GAAATGGGGA
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
4 12 0.21
5 34 0.60
6 11 0.19
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:34712488 original size:12 final size:12
Alignment explanation
Indices: 34712463--34712519 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
34712453 AAAAATTAGT
34712463 AAATAAATAGAATA
1 AAATAAA-A-AATA
34712477 AAATAAAAAATA
1 AAATAAAAAATA
34712489 AAA-ATAAAAATA
1 AAATA-AAAAATA
*
34712501 AAA-ATAAAATA
1 AAATAAAAAATA
*
34712512 AACTAAAA
1 AAATAAAA
34712520 TAAGATAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
11 9 0.24
12 21 0.55
13 1 0.03
14 7 0.18
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.18
Consensus pattern (12 bp):
AAATAAAAAATA
Found at i:34712491 original size:6 final size:6
Alignment explanation
Indices: 34712476--34712513 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
34712466 TAAATAGAAT
34712476 AAAATAA AAAATA AAAATA AAAATA AAAAT- AAAATA AA
1 AAAAT-A AAAATA AAAATA AAAATA AAAATA AAAATA AA
34712514 CTAAAATAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 5 0.17
6 20 0.67
7 5 0.17
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:34726325 original size:11 final size:11
Alignment explanation
Indices: 34726309--34726350 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
34726299 CCTAAGGATG
*
34726309 AAATAAAATTA
1 AAATAAAAATA
34726320 AAATAAAAGA-A
1 AAATAAAA-ATA
34726331 AAATAAAAATA
1 AAATAAAAATA
34726342 AAATAAAAA
1 AAATAAAAA
34726351 GTAGTTTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 1 0.04
11 27 0.96
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:34726339 original size:17 final size:17
Alignment explanation
Indices: 34726313--34726350 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
34726303 AGGATGAAAT
*
34726313 AAAATTAAAATAAAAGA
1 AAAATAAAAATAAAAGA
*
34726330 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAAGA
34726347 AAAA
1 AAAA
34726351 GTAGTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.16
Consensus pattern (17 bp):
AAAATAAAAATAAAAGA
Found at i:34726377 original size:14 final size:13
Alignment explanation
Indices: 34726367--34726403 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
34726357 TTGAAAAGAT
34726367 AAAAATAAAAATA
1 AAAAATAAAAATA
34726380 AAAACATAAAAATA
1 AAAA-ATAAAAATA
*
34726394 ATAAATAAAA
1 AAAAATAAAA
34726404 GTCTTTAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:34726382 original size:5 final size:6
Alignment explanation
Indices: 34726309--34726403 Score: 61
Period size: 6 Copynumber: 15.3 Consensus size: 6
34726299 CCTAAGGATG
* * *
34726309 AAAT-A AAATTA AAAT-A AAAGAA AAATAA AAAT-A AAATAA AAAGTAG
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA-TAA
***
34726355 TTTTGAA AAGATAA AAATAA AAATAAA AACATAA AAATAA TAAATAA AA
1 AAAT-AA AA-ATAA AAATAA AAAT-AA AA-ATAA AAATAA -AAATAA AA
34726404 GTCTTTAAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 17
0.72 0.10 0.17
Matches are distributed among these distances:
5 13 0.18
6 34 0.48
7 21 0.30
8 3 0.04
ACGTcount: A:0.74, C:0.01, G:0.05, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:34726383 original size:20 final size:21
Alignment explanation
Indices: 34726360--34726403 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
34726350 AGTAGTTTTG
*
34726360 AAAAGATAAAAATAA-AAATA
1 AAAACATAAAAATAATAAATA
34726380 AAAACATAAAAATAATAAATA
1 AAAACATAAAAATAATAAATA
34726401 AAA
1 AAA
34726404 GTCTTTAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (21 bp):
AAAACATAAAAATAATAAATA
Found at i:34733431 original size:23 final size:25
Alignment explanation
Indices: 34733405--34733457 Score: 58
Period size: 23 Copynumber: 2.2 Consensus size: 25
34733395 TATCGGGAAC
34733405 TAAATACAAAAATAAAT-AACAAA-
1 TAAATACAAAAATAAATAAACAAAT
* * *
34733428 TAAA-ACACAAATGACTAAACAAAT
1 TAAATACAAAAATAAATAAACAAAT
34733452 TAAATA
1 TAAATA
34733458 AATCAAGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
22 9 0.38
23 10 0.42
24 4 0.17
25 1 0.04
ACGTcount: A:0.68, C:0.11, G:0.02, T:0.19
Consensus pattern (25 bp):
TAAATACAAAAATAAATAAACAAAT
Found at i:34734941 original size:39 final size:40
Alignment explanation
Indices: 34734864--34735010 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
34734854 TAGCTCCTCG
* * *
34734864 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
34734904 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
34734943 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
34734983 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
34735011 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:34735021 original size:80 final size:80
Alignment explanation
Indices: 34734910--34735090 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
34734900 CTCATTCAAT
* * *
34734910 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
34734973 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
34734989 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
34735053 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
34735070 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
34735091 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:34735050 original size:40 final size:40
Alignment explanation
Indices: 34734907--34735090 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
34734897 TAACTCATTC
* *
34734907 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
34734947 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
34734987 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
34735027 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
34735068 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34735091 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:34742857 original size:39 final size:40
Alignment explanation
Indices: 34742780--34742926 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
34742770 TAGCTCCTCG
* * *
34742780 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
34742820 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
34742859 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
34742899 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
34742927 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:34742937 original size:80 final size:80
Alignment explanation
Indices: 34742826--34743006 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
34742816 CTCATTCAAT
* * *
34742826 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
34742889 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
34742905 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
34742969 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
34742986 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
34743007 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:34742966 original size:40 final size:40
Alignment explanation
Indices: 34742823--34743006 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
34742813 TAACTCATTC
* *
34742823 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
34742863 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
34742903 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
34742943 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
34742984 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34743007 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:34751549 original size:47 final size:47
Alignment explanation
Indices: 34751446--34751638 Score: 273
Period size: 47 Copynumber: 4.1 Consensus size: 47
34751436 TTAGGATTTT
* * *
34751446 ATGTGATGAATGTGAATGA-GTATATATGAGATAA-GCCGAATGGCCA
1 ATGTGATGAATGTGAA-CATGCATATATGTGATAAGGCCGAATGGCCA
34751492 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34751539 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
34751586 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
34751633 ATGTGA
1 ATGTGA
34751639 AATATATATG
Statistics
Matches: 132, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 29 0.22
47 102 0.77
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:34751594 original size:25 final size:25
Alignment explanation
Indices: 34751519--34751594 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
34751509 ATGCATATAT
34751519 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
34751544 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
34751566 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
34751591 GTGA
1 GTGA
34751595 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:34751763 original size:98 final size:96
Alignment explanation
Indices: 34751613--34751792 Score: 317
Period size: 98 Copynumber: 1.9 Consensus size: 96
34751603 ATGCATATAT
34751613 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGG
1 GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGG
34751678 CTAATGTGAAATATGTATGAGATATGCATAC
66 CTAATGTGAAATATGTATGAGATATGCATAC
34751709 GTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAA
1 GTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGCCGAA
*
34751773 TGGCTAGTGTGAAATATGTA
63 TGGCTAATGTGAAATATGTA
34751793 GGCGATGTGT
Statistics
Matches: 80, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
95 1 0.01
96 23 0.29
97 2 0.03
98 54 0.68
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (96 bp):
GTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGG
CTAATGTGAAATATGTATGAGATATGCATAC
Found at i:34751808 original size:50 final size:48
Alignment explanation
Indices: 34751608--34751789 Score: 294
Period size: 48 Copynumber: 3.8 Consensus size: 48
34751598 TGAACATGCA
34751608 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
*
34751656 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
* *
34751704 CATACGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATG
*
34751754 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
34751790 GTAGGCGATG
Statistics
Matches: 123, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.01
48 77 0.63
49 4 0.03
50 40 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
Found at i:34752121 original size:37 final size:37
Alignment explanation
Indices: 34751953--34752120 Score: 264
Period size: 37 Copynumber: 4.5 Consensus size: 37
34751943 GATGAGATCT
34751953 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCC
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCC
*
34751990 GATGACTACGTGTGGGGATTATGTCCGGGTAAGACCC
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCC
* * *
34752027 GATGACTACGTGTGGGGAGTATGTTCGGGTAAGACCC
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCC
* *
34752064 GATGACTACGTGTTGAGATTTTGTCCGGGTAAGACCC
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCC
* *
34752101 GATAACTTCGTGTGGAGATT
1 GATGACTACGTGTGGAGATT
34752121 TCGTCTGAGC
Statistics
Matches: 120, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 120 1.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (37 bp):
GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCC
Found at i:34754005 original size:42 final size:42
Alignment explanation
Indices: 34753951--34754047 Score: 158
Period size: 42 Copynumber: 2.3 Consensus size: 42
34753941 ATAGTCCAGC
* *
34753951 TATGGTCTTACACGAAGTCTCATATCGATGCCACATCTCAAA
1 TATGGTCTTACACGAAGTCTCATATAGATGCCACATCCCAAA
* *
34753993 TATGGTCTTACACGAAGTCTCATATAGATGCCATATCCCAGA
1 TATGGTCTTACACGAAGTCTCATATAGATGCCACATCCCAAA
34754035 TATGGTCTTACAC
1 TATGGTCTTACAC
34754048 ATAGCCTTAG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
TATGGTCTTACACGAAGTCTCATATAGATGCCACATCCCAAA
Found at i:34778292 original size:40 final size:40
Alignment explanation
Indices: 34778228--34778387 Score: 140
Period size: 40 Copynumber: 4.0 Consensus size: 40
34778218 CGATATCTAT
* ** * *
34778228 TGAATCTACTGAAGTGTATATGCTTTCGAGCCATACCTAC
1 TGAATCTACTAAAACGTATGTGCTTTCAAGCCATACCTAC
* * ** *** * **
34778268 TGAATCTACTCATACGTATGTGCTTTTGAGTGGTATCTGT
1 TGAATCTACTAAAACGTATGTGCTTTCAAGCCATACCTAC
* *
34778308 TAAATCTACTAAAACGTATGTGCTTTCAAGCCATACCTAT
1 TGAATCTACTAAAACGTATGTGCTTTCAAGCCATACCTAC
* **
34778348 TGAATCTACTGAAACGTATGCACTTTCAAGCCATACCTAC
1 TGAATCTACTAAAACGTATGTGCTTTCAAGCCATACCTAC
34778388 CAGTCCCACT
Statistics
Matches: 93, Mismatches: 27, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.34
Consensus pattern (40 bp):
TGAATCTACTAAAACGTATGTGCTTTCAAGCCATACCTAC
Found at i:34778399 original size:40 final size:39
Alignment explanation
Indices: 34778310--34778465 Score: 107
Period size: 40 Copynumber: 3.9 Consensus size: 39
34778300 GTATCTGTTA
* * * **
34778310 AATCTACTAAAACGTATGTGCTTTCAAGCCATACCTATTG
1 AATCCACTGAAACGTATGCGCTTTCAAGCCATACCTA-CC
* *
34778350 AATCTACTGAAACGTATGCACTTTCAAGCCATACCTACC
1 AATCCACTGAAACGTATGCGCTTTCAAGCCATACCTACC
* * * * * * *
34778389 AGTCCCACTGAAATGTATGTGCTATCGAGCCTTACCTACT
1 AAT-CCACTGAAACGTATGCGCTTTCAAGCCATACCTACC
* * ** *
34778429 ATTTCGACTGAAA-GTATGCTTTTTCGAGCCATACCTA
1 A-ATCCACTGAAACGTATGCGCTTTCAAGCCATACCTA
34778466 ATGATTCTAC
Statistics
Matches: 93, Mismatches: 21, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
39 21 0.23
40 71 0.76
41 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (39 bp):
AATCCACTGAAACGTATGCGCTTTCAAGCCATACCTACC
Found at i:34778579 original size:37 final size:39
Alignment explanation
Indices: 34778487--34778591 Score: 119
Period size: 37 Copynumber: 2.8 Consensus size: 39
34778477 AAAAGTAGCT
* * *
34778487 CAAATGAG-AAAATTTTACTGTTATACTG-ATGTGAAGCT
1 CAAATGAGTAAAA-TCTACTGTTATACTGAATGAGAAGCA
*
34778525 CAAATGAGTAAATTCTACTGTTATACTGAAT-AG-AGCA
1 CAAATGAGTAAAATCTACTGTTATACTGAATGAGAAGCA
* *
34778562 CAAATGAGTAAAATCTACAGATATACTGAA
1 CAAATGAGTAAAATCTACTGTTATACTGAA
34778592 ATAAAGCTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
37 30 0.52
38 23 0.40
39 5 0.09
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (39 bp):
CAAATGAGTAAAATCTACTGTTATACTGAATGAGAAGCA
Found at i:34789504 original size:79 final size:77
Alignment explanation
Indices: 34789402--34789625 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 77
34789392 GCTCCTCGTT
* *
34789402 CAAATGCCTTCGGGGCATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGGCTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
34789467 ATTTAGTAACTCGCA
64 ATAT-GTAACTCGCA
* * *
34789482 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
*
34789546 ATATGTATCTCGCA
64 ATATGTAACTCGCA
* * * * *
34789560 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
34789624 GA
63 GA
34789626 CATCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 26 0.21
79 74 0.60
80 23 0.19
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATGTAACTCGCA
Found at i:34789519 original size:39 final size:38
Alignment explanation
Indices: 34789402--34789625 Score: 227
Period size: 40 Copynumber: 5.7 Consensus size: 38
34789392 GCTCCTCGTT
* *
34789402 CAAATGCCTTCGGGGCATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGGCTTAGCCCGGAT-TAGTAACTCGCA
*
34789442 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGA-TTAGTAACTCGCA
*
34789482 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGG-ATTAGTAACTCGCA
* * *
34789521 CAAATGCCTTCGGATCTTAGTCCGGA-TATGTATCTCGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTA-GTAACTCGCA
* * * * *
34789560 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAT-TAGTAAC-TCGCA
34789601 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
34789626 CATCATTCAA
Statistics
Matches: 162, Mismatches: 13, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.01
39 74 0.46
40 76 0.47
41 10 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTAGTAACTCGCA
Found at i:34791283 original size:26 final size:26
Alignment explanation
Indices: 34791248--34791389 Score: 203
Period size: 26 Copynumber: 5.5 Consensus size: 26
34791238 ACACATTAGA
34791248 AAATGGAAGCCTTTGTGGCATATCTG
1 AAATGGAAGCCTTTGTGGCATATCTG
34791274 AAATGGAAGCCTTTGTGGCATATCTG
1 AAATGGAAGCCTTTGTGGCATATCTG
* * * * *
34791300 AAATGGAAGTCTTTGCGGTATGTCTA
1 AAATGGAAGCCTTTGTGGCATATCTG
* *
34791326 AAATGGAAGCCTATGTGGCATATCTA
1 AAATGGAAGCCTTTGTGGCATATCTG
* *
34791352 AAATGGAAGCCTTTGTAGCGTATCTG
1 AAATGGAAGCCTTTGTGGCATATCTG
34791378 AAATGGAAGCCT
1 AAATGGAAGCCT
34791390 CTATGGCGAA
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
AAATGGAAGCCTTTGTGGCATATCTG
Found at i:34801705 original size:40 final size:40
Alignment explanation
Indices: 34801623--34801833 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
34801613 TATTCGAATG
* * * *
34801623 ATATTCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
34801663 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
*
34801703 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
34801743 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * * **
34801783 ATATCTGGGCTAAGACCCAAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
34801822 ATATCC-GGCTAA
1 ATATCCGGGCTAA
34801834 ATTCTGAAGG
Statistics
Matches: 144, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
38 6 0.04
39 15 0.10
40 121 0.84
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:34807213 original size:40 final size:40
Alignment explanation
Indices: 34806975--34807199 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
34806965 TTGAATGATG
* * * * *
34806975 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
34807015 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
34807055 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34807094 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
34807134 TCCGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
34807175 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34807200 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 35 0.21
40 120 0.73
41 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34807217 original size:80 final size:80
Alignment explanation
Indices: 34806975--34807232 Score: 242
Period size: 80 Copynumber: 3.2 Consensus size: 80
34806965 TTGAATGATG
* * * * * * *
34806975 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** *
34807038 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* *
34807055 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
34807119 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
34807134 TCCGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
34807198 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
34807214 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
34807233 TACGTGATTT
Statistics
Matches: 154, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 74 0.48
80 76 0.49
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:34821019 original size:47 final size:47
Alignment explanation
Indices: 34820965--34821432 Score: 677
Period size: 47 Copynumber: 10.0 Consensus size: 47
34820955 TTAGGATTTT
** * *
34820965 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34821012 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
34821059 ATGTGGTGAATATGAACATACATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* **
34821106 ATGTGATGAATGTGAACATGCATATATGTGATGAGGTAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
34821153 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
34821200 ATGTGATGAATGTGAGCATGCATATGTGTGACAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
34821247 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
34821294 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34821341 TTGTGATGAATGT-AAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-CATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
34821388 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCAAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
34821433 TAGTGTGAAA
Statistics
Matches: 376, Mismatches: 43, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
46 2 0.01
47 372 0.99
48 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:34821139 original size:25 final size:25
Alignment explanation
Indices: 34821105--34821184 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 25
34821095 CCGAATGGCC
34821105 TATGTGATGAATGTGAACATGCATA
1 TATGTGATGAATGTGAACATGCATA
* *
34821130 TATGTGATG-AGGT-AGA-ATGGC-CA
1 TATGTGATGAATGTGA-ACAT-GCATA
*
34821153 -ATGTGATGAATGTGAGCATGCATA
1 TATGTGATGAATGTGAACATGCATA
34821177 TATGTGAT
1 TATGTGAT
34821185 AAGGCCGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 8 0.19
23 9 0.21
24 10 0.23
25 16 0.37
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (25 bp):
TATGTGATGAATGTGAACATGCATA
Found at i:34825677 original size:31 final size:31
Alignment explanation
Indices: 34825637--34825702 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
34825627 AACCCTTCCT
*
34825637 GCATTAAATCCAACCAAAAACAGCAAATATA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
*
34825668 GCATGAAATCCAACCAAAAACAGCAAATGTA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
34825699 GCAT
1 GCAT
34825703 AAAAATACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.52, C:0.23, G:0.11, T:0.15
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAGCAAATATA
Found at i:34825718 original size:31 final size:31
Alignment explanation
Indices: 34825637--34825721 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
34825627 AACCCTTCCT
* *
34825637 GCATTAAATCCAACCAAAAACAGCAAATATA
1 GCATAAAATACAACCAAAAACAGCAAATATA
* * *
34825668 GCATGAAATCCAACCAAAAACAGCAAATGTA
1 GCATAAAATACAACCAAAAACAGCAAATATA
**
34825699 GCATAAAAATACAATAAAAAACA
1 GCAT-AAAATACAACCAAAAACA
34825722 TTAAATCTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 33 0.70
32 14 0.30
ACGTcount: A:0.58, C:0.20, G:0.08, T:0.14
Consensus pattern (31 bp):
GCATAAAATACAACCAAAAACAGCAAATATA
Found at i:34826447 original size:13 final size:14
Alignment explanation
Indices: 34826421--34826449 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
34826411 ACTAACAATG
34826421 AATTAAACCATTAT
1 AATTAAACCATTAT
34826435 AATTAAA-CATTAT
1 AATTAAACCATTAT
34826448 AA
1 AA
34826450 ATATTTACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:34829109 original size:30 final size:30
Alignment explanation
Indices: 34829075--34829132 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
34829065 TTTTCAGGCA
* * *
34829075 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTAATTTTACCAAAGTC
34829105 TAGGGGCAAAATGGTAATTTTACCAAAG
1 TAGGGGCAAAATGGTAATTTTACCAAAG
34829133 ATGTAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTTTACCAAAGTC
Found at i:34829618 original size:47 final size:46
Alignment explanation
Indices: 34829472--34829739 Score: 201
Period size: 47 Copynumber: 5.7 Consensus size: 46
34829462 TGATTTGTGC
* * *
34829472 GCCAGTGTAAGACATGTCTGGGACATGCTTCGG-C-CACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCACA-GA-GATA
* * **
34829518 GCCAGTGTAAGACCATGTCTAGGATATGGCAT---CAACACAGAGATGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCACAGAGAT-A
34829564 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATA
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-ACAGAGATA
* * * *
34829613 GCCAGTGTAAGACGTGTCTGGGACACGCATCGG-CT-A-AGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCACAGAGAT-A
* * * ** * *
34829657 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCACAGA-GATA
34829705 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
34829740 GATAAAACAG
Statistics
Matches: 177, Mismatches: 26, Indels: 34
0.75 0.11 0.14
Matches are distributed among these distances:
43 5 0.03
44 30 0.17
45 2 0.01
46 21 0.12
47 59 0.33
48 28 0.16
49 18 0.10
50 14 0.08
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCACAGAGATA
Found at i:34829687 original size:91 final size:94
Alignment explanation
Indices: 34829472--34829739 Score: 282
Period size: 94 Copynumber: 2.9 Consensus size: 94
34829462 TGATTTGTGC
* * * * *
34829472 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGC-CACAT-TATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTACATGAGAGCCAGTGTAAGACCATG
* * * ** *
34829535 TCTAGGATATGGCATCAAC-ACAGAGATGAGT
66 TCTGGGACATCGCATCGGCTA-AGAG-T-TGT
* * *
34829566 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCG-ACA-GAGATAGCCAGTGTAAGA-CG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTACATGAG--AGCCAGTGTAAGACCA
34829627 TGTCTGGGACA-CGCATCGGCTAAGAGTTGT
64 TGTCTGGGACATCGCATCGGCTAAGAGTTGT
* *
34829657 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTACATGAGAGCCAGTGTAAGACCATG
*
34829722 TCTGGGACATGGCATCGG
66 TCTGGGACATCGCATCGG
34829740 GATAAAACAG
Statistics
Matches: 148, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
91 34 0.23
92 17 0.11
93 27 0.18
94 57 0.39
95 13 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (94 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTACATGAGAGCCAGTGTAAGACCATG
TCTGGGACATCGCATCGGCTAAGAGTTGT
Found at i:34832295 original size:20 final size:18
Alignment explanation
Indices: 34832270--34832306 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
34832260 ACCTAACACA
34832270 AATTAAATTGAGAACATATT
1 AATTAAATT-A-AACATATT
34832290 AATTAAATTAAACATAT
1 AATTAAATTAAACATAT
34832307 CAACATCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 1 0.06
20 9 0.53
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35
Consensus pattern (18 bp):
AATTAAATTAAACATATT
Found at i:34832591 original size:26 final size:25
Alignment explanation
Indices: 34832545--34832593 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
34832535 AAGGAAATGA
*
34832545 AGAAAAATGGAAGGGAATGAAGACG
1 AGAAAAATGGAAGAGAATGAAGACG
34832570 AGAAAAAT-GAGAGAGAAGTGAAGA
1 AGAAAAATGGA-AGAGAA-TGAAGA
34832594 GATGAGAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.10
25 13 0.62
26 6 0.29
ACGTcount: A:0.55, C:0.02, G:0.35, T:0.08
Consensus pattern (25 bp):
AGAAAAATGGAAGAGAATGAAGACG
Found at i:34833852 original size:46 final size:46
Alignment explanation
Indices: 34833782--34833873 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
34833772 CCCTAGACTC
* *
34833782 AGCTTCAATTGGATCTTCAGAATAATTATCTTCAATACACCAACTT
1 AGCTTCAATCGGATCTTCAAAATAATTATCTTCAATACACCAACTT
34833828 AGCTTCAATCGGATCTTCAAAATAATTATCTTCAATACACCAACTT
1 AGCTTCAATCGGATCTTCAAAATAATTATCTTCAATACACCAACTT
34833874 CCTTTGCTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (46 bp):
AGCTTCAATCGGATCTTCAAAATAATTATCTTCAATACACCAACTT
Found at i:34856684 original size:11 final size:11
Alignment explanation
Indices: 34856668--34856697 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
34856658 TTTTTCATTA
*
34856668 TTTCACATATT
1 TTTCACATAAT
34856679 TTTCACATAAT
1 TTTCACATAAT
34856690 TTTCACAT
1 TTTCACAT
34856698 TTCTCAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.00, T:0.50
Consensus pattern (11 bp):
TTTCACATAAT
Found at i:34862697 original size:30 final size:30
Alignment explanation
Indices: 34862663--34862723 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
34862653 TCCTTAACTC
34862663 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * *
34862693 AAACTTTTGCATATTTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
34862723 A
1 A
34862724 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:34881190 original size:24 final size:25
Alignment explanation
Indices: 34881163--34881219 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
34881153 AAGGAAATGA
*
34881163 AGAAAAATG-GTAGAGAA-TGAAGAG
1 AGAAAAATGAG-AGAGAAGTAAAGAG
34881187 AGAAAAATGAGAGAGAAGTAAAGAG
1 AGAAAAATGAGAGAGAAGTAAAGAG
34881212 ATGAAAAA
1 A-GAAAAA
34881220 AGTTGAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 15 0.52
25 8 0.28
26 6 0.21
ACGTcount: A:0.60, C:0.00, G:0.30, T:0.11
Consensus pattern (25 bp):
AGAAAAATGAGAGAGAAGTAAAGAG
Found at i:34885595 original size:93 final size:93
Alignment explanation
Indices: 34885487--34885657 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
34885477 GCCCCTAAGT
* * *
34885487 GAACTCGAACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34885552 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
34885580 GAACTC-AGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGA-ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
34885644 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
34885658 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:34885654 original size:46 final size:46
Alignment explanation
Indices: 34885482--34885654 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
34885472 AACCCGCCCC
* * * * *
34885482 TAAGTGAACTCGAACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
34885528 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
34885576 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
34885621 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
34885655 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 58 0.56
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:34886116 original size:30 final size:30
Alignment explanation
Indices: 34886082--34886141 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
34886072 ATTTAATACG
34886082 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
34886112 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
34886142 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:34887800 original size:27 final size:27
Alignment explanation
Indices: 34887767--34888025 Score: 157
Period size: 27 Copynumber: 9.6 Consensus size: 27
34887757 TTGGTAAATC
34887767 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** *
34887794 TGTAAACCAATGGTATTTCTA-TAATTTT
1 TACAAACCAAGGGTATTTC-AGTAA-TTT
* * * *
34887822 TAGAAAGTCAAGAGTATTTCTGTAATTT
1 TACAAA-CCAAGGGTATTTCAGTAATTT
** ** * **
34887850 TGTAAATTAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
*** *
34887877 TACAAATTGAGGGTATTTCGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
*
34887904 CACAAACC-AGTGGTATTTCAGTAATTT
1 TACAAACCAAG-GGTATTTCAGTAATTT
* * **
34887931 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* * ** *
34887958 TACAAACTAGGGGTATTTTGGTAATTC
1 TACAAACCAAGGGTATTTCAGTAATTT
**
34887985 TATCCTA-CAAGGGTATTTCAGTAATTT
1 TA-CAAACCAAGGGTATTTCAGTAATTT
* *
34888012 CAC-AATCAAGGGTA
1 TACAAACCAAGGGTA
34888026 AAACGGTAAT
Statistics
Matches: 184, Mismatches: 40, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
25 1 0.01
26 11 0.06
27 141 0.77
28 18 0.10
29 13 0.07
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTCAGTAATTT
Found at i:34887919 original size:54 final size:54
Alignment explanation
Indices: 34887858--34888016 Score: 178
Period size: 54 Copynumber: 2.9 Consensus size: 54
34887848 TTTGTAAATT
*
34887858 AGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACC
* ** * * *
34887912 AGTGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACC
* ** * *
34887966 AGGGGTATTTTGGTAATTCTATCCTAC-AAGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGGTAATTTCACAA
34888017 TCAAGGGTAA
Statistics
Matches: 86, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 81 0.94
55 5 0.06
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACC
Found at i:34887950 original size:81 final size:81
Alignment explanation
Indices: 34887835--34887983 Score: 228
Period size: 81 Copynumber: 1.8 Consensus size: 81
34887825 AAAGTCAAGA
* ** * *
34887835 GTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGT
1 GTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGT
34887899 AATTTCACAAACCAGTG
65 AATTTCACAAACCAGTG
*
34887916 GTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTA
1 GTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTA
34887981 ATT
66 ATT
34887984 CTATCCTACA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
81 59 0.97
82 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
GTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTA
ATTTCACAAACCAGTG
Done.