Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 114 of 349
Found at i:35875573 original size:139 final size:141
Alignment explanation
Indices: 35875276--35875577 Score: 416
Period size: 139 Copynumber: 2.1 Consensus size: 141
35875266 ATTGATGTAC
* * * *
35875276 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGA
1 AAGTGTATA-ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCATATATAT-CGTGA
* *
35875341 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAAT
64 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAAT
35875406 GTGATGAATGTGA
129 GTGATGAATGTGA
* * *
35875419 ACATGTGTAT-GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA-CATGTGTAT-GTGA
1 A-A-GTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCATATATATCGTGA
35875480 TAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAA
64 TAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAA
* *
35875544 TGTGATGGATGTGG
128 TGTGATGAATGTGA
35875558 AAGTGTATAAATGTGATAAG
1 AAGTGTAT-AATGTGATAAG
35875578 TCCCGAAGGG
Statistics
Matches: 142, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
137 6 0.04
138 2 0.01
139 86 0.61
141 6 0.04
142 2 0.01
143 34 0.24
144 1 0.01
145 5 0.04
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (141 bp):
AAGTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCATATATATCGTGATA
AGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGT
GATGAATGTGA
Found at i:35878194 original size:40 final size:40
Alignment explanation
Indices: 35878135--35878492 Score: 544
Period size: 40 Copynumber: 9.1 Consensus size: 40
35878125 AGGTCTCGAC
*
35878135 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
35878174 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
35878214 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
35878254 GATG--TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
35878292 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
35878332 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
** * *
35878372 GATGTATCCGAACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
35878412 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * *
35878452 GTTATATCCGGGCTAGGTCCC-AAGAGCAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
35878491 GA
1 GA
35878493 CGTGTATTCG
Statistics
Matches: 293, Mismatches: 23, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
38 38 0.13
39 20 0.07
40 235 0.80
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:35878348 original size:118 final size:119
Alignment explanation
Indices: 35878135--35878492 Score: 558
Period size: 118 Copynumber: 3.0 Consensus size: 119
35878125 AGGTCTCGAC
35878135 GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
1 GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
35878200 GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
66 GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
35878254 GATG-TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
1 GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
*
35878318 GCATTCATGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGT
66 GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
** * * * **
35878372 GATGTATCCGAACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAG
1 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
* * * * * *
35878437 AGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCC-AAGAGCAATCATGCTAGT
65 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
35878491 GA
1 GA
35878493 CGTGTATTCG
Statistics
Matches: 220, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
118 116 0.53
119 23 0.10
120 81 0.37
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:35881883 original size:47 final size:47
Alignment explanation
Indices: 35881831--35882175 Score: 473
Period size: 47 Copynumber: 7.3 Consensus size: 47
35881821 TGTACAAGTA
* * * *
35881831 TATATATGTGATAGGGCCGAGTGGCTAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
35881878 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
35881927 TGTATGTGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
35881973 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
35882020 TGTATGTGTCATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
35882067 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
35882114 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
35882161 TATAAATGTGATAAG
1 TATATATGTGATAAG
35882176 TCCCGAAGGG
Statistics
Matches: 275, Mismatches: 17, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
46 47 0.17
47 185 0.67
48 3 0.01
49 39 0.14
50 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:35884391 original size:42 final size:43
Alignment explanation
Indices: 35884291--35884403 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 43
35884281 CAACACCGAC
* * * * *
35884291 GTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTATACGTAAATCAATATCGATACCTAT
* *
35884334 GTCCCGGACAAGGTCTTATACG-AAATCAA-ATACGATACCTAT
1 GTCCCAGACATGGTCTTATACGTAAATCAATAT-CGATACCTAT
35884376 GTCCCAGACATGGTCTTATACGTAAATC
1 GTCCCAGACATGGTCTTATACGTAAATC
35884404 TCAATCGAGG
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.03
42 34 0.58
43 23 0.39
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTATACGTAAATCAATATCGATACCTAT
Found at i:35884423 original size:43 final size:42
Alignment explanation
Indices: 35884291--35884448 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 42
35884281 CAACACCGAC
* * * *
35884291 GTCCCAGACATGGTCTTACATGTAAT-TCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTATACGAAATCTC-A-ATCGATGCCTAT
* * * *
35884334 GTCCCGGACAAGGTCTTATACGAAATC-AAATACGATACCTAT
1 GTCCCAGACATGGTCTTATACGAAATCTCAAT-CGATGCCTAT
* **
35884376 GTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCGGT
1 GTCCCAGACATGGTCTTATACG-AAATCTCAATCGATGCCTAT
* ** *
35884419 GTCCCAAACACAGTCTTATACGATATCTCA
1 GTCCCAGACATGGTCTTATACGAAATCTCA
35884449 GATAGTTGTC
Statistics
Matches: 92, Mismatches: 19, Indels: 9
0.77 0.16 0.08
Matches are distributed among these distances:
41 2 0.02
42 36 0.39
43 51 0.55
44 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTATACGAAATCTCAATCGATGCCTAT
Found at i:35892271 original size:94 final size:92
Alignment explanation
Indices: 35892153--35892323 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 92
35892143 TCTCGTAGCC
* * * * *
35892153 GATGCATGTCCTAGACATGTCTTACATTGGCT-TACGT-CTCGAGGCCGATGCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GAGGCCGATGCATGTCCCAGACA
*
35892216 TGTCTTGCACTAGCACTTGTCTCAATGCT
64 TGTCTTACACTAGCACTTGTCTCAATGCT
*
35892245 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCATGTCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAGACA
35892310 TGTCTTACACTAGC
64 TGTCTTACACTAGC
35892324 TCATAATAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 4 0.06
93 13 0.19
94 49 0.72
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCACTTGTCTCAATGCT
Found at i:35892301 original size:47 final size:44
Alignment explanation
Indices: 35892106--35892325 Score: 171
Period size: 46 Copynumber: 4.8 Consensus size: 44
35892096 ATATCTGTGT
* * * *
35892106 CGATGCCATGTCCCAGACATGATCTTACA-TTGACACATCTC-GTAGC
1 CGATG-CATGTCCCAGACATG-TCTTACACTAG-CTC-TCTCAATGGC
* * * *
35892152 CGATGCATGTCCTAGACATGTCTTACATTGGCTTACGTCTCGA-GGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-T-C-TCTCAATGGC
* *
35892198 CGATGCATGTCCCAGACATGTCTTGCACTAGCACTTGTCTCAAT-GC
1 CGATGCATGTCCCAGACATGTCTTACACTAG--C-TCTCTCAATGGC
*
35892244 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-AATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTC-TCAA--TGGC
35892292 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
35892326 ATAATAATCC
Statistics
Matches: 145, Mismatches: 16, Indels: 26
0.78 0.09 0.14
Matches are distributed among these distances:
44 8 0.06
45 21 0.14
46 67 0.46
47 29 0.20
48 20 0.14
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCAATGGC
Found at i:35892333 original size:47 final size:45
Alignment explanation
Indices: 35892195--35892333 Score: 147
Period size: 47 Copynumber: 3.0 Consensus size: 45
35892185 TACGTCTCGA
* * **
35892195 GGCCGATGCATGTCCCAGACATGTCTTGCACTAGCACTTGTCTCAA-T
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC-T-AAT-AATT
* *
35892242 -GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGT
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTAATAAT-T
35892289 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCATAATAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC-TAATAAT
35892334 CCATATGTTA
Statistics
Matches: 79, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
45 2 0.03
46 22 0.28
47 36 0.46
48 19 0.24
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (45 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTAATAATT
Found at i:35893180 original size:14 final size:14
Alignment explanation
Indices: 35893161--35893191 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
35893151 AAAGGGGTGA
35893161 TATCATTTTTCCTT
1 TATCATTTTTCCTT
35893175 TATCATTTTTCCTT
1 TATCATTTTTCCTT
35893189 TAT
1 TAT
35893192 TTACTCCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.65
Consensus pattern (14 bp):
TATCATTTTTCCTT
Found at i:35904680 original size:19 final size:20
Alignment explanation
Indices: 35904643--35904680 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
35904633 ATAAGGTGGT
35904643 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
35904663 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
35904681 GGTGGTACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:35912784 original size:19 final size:20
Alignment explanation
Indices: 35912760--35912797 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
35912750 GGTACCACCA
35912760 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
35912779 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
35912798 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:35913140 original size:92 final size:93
Alignment explanation
Indices: 35913026--35913195 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
35913016 CGCCCTAAGT
* *
35913026 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAA-TGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
35913090 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
35913118 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
35913183 TGAGTTCGGATGC
66 CGAGTTCGGATGC
35913196 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 40 0.56
93 32 0.44
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:35920304 original size:13 final size:13
Alignment explanation
Indices: 35920286--35920312 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
35920276 ACATAACAAT
35920286 ACAAATATACCAA
1 ACAAATATACCAA
35920299 ACAAATATACCAA
1 ACAAATATACCAA
35920312 A
1 A
35920313 TTAATCTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.22, G:0.00, T:0.15
Consensus pattern (13 bp):
ACAAATATACCAA
Found at i:35930607 original size:19 final size:20
Alignment explanation
Indices: 35930565--35930604 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
35930555 CAACAGAATC
*
35930565 TCTTAAAAAATTATTAAATT
1 TCTTAAAAAATTACTAAATT
* *
35930585 TCTTAAAAAGTTGCTAAATT
1 TCTTAAAAAATTACTAAATT
35930605 CTTTATGGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (20 bp):
TCTTAAAAAATTACTAAATT
Found at i:35931579 original size:28 final size:29
Alignment explanation
Indices: 35931518--35931580 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
35931508 ATATCTCAAA
*
35931518 AATTATAT--ATAACTTTAATTTTATGTAC
1 AATTATATACATAACTTTAATTTGATG-AC
*
35931546 AATTATATACATAATTTTAATTTGATG-C
1 AATTATATACATAACTTTAATTTGATGAC
*
35931574 AGTTATA
1 AATTATA
35931581 AACGTAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 15 0.50
30 15 0.50
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (29 bp):
AATTATATACATAACTTTAATTTGATGAC
Found at i:35931843 original size:33 final size:29
Alignment explanation
Indices: 35931762--35931853 Score: 96
Period size: 30 Copynumber: 3.0 Consensus size: 29
35931752 TAATTTCGAG
*
35931762 AATTAAATAAAATTAAAATTTTATGTATAA
1 AATTACATAAAATTAAAA-TTTATGTATAA
*
35931792 AATTACATAAAATCAAAATTTATGTATATA
1 AATTACATAAAATTAAAATTTATGTATA-A
*
35931822 TAATTACACTTTAAATTAAAATTCT-TGTATAA
1 -AATTACA--TAAAATTAAAATT-TATGTATAA
35931854 TTTTAAAATT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
29 10 0.19
30 17 0.32
31 7 0.13
32 1 0.02
33 17 0.32
34 1 0.02
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.40
Consensus pattern (29 bp):
AATTACATAAAATTAAAATTTATGTATAA
Found at i:35932535 original size:26 final size:26
Alignment explanation
Indices: 35932503--35932555 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
35932493 GAAAAGTTAG
35932503 CTTCCGGTCAATATAAATCGAAAGCC
1 CTTCCGGTCAATATAAATCGAAAGCC
35932529 CTTCCGGTCAATATAAATCGAAAGCC
1 CTTCCGGTCAATATAAATCGAAAGCC
35932555 C
1 C
35932556 CAGAAATTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (26 bp):
CTTCCGGTCAATATAAATCGAAAGCC
Found at i:35939384 original size:23 final size:23
Alignment explanation
Indices: 35939357--35939403 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
35939347 GATTTTCGGT
*
35939357 AAGAAAGTGCATATATGAAATTA
1 AAGAAAGTCCATATATGAAATTA
35939380 AAGAAAGTCCATATATGAAATTA
1 AAGAAAGTCCATATATGAAATTA
35939403 A
1 A
35939404 CTAGTTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.53, C:0.06, G:0.15, T:0.26
Consensus pattern (23 bp):
AAGAAAGTCCATATATGAAATTA
Found at i:35939813 original size:12 final size:12
Alignment explanation
Indices: 35939796--35939838 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
35939786 ATCGGTTTGG
*
35939796 CACGGCCTAGCA
1 CACGGCCTGGCA
35939808 CACGGCCTGGCA
1 CACGGCCTGGCA
35939820 CACGGCCTGGCA
1 CACGGCCTGGCA
*
35939832 CATGGCC
1 CACGGCC
35939839 GTATGTGGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.19, C:0.42, G:0.30, T:0.09
Consensus pattern (12 bp):
CACGGCCTGGCA
Found at i:35955194 original size:18 final size:18
Alignment explanation
Indices: 35955171--35955207 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
35955161 ATGTGACCTA
35955171 GCTACATCATAATGTCTT
1 GCTACATCATAATGTCTT
35955189 GCTACATCATAATGTCTT
1 GCTACATCATAATGTCTT
35955207 G
1 G
35955208 TAGCTCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (18 bp):
GCTACATCATAATGTCTT
Found at i:35959033 original size:13 final size:13
Alignment explanation
Indices: 35959015--35959041 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
35959005 GCTCGGCAGG
35959015 GACACGCCCATGT
1 GACACGCCCATGT
35959028 GACACGCCCATGT
1 GACACGCCCATGT
35959041 G
1 G
35959042 CGATTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:35961306 original size:31 final size:31
Alignment explanation
Indices: 35961268--35961331 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
35961258 GCTGGCTCAA
*
35961268 GGACTAATTTTCAAAACTGTTAAAGGTTTAG
1 GGACTAATTTACAAAACTGTTAAAGGTTTAG
35961299 GGACTAATTTACAAAACTGTTAAAGGTTTAG
1 GGACTAATTTACAAAACTGTTAAAGGTTTAG
35961330 GG
1 GG
35961332 TTTTTCTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (31 bp):
GGACTAATTTACAAAACTGTTAAAGGTTTAG
Found at i:35966616 original size:45 final size:42
Alignment explanation
Indices: 35966563--35966663 Score: 123
Period size: 45 Copynumber: 2.3 Consensus size: 42
35966553 CGATATGTGT
* *
35966563 TTTTGTGTAAGACCATGTCCGGGACATTAGCATCG-ACTTTTGA
1 TTTTGTGTAAGACCATGTCCGGAACATCAGCATCGTA--TTTGA
* *
35966606 TTTTACGTGTAAGACCATGTCTGGAACATCGGCATCGTATTTGA
1 TTTT--GTGTAAGACCATGTCCGGAACATCAGCATCGTATTTGA
35966650 TTTTGTGTAAGACC
1 TTTTGTGTAAGACC
35966664 TTCTCTGGGA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
42 10 0.20
43 4 0.08
44 9 0.18
45 27 0.53
46 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (42 bp):
TTTTGTGTAAGACCATGTCCGGAACATCAGCATCGTATTTGA
Found at i:35966671 original size:42 final size:44
Alignment explanation
Indices: 35966553--35966690 Score: 124
Period size: 42 Copynumber: 3.2 Consensus size: 44
35966543 ACATAGGATC
* * * * * * *
35966553 CGATATGTG-TTTTTGTGTAAGACCATGTCCGGGACATTAGCAT
1 CGATATTTGATTTTAGTGTAAGACCATCTCTGGAACAGTGGCAT
*
35966596 CGACT-TTTGATTTTACGTGTAAGACCATGTCTGGAACA-TCGGCAT
1 CGA-TATTTGATTTTA-GTGTAAGACCATCTCTGGAACAGT-GGCAT
* *
35966641 CG-TATTTGATTTT-GTGTAAGACCTTCTCTGGGACAGTGGCAT
1 CGATATTTGATTTTAGTGTAAGACCATCTCTGGAACAGTGGCAT
35966683 CGATATTT
1 CGATATTT
35966691 TTTTACATAT
Statistics
Matches: 80, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
42 26 0.32
43 13 0.16
44 15 0.19
45 26 0.32
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.36
Consensus pattern (44 bp):
CGATATTTGATTTTAGTGTAAGACCATCTCTGGAACAGTGGCAT
Found at i:35966685 original size:87 final size:85
Alignment explanation
Indices: 35966563--35966725 Score: 202
Period size: 87 Copynumber: 1.9 Consensus size: 85
35966553 CGATATGTGT
* * * * *
35966563 TTTTGTGTAAGACCATGTCCGGGACATTAGCATCGACT-TTTGATTTTACGTGTAAGACCATGTC
1 TTTTGTGTAAGACCATCTCCGGGACAGTAGCATCGA-TATTT--TTTTACATATAAGACCACGTC
35966627 TGGAACATCGGCATCGTATTTGA
63 TGGAACATCGGCATCGTATTTGA
* * *
35966650 TTTTGTGTAAGACCTTCTCTGGGACAGTGGCATCGATATTTTTTTACATATAAGACCACGTCTGG
1 TTTTGTGTAAGACCATCTCCGGGACAGTAGCATCGATATTTTTTTACATATAAGACCACGTCTGG
* *
35966715 GACGTCGGCAT
66 AACATCGGCAT
35966726 TGTACGAGCT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 30 0.46
86 1 0.02
87 34 0.52
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.34
Consensus pattern (85 bp):
TTTTGTGTAAGACCATCTCCGGGACAGTAGCATCGATATTTTTTTACATATAAGACCACGTCTGG
AACATCGGCATCGTATTTGA
Found at i:35968632 original size:12 final size:12
Alignment explanation
Indices: 35968612--35968642 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
35968602 TTTGAGTGAT
35968612 TTAAGGAGGAAA
1 TTAAGGAGGAAA
*
35968624 TTAATGAGGAAA
1 TTAAGGAGGAAA
35968636 TTAAGGA
1 TTAAGGA
35968643 ACTTGGGAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.29, T:0.23
Consensus pattern (12 bp):
TTAAGGAGGAAA
Found at i:35969047 original size:30 final size:30
Alignment explanation
Indices: 35968997--35969053 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
35968987 TTTACAAGCA
*
35968997 TAAGGGCAAAATCATAATTTTTGTAAAGTC
1 TAAGGGCAAAATCATAATTTTTCTAAAGTC
*
35969027 TAAGGGCAAAAT-AGTCATTTTTCTAAA
1 TAAGGGCAAAATCA-TAATTTTTCTAAA
35969054 TTGTGAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (30 bp):
TAAGGGCAAAATCATAATTTTTCTAAAGTC
Found at i:35969771 original size:49 final size:49
Alignment explanation
Indices: 35969681--35969797 Score: 123
Period size: 49 Copynumber: 2.4 Consensus size: 49
35969671 CTTGTTGTGT
* *
35969681 GTCAGTGTTAGACCTGTCTGAGACATGGCATCGACACCGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGAGACATGGCATCGACACCGATAGATGAAA
* * * *
35969730 G-CTAGTGTAAGACTTGTTTGGGACATGGCATC-AGC-CTCGATATATGAAA
1 GTC-AGTGTAAGACCTGTCTGAGACATGGCATCGA-CAC-CGATAGATGAAA
*
35969779 GTCAGTGTAAGGCCTGTCT
1 GTCAGTGTAAGACCTGTCT
35969798 AGGATACGGC
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
48 3 0.05
49 51 0.93
50 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGAGACATGGCATCGACACCGATAGATGAAA
Found at i:35976570 original size:40 final size:41
Alignment explanation
Indices: 35976486--35976579 Score: 122
Period size: 40 Copynumber: 2.3 Consensus size: 41
35976476 ATCTCGACCT
* **
35976486 CGCACACTAAGTG-TCATATATAGCCAAAGCTAATCCAATT
1 CGCACACTAAGTGCTCATATATAGCCAAAGATAATCCAAAA
35976526 CGCACACTAAGTGCTC-TATATAGCCAAAGAT-ATCTCAAAA
1 CGCACACTAAGTGCTCATATATAGCCAAAGATAATC-CAAAA
*
35976566 CGCACACAAAGTGC
1 CGCACACTAAGTGC
35976580 CAAAATTAGT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
39 3 0.06
40 43 0.90
41 2 0.04
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (41 bp):
CGCACACTAAGTGCTCATATATAGCCAAAGATAATCCAAAA
Found at i:35983866 original size:41 final size:41
Alignment explanation
Indices: 35983812--35983890 Score: 124
Period size: 41 Copynumber: 1.9 Consensus size: 41
35983802 AATGCTAACG
*
35983812 CATAGCCGAAGCTAT-TATAATCTCACACACTAAGTGCCTTC
1 CATAGCCGAAGCTATCT-TAACCTCACACACTAAGTGCCTTC
*
35983853 CATAGCTGAAGCTATCTTAACCTCACACACTAAGTGCC
1 CATAGCCGAAGCTATCTTAACCTCACACACTAAGTGCC
35983891 ATATATAGCC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 34 0.97
42 1 0.03
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (41 bp):
CATAGCCGAAGCTATCTTAACCTCACACACTAAGTGCCTTC
Found at i:35983899 original size:41 final size:41
Alignment explanation
Indices: 35983812--35983900 Score: 117
Period size: 41 Copynumber: 2.2 Consensus size: 41
35983802 AATGCTAACG
* * *
35983812 CATAGCCGAAGCTATTATAATCTCACACACTAAGTGCCTTC
1 CATAGCCGAAGCTATTATAACCTCACACACTAAGTGCCATA
*
35983853 CATAGCTGAAGCTATCT-TAACCTCACACACTAAGTGCCATA
1 CATAGCCGAAGCTAT-TATAACCTCACACACTAAGTGCCATA
*
35983894 TATAGCC
1 CATAGCC
35983901 AAAACTAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 40 0.98
42 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (41 bp):
CATAGCCGAAGCTATTATAACCTCACACACTAAGTGCCATA
Found at i:35984880 original size:16 final size:18
Alignment explanation
Indices: 35984849--35984881 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
35984839 AACTTGTCAC
35984849 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
35984867 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
35984882 AATTCATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:35986035 original size:21 final size:21
Alignment explanation
Indices: 35986011--35986059 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
35986001 ACAATGAATC
35986011 CGGCTTCTGAGATGGATCAAT
1 CGGCTTCTGAGATGGATCAAT
35986032 CGGCTTCTGAGATGGATCAAT
1 CGGCTTCTGAGATGGATCAAT
*
35986053 CGACTTC
1 CGGCTTC
35986060 CCTTGAGTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (21 bp):
CGGCTTCTGAGATGGATCAAT
Found at i:35999542 original size:36 final size:36
Alignment explanation
Indices: 35999495--35999570 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
35999485 CAAATAGCTA
35999495 ATACACTAGAAAACCCTGCACAATAATCAATTAATC
1 ATACACTAGAAAACCCTGCACAATAATCAATTAATC
35999531 ATACACTAGAAAACCCTGCACAATAATCAATTAATC
1 ATACACTAGAAAACCCTGCACAATAATCAATTAATC
35999567 ATAC
1 ATAC
35999571 CTTCACTCCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.47, C:0.25, G:0.05, T:0.22
Consensus pattern (36 bp):
ATACACTAGAAAACCCTGCACAATAATCAATTAATC
Found at i:36005321 original size:14 final size:14
Alignment explanation
Indices: 36005304--36005337 Score: 54
Period size: 12 Copynumber: 2.6 Consensus size: 14
36005294 TATTGAATTA
36005304 ATGATTATTTTTGT
1 ATGATTATTTTTGT
36005318 ATGA--ATTTTTGT
1 ATGATTATTTTTGT
36005330 ATGATTAT
1 ATGATTAT
36005338 ATTGATATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
12 12 0.67
14 6 0.33
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (14 bp):
ATGATTATTTTTGT
Found at i:36008343 original size:84 final size:84
Alignment explanation
Indices: 36008242--36008411 Score: 340
Period size: 84 Copynumber: 2.0 Consensus size: 84
36008232 AACTAGGCTA
36008242 AGCTCAAGAGCTTAGAGGACCACAGTTGGATAAGGGAAAGGAAAAAGTTATCGAATAGCCGCCGA
1 AGCTCAAGAGCTTAGAGGACCACAGTTGGATAAGGGAAAGGAAAAAGTTATCGAATAGCCGCCGA
36008307 AATCGTTCGACCACATCCG
66 AATCGTTCGACCACATCCG
36008326 AGCTCAAGAGCTTAGAGGACCACAGTTGGATAAGGGAAAGGAAAAAGTTATCGAATAGCCGCCGA
1 AGCTCAAGAGCTTAGAGGACCACAGTTGGATAAGGGAAAGGAAAAAGTTATCGAATAGCCGCCGA
36008391 AATCGTTCGACCACATCCG
66 AATCGTTCGACCACATCCG
36008410 AG
1 AG
36008412 GTAAGTTTTC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.16
Consensus pattern (84 bp):
AGCTCAAGAGCTTAGAGGACCACAGTTGGATAAGGGAAAGGAAAAAGTTATCGAATAGCCGCCGA
AATCGTTCGACCACATCCG
Found at i:36008803 original size:40 final size:39
Alignment explanation
Indices: 36008613--36008796 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
36008603 CGAATGATGT
* * * *
36008613 CCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
36008653 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
36008693 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
36008731 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36008772 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36008797 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36008818 original size:79 final size:77
Alignment explanation
Indices: 36008646--36008829 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 77
36008636 GTGCTAAGTG
* *
36008646 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
36008711 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * * *
36008725 ACTAAATTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCT-ATAACCGGGCTATGTCCCGAA
1 ACTATA-TCCGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
36008789 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
36008804 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
36008830 TACGTGATTC
Statistics
Matches: 87, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 28 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:36016803 original size:41 final size:41
Alignment explanation
Indices: 36016758--36016842 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
36016748 TTACTCTGTT
*
36016758 TCTTTTATATGAAAATAGACTCATTAAGCTTTAATTTTATA
1 TCTTTTATATGAAAATAGACTCATTAAGCTTTAAGTTTATA
36016799 TCTTTTATATGAAAATAGACTCATTAAGCTTTAAGTTTATA
1 TCTTTTATATGAAAATAGACTCATTAAGCTTTAAGTTTATA
36016840 TCT
1 TCT
36016843 CATTCAGTCT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (41 bp):
TCTTTTATATGAAAATAGACTCATTAAGCTTTAAGTTTATA
Found at i:36027957 original size:27 final size:27
Alignment explanation
Indices: 36027889--36027947 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
36027879 CTGGTTTAGT
*
36027889 AAATGACCATAATGCCCCTGTAAGGTA
1 AAATGACCGTAATGCCCCTGTAAGGTA
*
36027916 AAATGACCGTAATGCCCCTGTATGGTA
1 AAATGACCGTAATGCCCCTGTAAGGTA
*
36027943 GAATG
1 AAATG
36027948 GCGATTATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AAATGACCGTAATGCCCCTGTAAGGTA
Found at i:36030899 original size:40 final size:40
Alignment explanation
Indices: 36030805--36031024 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
36030795 TGGATGATAA
* * **
36030805 CCGGGCTATGTCCCGAAGGCATTT-TGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTACAT
* *
36030846 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
36030886 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * * * *
36030926 CCAGGCTAAGTCCCGAAGGCAATGGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
36030966 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
36031005 CC-GGTTAAATCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCA
36031025 CTTGGCTGGG
Statistics
Matches: 156, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
38 17 0.11
39 14 0.09
40 99 0.63
41 23 0.15
42 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:36031903 original size:57 final size:57
Alignment explanation
Indices: 36031815--36031923 Score: 218
Period size: 57 Copynumber: 1.9 Consensus size: 57
36031805 GTAATCGAAC
36031815 CCTTCCATATATGTATAGATTCCTTTTCGAGTCTAGTTTCTATAGAAACAAAGAAGT
1 CCTTCCATATATGTATAGATTCCTTTTCGAGTCTAGTTTCTATAGAAACAAAGAAGT
36031872 CCTTCCATATATGTATAGATTCCTTTTCGAGTCTAGTTTCTATAGAAACAAA
1 CCTTCCATATATGTATAGATTCCTTTTCGAGTCTAGTTTCTATAGAAACAAA
36031924 CGACATAAGT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (57 bp):
CCTTCCATATATGTATAGATTCCTTTTCGAGTCTAGTTTCTATAGAAACAAAGAAGT
Found at i:36032221 original size:21 final size:22
Alignment explanation
Indices: 36032173--36032224 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
36032163 GTTAACCAGC
36032173 TTGTCTG-G-AAATTTTTTAAA
1 TTGTCTGTGAAAATTTTTTAAA
* *
36032193 TGGACTGTGAAAATTTTTT-AA
1 TTGTCTGTGAAAATTTTTTAAA
36032214 TTGTCTGTGAA
1 TTGTCTGTGAA
36032225 CCCCTCGTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 5 0.19
21 12 0.46
22 9 0.35
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (22 bp):
TTGTCTGTGAAAATTTTTTAAA
Found at i:36032905 original size:34 final size:34
Alignment explanation
Indices: 36032857--36032923 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
36032847 CTTGAGTATG
36032857 GGTCCGTAAGGAGGTTGTATATAAGTATTTAATA
1 GGTCCGTAAGGAGGTTGTATATAAGTATTTAATA
*
36032891 GGTCTGTAAGGAGGTTGTATATAAGTATTTAAT
1 GGTCCGTAAGGAGGTTGTATATAAGTATTTAAT
36032924 CATGCAAGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.37
Consensus pattern (34 bp):
GGTCCGTAAGGAGGTTGTATATAAGTATTTAATA
Found at i:36037397 original size:27 final size:27
Alignment explanation
Indices: 36037367--36037707 Score: 425
Period size: 27 Copynumber: 12.7 Consensus size: 27
36037357 TTAGTTTACC
*
36037367 AAATTACCAAAATACCCTTTGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** **
36037394 AAATTAGTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
36037421 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
36037448 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
36037475 AAATCACCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCT-TGGTTTGTA
* * *
36037502 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
36037529 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
36037556 AAATTACCAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
36037583 AAATTACCAAAATACCC-TGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
36037609 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
36037636 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
36037663 AAATTACCAAAATACCGTTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
*
36037690 AAATTACTAAAATACCCT
1 AAATTACCAAAATACCCT
36037708 CAACCTGTAA
Statistics
Matches: 268, Mismatches: 43, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
26 27 0.10
27 238 0.89
28 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:36037717 original size:54 final size:54
Alignment explanation
Indices: 36037367--36037760 Score: 309
Period size: 54 Copynumber: 7.3 Consensus size: 54
36037357 TTAGTTTACC
* ** ** * **
36037367 AAATTACCAAAATACCCTTTGTTTGTAAAATTAGTAAAATACCCTTGGTTTACA
1 AAATTACTAAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTTGATTTGTA
* * * * * *
36037421 AAATTACCAAAATACCC-CTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATA
1 AAATTACTAAAATACCCTC-AGTTTGTAAAATTACCAAAATACCCTTGATTTGTA
* * * * * * *
36037475 AAATCACCAAAATA-CCTCTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATA
1 AAATTACTAAAATACCCTC-AGTTTGTAAAATTACCAAAATACCCTTGATTTGTA
* * * *
36037529 AAATCACCAAAATACCC-CTGGTTTGTAAAATTACCAAAATACCCTTTG-TTTATA
1 AAATTACTAAAATACCCTC-AGTTTGTAAAATTACCAAAATACCC-TTGATTTGTA
* * *
36037583 AAATTACCAAAATACCCT-GGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACTAAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTTGA-TTTGTA
* *
36037636 AAATTA-TCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCGTTGATTTGTG
1 AAATTACT-AAAATACCCTC-AGTTTGTAAAATTACCAAAATACCCTTGATTTGTA
*** *** * *
36037690 AAATTACTAAAATACCCTCAACCTGTAAAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTTGATTTGTA
* *
36037744 AAATTACCAAATTACCC
1 AAATTACTAAAATACCC
36037761 CTAATTTACA
Statistics
Matches: 299, Mismatches: 28, Indels: 26
0.85 0.08 0.07
Matches are distributed among these distances:
52 1 0.00
53 47 0.16
54 243 0.81
55 8 0.03
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACTAAAATACCCTCAGTTTGTAAAATTACCAAAATACCCTTGATTTGTA
Found at i:36037720 original size:27 final size:27
Alignment explanation
Indices: 36037690--36037760 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
36037680 TTGATTTGTG
36037690 AAATTACTAAAATACCCTCAACCTGTA
1 AAATTACTAAAATACCCTCAACCTGTA
* * * *
36037717 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCAACCTGTA
* *
36037744 AAATTACCAAATTACCC
1 AAATTACTAAAATACCC
36037761 CTAATTTACA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCAACCTGTA
Found at i:36037721 original size:81 final size:81
Alignment explanation
Indices: 36037367--36037762 Score: 404
Period size: 81 Copynumber: 4.9 Consensus size: 81
36037357 TTAGTTTACC
* * * **
36037367 AAATTACCAAAATACCCTTTGTTTGTAAAATTAGT-AAAATACCCTTGGTTTACAAAATTACCAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATACCCCTGGTTTGTAAAATTACCAA
36037431 AATACCCCTGGTTTGTA
65 AATACCCCTGGTTTGTA
* * * * * * * * * *
36037448 AAATTACTAGAATACCCTTGGTTTATAAAATCACCAAAATACCTCTGGTTTGTAAAATTACTAGA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAAA
* *
36037513 ATACCCTTGGTTTATA
66 ATACCCCTGGTTTGTA
* * * * * *
36037529 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTTGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAAA
36037594 ATA-CCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
*
36037609 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAAA
** * *
36037674 ATACCGTTGATTTGTG
66 ATACCCCTGGTTTGTA
* *** ** **
36037690 AAATTACTAAAATA-CCCTCAACCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCA
1 AAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCT-GGTTTGTAAAATTACCA
*
36037753 AATTACCCCT
64 AAATACCCCT
36037763 AATTTACAGA
Statistics
Matches: 261, Mismatches: 50, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
80 80 0.31
81 181 0.69
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTGGTTTGTAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:36037845 original size:27 final size:27
Alignment explanation
Indices: 36037802--36037936 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
36037792 TTTATAAAAT
36037802 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
36037829 TACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
36037856 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** * *
36037883 TATTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
36037910 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
36037936 T
1 T
36037937 TACCATTTTA
Statistics
Matches: 96, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 3 0.03
27 93 0.97
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:36038229 original size:27 final size:26
Alignment explanation
Indices: 36038185--36038235 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
36038175 CTCGCTGCAA
*
36038185 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
36038212 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
36038236 GGCAGTCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:36038274 original size:67 final size:67
Alignment explanation
Indices: 36038166--36038341 Score: 289
Period size: 67 Copynumber: 2.6 Consensus size: 67
36038156 GAGGAAGCGT
36038166 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCGTCACAA
36038231 TA
66 TA
* * * *
36038233 TCTGGCAGTCTCGTTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTTGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCGTCACAA
36038298 TA
66 TA
* * *
36038300 TCTGGCAACCTCGCTGCAATCTGGTGACTTCGCCACATATAT
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATAT
36038342 ATATCTGTTC
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 100 1.00
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCGTCACAA
TA
Found at i:36038394 original size:27 final size:27
Alignment explanation
Indices: 36038342--36038455 Score: 185
Period size: 27 Copynumber: 4.3 Consensus size: 27
36038332 CCACATATAT
* * * *
36038342 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACTTCGTCACA
36038368 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACTTCGTCACA
36038395 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACTTCGTCACA
36038422 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACTTCGTCACA
36038449 ATATCTG
1 ATATCTG
36038456 GCAGCCTCGC
Statistics
Matches: 83, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
26 8 0.10
27 75 0.90
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACTTCGTCACA
Found at i:36038583 original size:6 final size:6
Alignment explanation
Indices: 36038574--36038741 Score: 139
Period size: 6 Copynumber: 27.3 Consensus size: 6
36038564 TTGCATTCAC
* *
36038574 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG GTTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
36038623 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * * *
36038673 ATTCTG ATTCTA ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
36038722 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
36038742 AATGTTTCTT
Statistics
Matches: 130, Mismatches: 18, Indels: 28
0.74 0.10 0.16
Matches are distributed among these distances:
5 8 0.06
6 105 0.81
7 12 0.09
8 5 0.04
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:36038605 original size:25 final size:25
Alignment explanation
Indices: 36038577--36038683 Score: 138
Period size: 25 Copynumber: 4.6 Consensus size: 25
36038567 CATTCACATT
36038577 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
36038602 CTGATTCTGATTCTG------G-TT
1 CTGATTCTGATTCTGTTACCTGATA
36038620 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
* *
36038645 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
36038670 CTGATTCTGATTCT
1 CTGATTCTGATTCT
36038684 AATTTTGATT
Statistics
Matches: 71, Mismatches: 4, Indels: 14
0.80 0.04 0.16
Matches are distributed among these distances:
18 16 0.23
19 1 0.01
24 1 0.01
25 53 0.75
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:36038636 original size:43 final size:42
Alignment explanation
Indices: 36038575--36038678 Score: 172
Period size: 43 Copynumber: 2.4 Consensus size: 42
36038565 TGCATTCACA
36038575 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCT-G
36038618 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG
*
36038660 TTACCTAATTCTGATTCTG
1 TT--CTGATTCTGATTCTG
36038679 ATTCTAATTT
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
42 3 0.05
43 41 0.71
44 14 0.24
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.47
Consensus pattern (42 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:36038643 original size:37 final size:36
Alignment explanation
Indices: 36038578--36038742 Score: 111
Period size: 37 Copynumber: 4.5 Consensus size: 36
36038568 ATTCACATTC
*
36038578 TGATTCTGATT-CTGTTACCTGATACTGATTCTGATTC
1 TGATTCTG-TTACTGATA-CTGATACTGATTCTGATTC
* * * *
36038615 TGGTTCTGATT-CTGATTCTGTTACCTGATACTGATTC
1 TGATTCTG-TTACTGATACTGATA-CTGATTCTGATTC
* * * * *
36038652 TGATTCTGTTACCTAATTCTGATTCTGATTCTAATTT
1 TGATTCTGTTA-CTGATACTGATACTGATTCTGATTC
* * * * *
36038689 TGATTCTGTCACCTGATTCTGATTCTGATTCTCATTT
1 TGATTCTGTTA-CTGATACTGATACTGATTCTGATTC
36038726 TGATTCTAGTT-CTGATA
1 TGATTCT-GTTACTGATA
36038743 ATGTTTCTTA
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
36 12 0.11
37 84 0.79
38 11 0.10
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (36 bp):
TGATTCTGTTACTGATACTGATACTGATTCTGATTC
Found at i:36038670 original size:19 final size:19
Alignment explanation
Indices: 36038648--36038715 Score: 86
Period size: 19 Copynumber: 3.6 Consensus size: 19
36038638 CCTGATACTG
36038648 ATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGTTACCTA
36038667 ATTCTGATTCTGATT--CTA
1 ATTCTGATTCTG-TTACCTA
* * *
36038685 ATTTTGATTCTGTCACCTG
1 ATTCTGATTCTGTTACCTA
36038704 ATTCTGATTCTG
1 ATTCTGATTCTG
36038716 ATTCTCATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
17 1 0.02
18 14 0.33
19 25 0.60
20 2 0.05
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (19 bp):
ATTCTGATTCTGTTACCTA
Found at i:36042545 original size:34 final size:34
Alignment explanation
Indices: 36042502--36042578 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
36042492 TGATTGCCTT
* *
36042502 ACTGATACTGTTACTGTGATGGGCTAAGGCCC-A
1 ACTGATACTGATACTGTAATGGGCTAAGGCCCTA
*
36042535 CACTGATACTGATACTGTAATGGGCTATGGCCCTA
1 -ACTGATACTGATACTGTAATGGGCTAAGGCCCTA
36042570 ACTGATACT
1 ACTGATACT
36042579 AGACTGTCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
34 38 0.97
35 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (34 bp):
ACTGATACTGATACTGTAATGGGCTAAGGCCCTA
Found at i:36047973 original size:40 final size:40
Alignment explanation
Indices: 36047929--36048142 Score: 293
Period size: 40 Copynumber: 5.3 Consensus size: 40
36047919 AACCCAATTA
* * ** *
36047929 CCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* * *
36047969 CCTTCGGGACTTAACTCGAAAATAGCAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
36048009 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* * * *
36048049 CCTTTGGGACTTCACCCGGGAATAACAACTAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* * *
36048089 CCTTTGGGACTTAACCCAGAAATAACAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
36048129 CCTTCGGGACTTAA
1 CCTTCGGGACTTAA
36048143 ACTGGATATA
Statistics
Matches: 153, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 153 1.00
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.19
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
Found at i:36053267 original size:40 final size:40
Alignment explanation
Indices: 36053222--36053413 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
36053212 ATAACCACAA
* * *
36053222 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
36053262 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
36053302 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
36053342 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
36053382 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
36053414 CATATCAAAT
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:36053306 original size:80 final size:80
Alignment explanation
Indices: 36053193--36053412 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
36053183 ACCCAAGTTT
* * * * * * * * *
36053193 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
36053256 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
36053272 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
36053336 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
36053352 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
36053413 TCATATCAAA
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:36068197 original size:27 final size:27
Alignment explanation
Indices: 36068158--36068326 Score: 196
Period size: 27 Copynumber: 6.2 Consensus size: 27
36068148 GTGCATACTC
* * *
36068158 AGTGCTATATAATCAACTCGCACACTT
1 AGTGCTACATAGTCAAATCGCACACTT
* *
36068185 AGTGCTACGTAATCAAATCGCACACTT
1 AGTGCTACATAGTCAAATCGCACACTT
36068212 AGTGCTACATAGTCAAACTCGCACACTT
1 AGTGCTACATAGTCAAA-TCGCACACTT
** * *
36068240 AGTGCCGCATGGTCAATTCGCACACTT
1 AGTGCTACATAGTCAAATCGCACACTT
* **
36068267 AGTGC-ATCATATTCATTTCGCACACTT
1 AGTGCTA-CATAGTCAAATCGCACACTT
*
36068294 AGTGCAACATAGTCAAATCGCACACTT
1 AGTGCTACATAGTCAAATCGCACACTT
36068321 AGTGCT
1 AGTGCT
36068327 GTACATTTTA
Statistics
Matches: 122, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 98 0.80
28 24 0.20
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
AGTGCTACATAGTCAAATCGCACACTT
Found at i:36068295 original size:82 final size:81
Alignment explanation
Indices: 36068170--36068325 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36068160 TGCTATATAA
* *
36068170 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36068235 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36068252 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36068316 CACTTAGTGC
65 CACTTAGTGC
36068326 TGTACATTTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36076113 original size:27 final size:27
Alignment explanation
Indices: 36075994--36076170 Score: 183
Period size: 27 Copynumber: 6.5 Consensus size: 27
36075984 ATATTAAGTC
* * * * *
36075994 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * *
36076021 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
*
36076048 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCAACATAGTCAAA-T
** * *
36076076 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * **
36076103 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAAAT
36076130 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
*
36076157 CACACACTTAGTGC
1 CGCACACTTAGTGC
36076171 TGTACATTTT
Statistics
Matches: 129, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAAAT
Found at i:36076133 original size:82 final size:81
Alignment explanation
Indices: 36076015--36076170 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
36076005 TGCTATATAA
* * *
36076015 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCACA
36076080 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36076097 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCACA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACA
36076161 CACTTAGTGC
65 CACTTAGTGC
36076171 TGTACATTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACAC
ACTTAGTGCCGCATGG
Found at i:36082566 original size:50 final size:51
Alignment explanation
Indices: 36082488--36082616 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
36082478 GACCATGGCA
*
36082488 ACAAGTGATAAGTGATAGCTTCGACTACACTTATCTGATCAAGGA-AAAGTC
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TC
* *
36082539 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATC
* * *
36082589 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
36082617 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATC
Found at i:36082630 original size:31 final size:31
Alignment explanation
Indices: 36082592--36082771 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
36082582 ACAAATGACA
*
36082592 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
36082623 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
36082654 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
36082685 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * * *
36082716 AATGAAAAATGGTAGCTCCGGCTACCTAATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
36082747 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
36082772 AAATGACAAG
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
30 2 0.01
31 133 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:36082947 original size:42 final size:43
Alignment explanation
Indices: 36082891--36083004 Score: 144
Period size: 42 Copynumber: 2.7 Consensus size: 43
36082881 ATGTGATTCA
*
36082891 TGTAAGACCATAGCTAGGCTATGGCATCGA-TATATGAATATG
1 TGTAAGACCATAGCTAGGCTATGGCATCGATTATATGAAGATG
* * *
36082933 TGTAAGACCATAGCTGGGCTAAGGCATC-ATTATGTGAAGATG
1 TGTAAGACCATAGCTAGGCTATGGCATCGATTATATGAAGATG
* *
36082975 TGTAAGACCATAG-TTGAACTATGGCATCGA
1 TGTAAGACCATAGCTAG-GCTATGGCATCGA
36083005 GAAAATGAAG
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 3 0.05
42 58 0.94
43 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (43 bp):
TGTAAGACCATAGCTAGGCTATGGCATCGATTATATGAAGATG
Found at i:36084920 original size:34 final size:34
Alignment explanation
Indices: 36084843--36084908 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
36084833 TGATTGCATT
* * *
36084843 ACTGATGCTGTTACTGTGATGGGCTAAGGCCCAC
1 ACTGATACTGATACTGTAATGGGCTAAGGCCCAC
*
36084877 ACTGATACTGATACTGTAATGGGCTATGGCCC
1 ACTGATACTGATACTGTAATGGGCTAAGGCCC
36084909 TAATTGATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (34 bp):
ACTGATACTGATACTGTAATGGGCTAAGGCCCAC
Found at i:36085572 original size:41 final size:41
Alignment explanation
Indices: 36085515--36085713 Score: 191
Period size: 41 Copynumber: 4.7 Consensus size: 41
36085505 AAAGTACATC
*
36085515 CAGGGGTACCGAAGTACAAACAGGGGCACATCTGTGCAATT
1 CAGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAATT
* * * *
36085556 CAGGGGTACCAAAGTACCAACAAGGGCACGTATGTGCAATT
1 CAGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAATT
* * * * *
36085597 CAGGGGTACCGAAGTACAAATAAGTGTACGTATGTGCAATTCAAATT
1 CAGGGGTACCGAAGTACAAACAGGGGCACATATGTG-----C-AATT
* ** * * *
36085644 CAAGGGTACTAAAGTAAAAACAGGGGCACGTATATGCAATT
1 CAGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAATT
*
36085685 CAGGGGTACCGAAGTACAAATAGGGGCAC
1 CAGGGGTACCGAAGTACAAACAGGGGCAC
36085714 CGAAGTACAA
Statistics
Matches: 128, Mismatches: 24, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
41 95 0.74
42 1 0.01
46 1 0.01
47 31 0.24
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.19
Consensus pattern (41 bp):
CAGGGGTACCGAAGTACAAACAGGGGCACATATGTGCAATT
Found at i:36085715 original size:20 final size:20
Alignment explanation
Indices: 36085686--36085733 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
36085676 TATGCAATTC
*
36085686 AGGGGTACCGAAGTACAAAT
1 AGGGGCACCGAAGTACAAAT
36085706 AGGGGCACCGAAGTACAAAT
1 AGGGGCACCGAAGTACAAAT
36085726 AGGGGCAC
1 AGGGGCAC
36085734 GAATGTGCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.19, G:0.33, T:0.10
Consensus pattern (20 bp):
AGGGGCACCGAAGTACAAAT
Found at i:36094679 original size:22 final size:23
Alignment explanation
Indices: 36094654--36094705 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
36094644 ATTTGCATCA
*
36094654 CATATCAT-ATACCAAAATCAA-C
1 CATATCATCA-ACCAAAACCAAGC
**
36094676 CATAAGATCAACCAAAACCAAGC
1 CATATCATCAACCAAAACCAAGC
36094699 CATATCA
1 CATATCA
36094706 CATGGCTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.50, C:0.29, G:0.04, T:0.17
Consensus pattern (23 bp):
CATATCATCAACCAAAACCAAGC
Found at i:36100379 original size:9 final size:9
Alignment explanation
Indices: 36100365--36100389 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
36100355 AACCATTCAA
36100365 TCATTCATT
1 TCATTCATT
36100374 TCATTCATT
1 TCATTCATT
36100383 TCATTCA
1 TCATTCA
36100390 AAATAATCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (9 bp):
TCATTCATT
Found at i:36102597 original size:20 final size:20
Alignment explanation
Indices: 36102572--36102625 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
36102562 CATGGCCTGC
*
36102572 CCACACGAGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
36102592 CCACACGGGCGTGTCCCAAA
1 CCACACGGGCGTGTCCCAAA
36102612 CCACACGGGCGTGT
1 CCACACGGGCGTGT
36102626 AACCCCTGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.24, C:0.39, G:0.26, T:0.11
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAA
Found at i:36105820 original size:34 final size:34
Alignment explanation
Indices: 36105782--36105854 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
36105772 CATACTGTAC
* *
36105782 TGAAATGTGCTAAGGCCCAGACTACCACTGTTAT
1 TGAAATGGGCTAAGGCCCAGACTACCACTGCTAT
* *
36105816 TGAAATGGGCTCAGGCCCAGACTACTACTGCTAT
1 TGAAATGGGCTAAGGCCCAGACTACCACTGCTAT
36105850 TGAAA
1 TGAAA
36105855 GAGGGACTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (34 bp):
TGAAATGGGCTAAGGCCCAGACTACCACTGCTAT
Found at i:36109749 original size:46 final size:45
Alignment explanation
Indices: 36109692--36109867 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
36109682 TATTTGGGCA
*
36109692 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
36109738 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
36109785 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
36109831 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
36109868 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:36109847 original size:93 final size:93
Alignment explanation
Indices: 36109688--36109859 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
36109678 AGGATATTTG
* * * *
36109688 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
36109753 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
36109781 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
36109846 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
36109860 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:36120377 original size:22 final size:22
Alignment explanation
Indices: 36120349--36120470 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
36120339 TTCCACATCC
36120349 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
36120371 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
36120395 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
36120418 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36120442 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36120465 ATCACA
1 ATCACA
36120471 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36120384 original size:47 final size:47
Alignment explanation
Indices: 36120321--36120915 Score: 876
Period size: 47 Copynumber: 12.6 Consensus size: 47
36120311 CCCTTCGGGA
* * *
36120321 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
36120368 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36120415 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
36120462 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
36120509 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
36120556 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
36120603 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
36120650 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36120699 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36120746 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36120795 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
36120842 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
36120889 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36120916 TATTCAAATA
Statistics
Matches: 520, Mismatches: 22, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 428 0.82
49 90 0.17
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:36122300 original size:85 final size:85
Alignment explanation
Indices: 36122171--36122349 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
36122161 TATTTTATTG
*
36122171 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36122236 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36122256 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36122321 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36122341 CCCATGCTC
1 CCCATGCTC
36122350 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:36123725 original size:40 final size:40
Alignment explanation
Indices: 36123604--36123841 Score: 322
Period size: 39 Copynumber: 6.0 Consensus size: 40
36123594 CGAATACACG
* * * *
36123604 TCACCAGCATGATTGCTCTT-GGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * *
36123643 ACACCAGCACGAATGCTCTTCGGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
36123682 TCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
36123722 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
36123762 TCACTAGCATGAATGCTCTT-TGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
36123801 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
36123840 TC
1 TC
36123842 GTCGAGACCT
Statistics
Matches: 178, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 91 0.51
40 87 0.49
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:36123736 original size:79 final size:79
Alignment explanation
Indices: 36123630--36123841 Score: 302
Period size: 79 Copynumber: 2.7 Consensus size: 79
36123620 TCTTGGGACC
* * * * * *
36123630 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGG-TTTAGCACGGATATATCACTAGCACGA
1 TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGA
36123694 ATGCTCTTCAGAACT
66 ATGCTCTT-AGAACT
* *
36123709 TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGA
1 TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGA
* *
36123774 ATGCTCTTTGGACT
66 ATGCTCTTAGAACT
*
36123788 TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCACGGATACATC
36123842 GTCGAGACCT
Statistics
Matches: 122, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
78 4 0.03
79 87 0.71
80 31 0.25
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGA
ATGCTCTTAGAACT
Found at i:36123964 original size:38 final size:38
Alignment explanation
Indices: 36123895--36123969 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
36123885 GAATTTTAAT
*
36123895 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
36123933 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
36123970 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:36126452 original size:22 final size:22
Alignment explanation
Indices: 36126424--36126545 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
36126414 TTCCACATCC
36126424 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
36126446 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
36126470 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
36126493 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
36126517 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36126540 ATCACA
1 ATCACA
36126546 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36126459 original size:47 final size:47
Alignment explanation
Indices: 36126396--36126896 Score: 740
Period size: 47 Copynumber: 10.6 Consensus size: 47
36126386 CCCTTCGGGA
* * *
36126396 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
36126443 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36126490 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
36126537 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
36126584 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
36126631 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
36126678 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36126727 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
36126774 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
36126823 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
36126870 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36126897 GTGACAGCCC
Statistics
Matches: 430, Mismatches: 18, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 337 0.78
49 91 0.21
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:36127281 original size:56 final size:56
Alignment explanation
Indices: 36127192--36127367 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
36127182 ACAAGGGATG
36127192 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
36127248 ATAGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
36127304 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
36127360 ATGGGCAA
1 ATGGGCAA
36127368 TAAACTAATA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:36128595 original size:39 final size:41
Alignment explanation
Indices: 36128494--36128677 Score: 195
Period size: 39 Copynumber: 4.6 Consensus size: 41
36128484 TCGAATGATG
* * *
36128494 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGA-T-ACTAATA
* *
36128534 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATACTAATA
*
36128574 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATACTAATA
* * *
36128613 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATACTAATA
* *
36128652 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
36128678 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 9 0.07
39 52 0.42
40 51 0.41
41 11 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:36128691 original size:40 final size:39
Alignment explanation
Indices: 36128495--36128677 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 39
36128485 CGAATGATGT
* * * *
36128495 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
36128535 CCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA-A
36128575 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36128613 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAA
*
36128653 CCGGGCTATGACCCGAAGGCATTTG
1 CCGGGCTAAG-CCCGAAGGCATTTG
36128678 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
38 8 0.07
39 52 0.43
40 55 0.45
41 7 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36131494 original size:85 final size:85
Alignment explanation
Indices: 36131365--36131542 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
36131355 TATTTTATTG
*
36131365 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36131430 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36131450 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
36131515 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
36131535 -CCATGCTC
1 CCCATGCTC
36131543 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 8 0.09
85 84 0.91
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:36140113 original size:29 final size:29
Alignment explanation
Indices: 36140077--36140182 Score: 101
Period size: 29 Copynumber: 3.7 Consensus size: 29
36140067 ATAATATGAT
36140077 TTAGGCCTAATGGGCCATATAAATGTGAA
1 TTAGGCCTAATGGGCCATATAAATGTGAA
* * *
36140106 TTGGGCCTAGTGGGCCATA-AGAATATGAA
1 TTAGGCCTAATGGGCCATATA-AATGTGAA
* * *
36140135 CTAGG-CTAGATGGGCCATATGAATGAG-A
1 TTAGGCCTA-ATGGGCCATATAAATGTGAA
* *
36140163 TTAAGCCTAGTGGGCCATAT
1 TTAGGCCTAATGGGCCATAT
36140183 GCATGTATGT
Statistics
Matches: 61, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
28 18 0.30
29 43 0.70
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.25
Consensus pattern (29 bp):
TTAGGCCTAATGGGCCATATAAATGTGAA
Found at i:36142593 original size:39 final size:39
Alignment explanation
Indices: 36142531--36142655 Score: 126
Period size: 39 Copynumber: 3.2 Consensus size: 39
36142521 TTGGATGCTA
* * ** * * *
36142531 AGTAATTTAGTCATTTAGTAACTATCAAATATTCAGTGC
1 AGTAATTTAGTTATTCAAAAACTATCAATTATTCAATAC
* * *
36142570 AGTAGTTTAGTTATTCAAAAACTATTAATTACTCAATAC
1 AGTAATTTAGTTATTCAAAAACTATCAATTATTCAATAC
**
36142609 AGTAATTTAGTTATTCAGTAACTATCAATTATTCAATA-
1 AGTAATTTAGTTATTCAAAAACTATCAATTATTCAATAC
*
36142647 AGTAGTTTA
1 AGTAATTTA
36142656 CCCCTATTAA
Statistics
Matches: 70, Mismatches: 16, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
38 8 0.11
39 62 0.89
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.40
Consensus pattern (39 bp):
AGTAATTTAGTTATTCAAAAACTATCAATTATTCAATAC
Found at i:36142846 original size:44 final size:44
Alignment explanation
Indices: 36142798--36142887 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
36142788 CCAAAGTAAC
*
36142798 AGTAATAGTACGACACACAAGGTGCATCATCAACTCAAAGTCGA
1 AGTAACAGTACGACACACAAGGTGCATCATCAACTCAAAGTCGA
** * * * *
36142842 AGTAACAGTACGACACTTATGGTGCCTCATCGACTCAAGGTCGA
1 AGTAACAGTACGACACACAAGGTGCATCATCAACTCAAAGTCGA
36142886 AG
1 AG
36142888 AATTCCTGAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (44 bp):
AGTAACAGTACGACACACAAGGTGCATCATCAACTCAAAGTCGA
Found at i:36144007 original size:30 final size:28
Alignment explanation
Indices: 36143952--36144013 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 28
36143942 ATTATTTAAT
36143952 TAATAAATATCTTTTACTTAATAATAAA
1 TAATAAATATCTTTTACTTAATAATAAA
*
36143980 TAATAAATATCTATTTACTTCAATAATAAG
1 TAATAAATATCT-TTTACTT-AATAATAAA
36144010 TAAT
1 TAAT
36144014 TTAATTCCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.39
29 7 0.23
30 12 0.39
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (28 bp):
TAATAAATATCTTTTACTTAATAATAAA
Found at i:36147595 original size:26 final size:27
Alignment explanation
Indices: 36147529--36147595 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
36147519 GACTGTGGAA
* *
36147529 TGGGCTTTTGAAAATTTTTCTCAAAAT
1 TGGGTTTTTGAAAGTTTTTCTCAAAAT
** *
36147556 TGGGTTTTCAAAAGTTTTTCT-AAACCT
1 TGGGTTTTTGAAAGTTTTTCTCAAA-AT
36147583 T-GGTTTTTGAAAG
1 TGGGTTTTTGAAAG
36147596 AGATGATTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 13 0.41
27 19 0.59
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (27 bp):
TGGGTTTTTGAAAGTTTTTCTCAAAAT
Found at i:36160746 original size:27 final size:26
Alignment explanation
Indices: 36160706--36160810 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 26
36160696 AGGAAGCGTC
*
36160706 CTGGTGGCTATGCCACAAGTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
*
36160733 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
36160760 CTGGTGGCTCTGCCACAATATCTGCAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
* *
36160787 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
36160811 GCAGCCTCGC
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
26 8 0.11
27 61 0.87
28 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:36162773 original size:21 final size:20
Alignment explanation
Indices: 36162733--36162781 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
36162723 TCATATTTAA
*
36162733 TCAGTAAC-AA-TTAGTTAT
1 TCAGTAACTAATTTAGTCAT
36162751 TCAGTACACTAATTTAGTCAT
1 TCAGTA-ACTAATTTAGTCAT
36162772 TCAGTAACTA
1 TCAGTAACTA
36162782 TCAAATATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 6 0.22
19 2 0.07
20 6 0.22
21 13 0.48
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (20 bp):
TCAGTAACTAATTTAGTCAT
Found at i:36162776 original size:39 final size:39
Alignment explanation
Indices: 36162733--36162878 Score: 184
Period size: 39 Copynumber: 3.7 Consensus size: 39
36162723 TCATATTTAA
* * * * *
36162733 TCAGTAACAATTAGTTATTCAGTACACTAATTTAGTCAT
1 TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
* * *
36162772 TCAGTAACTATCAAATATTCAGTGCAGTAGTTTAGTTAT
1 TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
* * **
36162811 TCAATAATTATCAATTATTCAAAACAGTAATTTAGTTAT
1 TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
36162850 TCAGTAACTATCAATTATTCAGTACAGTA
1 TCAGTAACTATCAATTATTCAGTACAGTA
36162879 GCTTACCCCT
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (39 bp):
TCAGTAACTATCAATTATTCAGTACAGTAATTTAGTTAT
Found at i:36164000 original size:11 final size:11
Alignment explanation
Indices: 36163984--36164014 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
36163974 TCCTTCTTTG
36163984 TTTTATTTTAT
1 TTTTATTTTAT
36163995 TTTTATTTTAT
1 TTTTATTTTAT
36164006 TCTTTATTT
1 T-TTTATTT
36164015 GTTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:36164240 original size:30 final size:28
Alignment explanation
Indices: 36164185--36164246 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 28
36164175 ATTATTTAAT
36164185 TAATAAATATCTTTAACTTAATAATAAA
1 TAATAAATATCTTTAACTTAATAATAAA
* * *
36164213 TAATAAATATTTGTTTACTTCAATAATAAG
1 TAATAAATATCT-TTAACTT-AATAATAAA
36164243 TAAT
1 TAAT
36164247 TTAAATCCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 11 0.38
29 6 0.21
30 12 0.41
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (28 bp):
TAATAAATATCTTTAACTTAATAATAAA
Found at i:36166793 original size:32 final size:32
Alignment explanation
Indices: 36166757--36166832 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
36166747 GTCTCAATTA
* *
36166757 GGCCTAGCCCATCTCAGAATCAATATCAGTTG
1 GGCCTAGCCCATATCAGAACCAATATCAGTTG
* *
36166789 GGCCTAGACCATATCAGAACCAGTATCAGTTG
1 GGCCTAGCCCATATCAGAACCAATATCAGTTG
36166821 GGCCTAGCCCAT
1 GGCCTAGCCCAT
36166833 TTCAATATCA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (32 bp):
GGCCTAGCCCATATCAGAACCAATATCAGTTG
Found at i:36166804 original size:26 final size:26
Alignment explanation
Indices: 36166775--36166842 Score: 64
Period size: 32 Copynumber: 2.4 Consensus size: 26
36166765 CCATCTCAGA
36166775 ATCAATATCAGTTGGGCCTAGACCAT
1 ATCAATATCAGTTGGGCCTAGACCAT
*
36166801 ATCAGAACCAGTATCAGTTGGGCCTAGCCCAT
1 ATC---A--A-TATCAGTTGGGCCTAGACCAT
*
36166833 TTCAATATCA
1 ATCAATATCA
36166843 AACCAATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
26 8 0.24
27 1 0.03
29 2 0.06
31 1 0.03
32 22 0.65
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (26 bp):
ATCAATATCAGTTGGGCCTAGACCAT
Found at i:36169330 original size:32 final size:33
Alignment explanation
Indices: 36169294--36169360 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 33
36169284 CGACTTTACT
36169294 AACATCCCATAGACATTAAAATAATAATAA-AA
1 AACATCCCATAGACATTAAAATAATAATAATAA
36169326 AACATCCCATAGACATTAAAATAATAATAATAA
1 AACATCCCATAGACATTAAAATAATAATAATAA
36169359 AA
1 AA
36169361 TTTTACTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 30 0.88
33 4 0.12
ACGTcount: A:0.60, C:0.15, G:0.03, T:0.22
Consensus pattern (33 bp):
AACATCCCATAGACATTAAAATAATAATAATAA
Found at i:36170516 original size:14 final size:14
Alignment explanation
Indices: 36170499--36170535 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
36170489 TTTTTCTAAA
36170499 TGAATTTTTGGTTT
1 TGAATTTTTGGTTT
36170513 TGAATTTTTGGTTT
1 TGAATTTTTGGTTT
36170527 TGAATTTTT
1 TGAATTTTT
36170536 AGACTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.19, T:0.65
Consensus pattern (14 bp):
TGAATTTTTGGTTT
Found at i:36176619 original size:22 final size:22
Alignment explanation
Indices: 36176577--36176620 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
36176567 ATAGAGATTT
*
36176577 GATCAAATTAGTTTCTCTATTG
1 GATCAAATTAGTTTCTATATTG
* *
36176599 GATCAATTTAGTTTTTATATTG
1 GATCAAATTAGTTTCTATATTG
36176621 TTAAAAAGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.27, C:0.09, G:0.14, T:0.50
Consensus pattern (22 bp):
GATCAAATTAGTTTCTATATTG
Found at i:36177209 original size:15 final size:15
Alignment explanation
Indices: 36177189--36177221 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
36177179 TGTATGTAAA
36177189 TTGGCTTGTCCACAC
1 TTGGCTTGTCCACAC
36177204 TTGGCTTGTCCACAC
1 TTGGCTTGTCCACAC
36177219 TTG
1 TTG
36177222 ATCACCTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.30, G:0.21, T:0.36
Consensus pattern (15 bp):
TTGGCTTGTCCACAC
Found at i:36183757 original size:219 final size:211
Alignment explanation
Indices: 36183367--36183757 Score: 588
Period size: 219 Copynumber: 1.8 Consensus size: 211
36183357 TGAAGCATAA
* *
36183367 GAAGAAAGTTAAACTATTCTATAATGGTTTTTGAACTGATGTGTTATTGTTATTAGTTTGGTTTG
1 GAAGAAACTTAAACTATTCTATAATGGTTTTTGAACTGATGTGTTATTGTTATTAGTTTAGTTTG
* * *
36183432 GTTTGTTATTGTTGTTGGTTAATTGAGTTTATGTTGTGTTCTTTTTTTTTTGGACTGGTGTAGGT
66 GTATGTTATTGTTGTTGGTTAATTGACTTTATGTTGTGTTCTTTTTTTTTTAGACTGGTGTAGGT
* *
36183497 TTCTATTGTATTTTAGACTTTTGCTTATATTTTTTTTATTATAATGTTGTTGTATTGTTTTTGTT
131 TTCTATTGTATTTTAGACTTTTGCTCATATTTTTATTATTATAATGTTGTTGTATTGTTTTTGTT
36183562 GTTTATTTGGACTCAT
196 GTTTATTTGGACTCAT
36183578 GAAGAAACTTAAACTATTCTATAATGGTTTTTGAACTGATGTGTTATTATTATAATGTTATTAGT
1 GAAGAAACTTAAACTATTCTATAATGGTTTTTGAACTGATGTG------TTAT--TGTTATTAGT
*
36183643 TTAGTTTTGTATGTTATTGTTGTTGGTTAATTGAACTTT-TGTTGTGTTC-TTTTTTTTTAGACT
58 TTAGTTTGGTATGTTATTGTTGTTGGTTAATTG-ACTTTATGTTGTGTTCTTTTTTTTTTAGACT
* *
36183706 GGTGTAGGTTTCTATTGTATTTTGGACTTTTGCTCATGTTTATTATTATTAT
122 GGTGTAGGTTTCTATTGTATTTTAGACTTTTGCTCATATTT-TTATTATTAT
36183758 TATTATAATG
Statistics
Matches: 160, Mismatches: 10, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
211 42 0.26
217 4 0.03
218 51 0.32
219 59 0.37
220 4 0.03
ACGTcount: A:0.20, C:0.05, G:0.19, T:0.55
Consensus pattern (211 bp):
GAAGAAACTTAAACTATTCTATAATGGTTTTTGAACTGATGTGTTATTGTTATTAGTTTAGTTTG
GTATGTTATTGTTGTTGGTTAATTGACTTTATGTTGTGTTCTTTTTTTTTTAGACTGGTGTAGGT
TTCTATTGTATTTTAGACTTTTGCTCATATTTTTATTATTATAATGTTGTTGTATTGTTTTTGTT
GTTTATTTGGACTCAT
Found at i:36183842 original size:22 final size:23
Alignment explanation
Indices: 36183817--36183865 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 23
36183807 TACTTATGTT
36183817 TTTTTATT-A-TAATATTGTTGTA
1 TTTTTATTGACTAATATTGTT-TA
*
36183839 TTTTTTTTGGACTAATATTGTTTA
1 TTTTTATT-GACTAATATTGTTTA
36183863 TTT
1 TTT
36183866 GGGTTGATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 7 0.30
24 6 0.26
25 10 0.43
ACGTcount: A:0.22, C:0.02, G:0.10, T:0.65
Consensus pattern (23 bp):
TTTTTATTGACTAATATTGTTTA
Found at i:36184724 original size:22 final size:22
Alignment explanation
Indices: 36184699--36184742 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
36184689 AATTGGACTA
*
36184699 TTGGCACACAAAGAATTCGGCT
1 TTGGAACACAAAGAATTCGGCT
***
36184721 TTGGAACGGGAAGAATTCGGCT
1 TTGGAACACAAAGAATTCGGCT
36184743 GTGTAAATCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.23
Consensus pattern (22 bp):
TTGGAACACAAAGAATTCGGCT
Found at i:36186108 original size:27 final size:26
Alignment explanation
Indices: 36186078--36186134 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 26
36186068 CATACCTCGA
*
36186078 CCCCAAATTTGGTAATA-GACTATTATG
1 CCCC-AATTAGGTAA-AGGACTATTATG
*
36186105 CCCCTATTAGGTAAAGTGACTATTATG
1 CCCCAATTAGGTAAAG-GACTATTATG
36186132 CCC
1 CCC
36186135 TTATGGGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 1 0.04
26 8 0.31
27 17 0.65
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (26 bp):
CCCCAATTAGGTAAAGGACTATTATG
Found at i:36194771 original size:16 final size:16
Alignment explanation
Indices: 36194741--36194773 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36194731 TAGGTCTCCA
*
36194741 AAATTTTTACCTTTTT
1 AAATTTTTAACTTTTT
36194757 AAATTTTTAA-TTTTT
1 AAATTTTTAACTTTTT
36194772 AA
1 AA
36194774 CTTTCTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
AAATTTTTAACTTTTT
Found at i:36194830 original size:15 final size:16
Alignment explanation
Indices: 36194804--36194833 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
36194794 AGAATTTTTT
36194804 TATAATATTTTAAAAA
1 TATAATATTTTAAAAA
36194820 TATAA-ATTTTAAAA
1 TATAATATTTTAAAA
36194834 TTTTTATAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TATAATATTTTAAAAA
Found at i:36194850 original size:20 final size:20
Alignment explanation
Indices: 36194825--36194888 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
36194815 AAAAATATAA
* *
36194825 ATTTTAAAATTTTTATAAGT
1 ATTTTAAAATTTTTAAAATT
36194845 ATTTTAAAA-TTTTAAAATT
1 ATTTTAAAATTTTTAAAATT
*
36194864 ATTTTGAAATTTTTAAAATT
1 ATTTTAAAATTTTTAAAATT
36194884 ATTTT
1 ATTTT
36194889 GAATTATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 16 0.40
20 24 0.60
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
ATTTTAAAATTTTTAAAATT
Found at i:36194877 original size:28 final size:28
Alignment explanation
Indices: 36194823--36194883 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
36194813 TTAAAAATAT
*
36194823 AAATTTTAAAATTTTTATAAGTATTTTA
1 AAATTTTAAAATTTTTATAAATATTTTA
36194851 AAATTTTAAAATTATTT-TGAAAT-TTTTA
1 AAATTTTAAAATT-TTTAT-AAATATTTTA
36194879 AAATT
1 AAATT
36194884 ATTTTGAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 24 0.80
29 6 0.20
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (28 bp):
AAATTTTAAAATTTTTATAAATATTTTA
Found at i:36194893 original size:19 final size:19
Alignment explanation
Indices: 36194832--36194893 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
36194822 TAAATTTTAA
* * *
36194832 AATTTTTATAAGTATTTTA
1 AATTTTTAAAATTATTTTG
*
36194851 AAATTTTAAAATTATTTTG
1 AATTTTTAAAATTATTTTG
36194870 AAATTTTTAAAATTATTTTG
1 -AATTTTTAAAATTATTTTG
36194890 AATT
1 AATT
36194894 ATTTTGTAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 19 0.51
20 18 0.49
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
AATTTTTAAAATTATTTTG
Found at i:36196728 original size:40 final size:39
Alignment explanation
Indices: 36196644--36196828 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
36196634 TCGAATGATG
* * * *
36196644 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36196684 TCCGGACAAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36196724 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36196763 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
36196804 -CCGGGCTATGTCCCGAAGGGATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
36196829 AATGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36196850 original size:79 final size:79
Alignment explanation
Indices: 36196697--36196861 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
36196687 GGACAAAGAT
* * **
36196697 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
36196762 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
36196776 CCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTATGTCCCGAAGGGATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCAAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
36196839 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36196855 CCGAAGG
1 CCGAAGG
36196862 TACGTGATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.67
80 22 0.31
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36204902 original size:40 final size:39
Alignment explanation
Indices: 36204700--36204922 Score: 267
Period size: 40 Copynumber: 5.7 Consensus size: 39
36204690 TCGAATGATG
* * *
36204700 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
36204740 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
36204779 TTCCGGGCTAAG-CCCGAA-GCATTGGTGCGAGTTACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
36204817 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
36204857 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
36204897 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36204923 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
38 37 0.23
39 35 0.21
40 84 0.51
41 8 0.05
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:36225732 original size:46 final size:46
Alignment explanation
Indices: 36225682--36225854 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
36225672 TGGTTGAGCA
36225682 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
36225728 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
36225773 CATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
36225821 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
36225855 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36225838 original size:93 final size:93
Alignment explanation
Indices: 36225679--36225849 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
36225669 GGATGGTTGA
*
36225679 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
36225744 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
36225772 GCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
36225837 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36225850 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Done.