Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 113 of 349
Found at i:35547127 original size:29 final size:29
Alignment explanation
Indices: 35547088--35547166 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
35547078 CTTAATAATC
*
35547088 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
35547118 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
35547147 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
35547167 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:35547209 original size:43 final size:43
Alignment explanation
Indices: 35547148--35547336 Score: 342
Period size: 43 Copynumber: 4.4 Consensus size: 43
35547138 TGCATTTCAA
*
35547148 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACCTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
35547191 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
35547234 GCCCGCACACTTACTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
35547277 GCCCGCACACTTACTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
35547320 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
35547337 TGAAAACCAA
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 141 1.00
ACGTcount: A:0.27, C:0.37, G:0.14, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:35548837 original size:47 final size:47
Alignment explanation
Indices: 35548759--35549112 Score: 567
Period size: 47 Copynumber: 7.6 Consensus size: 47
35548749 CCCTTCGGGA
* * * * * *
35548759 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
35548806 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35548853 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35548900 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35548949 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35548996 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35549043 CTTATCACATATATACACTTTCACA-T--T---ATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35549084 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
35549113 TATTCAAATA
Statistics
Matches: 294, Mismatches: 8, Indels: 13
0.93 0.03 0.04
Matches are distributed among these distances:
41 22 0.07
43 17 0.06
44 2 0.01
46 1 0.00
47 205 0.70
49 47 0.16
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:35549028 original size:143 final size:143
Alignment explanation
Indices: 35548759--35549112 Score: 566
Period size: 143 Copynumber: 2.5 Consensus size: 143
35548749 CCCTTCGGGA
* * * * * *
35548759 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
35548822 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
35548887 TCGGCCATTAGGC
131 TCGGCCATTAGGC
35548900 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
35548965 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
35549030 TCGGCCATTAGGC
131 TCGGCCATTAGGC
35549043 CTTATCAC--ATATATACACTTTCACA-T--T---ATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
35549100 ACACTTTCACATT
64 ACACTTTCACATT
35549113 TATTCAAATA
Statistics
Matches: 203, Mismatches: 6, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
135 22 0.11
137 19 0.09
138 1 0.00
140 1 0.00
141 27 0.13
142 1 0.00
143 132 0.65
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:35552734 original size:26 final size:27
Alignment explanation
Indices: 35552705--35552766 Score: 99
Period size: 28 Copynumber: 2.3 Consensus size: 27
35552695 TTTACTAAAC
*
35552705 TACCCCTAAGTATG-AAATTACCATTA
1 TACCCCTAAGTATGAAAATGACCATTA
35552731 TACCCCTAAGTATGCAAAATGACCATTA
1 TACCCCTAAGTATG-AAAATGACCATTA
35552759 TACCCCTA
1 TACCCCTA
35552767 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
26 14 0.42
28 19 0.58
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
TACCCCTAAGTATGAAAATGACCATTA
Found at i:35552941 original size:27 final size:26
Alignment explanation
Indices: 35552870--35552982 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
35552860 TGGAGGAAGC
35552870 GTTCTGGTGGCTATGCCACAATTATCT
1 GTTCTGGTGGCTATGCCACAA-TATCT
35552897 GTTTCTGGTGGCTATGCCACAGATATCT
1 G-TTCTGGTGGCTATGCCACA-ATATCT
* * *
35552925 GTTCTGGTGGCTCTGCCACAGTATTT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
35552951 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
35552978 GTTCT
1 GTTCT
35552983 AGCAGCCATG
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 9 0.12
27 41 0.54
28 25 0.33
29 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:35553855 original size:31 final size:31
Alignment explanation
Indices: 35553817--35553880 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
35553807 CCTTTTCATA
*
35553817 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
35553848 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
35553879 TT
1 TT
35553881 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:35554138 original size:24 final size:24
Alignment explanation
Indices: 35554074--35554190 Score: 161
Period size: 23 Copynumber: 5.0 Consensus size: 24
35554064 GCTTAATCAT
*
35554074 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
35554099 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
35554122 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
35554145 ATAACTGGGGCATAAGGCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
35554168 ATAACTGGGACATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
35554191 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
23 61 0.72
24 16 0.19
25 8 0.09
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:35554269 original size:20 final size:20
Alignment explanation
Indices: 35554240--35554280 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
35554230 TTACGAATAC
*
35554240 ATCATGTGCATATCATACAT
1 ATCATATGCATATCATACAT
35554260 ATCATATGCATATCATACAT
1 ATCATATGCATATCATACAT
35554280 A
1 A
35554281 CCATGTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (20 bp):
ATCATATGCATATCATACAT
Found at i:35554271 original size:11 final size:11
Alignment explanation
Indices: 35554240--35554276 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
35554230 TTACGAATAC
*
35554240 ATCATGTGCAT
1 ATCATATGCAT
35554251 ATCATA--CAT
1 ATCATATGCAT
35554260 ATCATATGCAT
1 ATCATATGCAT
35554271 ATCATA
1 ATCATA
35554277 CATACCATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
9 9 0.39
11 14 0.61
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:35554355 original size:25 final size:25
Alignment explanation
Indices: 35554323--35554370 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
35554313 ATATATAAAC
* *
35554323 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAATGATCATTTTTA
35554348 CCTAGGGGTAAAATGATCATTTT
1 CCTAGGGGTAAAATGATCATTTT
35554371 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (25 bp):
CCTAGGGGTAAAATGATCATTTTTA
Found at i:35561379 original size:78 final size:79
Alignment explanation
Indices: 35561196--35561415 Score: 259
Period size: 78 Copynumber: 2.8 Consensus size: 79
35561186 GCTCCTCATT
* * *
35561196 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACCAATGCCTTCGGGACTT-AGCCG
*
35561260 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* *
35561276 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCGGA
*
35561340 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
* * * * * *
35561354 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCC
35561416 CGGACATCAT
Statistics
Matches: 121, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
77 3 0.02
78 55 0.45
79 14 0.12
80 47 0.39
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCGGA
ATTAGTAACTCGCA
Found at i:35561407 original size:118 final size:120
Alignment explanation
Indices: 35561198--35561419 Score: 283
Period size: 118 Copynumber: 1.9 Consensus size: 120
35561188 TCCTCATTCA
*
35561198 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
35561263 TTAGTAACTCGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
35561318 AATGCCTTCGGG-CTTAG-CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
35561379 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCATCGGGACTTAACCCGGA
35561420 CATCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
117 4 0.05
118 60 0.68
119 12 0.14
120 12 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:35561419 original size:40 final size:40
Alignment explanation
Indices: 35561196--35561419 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
35561186 GCTCCTCATT
* *
35561196 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
35561236 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
35561276 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
35561316 CCAATGCCTTCGGG-CTTAG-CCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
35561354 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
35561395 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
35561420 CATCATTCAA
Statistics
Matches: 161, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
37 2 0.01
38 26 0.16
39 9 0.06
40 112 0.70
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:35573347 original size:54 final size:54
Alignment explanation
Indices: 35573256--35573453 Score: 317
Period size: 54 Copynumber: 3.7 Consensus size: 54
35573246 TGGAGGAAGC
*
35573256 GTCCTGGTGGCCATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
35573310 GTCCTGGTGGCTATGCCACAATTATCTAATCTAGTGGCTCAGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
35573364 GTCCTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
35573418 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
35573454 ACTTCGTCAC
Statistics
Matches: 132, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
53 6 0.05
54 126 0.95
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.32
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:35573449 original size:32 final size:27
Alignment explanation
Indices: 35573259--35573453 Score: 217
Period size: 27 Copynumber: 7.2 Consensus size: 27
35573249 AGGAAGCGTC
35573259 CTGGTGGC-CATGCCACA-ATTATCTGAT
1 CTGGTGGCTC-TGCCACATA-TATCTGAT
35573286 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACATATATCTGAT
* *
35573312 CCTGGTGGCTATGCCACA-ATTATCTAAT
1 -CTGGTGGCTCTGCCACATA-TATCTGAT
* *
35573340 CTAGTGGCTCAGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACATATATCTGAT
35573366 CCTGGTGGCTAC-GCCACA-ATTATCTGAT
1 -CTGGTGGCT-CTGCCACATA-TATCTGAT
*
35573394 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
35573421 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
35573448 CTGGTG
1 CTGGTG
35573454 ACTTCGTCAC
Statistics
Matches: 146, Mismatches: 9, Indels: 26
0.81 0.05 0.14
Matches are distributed among these distances:
26 12 0.08
27 127 0.87
28 7 0.05
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:35576674 original size:13 final size:13
Alignment explanation
Indices: 35576656--35576680 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35576646 TAATGGTATA
35576656 TTGAATCCATGAT
1 TTGAATCCATGAT
35576669 TTGAATCCATGA
1 TTGAATCCATGA
35576681 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:35578650 original size:47 final size:47
Alignment explanation
Indices: 35578596--35579331 Score: 1242
Period size: 47 Copynumber: 15.6 Consensus size: 47
35578586 TATTTGAATA
35578596 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35578643 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35578690 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35578737 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35578784 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
35578831 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGTCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
35578880 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35578927 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35578974 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35579023 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35579070 AATGTGAAAGTGTATATATGTGATTAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
35579117 AATGTGAAAGTGTATATATGTGATAAGGTCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35579164 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
35579213 AATGTGAAA--GTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
35579258 AATGTGAAAGTGTATATTTGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
35579305 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
35579332 TCCCGAAGGG
Statistics
Matches: 653, Mismatches: 28, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
45 44 0.07
47 475 0.73
49 134 0.21
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:35578895 original size:143 final size:143
Alignment explanation
Indices: 35578596--35579331 Score: 1254
Period size: 143 Copynumber: 5.2 Consensus size: 143
35578586 TATTTGAATA
35578596 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
35578661 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
35578724 AGCCGATGTGATG
131 AGCCGATGTGATG
35578737 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
35578802 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
*
35578867 AGTCGATGTGATG
131 AGCCGATGTGATG
35578880 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
35578945 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
*
35579010 GGCCGATGTGATG
131 AGCCGATGTGATG
*
35579023 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
35579088 TGTGATTAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGTCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
35579151 AGCCGATGTGATG
131 AGCCGATGTGATG
35579164 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
35579227 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-T-TGTGACAGGGCCGA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* * * *
35579290 GTGGCCAACGTGATG
129 ATAGCCGATGTGATG
* *
35579305 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
35579332 TCCCGAAGGG
Statistics
Matches: 568, Mismatches: 21, Indels: 14
0.94 0.03 0.02
Matches are distributed among these distances:
139 14 0.02
141 229 0.40
142 1 0.00
143 324 0.57
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
AGCCGATGTGATG
Found at i:35579551 original size:37 final size:37
Alignment explanation
Indices: 35579450--35579551 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
35579440 CCGAGCTCTA
*
35579450 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
35579487 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
35579524 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
35579552 CGTCTGAGCC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:35580861 original size:40 final size:40
Alignment explanation
Indices: 35580817--35581128 Score: 425
Period size: 40 Copynumber: 7.8 Consensus size: 40
35580807 GAGAATTGAG
35580817 AGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
*
35580857 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
35580897 AGTGATGTATCCGGGCTAAGT-CTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCT-GAAGAGCATTCGTGCT
35580937 AGTGATGTATCCGGGCTAAGT-CTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCT-GAAGAGCATTCGTGCT
35580977 AGTGATGTATCCGGGCTAAGT-CTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCT-GAAGAGCATTCGTGCT
*
35581017 AGTGATGTATCCGGACTAAGTTCC-GAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAG-TCCTGAAGAGCATTCGTGCT
* * * ** * *
35581057 AGTGATATATCTGTGCTAAACCCCGAAGAGCATTCCTGCT
1 AGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
* * * * * *
35581097 AGTGTTATATCAGAGTTAAGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCTGAAGAGCA
35581129 ATCATGCTGG
Statistics
Matches: 252, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
39 3 0.01
40 247 0.98
41 1 0.00
42 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
Found at i:35580950 original size:80 final size:80
Alignment explanation
Indices: 35580817--35581128 Score: 473
Period size: 80 Copynumber: 3.9 Consensus size: 80
35580807 GAGAATTGAG
35580817 AGTGATGTATCCGGGCTAAGTC-CTGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCC
1 AGTGATGTATCCGGGCTAAGTCTC-GAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCC
35580881 GAAGAGCATTCGTGCT
65 GAAGAGCATTCGTGCT
*
35580897 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCG
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
35580962 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* *
35580977 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
35581042 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * ** * * * * * * *
35581057 AGTGATATATCTGTGCTAAACCCCGAAGAGCATTCCTGCTAGTGTTATATCAGAGTTAAGTCCCG
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
35581122 AAGAGCA
66 AAGAGCA
35581129 ATCATGCTGG
Statistics
Matches: 213, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
80 212 1.00
81 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCT
Found at i:35582954 original size:13 final size:13
Alignment explanation
Indices: 35582936--35582960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35582926 TAATGGTATA
35582936 TTGAATCCATGAT
1 TTGAATCCATGAT
35582949 TTGAATCCATGA
1 TTGAATCCATGA
35582961 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:35584297 original size:23 final size:23
Alignment explanation
Indices: 35584267--35584313 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
35584257 CAGTGCAGAA
35584267 TGACACTGTAATCCTCTGTTCTG
1 TGACACTGTAATCCTCTGTTCTG
35584290 TGACACTGTAATCCTCTGTTCTG
1 TGACACTGTAATCCTCTGTTCTG
35584313 T
1 T
35584314 TTTTAGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (23 bp):
TGACACTGTAATCCTCTGTTCTG
Found at i:35584951 original size:47 final size:47
Alignment explanation
Indices: 35584897--35585348 Score: 746
Period size: 47 Copynumber: 9.6 Consensus size: 47
35584887 TATTTGAATA
35584897 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35584944 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35584991 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
35585040 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35585087 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35585134 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35585181 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
35585230 AATGTGAAA--GTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
35585275 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
35585322 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
35585349 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 16, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
45 44 0.11
47 251 0.66
49 88 0.23
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:35585060 original size:143 final size:141
Alignment explanation
Indices: 35584897--35585348 Score: 748
Period size: 143 Copynumber: 3.2 Consensus size: 141
35584887 TATTTGAATA
35584897 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
35584962 TGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
35585027 AGCCGATGTGATG
129 AGCCGATGTGATG
35585040 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
35585105 TGTGATAAGGCCTAAT-AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 TGTGATAAGGCCTAATGA-CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
35585169 GCCGATGTGATG
130 GCCGATGTGATG
35585181 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * *
35585244 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
64 TATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * *
35585309 GGCCAACGTGATG
129 AGCCGATGTGATG
* *
35585322 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
35585349 TCCCGAAGGG
Statistics
Matches: 295, Mismatches: 10, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
139 14 0.05
141 132 0.45
142 1 0.00
143 148 0.50
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
CCGATGTGATG
Found at i:35585568 original size:37 final size:37
Alignment explanation
Indices: 35585467--35585568 Score: 150
Period size: 37 Copynumber: 2.8 Consensus size: 37
35585457 CCGAGCTCTA
* *
35585467 AAGACCCGATGACTACGTATGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
35585504 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
35585541 AAGACTCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
35585569 CGTCTGAGCT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:35590075 original size:26 final size:26
Alignment explanation
Indices: 35590046--35590101 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
35590036 TGATAAAAAT
35590046 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
35590072 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
35590098 TGAT
1 TGAT
35590102 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:35590825 original size:27 final size:27
Alignment explanation
Indices: 35590783--35590922 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
35590773 AGGAAGCGTC
*
35590783 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
35590810 CTGGTGGCTCTACCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
35590836 CCTGGTGGCTATGCCACAATTAT-TGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
35590863 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
35590890 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
35590917 CTGGTG
1 CTGGTG
35590923 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
25 2 0.02
26 29 0.30
27 64 0.65
28 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:35590884 original size:53 final size:54
Alignment explanation
Indices: 35590780--35590922 Score: 236
Period size: 53 Copynumber: 2.7 Consensus size: 54
35590770 TGGAGGAAGC
35590780 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
*
35590834 GTCCTGGTGGCTATGCCACAATTAT-TGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
* *
35590887 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
35590923 ACTTCGTCAC
Statistics
Matches: 84, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
52 3 0.04
53 48 0.57
54 33 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
Found at i:35590933 original size:27 final size:26
Alignment explanation
Indices: 35590783--35590940 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 26
35590773 AGGAAGCGTC
* * *
35590783 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* * *
35590810 CTGGTGGCTCTACCACATATATCTGTC
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * *
35590837 CTGGTGGCTATGCCACAATTAT-TGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
*
35590863 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
35590890 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
35590917 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
35590941 GCAGCCTCGC
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
26 31 0.27
27 81 0.72
28 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:35590938 original size:53 final size:53
Alignment explanation
Indices: 35590780--35590940 Score: 213
Period size: 53 Copynumber: 3.0 Consensus size: 53
35590770 TGGAGGAAGC
35590780 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTC-TACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCGT--CACATATATCT
*
35590834 GTCCTGGTGGCTATGCCACAATTAT-TGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTC-GTCACATATATCT
* * *
35590887 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTTCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGC-TCGTCACATATATCT
35590940 G
1 G
35590941 GCAGCCTCGC
Statistics
Matches: 97, Mismatches: 5, Indels: 11
0.86 0.04 0.10
Matches are distributed among these distances:
52 3 0.03
53 53 0.55
54 39 0.40
55 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCGTCACATATATCT
Found at i:35605632 original size:46 final size:46
Alignment explanation
Indices: 35605501--35605666 Score: 162
Period size: 46 Copynumber: 3.5 Consensus size: 46
35605491 GTGCTAATGC
* * * *
35605501 CATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTG-TGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAG-AC-A-CATCTC-GAGGCCGATG
*
35605550 CTGTGTCCCAGACATGGTCTTACAC-AGACACATCTCGCA-GCCGATG
1 C-ATGTCCCAGACATGGTCTTACACTAGACACATCTCG-AGGCCGATG
*
35605596 CATGTCCCAGACAT-GTCTTACACTA-ACTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGAC--ACATCTCGAGGCCGATG
*
35605642 AATGTCCCAGACATGGTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
35605667 GGCTCTCATA
Statistics
Matches: 103, Mismatches: 6, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
44 11 0.11
45 15 0.15
46 40 0.39
47 11 0.11
48 1 0.01
49 3 0.03
50 22 0.21
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTAGACACATCTCGAGGCCGATG
Found at i:35626565 original size:30 final size:29
Alignment explanation
Indices: 35626529--35626589 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
35626519 GGTGTCAAGT
**
35626529 TTTGGCACTAAGTGTGTGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCCATTT-AACTAGC
35626559 TTTGGCACTAAGTGTGCCATTTAACTAGC
1 TTTGGCACTAAGTGTGCCATTTAACTAGC
35626588 TT
1 TT
35626590 CGGTTACTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCCATTTAACTAGC
Found at i:35631159 original size:39 final size:40
Alignment explanation
Indices: 35631051--35631235 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
35631041 TTGAATGATG
* * * *
35631051 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCAGAAGGCATTTGTGC-GAGTTACTAAA
* *
35631091 TCCGGACTAAGATCC-GAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCAGAAGGCATTTGTGCGAGTTACTAAA
*
35631131 TCCGGGCTAAG-CCAGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTAAA
* * * *
35631170 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTGCTATAA
1 TCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTA-AA
*
35631211 -CCGGGCTATGTCTC-GAAGGCATTTG
1 TCCGGGCTAAGTC-CAGAAGGCATTTG
35631236 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 75 0.61
41 13 0.11
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCAGAAGGCATTTGTGCGAGTTACTAAA
Found at i:35631187 original size:79 final size:80
Alignment explanation
Indices: 35631051--35631203 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 80
35631041 TTGAATGATG
* * *
35631051 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCAGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
35631116 GTGCGAGTTACTAAT
66 ATGCGAGTTACTAAT
* * **
35631131 TCCGGGCTAAG-CCAGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCAGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
35631193 TTATGCGAGTT
64 TTATGCGAGTT
35631204 GCTATAACCG
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 45 0.71
80 17 0.27
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCAGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
ATGCGAGTTACTAAT
Found at i:35631257 original size:79 final size:78
Alignment explanation
Indices: 35631085--35631258 Score: 176
Period size: 79 Copynumber: 2.2 Consensus size: 78
35631075 GTGCTAAGTG
* * *
35631085 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCAGAAGG
1 ACTATATCCGG-TTAAGATCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCAGAAGG
**
35631150 CATTGGTGCGAGTT
65 CATTGGAACGAGTT
* * *
35631164 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTATGCGAGTTGCT-ATAACCGGGCTATGTCTC-G
1 ACTATATCC-GGTTAAGAT-CCGAAGGCATTTATGCGAGTTACTAAT-ACCGGGCTAAG-C-CAG
*
35631226 AAGGCATTTGAACGAG-T
61 AAGGCATTGGAACGAGTT
35631243 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
35631259 ATTCTAAAGG
Statistics
Matches: 79, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
78 3 0.04
79 51 0.65
80 24 0.30
81 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCAGAAGGC
ATTGGAACGAGTT
Found at i:35639380 original size:3 final size:3
Alignment explanation
Indices: 35639367--35639404 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
35639357 AATTTGGATG
*
35639367 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
35639405 TTGTATGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:35641097 original size:27 final size:27
Alignment explanation
Indices: 35641067--35641128 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
35641057 ATTTACTAAA
35641067 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
35641094 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
35641120 ATACCCCTA
1 ATACCCCTA
35641129 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 22 0.69
27 8 0.25
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:35641273 original size:27 final size:27
Alignment explanation
Indices: 35641235--35641340 Score: 142
Period size: 27 Copynumber: 3.9 Consensus size: 27
35641225 GAGGAAGCTT
35641235 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
* *
35641262 TCTGGTGGCTCTACCACAAATATCTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
35641290 TTTGGTGGCTCTGCCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
35641317 TCTGGTGACTCTGTCACAATATCT
1 TCTGGTGGCTCTGCCACAATATCT
35641341 ATTTTGGCAG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
27 55 0.79
28 15 0.21
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:35641321 original size:55 final size:54
Alignment explanation
Indices: 35641237--35641345 Score: 157
Period size: 55 Copynumber: 2.0 Consensus size: 54
35641227 GGAAGCTTTC
* *
35641237 TGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTACCACAAATATCTGTTTT
1 TGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTACCAC-AATATCTATTTT
**
35641292 TGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCTATTTT
1 TGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACTCTACCACAATATCTATTTT
35641346 GGCAGCCATG
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 19 0.39
55 30 0.61
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (54 bp):
TGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTACCACAATATCTATTTT
Found at i:35656997 original size:40 final size:40
Alignment explanation
Indices: 35656918--35657094 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
35656908 CGGATGATAA
* * * *
35656918 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
35656958 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
35656998 CCGGGCTAAGACCCGAAGGTATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
35657038 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
35657078 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
35657095 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 100 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:35657362 original size:22 final size:22
Alignment explanation
Indices: 35657322--35657363 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
35657312 GAATGTGCAT
*
35657322 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
35657344 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
35657364 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:35662183 original size:29 final size:27
Alignment explanation
Indices: 35662165--35662234 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
35662155 ATATTAAGTC
35662165 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
35662192 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
35662220 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
35662235 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:35662228 original size:28 final size:28
Alignment explanation
Indices: 35662165--35662262 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
35662155 ATATTAAGTC
*
35662165 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
35662192 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
35662220 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
35662249 CGCACACTTAGTGC
1 CGCACACTTAGTGC
35662263 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:35668099 original size:40 final size:40
Alignment explanation
Indices: 35668016--35668192 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
35668006 CGGATGATAA
* * * * * * *
35668016 CCGGACTAAGATCCGAAGGCATTCGTACGAGTTGCTATGT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
35668056 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
35668096 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
35668136 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
35668176 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
35668193 ATACTTGGGT
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 99 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:35668154 original size:80 final size:80
Alignment explanation
Indices: 35668016--35668192 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 80
35668006 CGGATGATAA
* * * * * *
35668016 CCGGACTAAGATCCGAAGGCATTCGTACGAGTTGCTATGTCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTACAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
35668081 TGCTAG-TGATTATAT
66 TGCGAGTTG-TTATAT
* * *
35668096 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTACAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
35668161 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
35668176 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
35668193 ATACTTGGGT
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 69 0.81
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTACAAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTATAT
Found at i:35668460 original size:22 final size:22
Alignment explanation
Indices: 35668420--35668461 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
35668410 GAATGTGCAT
*
35668420 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
35668442 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
35668462 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:35670058 original size:34 final size:34
Alignment explanation
Indices: 35670015--35670085 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 34
35670005 GTATAGATCT
35670015 CTGATACTG-TACTGAAATGGGGCTAAGGCCCACA
1 CTGATACTGTTACTGAAAT-GGGCTAAGGCCCACA
* *
35670049 CTGATACTGTTACTGTAATGGGCTAAGGCCCAGA
1 CTGATACTGTTACTGAAATGGGCTAAGGCCCACA
35670083 CTG
1 CTG
35670086 TTTTGCACTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 26 0.76
35 8 0.24
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (34 bp):
CTGATACTGTTACTGAAATGGGCTAAGGCCCACA
Found at i:35680355 original size:55 final size:55
Alignment explanation
Indices: 35680238--35680362 Score: 133
Period size: 55 Copynumber: 2.3 Consensus size: 55
35680228 TACGATATGG
* ** * * *
35680238 CCATGGTCGAGCCTGCCAAAATAACACAGGTGTGCGACACAACCGTGTGGAAGAA
1 CCATGGTCGAGCCTGCCAAAACAACACAGGCATGCGACACAACCATGTGAAACAA
** ** *
35680293 CCATGGTCGAGCCTGCCAAAACAACACAGGCATTTGACACGCCCATGTGAAACAC
1 CCATGGTCGAGCCTGCCAAAACAACACAGGCATGCGACACAACCATGTGAAACAA
* *
35680348 CCGTGGTCGACCCTG
1 CCATGGTCGAGCCTG
35680363 TTAAATTAAC
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.30, C:0.30, G:0.25, T:0.15
Consensus pattern (55 bp):
CCATGGTCGAGCCTGCCAAAACAACACAGGCATGCGACACAACCATGTGAAACAA
Found at i:35686897 original size:40 final size:39
Alignment explanation
Indices: 35686812--35686917 Score: 106
Period size: 40 Copynumber: 2.6 Consensus size: 39
35686802 TTCGGCACTG
* *
35686812 AGTGTGCGATTCAAAATAGCTTCGGCTATAAATAGCACTA
1 AGTGTGCAATTCAAAATAGCTTCGGCTAT-AATAGCAATA
* *
35686852 TGTGTGCAATTCAAAATAGCTTTGGCTAT-ATGAGGCAATA
1 AGTGTGCAATTCAAAATAGCTTCGGCTATAAT-A-GCAATA
* * *
35686892 AGTGTGCGATATCGAGATAGCTTCGG
1 AGTGTGCAAT-TCAAAATAGCTTCGG
35686918 TTAGCTTCGA
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
38 2 0.04
39 1 0.02
40 39 0.72
41 12 0.22
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (39 bp):
AGTGTGCAATTCAAAATAGCTTCGGCTATAATAGCAATA
Found at i:35696438 original size:33 final size:34
Alignment explanation
Indices: 35696392--35696459 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 34
35696382 CTAAGCCCAG
*
35696392 ATCAGTAACAGTCTGGGCCTGAGCCCTATTCAGT
1 ATCAGTAACAGTCTGGGCCTGAGCCCTATACAGT
**
35696426 ATCAGT-ACAGTCTGGGCCTTCGCCCTATACAGT
1 ATCAGTAACAGTCTGGGCCTGAGCCCTATACAGT
35696459 A
1 A
35696460 ATAGTGTGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 25 0.81
34 6 0.19
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (34 bp):
ATCAGTAACAGTCTGGGCCTGAGCCCTATACAGT
Found at i:35696490 original size:60 final size:61
Alignment explanation
Indices: 35696371--35696496 Score: 157
Period size: 60 Copynumber: 2.1 Consensus size: 61
35696361 AGTGAATAAC
* * *
35696371 ACAGTCTGGGCCTAAGCCCAGATCAGTAACAGTCTGGGCCTGAGCCCTATTCAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCAGATCAGTAACAGTCTGGGCCTAAGCCCAATACAGTATCAGT
** * * *
35696432 ACAGTCTGGGCCTTCGCCC-TATACAGTAATAGTGT-GGCCTAAGCCCAATACAGTATCAGT
1 ACAGTCTGGGCCTAAGCCCAGAT-CAGTAACAGTCTGGGCCTAAGCCCAATACAGTATCAGT
35696492 ACAGT
1 ACAGT
35696497 GTAATGCAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
60 29 0.52
61 27 0.48
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (61 bp):
ACAGTCTGGGCCTAAGCCCAGATCAGTAACAGTCTGGGCCTAAGCCCAATACAGTATCAGT
Found at i:35696873 original size:27 final size:26
Alignment explanation
Indices: 35696843--35697068 Score: 195
Period size: 27 Copynumber: 8.4 Consensus size: 26
35696833 GCATAATTCC
* *
35696843 CATTTTACCATACAAGAATATTACGGT
1 CATTTTACC-TACAGGGATATTACGGT
*
35696870 CATTTTATCCTACAGGGACATTACGGT
1 CATTTTA-CCTACAGGGATATTACGGT
35696897 CATTTTACCCTACAGGGATATTACGGT
1 CATTTTA-CCTACAGGGATATTACGGT
*
35696924 CATTTTACACTACATGGG-CATTACGGT
1 CATTTTAC-CTACA-GGGATATTACGGT
* * *
35696951 TATTTTACTTATAGAGG-TATTACGGT
1 CATTTTACCTACAG-GGATATTACGGT
* ***
35696977 CATTTTACCTTATAGGGGCGTTACGGT
1 CATTTTACC-TACAGGGATATTACGGT
* * *
35697004 CATTTTACCCTATAGGGGTATTACAGT
1 CATTTTA-CCTACAGGGATATTACGGT
* ** *
35697031 CATTTTACCCTATAGGGGCATTACGAT
1 CATTTTA-CCTACAGGGATATTACGGT
35697058 CATTTTACCTA
1 CATTTTACCTA
35697069 TTTTGGGGTT
Statistics
Matches: 172, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.01
26 27 0.16
27 137 0.80
28 7 0.04
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (26 bp):
CATTTTACCTACAGGGATATTACGGT
Found at i:35696918 original size:54 final size:53
Alignment explanation
Indices: 35696843--35697066 Score: 254
Period size: 54 Copynumber: 4.2 Consensus size: 53
35696833 GCATAATTCC
* * * *
35696843 CATTTTACCATACAAGAATATTACGGTCATTTTATCCTACAGGGACATTACGGT
1 CATTTTACCCTACAGGGATATTACGGTCATTTTA-CCTACAGGGGCATTACGGT
*
35696897 CATTTTACCCTACAGGGATATTACGGTCATTTTACACTACATGGGCATTACGGT
1 CATTTTACCCTACAGGGATATTACGGTCATTTTAC-CTACAGGGGCATTACGGT
* * * * *
35696951 TATTTTA-CTTATAGAGG-TATTACGGTCATTTTACCTTATAGGGGCGTTACGGT
1 CATTTTACCCTACAG-GGATATTACGGTCATTTTACC-TACAGGGGCATTACGGT
* * * * *
35697004 CATTTTACCCTATAGGGGTATTACAGTCATTTTACCCTATAGGGGCATTACGAT
1 CATTTTACCCTACAGGGATATTACGGTCATTTTA-CCTACAGGGGCATTACGGT
35697058 CATTTTACC
1 CATTTTACC
35697067 TATTTTGGGG
Statistics
Matches: 148, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
52 1 0.01
53 45 0.30
54 100 0.68
55 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (53 bp):
CATTTTACCCTACAGGGATATTACGGTCATTTTACCTACAGGGGCATTACGGT
Found at i:35697009 original size:107 final size:107
Alignment explanation
Indices: 35696861--35697065 Score: 295
Period size: 107 Copynumber: 1.9 Consensus size: 107
35696851 CATACAAGAA
*
35696861 TATTACGGTCATTTTATCCTACAGGGACATTACGGTCATTTTACCCTACAGGGATATTACGGTCA
1 TATTACGGTCATTTTATCCTACAGGGACATTACGGTCATTTTACCCTACAGGGATATTACAGTCA
* * *
35696926 TTTTACACTACATGGGCATTACGGTTATTTTACTTATAGAGG
66 TTTTACACTACAGGGGCATTACGATCATTTTACTTATAGAGG
* * * * *
35696968 TATTACGGTCATTTTA-CCTTATAGGGGCGTTACGGTCATTTTACCCTATAGGGGTATTACAGTC
1 TATTACGGTCATTTTATCC-TACAGGGACATTACGGTCATTTTACCCTACAGGGATATTACAGTC
* *
35697032 ATTTTACCCTATAGGGGCATTACGATCATTTTAC
65 ATTTTACACTACAGGGGCATTACGATCATTTTAC
35697066 CTATTTTGGG
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
106 2 0.02
107 84 0.98
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (107 bp):
TATTACGGTCATTTTATCCTACAGGGACATTACGGTCATTTTACCCTACAGGGATATTACAGTCA
TTTTACACTACAGGGGCATTACGATCATTTTACTTATAGAGG
Found at i:35697342 original size:132 final size:132
Alignment explanation
Indices: 35697103--35697365 Score: 481
Period size: 132 Copynumber: 2.0 Consensus size: 132
35697093 GACCCCTCCA
*
35697103 AAGGTCTACAATCGCCTCGAATGACACAAATAACCAAAATGATCATAACGGTGTAAATGGGCCCA
1 AAGGTCTACAATCGCCTCGAACGACACAAATAACCAAAATGATCATAACGGTGTAAATGGGCCCA
35697168 AGGCACATTACTCGGCCCAAGTGGGCCCACACGCTCGCGTGGCCCATTTAGCCCAAACTTAGTTA
66 AGGCACATTACTCGGCCCAAGTGGGCCCACACGCTCGCGTGGCCCATTTAGCCCAAACTTAGTTA
35697233 CC
131 CC
*
35697235 AAGGTCTACAATCGCCTCGAACGACACAAATAACCTAAATGATCATAACGGTGTAAATGGGCCCA
1 AAGGTCTACAATCGCCTCGAACGACACAAATAACCAAAATGATCATAACGGTGTAAATGGGCCCA
* * *
35697300 AGGCGCATTACTCGGCCCAAGTGGGCCCACACGCTCGTGTGGCCCATTTAGCCCAAATTTAGTTA
66 AGGCACATTACTCGGCCCAAGTGGGCCCACACGCTCGCGTGGCCCATTTAGCCCAAACTTAGTTA
35697365 C
131 C
35697366 GGCTATGTGA
Statistics
Matches: 126, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 126 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (132 bp):
AAGGTCTACAATCGCCTCGAACGACACAAATAACCAAAATGATCATAACGGTGTAAATGGGCCCA
AGGCACATTACTCGGCCCAAGTGGGCCCACACGCTCGCGTGGCCCATTTAGCCCAAACTTAGTTA
CC
Found at i:35699151 original size:40 final size:40
Alignment explanation
Indices: 35699027--35699251 Score: 210
Period size: 40 Copynumber: 5.7 Consensus size: 40
35699017 TTGAATGCTG
* * * *
35699027 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ATTAAA
** * *
35699067 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA-CAAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATATTAA-A
* *
35699107 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
*
35699147 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGAT-ATTAAA
* * *
35699187 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
* * *
35699226 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
35699252 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 20, Indels: 18
0.80 0.10 0.09
Matches are distributed among these distances:
39 33 0.21
40 110 0.71
41 12 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
Found at i:35699164 original size:80 final size:78
Alignment explanation
Indices: 35699080--35699251 Score: 204
Period size: 79 Copynumber: 2.2 Consensus size: 78
35699070 GGACTAAGAT
* *
35699080 CCGAAGGCATTTGTGCGAG-A-TACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAT
1 CCGAAGGCATTTGTGCGAGCATTA-AA--TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATAC
* *
35699143 TAAATCCGGGTTAAGTC
62 TAAAACCGGGCTAAGTC
* * * *
35699160 CCGAAGGCATTCGTGCGAGTCATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-CATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
35699225 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
35699239 CCGAAGGCATTTG
1 CCGAAGGCATTTG
35699252 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
79 37 0.47
80 37 0.47
82 3 0.04
83 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGCATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:35699269 original size:79 final size:80
Alignment explanation
Indices: 35699107--35699284 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
35699097 AGATACAAGT
* * * * *
35699107 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
35699172 GTGCGAGTCATTAAA
66 GAACGAGTCACTAAA
* * * *
35699187 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
35699251 GAACGAG-GAGCTATA
66 GAACGAGTCA-CTAAA
*
35699266 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
35699285 TACGTGATTT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 16 0.20
79 47 0.57
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTCACTAAA
Found at i:35707075 original size:27 final size:27
Alignment explanation
Indices: 35707044--35707221 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35707034 TAAATTGTAC
35707044 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
35707071 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35707097 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
35707125 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
35707153 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35707180 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
35707207 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35707222 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:35707158 original size:82 final size:81
Alignment explanation
Indices: 35707045--35707200 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35707035 AAATTGTACA
* *
35707045 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
35707109 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
35707126 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
35707191 TGCGAGTTGA
65 TGCGAATTGA
35707201 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:35707212 original size:82 final size:81
Alignment explanation
Indices: 35707041--35707221 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
35707031 GATTAAATTG
* *
35707041 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
35707106 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
35707122 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
35707186 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
35707204 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
35707222 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:35715258 original size:27 final size:27
Alignment explanation
Indices: 35715227--35715404 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35715217 TAAATTGTAC
35715227 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
35715254 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35715280 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
35715308 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
35715336 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35715363 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
35715390 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35715405 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:35715341 original size:82 final size:81
Alignment explanation
Indices: 35715228--35715383 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35715218 AAATTGTACA
* *
35715228 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
35715292 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
35715309 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
35715374 TGCGAGTTGA
65 TGCGAATTGA
35715384 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:35715395 original size:82 final size:81
Alignment explanation
Indices: 35715224--35715404 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
35715214 GATTAAATTG
* *
35715224 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
35715289 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
35715305 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
35715369 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
35715387 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
35715405 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:35720180 original size:46 final size:46
Alignment explanation
Indices: 35720130--35720302 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
35720120 TGGTTGAGCA
*
35720130 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACG
* * * * * *
35720176 TCCGAACTCGTTGAGTTGACTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AA--A-ACG
* *
35720223 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACG
* *
35720269 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
35720303 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.60
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACG
Found at i:35720286 original size:93 final size:93
Alignment explanation
Indices: 35720127--35720297 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
35720117 GGATGGTTGA
* * *
35720127 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAACTCGTTGAGT
35720192 TGACTCCGAGTTCGTGAAATGTAACTAG
66 TGACTCCGAGTTCGTGAAATGTAACTAG
* *
35720220 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAACTCGTTGAGT
*
35720285 TGAGTCCGAGTTC
66 TGACTCCGAGTTC
35720298 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAACTCGTTGAGT
TGACTCCGAGTTCGTGAAATGTAACTAG
Found at i:35722995 original size:16 final size:16
Alignment explanation
Indices: 35722974--35723006 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
35722964 TAAAACTGTC
*
35722974 TCAAACAATTCATATA
1 TCAAACAATTCAGATA
35722990 TCAAACAATTCAGATA
1 TCAAACAATTCAGATA
35723006 T
1 T
35723007 TCCACATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.30
Consensus pattern (16 bp):
TCAAACAATTCAGATA
Found at i:35734400 original size:37 final size:37
Alignment explanation
Indices: 35734294--35734402 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
35734284 AGCTCAGACG
* * *
35734294 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
35734331 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
35734368 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
35734403 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:35734672 original size:48 final size:49
Alignment explanation
Indices: 35734548--35734684 Score: 215
Period size: 50 Copynumber: 2.8 Consensus size: 49
35734538 GCACATCGCC
*
35734548 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* *
35734598 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
35734646 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
35734685 TGCATGTTCA
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
48 36 0.45
49 2 0.03
50 42 0.52
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:35734686 original size:50 final size:50
Alignment explanation
Indices: 35734548--35734783 Score: 210
Period size: 47 Copynumber: 4.9 Consensus size: 50
35734538 GCACATCGCC
*
35734548 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA--CATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTC--A
*
35734598 TATATATTTCACATT-GACCATTCGGCTTTACCAC--ATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATATGCATATCTCA
*
35734646 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATGT-TCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
** * * * * *
35734695 T--AT-TCACCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTC-
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
* * * *
35734741 -ACAT-TCATCACATTGGCCATTCGGCCTTATCACATATATGCAT
1 TACATAT-TTCACATTAGCCATTCGGCTTTACCACATATATGCAT
35734784 GTTCACATTC
Statistics
Matches: 163, Mismatches: 13, Indels: 23
0.82 0.07 0.12
Matches are distributed among these distances:
46 1 0.01
47 74 0.45
48 35 0.21
49 6 0.04
50 47 0.29
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (50 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATATCTCA
Found at i:35734733 original size:47 final size:47
Alignment explanation
Indices: 35734654--35734847 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
35734644 CATACATATT
* * * *
35734654 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
35734701 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
35734748 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
35734795 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
35734842 TCACAT
1 TCACAT
35734848 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:35734774 original size:22 final size:22
Alignment explanation
Indices: 35734747--35734818 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
35734737 GCTCACATTC
35734747 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
35734769 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
35734793 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
35734816 ATC
1 ATC
35734819 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:35734778 original size:94 final size:93
Alignment explanation
Indices: 35734607--35734847 Score: 297
Period size: 94 Copynumber: 2.5 Consensus size: 93
35734597 ATATATATTT
* * *
35734607 CACATTGACCATTCGGCTTTA-CCACATATGCATATCTCATACATAT-TTCACATTAGCCATTCG
1 CACATTGGCCATTCGGCCTTATCCACATATGCATA-CTC--ACAT-TCATCACATTAGCCATTCG
* *
35734670 GCTTTACCACATATATGCATGTTCATATTCAC
62 GCCTTACCACATATATGCATGTTCACATTCAC
* *
35734702 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATC-CACATATGCATACTCACATTCATCACATTAGCCATTCGGCC
* *
35734767 TTATCACATATATGCATGTTCACATTCAT
65 TTACCACATATATGCATGTTCACATTCAC
* * * *
35734796 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATC-CACATATGCATACTCACATTCATCACAT
35734848 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
93 1 0.01
94 93 0.73
95 19 0.15
96 4 0.03
97 11 0.09
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (93 bp):
CACATTGGCCATTCGGCCTTATCCACATATGCATACTCACATTCATCACATTAGCCATTCGGCCT
TACCACATATATGCATGTTCACATTCAC
Found at i:35738740 original size:47 final size:47
Alignment explanation
Indices: 35738686--35738922 Score: 321
Period size: 47 Copynumber: 5.0 Consensus size: 47
35738676 TTAGGATTTT
** * *
35738686 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
35738733 ATGTGATGAATGTGAACCAGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-CA-TGTATATA--TGTGATAAGGCCGAATGGCCA
* ** *
35738784 ATGTGATGAATGTGAACAAGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
35738831 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
35738878 ATGTGAGGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGC
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGC
35738923 TAATAAGAAA
Statistics
Matches: 168, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
47 121 0.72
49 10 0.06
50 2 0.01
51 35 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:35739037 original size:46 final size:46
Alignment explanation
Indices: 35738901--35739037 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
35738891 GAACATGTAT
* * *
35738901 ATATGTGGTAAGGCCGAATGGCTAATAAGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* * *
35738947 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* * *
35738993 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATGTGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATG
35739038 TGTATATACA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
Found at i:35740591 original size:40 final size:40
Alignment explanation
Indices: 35740533--35740886 Score: 600
Period size: 40 Copynumber: 8.8 Consensus size: 40
35740523 TTGAGAGTTA
35740533 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
35740573 TACATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
35740613 TATATCCGAGCTAAGTCCCGAAGAGCATTCATGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
35740653 TATATCCGGGCTAAGTCTCGAACAGCATTTGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
35740693 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
35740733 TATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
35740773 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* *
35740813 TATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
35740853 TACATCCGGGCTAAGTCCTGAAGGGCATTCGTGC
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC
35740887 CGGTGATGTG
Statistics
Matches: 294, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 294 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
Found at i:35741093 original size:25 final size:25
Alignment explanation
Indices: 35741053--35741108 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
35741043 ATGTGTAATA
35741053 ACGAATGAATATAGGCACTATGTGT
1 ACGAATGAATATAGGCACTATGTGT
* *
35741078 GCGAATGAAT-TGAGGCACTGTGTGT
1 ACGAATGAATAT-AGGCACTATGTGT
35741103 ACGAAT
1 ACGAAT
35741109 TCTTTAACTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (25 bp):
ACGAATGAATATAGGCACTATGTGT
Found at i:35745087 original size:47 final size:47
Alignment explanation
Indices: 35745031--35745319 Score: 371
Period size: 47 Copynumber: 6.1 Consensus size: 47
35745021 TTAGGATTTT
** * * *
35745031 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
35745078 AAGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATA--TGTGATAAGGCCGAATGGCCA
* * *
35745129 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
35745176 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
35745223 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
35745270 ATGTGAGGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
35745317 ATG
1 ATG
35745320 AGAAATGTGT
Statistics
Matches: 216, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
47 171 0.79
49 9 0.04
51 36 0.17
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:35745169 original size:25 final size:25
Alignment explanation
Indices: 35745141--35745212 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 25
35745131 GTGATGAATG
35745141 TGAACATGCGTATGTGTGATAAGGC
1 TGAACATGCGTATGTGTGATAAGGC
* * *
35745166 TG-A-ATG-GCCA-ATGTGATGAATG-
1 TGAACATGCG-TATGTGTGAT-AAGGC
35745188 TGAACATGCGTATGTGTGATAAGGC
1 TGAACATGCGTATGTGTGATAAGGC
35745213 CGAATGGCCA
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
22 9 0.26
23 8 0.24
24 8 0.24
25 9 0.26
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (25 bp):
TGAACATGCGTATGTGTGATAAGGC
Found at i:35745429 original size:46 final size:46
Alignment explanation
Indices: 35745293--35745429 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
35745283 GAACATGTAT
* * *
35745293 ATATGTGGTAAGGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* *
35745339 ATATGAGGTAAAGCCGAATGGCTAATGTGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* * *
35745385 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATG
35745430 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.35, C:0.07, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
Found at i:35748536 original size:20 final size:20
Alignment explanation
Indices: 35748511--35748555 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
35748501 AGGGACTAAA
*
35748511 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTGTAAAATTTG
* *
35748531 ATGAAAAATTTTAAAATTTT
1 ATGAAAAATTGTAAAATTTG
35748551 ATGAA
1 ATGAA
35748556 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTGTAAAATTTG
Found at i:35756970 original size:23 final size:23
Alignment explanation
Indices: 35756927--35756970 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
35756917 ATTTACTGCG
**
35756927 TTACTATTAGCAGCTTTGCTGGA
1 TTACTATTAGCAGCTACGCTGGA
*
35756950 TTACTATTAGTAGCTACGCTG
1 TTACTATTAGCAGCTACGCTG
35756971 CGATATTGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (23 bp):
TTACTATTAGCAGCTACGCTGGA
Found at i:35763911 original size:28 final size:28
Alignment explanation
Indices: 35763851--35763911 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
35763841 AATAACCAAA
* *
35763851 ATACCCCTAAGGGGTAAAAATTACTGTT
1 ATACCCCTAAGGGGTAAAAATGACTGCT
* * * *
35763879 CTACCCCTAATGGGTGAAAATGATTGCT
1 ATACCCCTAAGGGGTAAAAATGACTGCT
35763907 ATACC
1 ATACC
35763912 TTAGAGGTAG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (28 bp):
ATACCCCTAAGGGGTAAAAATGACTGCT
Found at i:35768511 original size:40 final size:40
Alignment explanation
Indices: 35768451--35768674 Score: 270
Period size: 40 Copynumber: 5.5 Consensus size: 40
35768441 TATTCGGATG
*
35768451 ATATACGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
35768491 ATATCCGGGCTAAGTCCCGAAGGCATTTTTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
35768534 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
35768574 ATATCCAGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
35768614 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
35768654 ATATCC-GACTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
35768675 ATACTTGGGT
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
39 12 0.08
40 110 0.69
41 1 0.01
43 36 0.23
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:35768595 original size:83 final size:79
Alignment explanation
Indices: 35768456--35768674 Score: 280
Period size: 83 Copynumber: 2.7 Consensus size: 79
35768446 GGATGATATA
* **
35768456 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCC-GGCTAAGTCCCGAAGGCATTCAT
35768521 GCGAGTAGTTG-CTATACC
65 GC---TAG-TGACTATACC
*
35768539 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTCCCGAAGGCATTCAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCC-GGCTAAGTCCCGAAGGCATTCAT
*
35768604 GCTAGTGACTATATC
65 GCTAGTGACTATACC
* * * *
35768619 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGACTAAATCCCGAAG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGCTAAGTCCCGAAG
35768675 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
79 15 0.12
80 45 0.36
81 2 0.02
83 62 0.50
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGCTAAGTCCCGAAGGCATTCATG
CTAGTGACTATACC
Found at i:35779493 original size:26 final size:27
Alignment explanation
Indices: 35779444--35779507 Score: 103
Period size: 26 Copynumber: 2.4 Consensus size: 27
35779434 ATTTACTAAA
*
35779444 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAGGTATGAAAATTACCATT
*
35779471 ATACCCCTAGGTGT-AAAATTACCATT
1 ATACCCCTAGGTATGAAAATTACCATT
35779497 ATACCCCTAGG
1 ATACCCCTAGG
35779508 GTTAATTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 23 0.66
27 12 0.34
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (27 bp):
ATACCCCTAGGTATGAAAATTACCATT
Found at i:35779649 original size:27 final size:27
Alignment explanation
Indices: 35779611--35779722 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
35779601 GAGGAAGCGT
35779611 TCTGGTGGCTCTACCATAAATATCT-TA
1 TCTGGTGGCTCTACCAT-AATATCTATA
*
35779638 TCTGGTGGCTCTACCATAATATCTATT
1 TCTGGTGGCTCTACCATAATATCTATA
* * *
35779665 TCTGGTGGCTCTGCCACAATATCTGTA
1 TCTGGTGGCTCTACCATAATATCTATA
* * *
35779692 TCTGGTGACTCTATCACAATATCTAT-
1 TCTGGTGGCTCTACCATAATATCTATA
35779718 TCTGG
1 TCTGG
35779723 CAGCTATGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
26 12 0.16
27 63 0.84
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (27 bp):
TCTGGTGGCTCTACCATAATATCTATA
Found at i:35779694 original size:54 final size:53
Alignment explanation
Indices: 35779610--35779722 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 53
35779600 GGAGGAAGCG
* *
35779610 TTCTGGTGGCTCTACCATAAATATCTTATCTGGTGGCTCTACCATAATATCTA
1 TTCTGGTGGCTCTACCATAAATATCTTATCTGGTGACTCTACCACAATATCTA
* * *
35779663 TTTCTGGTGGCTCTGCCA-CAATATCTGTATCTGGTGACTCTATCACAATATCTA
1 -TTCTGGTGGCTCTACCATAAATATCT-TATCTGGTGACTCTACCACAATATCTA
35779717 TTCTGG
1 TTCTGG
35779723 CAGCTATGCT
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
53 13 0.25
54 40 0.75
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (53 bp):
TTCTGGTGGCTCTACCATAAATATCTTATCTGGTGACTCTACCACAATATCTA
Found at i:35783017 original size:34 final size:34
Alignment explanation
Indices: 35782974--35783047 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
35782964 ATATGGATCT
35782974 CTGATACTG-TACTGAAATGGGGCTAAGGCCCACA
1 CTGATACTGTTACTGAAAT-GGGCTAAGGCCCACA
*
35783008 CTGATACTGTTACTGTAATGGGCTAAGGCCCACA
1 CTGATACTGTTACTGAAATGGGCTAAGGCCCACA
35783042 CTGATA
1 CTGATA
35783048 TTGCCATTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 30 0.79
35 8 0.21
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (34 bp):
CTGATACTGTTACTGAAATGGGCTAAGGCCCACA
Found at i:35783065 original size:34 final size:34
Alignment explanation
Indices: 35782993--35783073 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
35782983 TACTGAAATG
** ** *
35782993 GGGCTAAGGCCCACACTGATACTGTTACTGTAAT
1 GGGCTAAGGCCCACACTGATACTGCCACTAAAAA
* *
35783027 GGGCTAAGGCCCACACTGATATTGCCATTAAAAA
1 GGGCTAAGGCCCACACTGATACTGCCACTAAAAA
35783061 GGGCTAAGGCCCA
1 GGGCTAAGGCCCA
35783074 GACTATTTTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.21
Consensus pattern (34 bp):
GGGCTAAGGCCCACACTGATACTGCCACTAAAAA
Found at i:35791432 original size:32 final size:32
Alignment explanation
Indices: 35791396--35791466 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
35791386 ATCATTGCTG
35791396 CTGTTTCCTAACTATTCCATGGCCAACTCTAA
1 CTGTTTCCTAACTATTCCATGGCCAACTCTAA
* *
35791428 CTGTTTCCTAACTGTTCCATGGCCAACTCTTA
1 CTGTTTCCTAACTATTCCATGGCCAACTCTAA
*
35791460 CTCTTTC
1 CTGTTTC
35791467 ATACTTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.20, C:0.32, G:0.10, T:0.38
Consensus pattern (32 bp):
CTGTTTCCTAACTATTCCATGGCCAACTCTAA
Found at i:35792000 original size:53 final size:53
Alignment explanation
Indices: 35791932--35792138 Score: 216
Period size: 53 Copynumber: 3.8 Consensus size: 53
35791922 TTCCTTTTTA
* * *
35791932 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * *
35791985 AACTCACCATTGCCATGCCTTGGCATGGTTTTACATGGGATCTTTGCCTTATTG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-TG
** * * * * * *
35792039 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
* *
35792094 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
35792139 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 44 0.36
54 40 0.33
55 38 0.31
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:35792506 original size:30 final size:30
Alignment explanation
Indices: 35792472--35792528 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
35792462 CCTTAACTCT
35792472 AACTTTGGAAAAATTACAATTTTGCCCTTA
1 AACTTTGGAAAAATTACAATTTTGCCCTTA
* * * *
35792502 AACTTTTGCAAATTTACACTTTTGCCC
1 AACTTTGGAAAAATTACAATTTTGCCC
35792529 CAAGGCTCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.39
Consensus pattern (30 bp):
AACTTTGGAAAAATTACAATTTTGCCCTTA
Found at i:35793115 original size:37 final size:37
Alignment explanation
Indices: 35793073--35793148 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
35793063 TGAAAACCTA
35793073 ATGATCTAATTACCATTTAAGGACCTCTACTTTAATT
1 ATGATCTAATTACCATTTAAGGACCTCTACTTTAATT
35793110 ATGATCTAATTACCATTTAAGGACCTCTACTTTAATT
1 ATGATCTAATTACCATTTAAGGACCTCTACTTTAATT
35793147 AT
1 AT
35793149 ACTCATTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (37 bp):
ATGATCTAATTACCATTTAAGGACCTCTACTTTAATT
Found at i:35794156 original size:123 final size:122
Alignment explanation
Indices: 35793937--35794184 Score: 433
Period size: 123 Copynumber: 2.0 Consensus size: 122
35793927 CTCAATTTTC
* * *
35793937 AAAAGACAAATGATTTTCAACTACCACGTTTCGCAACTTGTTTTAAAAGCTTTTGCAATGAACAA
1 AAAAGACAAATGATTTTCAACTACCACGTTCCGCAACTCGTTTTAAAAGCTTTTGCAATGAAAAA
* *
35794002 TGTTTTTAAAATGTAATAACAACTTATTATGACACTTGTTTTGCTAAAAAAAACCTTT
66 TGTTTTTAAAATGTAATAACAACTTAGTATGACACTTGTTTTGC-AAAAAAAACCTGT
35794060 AAAAGACAAATGATTTTCAACTACCACGTTCCGCAACTCGTTTTAAAAGCTTTTGCAATGAAAAA
1 AAAAGACAAATGATTTTCAACTACCACGTTCCGCAACTCGTTTTAAAAGCTTTTGCAATGAAAAA
*
35794125 TGTTTTTAAAATGTAATAACAACTTAGTATGACACTTGTTTTGCAAAACAAACCTGT
66 TGTTTTTAAAATGTAATAACAACTTAGTATGACACTTGTTTTGCAAAAAAAACCTGT
35794182 AAA
1 AAA
35794185 TTAACAAGGA
Statistics
Matches: 119, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
122 14 0.12
123 105 0.88
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (122 bp):
AAAAGACAAATGATTTTCAACTACCACGTTCCGCAACTCGTTTTAAAAGCTTTTGCAATGAAAAA
TGTTTTTAAAATGTAATAACAACTTAGTATGACACTTGTTTTGCAAAAAAAACCTGT
Found at i:35816524 original size:40 final size:40
Alignment explanation
Indices: 35816465--35816577 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 40
35816455 GACTATGTTC
* *
35816465 GGCACTGAGTGTGTGATTCAAAATAGCTTCGGCTATAAAT-A
1 GGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTAT--ATGA
* * *
35816506 -GCACTAAGTGTGCAATTCAAAATAGTTTTGGCTATATGA
1 GGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATATGA
* *
35816545 GGCACTAAGTGTGCGATATCGAGATAGCTTCGG
1 GGCACTAAGTGTGCGAT-TCAAAATAGCTTCGG
35816578 TTAGCTTCGA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.03
39 1 0.02
40 45 0.76
41 11 0.19
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (40 bp):
GGCACTAAGTGTGCGATTCAAAATAGCTTCGGCTATATGA
Found at i:35825432 original size:20 final size:22
Alignment explanation
Indices: 35825403--35825446 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
35825393 TTGCCTGTAC
35825403 TTAGGTACATT-TAGTT-GTATT
1 TTAGGTACATTCTA-TTAGTATT
35825424 TTAGG-ACATTCTATTAGTATT
1 TTAGGTACATTCTATTAGTATT
35825445 TT
1 TT
35825447 TCTTGTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.25, C:0.07, G:0.16, T:0.52
Consensus pattern (22 bp):
TTAGGTACATTCTATTAGTATT
Found at i:35826625 original size:54 final size:52
Alignment explanation
Indices: 35826548--35826775 Score: 260
Period size: 54 Copynumber: 4.2 Consensus size: 52
35826538 GAGCATAATT
* * * *
35826548 GTCATTTTACCATACAAGAATATTACGATCATTTTATCCTACAGGGACATTACA
1 GTCATTTTACC-TACAGGGATATTACGATCATTTTA-CCTACAGGGGCATTACG
*
35826602 GTCATTTTATCCTACAGGGATATTACGGTCATTTTACACTACAGGGGCATTACG
1 GTCATTTTA-CCTACAGGGATATTACGATCATTTTAC-CTACAGGGGCATTACG
* * *
35826656 GTCATTTTACTTATAGAGG-TATTACGGTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCTACAG-GGATATTACGATCATTTTA-CCTACAGGGGCATTACG
* * * * *
35826709 GTCATTTTACCCCACAGGGGTATTACAATCATTTTACCTTATAAGGGCATTACG
1 GTCATTTTA-CCTACAGGGATATTACGATCATTTTACC-TACAGGGGCATTACG
35826763 GTCATTTTACCTA
1 GTCATTTTACCTA
35826776 TTTTAGGGTT
Statistics
Matches: 152, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
53 54 0.36
54 96 0.63
55 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.35
Consensus pattern (52 bp):
GTCATTTTACCTACAGGGATATTACGATCATTTTACCTACAGGGGCATTACG
Found at i:35826707 original size:80 final size:81
Alignment explanation
Indices: 35826569--35826773 Score: 247
Period size: 80 Copynumber: 2.5 Consensus size: 81
35826559 ATACAAGAAT
* * * * *
35826569 ATTACGATCATTTTATCC-TA-CAGGGACATTACAGTCATTTTATCCTACAGGGATATTACGGTC
1 ATTACAATCATTTTA-CCTTATAAGGG-CATTACGGTCATTTTACCCTACAGGGACATTACGGTC
*
35826632 ATTTTACACTACAGGGGC
64 ATTTTACACCACAGGGGC
** * *
35826650 ATTACGGTCATTTTA-CTTAT-AGAGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCA
1 ATTACAATCATTTTACCTTATAAG-GGCATTACGGTCATTTTACCCTACAGGGACATTACGGTCA
* *
35826713 TTTTACCCCACAGGGGT
65 TTTTACACCACAGGGGC
35826730 ATTACAATCATTTTACCTTATAAGGGCATTACGGTCATTTTACC
1 ATTACAATCATTTTACCTTATAAGGGCATTACGGTCATTTTACC
35826774 TATTTTAGGG
Statistics
Matches: 107, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
79 1 0.01
80 64 0.60
81 40 0.37
82 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (81 bp):
ATTACAATCATTTTACCTTATAAGGGCATTACGGTCATTTTACCCTACAGGGACATTACGGTCAT
TTTACACCACAGGGGC
Found at i:35826713 original size:107 final size:107
Alignment explanation
Indices: 35826568--35826772 Score: 295
Period size: 107 Copynumber: 1.9 Consensus size: 107
35826558 CATACAAGAA
* * * **
35826568 TATTACGATCATTTTATCCTACAGGGACATTACAGTCATTTTATCCTACAGGGATATTACGGTCA
1 TATTACGATCATTTTACCCTACAGGGACATTACAGTCATTTTACCCCACAGGGATATTACAATCA
*
35826633 TTTTACAC-TACAGGGGCATTACGGTCATTTTACTTATAGAGG
66 TTTTAC-CTTACAAGGGCATTACGGTCATTTTACTTATAGAGG
* * * *
35826675 TATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCCCACAGGGGTATTACAATCA
1 TATTACGATCATTTTACCCTACAGGGACATTACAGTCATTTTACCCCACAGGGATATTACAATCA
*
35826740 TTTTACCTTATAAGGGCATTACGGTCATTTTAC
66 TTTTACCTTACAAGGGCATTACGGTCATTTTAC
35826773 CTATTTTAGG
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
106 1 0.01
107 85 0.99
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (107 bp):
TATTACGATCATTTTACCCTACAGGGACATTACAGTCATTTTACCCCACAGGGATATTACAATCA
TTTTACCTTACAAGGGCATTACGGTCATTTTACTTATAGAGG
Found at i:35826745 original size:27 final size:27
Alignment explanation
Indices: 35826548--35826773 Score: 229
Period size: 27 Copynumber: 8.4 Consensus size: 27
35826538 GAGCATAATT
* * **
35826548 GTCATTTTACCATACAAGAATATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * ** *
35826575 ATCATTTTATCCTACAGGGACATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* *
35826602 GTCATTTTATCCTACAGGGATATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
35826629 GTCATTTTACACTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
35826656 GTCATTTTA-CTTATAGAGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
35826682 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
35826709 GTCATTTTACCCCACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* * * * *
35826736 ATCATTTTACCTTATAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
35826763 GTCATTTTACC
1 GTCATTTTACC
35826774 TATTTTAGGG
Statistics
Matches: 164, Mismatches: 34, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 21 0.13
27 143 0.87
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:35827051 original size:132 final size:132
Alignment explanation
Indices: 35826814--35827072 Score: 437
Period size: 132 Copynumber: 2.0 Consensus size: 132
35826804 CCTCCGAAGG
35826814 TCTACAATCGCCTCGAACGACACAGATAACCAAAATGATCATAACGATGTAAATAGGCCCAAGGC
1 TCTACAATCGCCTCGAACGACACAGATAACCAAAATGATCATAACGATGTAAATAGGCCCAAGGC
*
35826879 CCATTACTCGGCCCAAGTGGGCCCACACGCTCGCGTGGCCCATTTAGCCCAAATTTAGTTACAAA
66 CCATTACTCGGCCCAAGTGGGCCCACACGCTCGCGTGGCCCATTTAGCCCAAATTTACTTACAAA
35826944 GT
131 GT
* * ** * * *
35826946 TCTACAATCGCCTCGAATGATACAGATAACTTAAATGATCATAACGGTGTAAATGGGCCCGAGGC
1 TCTACAATCGCCTCGAACGACACAGATAACCAAAATGATCATAACGATGTAAATAGGCCCAAGGC
*
35827011 CCATTACTCGGCCCAAGTGGGCCCACACGCTCGTGTGGCCCATTTAGCCCAAATTTACTTAC
66 CCATTACTCGGCCCAAGTGGGCCCACACGCTCGCGTGGCCCATTTAGCCCAAATTTACTTAC
35827073 GGCTATGTGA
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 118 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (132 bp):
TCTACAATCGCCTCGAACGACACAGATAACCAAAATGATCATAACGATGTAAATAGGCCCAAGGC
CCATTACTCGGCCCAAGTGGGCCCACACGCTCGCGTGGCCCATTTAGCCCAAATTTACTTACAAA
GT
Found at i:35832802 original size:39 final size:39
Alignment explanation
Indices: 35832776--35832887 Score: 206
Period size: 39 Copynumber: 2.9 Consensus size: 39
35832766 TTCCAGTACG
*
35832776 TAGCCTGCGGACCTCAAGTCCGGATATATTTCCAGCATA
1 TAGCCTGCGGACCTCATGTCCGGATATATTTCCAGCATA
35832815 TAGCCTGCGGACCTCATGTCCGGATATATTTCCAGCATA
1 TAGCCTGCGGACCTCATGTCCGGATATATTTCCAGCATA
*
35832854 TAGCCTGCAGACCTCATGTCCGGATATATTTCCA
1 TAGCCTGCGGACCTCATGTCCGGATATATTTCCA
35832888 ATCTCATATA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (39 bp):
TAGCCTGCGGACCTCATGTCCGGATATATTTCCAGCATA
Found at i:35854374 original size:40 final size:39
Alignment explanation
Indices: 35854337--35854511 Score: 178
Period size: 40 Copynumber: 4.5 Consensus size: 39
35854327 ATATCCGGAC
*
35854337 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAGTTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAA-ATCCGGGT
* * *
35854377 TAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
35854417 TAAGTCCCGAAGGCATTCGTGCGAGTTA-TTAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
35854456 TAAGTCCGAAGGCA-TTGTGTGAGTTACTAAA-CCGGGC
1 TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
35854493 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
35854512 AACGAGGAGC
Statistics
Matches: 115, Mismatches: 15, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
37 19 0.17
38 21 0.18
39 18 0.16
40 55 0.48
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:35854427 original size:80 final size:77
Alignment explanation
Indices: 35854290--35854511 Score: 225
Period size: 80 Copynumber: 2.8 Consensus size: 77
35854280 TTGAATGCTG
* * * * * *
35854290 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAG-CCCGAAGGCTTTGTGCGAGGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
35854354 TGTGCGAGATA-CAA
63 TGTGCGAGATATCAA
*
35854368 GTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 --TCCGGGTTAAG-CCCGAAGG-CTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCAT
* * *
35854433 TCGTGCGAGTTATTAA
62 TTGTGCGAGATATCAA
* * * * *
35854449 TCCGGGTTAAGTCCGAAGGCATTGTGTGAGTTACTAAA-CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
35854512 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
76 22 0.18
77 16 0.13
78 7 0.06
79 12 0.10
80 51 0.42
81 13 0.11
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (77 bp):
TCCGGGTTAAGCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATATCAA
Found at i:35854544 original size:77 final size:79
Alignment explanation
Indices: 35854370--35854544 Score: 180
Period size: 76 Copynumber: 2.3 Consensus size: 79
35854360 AGATACAAGT
** * *
35854370 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAATCCCGAAGGCCATTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTC
** * *
35854435 GTGCGAGTTATTAA
66 GAACGAGTGACTAA
* * * * *
35854449 TCCGGGTTAAGT-CCGAAGG-CATTGTGTGAGTTACTAAA-CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAATCCCGAAGGCCATTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTC
35854511 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTA-A
35854526 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
35854545 TACGTGATTT
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
75 1 0.01
76 35 0.43
77 27 0.33
78 7 0.09
79 11 0.14
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAATCCCGAAGGCCATTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAA
Found at i:35858013 original size:46 final size:48
Alignment explanation
Indices: 35857958--35858078 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 48
35857948 TGATATGTGT
* * *
35857958 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATAGACAA
* * *
35858004 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATAGACAA
* *
35858052 GCTAGTGTAAGACCTATCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
35858079 GCGTCAACTT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
46 38 0.58
47 1 0.02
48 26 0.40
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATAGACAA
Found at i:35858159 original size:49 final size:49
Alignment explanation
Indices: 35857961--35858270 Score: 212
Period size: 49 Copynumber: 6.5 Consensus size: 49
35857951 TATGTGTGCT
* * * *
35857961 AGTGTAAGACATGTCTGGGACAT-GCATCGGCATTG--AGACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGCC
* * * * * * * * *
35858007 AGTGTAAGACATGTCTGGGACAT-GCATTGGCCTCGAGATAT-ACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGA-GAGCC
* * * * * *
35858055 AGTGTAAGACCTATCTGGGACATGGCGTCAAC-TTG-T---TGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGCC
35858099 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGCC
* ** * * * * **
35858148 AGTGTAAGACCTGTTTGGGACACAGCATCGGCCTTGATATATGAAAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGCC
* * **
35858197 AGTGTAAGACCTATCTGGGACATGGCATCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGCC
* *
35858244 AGTGTAAGATCATGTCTAGGACATGGC
1 AGTGTAAGA-CCTGTCTGGGACATGGC
35858271 GTCAGTATCT
Statistics
Matches: 205, Mismatches: 48, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
44 31 0.15
45 3 0.01
46 33 0.16
47 14 0.07
48 43 0.21
49 81 0.40
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGCC
Found at i:35858219 original size:142 final size:139
Alignment explanation
Indices: 35857952--35858270 Score: 392
Period size: 142 Copynumber: 2.2 Consensus size: 139
35857942 ATTGGGTGAT
* *
35857952 ATGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCATTGAGACGAGAGCTAGTGTAAGA
1 ATGTGTGC-AGTGTAAGACATGTCTGGGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGA
* *
35858016 CATGTCTGGGACATGCATTGGCCTCGAGATATACAAGCTAGTGTAAGACCTATCTGGGACATGGC
65 CATGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTATCTGGGACATGGC
*
35858081 GTCAAC-TTG
130 ATCAACTTTG
* * *
35858090 TTGTGTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAGAGCCAGTGTAA
1 ATGTGTG-CAGTGTAAGACATGTCTGGGACATGGCATCGACATTG--AGACGAGAGCCAGTGTAA
* * * * *
35858155 GACCTGTTTGGGACACAGCATCGGCCTTGATATATGA-AAGTTAGTGTAAGACCTATCTGGGACA
63 GACATGTCTGGGACA-AGCATCGGCCTCGAGATAT-ACAAGCTAGTGTAAGACCTATCTGGGACA
*
35858219 TGGCATCGACTTTG
126 TGGCATCAACTTTG
*
35858233 ATGTGCTAGCCAGTGTAAGATCATGTCTAGGACATGGC
1 ATGTG-T-G-CAGTGTAAGA-CATGTCTGGGACATGGC
35858271 GTCAGTATCT
Statistics
Matches: 153, Mismatches: 18, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
138 28 0.18
139 12 0.08
141 29 0.19
142 49 0.32
143 8 0.05
144 1 0.01
145 11 0.07
146 15 0.10
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (139 bp):
ATGTGTGCAGTGTAAGACATGTCTGGGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGAC
ATGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTATCTGGGACATGGCA
TCAACTTTG
Found at i:35861786 original size:43 final size:43
Alignment explanation
Indices: 35861719--35861836 Score: 150
Period size: 43 Copynumber: 2.7 Consensus size: 43
35861709 TAAGCTTGTA
* *
35861719 CAATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATAT
1 CAATGCCAACGTCCCAGATGTGGTCTTACATGTAAATCAAA-AC
* * *
35861762 CGATGCC-ACTGTCCCAGATATGGTCTTACACGTAAATCAAAAC
1 CAATGCCAAC-GTCCCAGATGTGGTCTTACATGTAAATCAAAAC
*
35861805 CAATGCCAACGTCCCAGTTGTGGTCTTACATG
1 CAATGCCAACGTCCCAGATGTGGTCTTACATG
35861837 AAAACACATA
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
42 2 0.03
43 52 0.83
44 9 0.14
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGATGTGGTCTTACATGTAAATCAAAAC
Found at i:35868409 original size:7 final size:7
Alignment explanation
Indices: 35868397--35868422 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
35868387 CCATATCTTA
35868397 TTCATGT
1 TTCATGT
35868404 TTCATGT
1 TTCATGT
35868411 TTCATGT
1 TTCATGT
35868418 TTCAT
1 TTCAT
35868423 TTACACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.58
Consensus pattern (7 bp):
TTCATGT
Found at i:35868453 original size:21 final size:22
Alignment explanation
Indices: 35868417--35868460 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
35868407 ATGTTTCATG
35868417 TTTCATTTACACATAT-TCACA
1 TTTCATTTACACATATATCACA
* *
35868438 TTTCATTTCCATATATATCACA
1 TTTCATTTACACATATATCACA
35868460 T
1 T
35868461 AACATTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (22 bp):
TTTCATTTACACATATATCACA
Found at i:35868715 original size:44 final size:44
Alignment explanation
Indices: 35868624--35868753 Score: 133
Period size: 43 Copynumber: 3.0 Consensus size: 44
35868614 AGCTCGTACA
** * *
35868624 ATGCCAACATCCCAGATGTGGTCTTACATGT-AATCA-AATATTG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCACAA-ATCG
*
35868667 ATGCC-ACTATCCTAGACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAAC-ATCCCAGACATGGTCTTACACGTAAATCACAAATCG
* * * *
35868711 ATGCCAACGTCCCAGACGTGGTCTTACACG-AAAACACATATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCACAAATCG
35868754 TGTAACGCCC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.03
43 35 0.48
44 32 0.44
45 4 0.05
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (44 bp):
ATGCCAACATCCCAGACATGGTCTTACACGTAAATCACAAATCG
Found at i:35870785 original size:27 final size:27
Alignment explanation
Indices: 35870714--35870787 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
35870704 CGTACCTGAA
* * * *
35870714 CCCTTATGAGACAAAATAACTATTTTT
1 CCCTTATGAGATAAAATGACAATTTTG
* *
35870741 CCTTTATGTGATAAAATGACAATTTTG
1 CCCTTATGAGATAAAATGACAATTTTG
35870768 CCCTTATGAGATAAAATGAC
1 CCCTTATGAGATAAAATGAC
35870788 TGTAATACCC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35
Consensus pattern (27 bp):
CCCTTATGAGATAAAATGACAATTTTG
Found at i:35870798 original size:27 final size:26
Alignment explanation
Indices: 35870768--35870870 Score: 93
Period size: 27 Copynumber: 3.8 Consensus size: 26
35870758 GACAATTTTG
*
35870768 CCCTTATGAGATAAAATGACTGTAATA
1 CCCTTAT-AGGTAAAATGACTGTAATA
* *
35870795 CCCTCATAGGGTAAAATGA-TCGAAATA
1 CCCTTATA-GGTAAAATGACT-GTAATA
*
35870822 CCCCTATAAGGTAAAATGACTGTAATA
1 CCCTTAT-AGGTAAAATGACTGTAATA
*
35870849 CCTCTGTA-AGGTAAAATAACTG
1 CC-CT-TATAGGTAAAATGACTG
35870871 ATTTTCCCTA
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
26 2 0.03
27 55 0.89
28 3 0.05
29 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (26 bp):
CCCTTATAGGTAAAATGACTGTAATA
Found at i:35875333 original size:47 final size:47
Alignment explanation
Indices: 35875276--35875577 Score: 416
Period size: 47 Copynumber: 6.4 Consensus size: 47
35875266 ATTGATGTAC
* * *
35875276 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
35875323 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
35875372 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
35875419 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
35875466 ACA-TG--TGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
35875511 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
35875558 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
35875578 TCCCGAAGGG
Statistics
Matches: 238, Mismatches: 11, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
44 1 0.00
45 41 0.17
47 155 0.65
49 40 0.17
50 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:35875526 original size:139 final size:142
Alignment explanation
Indices: 35875287--35875556 Score: 422
Period size: 139 Copynumber: 1.9 Consensus size: 142
35875277 AGTATATATA
* * *
35875287 TGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGAAT
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCATATATAT-CGTGATAAGGCCGAAT
* *
35875352 GGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
65 GGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
35875417 GAACATGTGTATG
130 GAACATGTGTATG
* *
35875430 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA-CATGTGTAT-GTGATAAGGCCGAATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCATATATATCGTGATAAGGCCGAATG
*
35875492 GCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGT
66 GCCAATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
35875556 G
130 G
35875557 GAAGTGTATA
Statistics
Matches: 118, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
138 1 0.01
139 76 0.64
141 6 0.05
142 2 0.02
143 33 0.28
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.27
Consensus pattern (142 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCATATATATCGTGATAAGGCCGAATG
GCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
AACATGTGTATG
Found at i:35875538 original size:92 final size:92
Alignment explanation
Indices: 35875285--35875556 Score: 438
Period size: 92 Copynumber: 2.9 Consensus size: 92
35875275 CAAGTATATA
* * *
35875285 TATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT--GTGATAAGGCCGA
35875350 ATGGCCAATGTGATGAATGTGAACATGTG
64 ATGGCCAATGTGATGAATGTGAACATGTG
* *
35875379 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCG
1 TA--TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCG
35875443 AATGGCCAATGTGATGAATGTGAACATGTG
63 AATGGCCAATGTGATGAATGTGAACATGTG
35875473 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
35875538 GGCCAATGTGATGGATGTG
66 GGCCAATGTGATGAATGTG
35875557 GAAGTGTATA
Statistics
Matches: 166, Mismatches: 8, Indels: 10
0.90 0.04 0.05
Matches are distributed among these distances:
91 1 0.01
92 77 0.46
94 46 0.28
96 41 0.25
97 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.27
Consensus pattern (92 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCAATGTGATGAATGTGAACATGTG
Done.