Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 115 of 349
Found at i:36231299 original size:26 final size:23
Alignment explanation
Indices: 36231238--36231293 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
36231228 CGCAGTGTAA
36231238 CTACTAATAGTAACGCAACAAAG
1 CTACTAATAGTAACGCAACAAAG
*
36231261 CTACTAATAGTAACGCAGCAAAG
1 CTACTAATAGTAACGCAACAAAG
*
36231284 CTGCTAATAG
1 CTACTAATAG
36231294 CGGTAAATGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (23 bp):
CTACTAATAGTAACGCAACAAAG
Found at i:36237616 original size:23 final size:23
Alignment explanation
Indices: 36237590--36237647 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
36237580 ATCGTAGCGT
*
36237590 AGCTGCTAATAGTAACGCAATAA
1 AGCTGCTAATAGTAACGCAACAA
* * *
36237613 AGCTGCTAGTAGTAACGTAGCAA
1 AGCTGCTAATAGTAACGCAACAA
36237636 AGCTGCTAATAG
1 AGCTGCTAATAG
36237648 CGGTAAACGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.22
Consensus pattern (23 bp):
AGCTGCTAATAGTAACGCAACAA
Found at i:36239377 original size:13 final size:13
Alignment explanation
Indices: 36239359--36239385 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36239349 GTACAAAAGA
36239359 AAGCTTCAACATT
1 AAGCTTCAACATT
36239372 AAGCTTCAACATT
1 AAGCTTCAACATT
36239385 A
1 A
36239386 GAACTAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (13 bp):
AAGCTTCAACATT
Found at i:36247787 original size:13 final size:13
Alignment explanation
Indices: 36247769--36247793 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36247759 ATGATAAGCA
36247769 AAAATCCCAAATT
1 AAAATCCCAAATT
36247782 AAAATCCCAAAT
1 AAAATCCCAAAT
36247794 AAAGAAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAATCCCAAATT
Found at i:36248147 original size:26 final size:26
Alignment explanation
Indices: 36248106--36248175 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
36248096 TTGCAGCAAG
* * *
36248106 GCTACCAGTAACAGTATAGCAACAGA
1 GCTACCAATATCAGTATAGCAACAAA
** * *
36248132 GCTTTCAATATCAGTATCGCAGCAAA
1 GCTACCAATATCAGTATAGCAACAAA
*
36248158 GCTACCAGTATCAGTATA
1 GCTACCAATATCAGTATA
36248176 TGTGGCGAAG
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (26 bp):
GCTACCAATATCAGTATAGCAACAAA
Found at i:36251151 original size:18 final size:18
Alignment explanation
Indices: 36251113--36251151 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
36251103 TTTGGACTAA
*
36251113 GTTTTGGGTTTCAGTTTT
1 GTTTTGGGTTTCAGTTAT
36251131 GTTTTGGGTTT-ATGTTAT
1 GTTTTGGGTTTCA-GTTAT
36251149 GTT
1 GTT
36251152 CATCGGCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.08, C:0.03, G:0.28, T:0.62
Consensus pattern (18 bp):
GTTTTGGGTTTCAGTTAT
Found at i:36252733 original size:39 final size:39
Alignment explanation
Indices: 36252628--36252724 Score: 151
Period size: 39 Copynumber: 2.5 Consensus size: 39
36252618 CCGGACATAT
* * *
36252628 TTCCAGCACGTAGCCTGCGGACCTTAAGTCTGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
36252667 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
*
36252706 TT-CAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
36252725 GTCTTTAAGC
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
38 16 0.30
39 38 0.70
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
Found at i:36254939 original size:30 final size:28
Alignment explanation
Indices: 36254903--36254964 Score: 72
Period size: 27 Copynumber: 2.1 Consensus size: 28
36254893 GGCTAACCAT
36254903 TTTTCTTTACTTTCCATATTTTTAGATTA-G
1 TTTTCTTTAC-TT-CATA-TTTTAGATTAGG
* *
36254933 TTTTCTTTTCTTCTTATTTTAGATTAGG
1 TTTTCTTTACTTCATATTTTAGATTAGG
36254961 TTTT
1 TTTT
36254965 TCCTTTCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 10 0.34
28 8 0.28
29 2 0.07
30 9 0.31
ACGTcount: A:0.16, C:0.11, G:0.08, T:0.65
Consensus pattern (28 bp):
TTTTCTTTACTTCATATTTTAGATTAGG
Found at i:36257654 original size:20 final size:18
Alignment explanation
Indices: 36257604--36257655 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
36257594 CTACAAAATA
36257604 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
36257621 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
36257641 AATATTAAATTAATA
1 AATATTAAATTAATA
36257656 AATTATTATC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 11 0.37
18 1 0.03
19 3 0.10
20 15 0.50
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:36265032 original size:39 final size:39
Alignment explanation
Indices: 36264980--36265142 Score: 227
Period size: 39 Copynumber: 4.2 Consensus size: 39
36264970 TATGAGATTG
*
36264980 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
*
36265019 AAAATATCCGGACATGAGATCTGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* *
36265058 AAAATATCCGGACATGAGATCCGTAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* * * * * **
36265097 AATATATCCGGACTTAAGGTCCGCAAGCTACGTGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
36265136 AAAATAT
1 AAAATAT
36265143 TCGAGTTAAA
Statistics
Matches: 109, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
Found at i:36265164 original size:78 final size:78
Alignment explanation
Indices: 36264980--36265180 Score: 199
Period size: 78 Copynumber: 2.6 Consensus size: 78
36264970 TATGAGATTG
* ** * * * * *
36264980 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCTGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAATATATCCGGACATAAGATCCGCAA
*
36265045 GCTATATGCTGGA
66 GCTACATGCTGGA
* * * * *
36265058 AAAATATCCGGACATGAGATCCGTAGGCTATATGCTAGAAATATATCCGGACTTAAGGTCCGCAA
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAATATATCCGGACATAAGATCCGCAA
*
36265123 GCTACGTGCTGGA
66 GCTACATGCTGGA
* ** * *
36265136 AAAATATTC-GAGTTAAAGACCCGCAGGCT-TACGCTAGTAATATAT
1 AAAATATCCGGACAT-AAGACCCGCAGGCTATATGCTAGAAATATAT
36265181 TTCGAGCTCT
Statistics
Matches: 103, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
77 17 0.17
78 86 0.83
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.23
Consensus pattern (78 bp):
AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAATATATCCGGACATAAGATCCGCAA
GCTACATGCTGGA
Found at i:36269373 original size:27 final size:26
Alignment explanation
Indices: 36269325--36269384 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
36269315 GCGAGACTGC
*
36269325 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
36269352 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
36269378 CAGATAT
1 CAGATAT
36269385 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36269427 original size:71 final size:67
Alignment explanation
Indices: 36269352--36269491 Score: 181
Period size: 67 Copynumber: 2.0 Consensus size: 67
36269342 TCACCAGATA
* * * *
36269352 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGTAGCGA
1 CAGATATTGTGACAAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
36269417 GGCTGC
62 GGCTGC
* * *
36269423 CAGATATTGTGACAAAGTCACCAGAACAGATATATGTGGCGAGGCCACTAGATTGCAGCGAGGCT
1 CAGATATTGTGACAAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
36269488 GC
66 GC
36269490 CA
1 CA
36269492 AAACGCTTCC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
67 37 0.60
71 25 0.40
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACAAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:36274857 original size:19 final size:20
Alignment explanation
Indices: 36274833--36274870 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
36274823 GGTACCACCA
36274833 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
36274852 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
36274871 ACCACATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:36284824 original size:46 final size:46
Alignment explanation
Indices: 36284774--36284881 Score: 128
Period size: 46 Copynumber: 2.3 Consensus size: 46
36284764 TCGAATTCGT
* * **
36284774 AACATATGTAGGAGCTCGAAACCTAAAT-CTGTATTCTCGCGTCTGC
1 AACATATGTAGGAGCTCGAAACCT-AATCCTGTATTCTCGAGCCCAC
* * *
36284820 AACATATATGGGAGCTCGAAACCTATTCCTGTATTCTCGAGCCCAC
1 AACATATGTAGGAGCTCGAAACCTAATCCTGTATTCTCGAGCCCAC
*
36284866 AACATACGTAGGAGCT
1 AACATATGTAGGAGCT
36284882 TAGAACTTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 2 0.04
46 49 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (46 bp):
AACATATGTAGGAGCTCGAAACCTAATCCTGTATTCTCGAGCCCAC
Found at i:36288258 original size:40 final size:40
Alignment explanation
Indices: 36288168--36288320 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
36288158 TAGATATATG
* * * * *
36288168 AAATGGTTAGATGAATCGATTATATGGAACA-AGATTTACA
1 AAATGATTATATGAATCAATTATATGGAA-ATAGATATGCA
* *
36288208 AAATGATTATATGAGTAAATTATATGGAAATAGATATGCA
1 AAATGATTATATGAATCAATTATATGGAAATAGATATGCA
* * * * * *
36288248 GAATGGTTATATTAATCAGTTGTATGGAAATAGAGATGCA
1 AAATGATTATATGAATCAATTATATGGAAATAGATATGCA
* * * *
36288288 TAATAATTATATGAATCAGTTATACGGAAATAG
1 AAATGATTATATGAATCAATTATATGGAAATAG
36288321 TTATATGAAA
Statistics
Matches: 91, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 90 0.99
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (40 bp):
AAATGATTATATGAATCAATTATATGGAAATAGATATGCA
Found at i:36308065 original size:43 final size:43
Alignment explanation
Indices: 36308014--36308180 Score: 185
Period size: 43 Copynumber: 3.9 Consensus size: 43
36308004 GTTATCGAGA
*
36308014 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTATAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTATAT
* * *
36308057 TGCGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTATAT
* * * * * *
36308100 TATGATTTCATGTAAGACCCTGTCTAGGACAGTGGCATCGATA-
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT-TATAT
* * * *
36308143 TGTGATAACATGTAAGGCCATATCTGGGATA-TGGCATT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATT
36308181 GTACGAGCTT
Statistics
Matches: 102, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 6 0.06
43 93 0.91
44 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTATAT
Found at i:36308710 original size:20 final size:17
Alignment explanation
Indices: 36308685--36308732 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 17
36308675 TGGCTTGAAT
36308685 TATGTGTTTGATAAGTAGTA
1 TATGTGTTT-ATAAGT--TA
36308705 TATGTGATTTATAAGTTA
1 TATGTG-TTTATAAGTTA
36308723 TCATGTGTTT
1 T-ATGTGTTT
36308733 TGGCATGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 6 0.23
19 5 0.19
20 12 0.46
21 3 0.12
ACGTcount: A:0.27, C:0.02, G:0.21, T:0.50
Consensus pattern (17 bp):
TATGTGTTTATAAGTTA
Found at i:36312580 original size:47 final size:44
Alignment explanation
Indices: 36312425--36312682 Score: 196
Period size: 47 Copynumber: 5.5 Consensus size: 44
36312415 CTGATGCCAC
* * * *
36312425 GTCCCAGACATGGTCTTACACTGGCTCTCATATATGCATGCTGATGCAT
1 GTCCCAGACAT-GTCTTACACTGG--CT-ATCTCTGTA-GCCGATGCAT
* * * * *
36312474 GTCCCAGACATGTCTTACACTAGCACAACTCT-TAGTCGATGCGT
1 GTCCCAGACATGTCTTACACTGGC-TATCTCTGTAGCCGATGCAT
*
36312518 GTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTGGCTATCTCTGT--A-GCCGATGCAT
* *
36312565 GTCCCAAACATGTCTTACTCTGGCACTCATCTCTGT-GCCGATGCCAT
1 GTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTAGCCGATG-CAT
* * * *
36312612 GTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCAT
1 GTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTAGCCGATGCAT
* *
36312659 GTCCCATACATGTGTTACACTGGC
1 GTCCCAGACATGTCTTACACTGGC
36312683 ACACAAATTA
Statistics
Matches: 171, Mismatches: 25, Indels: 29
0.76 0.11 0.13
Matches are distributed among these distances:
43 5 0.03
44 30 0.18
45 3 0.02
46 27 0.16
47 57 0.33
48 28 0.16
49 13 0.08
50 8 0.05
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (44 bp):
GTCCCAGACATGTCTTACACTGGCTATCTCTGTAGCCGATGCAT
Found at i:36312661 original size:94 final size:93
Alignment explanation
Indices: 36312417--36312684 Score: 289
Period size: 94 Copynumber: 2.9 Consensus size: 93
36312407 ATAAATTGCT
* * *
36312417 GATGCCACGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCAT-GCTGATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATG--TGGCCGATGCATGTCCCAA
* *
36312481 ACATGTCTTACACTAGCA-CAACTCTTAGTC
63 ACATGTCTTACACTGGCACCAACTCTTAGCC
* * * *
36312511 GATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATCTC-T-GTCGAGGCCGATGCATGTCCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAAT-GTGGCCGATGCATGTCCCAA
* *
36312572 ACATGTCTTACTCTGGCACTCATCTCTGT-GCC
63 ACATGTCTTACACTGGCAC-CAACTCT-TAGCC
* *
36312604 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCATACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACA
*
36312669 TGTGTTACACTGGCAC
66 TGTCTTACACTGGCAC
36312685 ACAAATTACC
Statistics
Matches: 144, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
91 32 0.22
92 14 0.10
93 28 0.19
94 56 0.39
95 14 0.10
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACA
TGTCTTACACTGGCACCAACTCTTAGCC
Found at i:36313047 original size:17 final size:17
Alignment explanation
Indices: 36313025--36313058 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
36313015 TTCACTATGA
36313025 ATTTTACCCCTATGCCC
1 ATTTTACCCCTATGCCC
36313042 ATTTTACCCCTATGCCC
1 ATTTTACCCCTATGCCC
36313059 GAAAATTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (17 bp):
ATTTTACCCCTATGCCC
Found at i:36313390 original size:12 final size:12
Alignment explanation
Indices: 36313373--36313397 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36313363 TAAAAATGTA
36313373 AAAATCATCAAG
1 AAAATCATCAAG
36313385 AAAATCATCAAG
1 AAAATCATCAAG
36313397 A
1 A
36313398 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:36317673 original size:31 final size:31
Alignment explanation
Indices: 36317638--36317701 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
36317628 GAAGTGTCAG
36317638 AATGTTGAGTTACTCCAGGTTGAATCTGAGA
1 AATGTTGAGTTACTCCAGGTTGAATCTGAGA
*
36317669 AATGTTGAGTTACTCCGGGTTGAATCTGAGA
1 AATGTTGAGTTACTCCAGGTTGAATCTGAGA
36317700 AA
1 AA
36317702 CTGGATGGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (31 bp):
AATGTTGAGTTACTCCAGGTTGAATCTGAGA
Found at i:36321882 original size:45 final size:45
Alignment explanation
Indices: 36321832--36321919 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
36321822 TCAAAACATG
*
36321832 TGTCACATACATCATGAACTTAGACCACAACTCAATGAGTTCATA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCATA
* *
36321877 TGTCACATATATCATGAACTCAGACCACAATTCAATGAGTTCA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCA
36321920 AATCACATAG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCATA
Found at i:36322444 original size:16 final size:16
Alignment explanation
Indices: 36322423--36322453 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36322413 CTTAATTTCT
36322423 TAATTATTATATTATA
1 TAATTATTATATTATA
*
36322439 TAATTATTATTTTAT
1 TAATTATTATATTAT
36322454 TTTAAATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TAATTATTATATTATA
Found at i:36322803 original size:16 final size:17
Alignment explanation
Indices: 36322765--36322804 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
36322755 AGTGTATTAT
36322765 TATT-ATTATTAATTTA
1 TATTAATTATTAATTTA
*
36322781 T-TAAATTA-TAATTTA
1 TATTAATTATTAATTTA
36322796 TATTAATTA
1 TATTAATTA
36322805 CATTATGAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTAATTATTAATTTA
Found at i:36323665 original size:17 final size:18
Alignment explanation
Indices: 36323643--36323678 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
36323633 TAAATGAGTT
36323643 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
36323660 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
36323678 A
1 A
36323679 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:36324163 original size:23 final size:26
Alignment explanation
Indices: 36324135--36324189 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
36324125 TGAAAATTTG
*
36324135 ATTGAAAA-GTG-GAAA-ATGATTGA
1 ATTGAAAATGTGAGAAATATGACTGA
36324158 ATTGAAAATGTGAGAAATTATGACTGA
1 ATTGAAAATGTGAGAAA-TATGACTGA
36324185 ATTGA
1 ATTGA
36324190 GATTTCTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 8 0.30
24 3 0.11
25 4 0.15
27 12 0.44
ACGTcount: A:0.45, C:0.02, G:0.24, T:0.29
Consensus pattern (26 bp):
ATTGAAAATGTGAGAAATATGACTGA
Found at i:36327460 original size:15 final size:16
Alignment explanation
Indices: 36327442--36327479 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
36327432 AATTGAAAAG
36327442 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
* *
36327457 ATGATAATTTAATTAA
1 ATGAAAAGTTAATTAA
36327473 ATGAAAA
1 ATGAAAA
36327480 AGAAAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:36331466 original size:48 final size:47
Alignment explanation
Indices: 36331356--36331566 Score: 212
Period size: 46 Copynumber: 4.5 Consensus size: 47
36331346 TGATATGTGT
* * * *
36331356 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCAC-AG-TATGAC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAAGAC
* **
36331401 AGCTTGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATTTAC
1 -GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA-AGAC
* * * * *
36331450 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGACAAGA-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAAGAC
* * * *
36331496 GTTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA-AGAC
* *
36331544 GCTAGTGTAAAACCTGTCTGGGA
1 GCTAGTGTAAGACATGTCTGGGA
36331567 TATGGCGTCA
Statistics
Matches: 136, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
46 69 0.51
47 5 0.04
48 59 0.43
49 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAAGAC
Found at i:36336774 original size:21 final size:19
Alignment explanation
Indices: 36336737--36336775 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
36336727 GCAACTGGTT
*
36336737 TCTTTTTCTTGTTTTCTAG
1 TCTTTTTCTTGTCTTCTAG
36336756 TCTTTTTCTTTTGTCTTCTA
1 TCTTTTTC--TTGTCTTCTA
36336776 TGAGGCCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.05, C:0.18, G:0.08, T:0.69
Consensus pattern (19 bp):
TCTTTTTCTTGTCTTCTAG
Found at i:36345160 original size:48 final size:49
Alignment explanation
Indices: 36345048--36345224 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 49
36345038 TAATAGGTGT
* * * * * *
36345048 GCTAGTGTAAGACATGTCTGGGACAT-GTATCAGCCAC-AG-TATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGCGATATGAAA
*
36345094 GCCAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGCGATAT-ACAA
1 GCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGCGATATGA-AA
* *
36345142 GCTAGTGTAAGATC-TGTCTAGGACATGGCATCGGCCTCGCTATGTGAAA
1 GCTAGTGTAAGA-CATGTCTAGGACATGGCATCGGCCTCGCGATATGAAA
* *
36345191 GCTAGTGTAAGACCATGTCTGGGATATGGCATCG
1 GCTAGTGTAAGA-CATGTCTAGGACATGGCATCG
36345225 ACATCTTAAC
Statistics
Matches: 111, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
46 32 0.29
47 2 0.02
48 27 0.24
49 32 0.29
50 18 0.16
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
GCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGCGATATGAAA
Found at i:36345193 original size:49 final size:49
Alignment explanation
Indices: 36345097--36345224 Score: 172
Period size: 49 Copynumber: 2.6 Consensus size: 49
36345087 TATGAGAGCC
36345097 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGCGATATACAAGCT
1 AGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGCGATATACAAGCT
* *
36345145 AGTGTAAGATC-TGTCTAGGACATGGCATCGGCCTCGCTATGTGA-AAGCT
1 AGTGTAAGA-CATGTCTAGGACATGGCATCGGCCTCGCGATAT-ACAAGCT
* *
36345194 AGTGTAAGACCATGTCTGGGATATGGCATCG
1 AGTGTAAGA-CATGTCTAGGACATGGCATCG
36345225 ACATCTTAAC
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
48 21 0.30
49 32 0.45
50 18 0.25
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGCGATATACAAGCT
Found at i:36346321 original size:13 final size:13
Alignment explanation
Indices: 36346305--36346329 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36346295 TGGCTGTGTG
36346305 ATGGACACGGGCC
1 ATGGACACGGGCC
36346318 ATGGACACGGGC
1 ATGGACACGGGC
36346330 GTGTGTCAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.40, T:0.08
Consensus pattern (13 bp):
ATGGACACGGGCC
Found at i:36352289 original size:27 final size:27
Alignment explanation
Indices: 36352066--36352278 Score: 284
Period size: 27 Copynumber: 7.9 Consensus size: 27
36352056 TGGATAAGTT
*
36352066 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
36352093 GTAGAATTACCGAAATACCATTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
36352120 GTAGAATTTCCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
**
36352147 GTAGAATTATTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
36352174 GTAAAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
36352201 ATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
36352228 GTGGAAATACCGAAATA-CCTCTGTAGG
1 GTAGAATTACCGAAATACCCT-TGTAGG
*
36352255 GTAGAATTACCGAGATACCCTTGT
1 GTAGAATTACCGAAATACCCTTGT
36352279 GGGGGTAAAT
Statistics
Matches: 160, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.02
27 154 0.96
28 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:36352992 original size:27 final size:26
Alignment explanation
Indices: 36352948--36352999 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36352938 CTCGCTGCAA
*
36352948 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
36352975 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
36353000 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:36355470 original size:48 final size:45
Alignment explanation
Indices: 36355324--36355489 Score: 179
Period size: 48 Copynumber: 3.5 Consensus size: 45
36355314 TAGGTGTGCT
** * * *
36355324 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCAG-ATAAAAGCC
*
36355370 AGTGTAAGACATGTTTGGGACATGCATTGGCCTCAAGATAATTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTC-AGATAA--AAGCC
* *
36355418 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGCGATACACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTC-AGATA-A-AAGCC
* *
36355466 AGTGTAAGACTTCTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
36355490 GCGTCAGCTT
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
46 33 0.32
47 2 0.02
48 67 0.65
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCCTCAGATAAAAGCC
Found at i:36355527 original size:44 final size:44
Alignment explanation
Indices: 36355465--36355579 Score: 185
Period size: 44 Copynumber: 2.6 Consensus size: 44
36355455 ATACACAAGC
*
36355465 TAGTGTAAGACTTCTCTGGGACATGGCGTCAGCTTGCAGTGTGT
1 TAGTGTAAGACTTGTCTGGGACATGGCGTCAGCTTGCAGTGTGT
* * *
36355509 TAGTGTAAGGCATGTCTGGGACATGGCGTCAGCTTGTAGTGTGT
1 TAGTGTAAGACTTGTCTGGGACATGGCGTCAGCTTGCAGTGTGT
*
36355553 CAGTGTAAGACTTGTCTGGGACATGGC
1 TAGTGTAAGACTTGTCTGGGACATGGC
36355580 ATCGGCCTTG
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.19, C:0.17, G:0.34, T:0.30
Consensus pattern (44 bp):
TAGTGTAAGACTTGTCTGGGACATGGCGTCAGCTTGCAGTGTGT
Found at i:36363248 original size:25 final size:25
Alignment explanation
Indices: 36363214--36363264 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
36363204 TTGTTATGAC
36363214 ATTGTGAACAATATCCATTTAATAT
1 ATTGTGAACAATATCCATTTAATAT
36363239 ATTGTGAACAATATCCATTTAATAT
1 ATTGTGAACAATATCCATTTAATAT
36363264 A
1 A
36363265 CCTTCTAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (25 bp):
ATTGTGAACAATATCCATTTAATAT
Found at i:36364932 original size:18 final size:19
Alignment explanation
Indices: 36364897--36364932 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
36364887 TAAAGGTTTG
*
36364897 ATTCTTAGGTTTTTATTTC
1 ATTCTTAGGTTTTCATTTC
36364916 ATTCTTA-GTTTTCATTT
1 ATTCTTAGGTTTTCATTT
36364933 AGGTTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.17, C:0.11, G:0.08, T:0.64
Consensus pattern (19 bp):
ATTCTTAGGTTTTCATTTC
Found at i:36368364 original size:32 final size:33
Alignment explanation
Indices: 36368285--36368361 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 33
36368275 GTTTTTTTTG
*
36368285 TTGTTTAGG-GTTTATTAATTAGGGTTTTAGGT
1 TTGTTTAGGATTTTATTAATTAGGGTTTTAGGT
* * *
36368317 TTTTTTTGGATTTTATT-ATTATGGTTTTAGG-
1 TTGTTTAGGATTTTATTAATTAGGGTTTTAGGT
*
36368348 TTGTTTAGGTTTTT
1 TTGTTTAGGATTTT
36368362 TATGATTTTA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
31 11 0.30
32 20 0.54
33 6 0.16
ACGTcount: A:0.16, C:0.00, G:0.23, T:0.61
Consensus pattern (33 bp):
TTGTTTAGGATTTTATTAATTAGGGTTTTAGGT
Found at i:36372768 original size:46 final size:46
Alignment explanation
Indices: 36372718--36372890 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
36372708 TGGTTGAGCA
*
36372718 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
36372764 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
** *
36372809 CATCCGAACTTTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
36372857 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTA
36372891 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36372874 original size:93 final size:93
Alignment explanation
Indices: 36372715--36372885 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
36372705 GGATGGTTGA
* *
36372715 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
36372780 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
** *
36372808 GCATCCGAACTTTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
36372873 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36372886 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:36378346 original size:18 final size:18
Alignment explanation
Indices: 36378307--36378356 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
36378297 TATGTTTATT
36378307 AATTAAAAATTAAAAAAAAA
1 AATTAAAAA-T-AAAAAAAA
*
36378327 AACTTAAAAATAAAATAAA
1 AA-TTAAAAATAAAAAAAA
*
36378346 AATTATAAATA
1 AATTAAAAATA
36378357 TGTTTGGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 8 0.30
19 9 0.33
20 3 0.11
21 7 0.26
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (18 bp):
AATTAAAAATAAAAAAAA
Found at i:36385456 original size:20 final size:20
Alignment explanation
Indices: 36385431--36385469 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36385421 TGTAACATAT
36385431 ATCATGAACTCAGACCACAA
1 ATCATGAACTCAGACCACAA
* *
36385451 ATCATGAGCTCAGATCACA
1 ATCATGAACTCAGACCACA
36385470 TAGTTCCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.28, G:0.13, T:0.18
Consensus pattern (20 bp):
ATCATGAACTCAGACCACAA
Found at i:36389543 original size:47 final size:48
Alignment explanation
Indices: 36389478--36389594 Score: 137
Period size: 48 Copynumber: 2.5 Consensus size: 48
36389468 CTTCGACTAA
* **
36389478 ATATATTGGCACTAAGTGTGCGTGA-CCAGATAACTTTGGCTATATAC
1 ATATATTGGCACTTAGTGTGCGTGATCCAGATAACTCCGGCTATATAC
** ** * *
36389525 ATATATTGGCACTTAGTGTATGTGATTGAGATAGCTCCGGCTATATAT
1 ATATATTGGCACTTAGTGTGCGTGATCCAGATAACTCCGGCTATATAC
*
36389573 ACATATTGGCACTTAGTGTGCG
1 ATATATTGGCACTTAGTGTGCG
36389595 AGATTGATAT
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
47 22 0.39
48 35 0.61
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.34
Consensus pattern (48 bp):
ATATATTGGCACTTAGTGTGCGTGATCCAGATAACTCCGGCTATATAC
Found at i:36389579 original size:48 final size:48
Alignment explanation
Indices: 36389515--36389616 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
36389505 AGATAACTTT
* * *
36389515 GGCTATATACATATATTGGCACTTAGTGTATGTGATTGAGATAGCTCC
1 GGCTATATACACATATTGGCACTTAGTGTACGAGATTGAGATAGCTCC
* * * *
36389563 GGCTATATATACATATTGGCACTTAGTGTGCGAGATTGATATAGCTTC
1 GGCTATATACACATATTGGCACTTAGTGTACGAGATTGAGATAGCTCC
36389611 GGCTAT
1 GGCTAT
36389617 TTATTTGACA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (48 bp):
GGCTATATACACATATTGGCACTTAGTGTACGAGATTGAGATAGCTCC
Found at i:36394486 original size:22 final size:22
Alignment explanation
Indices: 36394461--36394535 Score: 96
Period size: 22 Copynumber: 3.2 Consensus size: 22
36394451 TCATTTTACC
36394461 TTACAAGGGTATTACATTCATT
1 TTACAAGGGTATTACATTCATT
*
36394483 TTACAAGGGTATTACAGTCATTT
1 TTACAAGGGTATTACATTCA-TT
36394506 TACCCTACAAGGGTATTACATTCATT
1 T----TACAAGGGTATTACATTCATT
36394532 TTAC
1 TTAC
36394536 CTTATAGGGG
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
22 22 0.48
23 3 0.07
26 3 0.07
27 18 0.39
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (22 bp):
TTACAAGGGTATTACATTCATT
Found at i:36394505 original size:49 final size:49
Alignment explanation
Indices: 36394435--36394535 Score: 193
Period size: 49 Copynumber: 2.1 Consensus size: 49
36394425 GATTTTACCC
*
36394435 TACAAGGGTATTACAGTCATTTTACCTTACAAGGGTATTACATTCATTT
1 TACAAGGGTATTACAGTCATTTTACCCTACAAGGGTATTACATTCATTT
36394484 TACAAGGGTATTACAGTCATTTTACCCTACAAGGGTATTACATTCATTT
1 TACAAGGGTATTACAGTCATTTTACCCTACAAGGGTATTACATTCATTT
36394533 TAC
1 TAC
36394536 CTTATAGGGG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (49 bp):
TACAAGGGTATTACAGTCATTTTACCCTACAAGGGTATTACATTCATTT
Found at i:36394611 original size:27 final size:27
Alignment explanation
Indices: 36394314--36394613 Score: 245
Period size: 27 Copynumber: 11.3 Consensus size: 27
36394304 TAGGCAAATA
* * * *
36394314 AGTCATTTTACCTTACAGGGGTATTAC
1 AGTCATTTTACCCTATAAGGGTATTTC
* *
36394341 AGTCATTTTAGCTTATAAGGGTATTTC
1 AGTCATTTTACCCTATAAGGGTATTTC
**
36394368 AGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATAAGGGTATTTC
* **
36394395 -GATTATTTTACCCTATGGGGGTATTTC
1 AG-TCATTTTACCCTATAAGGGTATTTC
* * * *
36394422 GGTGATTTTACCCTACAAGGGTATTAC
1 AGTCATTTTACCCTATAAGGGTATTTC
* * *
36394449 AGTCATTTTACCTTACAAGGGTATTAC
1 AGTCATTTTACCCTATAAGGGTATTTC
* *
36394476 ATTCATTTTA--C---AAGGGTATTAC
1 AGTCATTTTACCCTATAAGGGTATTTC
* *
36394498 AGTCATTTTACCCTACAAGGGTATTAC
1 AGTCATTTTACCCTATAAGGGTATTTC
* * * *
36394525 ATTCATTTTACCTTATAGGGGTATTTT
1 AGTCATTTTACCCTATAAGGGTATTTC
* * *
36394552 GGTCATTTTACCCTAT-GGGGAATTTC
1 AGTCATTTTACCCTATAAGGGTATTTC
* *
36394578 GGTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTTTACCCTATAAGGGTATTTC
* *
36394605 GGCCATTTT
1 AGTCATTTT
36394614 TTTCGGCCCA
Statistics
Matches: 231, Mismatches: 34, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
22 20 0.09
24 1 0.00
26 25 0.11
27 184 0.80
28 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (27 bp):
AGTCATTTTACCCTATAAGGGTATTTC
Found at i:36400404 original size:23 final size:22
Alignment explanation
Indices: 36400353--36400404 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
36400343 CCTCGTCTTT
*
36400353 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
36400375 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
36400398 TTCTTTT
1 TTCTTTT
36400405 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:36402722 original size:6 final size:6
Alignment explanation
Indices: 36402711--36402735 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
36402701 TAATTAGAAC
36402711 ACTAAA ACTAAA ACTAAA ACTAAA A
1 ACTAAA ACTAAA ACTAAA ACTAAA A
36402736 AAAATTCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (6 bp):
ACTAAA
Found at i:36407699 original size:30 final size:30
Alignment explanation
Indices: 36407665--36407724 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
36407655 ATTTAATACG
36407665 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
36407695 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36407725 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36410180 original size:20 final size:20
Alignment explanation
Indices: 36410151--36410195 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
36410141 AGCACATGTA
* *
36410151 TTCATAAAATATTAGAATTT
1 TTCATAAAATATTACAACTT
* *
36410171 TTCATCAAATTTTACAACTT
1 TTCATAAAATATTACAACTT
36410191 TTCAT
1 TTCAT
36410196 TTTAGCCCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (20 bp):
TTCATAAAATATTACAACTT
Found at i:36412554 original size:25 final size:25
Alignment explanation
Indices: 36412526--36412620 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
36412516 CTCTTTTAAT
* * *
36412526 AACTGGGGCAAAGCCGTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
36412551 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
36412576 AACTGGGGTAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
36412601 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
36412621 AGCACTTCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:36413233 original size:27 final size:27
Alignment explanation
Indices: 36412826--36413229 Score: 558
Period size: 27 Copynumber: 15.0 Consensus size: 27
36412816 GGGCAAAATG
* * * * *
36412826 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36412853 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
36412880 GTACTTCTGCCCTACAAGGGTATTCCA
1 GTAATTCTACCCTACAGGGGTATTTCA
36412907 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
36412934 GTAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36412961 GTAATTCTACCCTACAGGGTTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36412988 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
36413015 GTAATTCTACCCTATAGGGTTTTTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36413042 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
36413069 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
36413096 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
36413123 GTAATTCTACCTTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
**
36413150 GTAATTCTACCCTACAGGATTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36413177 GTAATTCTACCCTACAGGGGTATTT-T
1 GTAATTCTACCCTACAGGGGTATTTCA
36413203 GATAATTCTACCCTACAGGGGTATTTC
1 G-TAATTCTACCCTACAGGGGTATTTC
36413230 GATATTTTAC
Statistics
Matches: 331, Mismatches: 44, Indels: 3
0.88 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 330 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:36413279 original size:27 final size:27
Alignment explanation
Indices: 36413191--36413362 Score: 145
Period size: 27 Copynumber: 6.4 Consensus size: 27
36413181 TTCTACCCTA
* * **
36413191 CAGGGGTATTTTGATAATTCTACCCTA-
1 CAGGGGTATTTCGATAATTTTA-CAAAC
*
36413218 CAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGGGTATTTCGATAATTTTACAAAC
* * *
36413244 C-GAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTTCGATAATTTTACAAAC
* * * *
36413271 TAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTCGATAATTTTACAAAC
* * *
36413298 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTCGATAATTTTACAAAC
*
36413325 CAGGGGTATTT-TAGTAATTTTACAAAC
1 CAGGGGTATTTCGA-TAATTTTACAAAC
36413352 CAGGGGTATTT
1 CAGGGGTATTT
36413363 TACTGATCGA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
25 3 0.02
26 17 0.14
27 100 0.83
28 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.37
Consensus pattern (27 bp):
CAGGGGTATTTCGATAATTTTACAAAC
Found at i:36413316 original size:54 final size:54
Alignment explanation
Indices: 36413233--36413363 Score: 163
Period size: 54 Copynumber: 2.4 Consensus size: 54
36413223 GTATTTCGAT
* * * * ** *
36413233 ATTTTACAAATCGAGAGTATTTCGATAATTTCACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGATAATTTCACAAACCAGGGGTATTTTAGTA
* * *
36413287 ATTTTACAAGCCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGATAATTTCACAAACCAGGGGTATTTTAGTA
*
36413341 ATTTTACAAACCAGGGGTATTTT
1 ATTTTACAAACCAAGGGTATTTT
36413364 ACTGATCGAG
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (54 bp):
ATTTTACAAACCAAGGGTATTTTGATAATTTCACAAACCAGGGGTATTTTAGTA
Found at i:36413363 original size:27 final size:27
Alignment explanation
Indices: 36413258--36413364 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
36413248 AGTATTTCGA
* ** *
36413258 TAATTTCACAAATTAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTAG
* * *
36413285 TAATTTTACAAGCCAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTAG
36413312 TAATTTTACAAACCAGGGGTATTTTAG
1 TAATTTTACAAACCAGGGGTATTTTAG
36413339 TAATTTTACAAACCAGGGGTATTTTA
1 TAATTTTACAAACCAGGGGTATTTTA
36413365 CTGATCGAGG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAACCAGGGGTATTTTAG
Found at i:36413364 original size:45 final size:45
Alignment explanation
Indices: 36413314--36413408 Score: 104
Period size: 45 Copynumber: 2.1 Consensus size: 45
36413304 TATTTTGGTA
36413314 ATTTTACAAACC-AGGGGTATTTTAGTAATTTTACAAACC-AGGGGT
1 ATTTTACAAACCGA-GGGTATTTTAGTAATTTTACAAACCGA-GGGT
** * * **
36413359 ATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGAGGGT
1 ATTTTACAAACCGAGGGTATTTTAGTAATTTTACAAACCGAGGGT
36413404 ATTTT
1 ATTTT
36413409 GGTAATTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
45 40 0.95
46 2 0.05
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (45 bp):
ATTTTACAAACCGAGGGTATTTTAGTAATTTTACAAACCGAGGGT
Found at i:36413389 original size:27 final size:27
Alignment explanation
Indices: 36413370--36413485 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
36413360 TTTTACTGAT
*
36413370 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CGAGGGTATTTTGGTAATTTTCTAAAC
*
36413397 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CGAGGGTATTTTGGTAATTTTCTAAAC
** * * *
36413424 TAAGGGTATTTTAGTAATTTTATAAAT
1 CGAGGGTATTTTGGTAATTTTCTAAAC
*** * *
36413451 CGAGGGTAAAATGGTAATTTTGTAAAT
1 CGAGGGTATTTTGGTAATTTTCTAAAC
36413478 CGAGGGTA
1 CGAGGGTA
36413486 AAACAATAAT
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.31, C:0.05, G:0.25, T:0.39
Consensus pattern (27 bp):
CGAGGGTATTTTGGTAATTTTCTAAAC
Found at i:36413404 original size:72 final size:72
Alignment explanation
Indices: 36413300--36413436 Score: 195
Period size: 72 Copynumber: 1.9 Consensus size: 72
36413290 TTACAAGCCA
*
36413300 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTA
1 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTA
36413365 CTGATCG
66 CTGATCG
** * ** *
36413372 AGGGTATTTTGGTAATTTTGTAAACC-GAGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTT
36413436 A
65 A
36413437 GTAATTTTAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
71 1 0.02
72 56 0.98
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.40
Consensus pattern (72 bp):
AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTA
CTGATCG
Found at i:36413431 original size:54 final size:54
Alignment explanation
Indices: 36413372--36413929 Score: 182
Period size: 54 Copynumber: 10.3 Consensus size: 54
36413362 TTACTGATCG
* * ***
36413372 AGGGTATTTTGGTAATTTTGTAAACCGAGGGTATTTTGGTAATTTTGTAAACTA
1 AGGGTATTTTAGTAATTTTATAAACCGAGGGTAAAATGGTAATTTTGTAAACTA
* *
36413426 AGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAA-TCG
1 AGGGTATTTTAGTAATTTTATAAACCGAGGGTAAAATGGTAATTTTGTAAACT-A
**** * * * * * * * * *
36413480 AGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACGATAATTCTGTAAA-TCG
1 AGGGTATTTTAGTAATTTTATAAACCGAGGGTAAAATGGTAATTTTGTAAACT-A
*** * * * * *
36413534 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAA-TCA
1 AGGGTATTTTAGTAATTTTATAAACCGAGGGTAAAATGGTAATTTTGTAAACT-A
***** * * * * *
36413588 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTCTATAAATTG
1 AGGGTATTTTAGTAATTTTATAAACCGAGGGTAAAATGGTAATTT-TGTAAACTA
*** * * * * * * * *
36413643 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGCAAA-TCG
1 AGGGTATTTTAGTAATTTTATAAACCGAGGGTAAAATGGTAATTTTGTAAACT-A
*** * * * * *
36413697 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAA-TCG
1 AGGGTATTTTAGTAATTTTATAAACCGAGGGTAAAATGGTAATTTTGTAAACT-A
** * * * * * *
36413751 AGGGTA--AAACGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAA-TCG
1 AGGGTATTTTA-G-TAATTTTATAAACCGAGGGTAAAATGGTAATTTTGTAAACT-A
* *** * * * * * *
36413805 AGAGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA-TCG
1 AGGGTATTTTAGTAATTTTATAAACCGAGGGTAAAATGGTAATTTTGTAAACT-A
***** * * * *
36413859 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAACTA
1 AGGGTATTTTAGTAATTTTATAAACCGAGGGTAAAATGGTAATTTTGTAAACTA
* *
36413913 A-GGTATTTCAATAATTT
1 AGGGTATTTTAGTAATTT
36413930 GGTAAACTAA
Statistics
Matches: 439, Mismatches: 56, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.00
53 13 0.03
54 374 0.85
55 49 0.11
56 2 0.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTATAAACCGAGGGTAAAATGGTAATTTTGTAAACTA
Found at i:36413466 original size:81 final size:79
Alignment explanation
Indices: 36413381--36413909 Score: 610
Period size: 81 Copynumber: 6.5 Consensus size: 79
36413371 GAGGGTATTT
* *** * ** *
36413381 TGGTAATTTTGTAAACCGAGGGTATTTTGGTAATTTTGTAAA-CTAAGGGTATTTTAGTAATTTT
1 TGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATC-AAGGGTA--AAAGTAATTCT
36413445 ATAAATCGAGGGTAAAA
63 ATAAATCGAGGGTAAAA
*** *
36413462 TGGTAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACGATAATTCTG
1 TGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAA-G-TAATTCTA
36413527 TAAATCGAGGGTAAAA
64 TAAATCGAGGGTAAAA
* * *
36413543 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTA
1 TGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAA--GTAATTCTA
36413608 TAAATCGAGGGTAAAA
64 TAAATCGAGGGTAAAA
* * * *
36413624 TGGTAATTTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCT
1 TGGTAATTT-TGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAA-G-TAATTCT
**
36413689 GCAAATCGAGGGTAAAA
63 ATAAATCGAGGGTAAAA
* * *
36413706 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
1 TGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAA-G-TAATTCTA
36413771 TAAATCGAGGGTAAAA
64 TAAATCGAGGGTAAAA
* * * * * * *
36413787 CGGTAATTCTATAAATCGAGAGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTG
1 TGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAA--GTAATTCTA
36413852 TAAATCGAGGGTAAAA
64 TAAATCGAGGGTAAAA
* * * *
36413868 CGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAA
36413910 CTAAGGTATT
Statistics
Matches: 402, Mismatches: 39, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
79 1 0.00
80 1 0.00
81 324 0.81
82 76 0.19
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.30
Consensus pattern (79 bp):
TGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAAGTAATTCTATA
AATCGAGGGTAAAA
Found at i:36413486 original size:27 final size:27
Alignment explanation
Indices: 36413437--36413909 Score: 685
Period size: 27 Copynumber: 17.5 Consensus size: 27
36413427 GGGTATTTTA
*
36413437 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * **
36413464 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
36413491 ATAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36413518 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
36413545 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36413572 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
36413599 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
36413626 GTAATTTCTATAAATTGAGGGTAAAATG
1 GTAA-TTCTATAAATCGAGGGTAAAATG
*
36413654 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* **
36413681 ATAATTCTGCAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
36413708 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36413735 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36413762 ATAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
36413789 GTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
36413816 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36413843 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
36413870 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
36413897 GTAATTCTGTAAA
1 GTAATTCTATAAA
36413910 CTAAGGTATT
Statistics
Matches: 408, Mismatches: 37, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
27 382 0.94
28 26 0.06
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:36415573 original size:25 final size:26
Alignment explanation
Indices: 36415529--36415598 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
36415519 CTCTTTCAAT
* * *
36415529 AACTGGGGCAAAGTCATTTTTGA-TA
1 AACTGGGGCAAAGCCCTTTTTCAGTA
*
36415554 AATTGGGGCAAAGCCC-TTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTTCAGTA
36415579 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
36415599 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
24 5 0.13
25 30 0.79
26 3 0.08
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTTCAGTA
Found at i:36415866 original size:27 final size:27
Alignment explanation
Indices: 36415803--36416016 Score: 270
Period size: 27 Copynumber: 8.0 Consensus size: 27
36415793 GGGCAAAATG
* * * * *
36415803 GTAATTTTACCCCACAAGGGTA-CTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
36415829 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
36415855 GATATTTCTACCCTACAAGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
36415883 GTAATTCTACGCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
36415910 GTAATTCTACCTTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36415937 GTAATTCTACCCTACAGGGTTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
36415964 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
36415991 GTAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
36416017 GATATTTTAC
Statistics
Matches: 165, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
26 20 0.12
27 144 0.87
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:36415929 original size:81 final size:81
Alignment explanation
Indices: 36415803--36416023 Score: 311
Period size: 81 Copynumber: 2.7 Consensus size: 81
36415793 GGGCAAAATG
* * * *
36415803 GTAATTTTACCCCACAAGGGTA-CTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
36415867 CTACAAGGG-TATTTCA
66 CTAC-AGGGTTATTTCA
* * * * * *
36415883 GTAATTCTACGCTATAAGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
36415948 CTACAGGGTTATTTCA
66 CTACAGGGTTATTTCA
* *
36415964 GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGATATTT
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTT
36416024 TACAAATCGA
Statistics
Matches: 121, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
80 22 0.18
81 99 0.82
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
CTACAGGGTTATTTCA
Found at i:36416130 original size:81 final size:81
Alignment explanation
Indices: 36416045--36416212 Score: 221
Period size: 81 Copynumber: 2.1 Consensus size: 81
36416035 AGTATTTCGA
*
36416045 TAATTTCACAAATCAAGAGTATTTTGGTAATTTTACAAG-CCAAGGGCATTTTGGTAATTTTACA
1 TAATTTCACAAACCAAGAGTATTTTGGTAATTTTA-AAGACCAAGGGCATTTTGGTAATTTTACA
*
36416109 AACCAGGGGTATTTTAG
65 AACCAAGGGTATTTTAG
* * * ** * * * *
36416126 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTATAA
1 TAATTTCACAAACCAAGAGTATTTTGGTAATTTTAAAGACCAAGGGCATTTTGGTAATTTTACAA
36416191 ACCAAGGGTATTTTAG
66 ACCAAGGGTATTTTAG
36416207 TAATTT
1 TAATTT
36416213 TGTAAATCGA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 74 0.99
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
TAATTTCACAAACCAAGAGTATTTTGGTAATTTTAAAGACCAAGGGCATTTTGGTAATTTTACAA
ACCAAGGGTATTTTAG
Found at i:36416172 original size:27 final size:27
Alignment explanation
Indices: 36416020--36416335 Score: 170
Period size: 27 Copynumber: 11.7 Consensus size: 27
36416010 GTATTTCGAT
* * *
36416020 ATTTTACAAATCGAGAGTA-TTTCGATA
1 ATTTTATAAATCGAGGGTATTTTAG-TA
* * * * *
36416047 ATTTCACAAATCAAGAGTATTTTGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* ** * * *
36416074 ATTTTACAAGCCAAGGGCATTTTGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* *
36416101 ATTTTACAAA-CCAGGGGTATTTTAGTA
1 ATTTTATAAATCGA-GGGTATTTTAGTA
* * *
36416128 ATTTTACAAA-CCAGGGGTATTTTGGTA
1 ATTTTATAAATCGA-GGGTATTTTAGTA
** *
36416155 ATTTTATTGATCGAGGGTATTTTGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* *
36416182 ATTTTATAAACCAAGGGTATTTTAGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* **
36416209 ATTTTGTAAATCGAGGGTAAATTAGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* *** *
36416236 ATTTTGTAAATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* * *****
36416263 ATTCTATAAATTGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* *** *
36416290 ATTCTATAAATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTAGTA
* *
36416317 ATTCTATAAATTGAGGGTA
1 ATTTTATAAATCGAGGGTA
36416336 AAACGATAAT
Statistics
Matches: 250, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 242 0.97
28 6 0.02
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (27 bp):
ATTTTATAAATCGAGGGTATTTTAGTA
Found at i:36416227 original size:81 final size:81
Alignment explanation
Indices: 36416087--36416272 Score: 212
Period size: 81 Copynumber: 2.3 Consensus size: 81
36416077 TTACAAGCCA
* * * ** *
36416087 AGGGCATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTG
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAATTA
**
36416152 GTAATTTTATTGATCG
66 GTAATTTTATAAATCG
** *
36416168 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAAATC-GAGGGTAAATT
1 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTAAATT
*
36416232 AGTAATTTTGTAAATCG
65 AGTAATTTTATAAATCG
*** *
36416249 AGGGTAAAATGGTAATTCTATAAA
1 AGGGTATTTTGGTAATTTTATAAA
36416273 TTGAGGGTAA
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 87 0.99
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.39
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAAATTA
GTAATTTTATAAATCG
Found at i:36416237 original size:54 final size:54
Alignment explanation
Indices: 36416020--36416281 Score: 220
Period size: 54 Copynumber: 4.9 Consensus size: 54
36416010 GTATTTCGAT
* * * * * * * * * *
36416020 ATTTTACAAATCGAGAGTATTTCGATAATTTCACAAATCAAGAGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTA
* * * *
36416074 ATTTTACAAGCCAAGGGCATTTTGGTAATTTTACAAA-CCAGGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGA-GGGTATTTTAGTA
* ** *
36416128 ATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTA
* * * **
36416182 ATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAATTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTA
** * * *** * *
36416236 ATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGAGGGTA
36416282 AAACGGTAAT
Statistics
Matches: 168, Mismatches: 38, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
53 2 0.01
54 164 0.98
55 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (54 bp):
ATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTA
Found at i:36416336 original size:27 final size:27
Alignment explanation
Indices: 36416206--36416670 Score: 624
Period size: 27 Copynumber: 17.2 Consensus size: 27
36416196 GGGTATTTTA
* * * *
36416206 GTAATTTTGTAAATCGAGGGTAAATTA
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36416233 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36416260 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
36416287 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36416314 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36416341 ATAATTCTATAAATCGAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
36416368 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
36416395 ATAATTCTGTAAATCGAGGGTAAACTG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
36416422 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
36416449 GTAATTCTGTAAATCAAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36416476 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36416503 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
36416530 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
36416557 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36416584 ATAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
36416611 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
36416638 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
36416665 GTAATT
1 GTAATT
36416671 TTACAAATTA
Statistics
Matches: 389, Mismatches: 49, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 389 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:36416673 original size:81 final size:81
Alignment explanation
Indices: 36416206--36416670 Score: 689
Period size: 81 Copynumber: 5.7 Consensus size: 81
36416196 GGGTATTTTA
* * * * * * *
36416206 GTAATTTTGTAAATCGAGGGTAAATTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTATA
*
36416271 AATTGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* *
36416287 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGATAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTATA
* *
36416352 AATCGAAGGTAAAATG
66 AATCGAGGGTAAAACG
* * *
36416368 ATAATTCTATAAATCGAGGGTAAAATGATAATTCTGTAAATCGAGGGT-AAACTGGTAATTCTAT
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAAC-GGTAATTCTAT
36416432 AAATCGAGGGTAAAACG
65 AAATCGAGGGTAAAACG
* * * * *
36416449 GTAATTCTGTAAATCAAAGGTAAAATGGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTATA
36416514 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* *
36416530 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGATAATTTTATA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTATA
*
36416595 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAACG
* *
36416611 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAACGGTAATT
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGGTAATT
36416671 TTACAAATTA
Statistics
Matches: 344, Mismatches: 38, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
80 4 0.01
81 336 0.98
82 4 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAACG
Found at i:36417812 original size:18 final size:18
Alignment explanation
Indices: 36417791--36417841 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
36417781 ACAATTCTTT
36417791 TCTCTTCTTATTTTCTCC
1 TCTCTTCTTATTTTCTCC
*
36417809 TCTCTTCATCTA-TTTCTTC
1 TCTCTTC-T-TATTTTCTCC
*
36417828 T-TCTTCTTCTTTTC
1 TCTCTTCTTATTTTC
36417842 CTCTATAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
16 1 0.04
17 5 0.18
18 12 0.43
19 8 0.29
20 2 0.07
ACGTcount: A:0.06, C:0.31, G:0.00, T:0.63
Consensus pattern (18 bp):
TCTCTTCTTATTTTCTCC
Found at i:36419084 original size:28 final size:28
Alignment explanation
Indices: 36419044--36419135 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
36419034 GGAGGAAGCG
36419044 TTCTGGTGGCTTTGCCACAAATATCTGT
1 TTCTGGTGGCTTTGCCACAAATATCTGT
36419072 TTCTGGTGGCTTTGCCACAAATATCTGT
1 TTCTGGTGGCTTTGCCACAAATATCTGT
** * *
36419100 TTCTGGTGGCCCTGCTACAATTATCTGT
1 TTCTGGTGGCTTTGCCACAAATATCTGT
*
36419128 ATCTGGTG
1 TTCTGGTG
36419136 ACTCTATCAC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.39
Consensus pattern (28 bp):
TTCTGGTGGCTTTGCCACAAATATCTGT
Found at i:36419147 original size:56 final size:54
Alignment explanation
Indices: 36419043--36419159 Score: 135
Period size: 56 Copynumber: 2.1 Consensus size: 54
36419033 TGGAGGAAGC
** * * * *
36419043 GTTCTGGTGGCTTTGCCACAAATATCTGTTTCTGGTGGCTTTGCCACAAATATCT
1 GTTCTGGTGGCCCTGCCACAAATATCTGTATCTGGTGACTCTACCAC-AATATCT
* * *
36419098 GTTTCTGGTGGCCCTGCTACAATTATCTGTATCTGGTGACTCTATCACAATATCT
1 G-TTCTGGTGGCCCTGCCACAAATATCTGTATCTGGTGACTCTACCACAATATCT
36419153 GTTCTGG
1 GTTCTGG
36419160 CAGCGATGCT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
54 6 0.12
55 9 0.17
56 37 0.71
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.38
Consensus pattern (54 bp):
GTTCTGGTGGCCCTGCCACAAATATCTGTATCTGGTGACTCTACCACAATATCT
Found at i:36426904 original size:20 final size:20
Alignment explanation
Indices: 36426875--36426919 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
36426865 AACACATGTA
*
36426875 TTCATAAAATTTTAGAAATT
1 TTCATAAAATTTTACAAATT
* *
36426895 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAAATT
36426915 TTCAT
1 TTCAT
36426920 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (20 bp):
TTCATAAAATTTTACAAATT
Found at i:36429641 original size:18 final size:18
Alignment explanation
Indices: 36429618--36429655 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
36429608 TGTTTTGAAG
36429618 TTTGTTTAAATCTTTCAT
1 TTTGTTTAAATCTTTCAT
36429636 TTTGTTTAAATCTTTCAT
1 TTTGTTTAAATCTTTCAT
36429654 TT
1 TT
36429656 AAGAAAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTGTTTAAATCTTTCAT
Found at i:36432381 original size:48 final size:48
Alignment explanation
Indices: 36432267--36432405 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
36432257 ACCACGCTAC
* *
36432267 ATATTTAACCATGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATATGTAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
36432314 ATATGTAACCATGGCATATCCACCTAGCACCACGTTACATGTATCAAT
1 ATATGTAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * * *
36432362 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATATGTAACCATGGTATATCCACTTAGCACCACGTTACATGTAT
36432406 AACTGTGGTA
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 34 0.42
48 47 0.58
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (48 bp):
ATATGTAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:36435317 original size:81 final size:81
Alignment explanation
Indices: 36435170--36435326 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 81
36435160 ATTACCAAAG
* * **
36435170 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGACTTACAGAATTACCGTTTTACCCTTGATT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTTGACTTACAGAATTACCATTTTACCCTCAATT
* *
36435235 TATAGAATTACCGTTT
66 TACAAAATTACCGTTT
* *
36435251 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTTTACCCTCAATT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTTGACTTACAGAATTACCATTTTACCCTCAATT
36435316 TACAAAATTAC
66 TACAAAATTAC
36435327 TAAAATACTC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACTATTTTACCCTTGACTTACAGAATTACCATTTTACCCTCAATT
TACAAAATTACCGTTT
Found at i:36435327 original size:27 final size:27
Alignment explanation
Indices: 36435170--36435328 Score: 192
Period size: 27 Copynumber: 5.9 Consensus size: 27
36435160 ATTACCAAAG
* *
36435170 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * **
36435197 TACCCTTGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * **
36435224 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
36435251 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
36435278 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
36435305 TACCCTCAATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
36435329 AAATACTCTT
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:36435327 original size:54 final size:54
Alignment explanation
Indices: 36435170--36435328 Score: 219
Period size: 54 Copynumber: 2.9 Consensus size: 54
36435160 ATTACCAAAG
* * * **
36435170 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGACTTACAGAATTACCGTTT
1 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
* *
36435224 TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
* * * *
36435278 TACCCTTGATTTACAGAATTACTATTTTACCCTCAATTTACAAAATTACTA
1 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTA
36435329 AAATACTCTT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTATTT
Found at i:36435345 original size:54 final size:54
Alignment explanation
Indices: 36435224--36435391 Score: 156
Period size: 54 Copynumber: 3.1 Consensus size: 54
36435214 ATTACCGTTT
* * * * * ***
36435224 TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACTAAAA
*
36435278 TACCCTTGATTTACAGAATTACTATTTTACCCTCAATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACTAAAA
* * * *** * ** * *
36435332 TACTCTTGGTTTACAAAATTACCAAAATACCCTCTATCAATAAAATTACCAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACTAAAA
36435386 TACCCT
1 TACCCT
36435392 AGTCTGTAAA
Statistics
Matches: 92, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.37
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACTAAAA
Found at i:36435352 original size:81 final size:81
Alignment explanation
Indices: 36435157--36435353 Score: 205
Period size: 81 Copynumber: 2.4 Consensus size: 81
36435147 CTCGACTTGT
* * * * *
36435157 AAAATTACCAAAGTACCCTCGATTTATAGAATTACTGTTTTACCCTTGACTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTACAAAATTACTATTTTACCCTTGACTTACAGAATTACCAT
** *
36435222 TTTACCCTTGATTTAT
66 TTTACCCTCAATTTAC
* **** * * * *
36435238 AGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTAT
1 AAAATTACCAAAATACCCTCGATTTACAAAATTACTATTTTACCCTTGACTTACAGAATTACCAT
36435303 TTTACCCTCAATTTAC
66 TTTACCCTCAATTTAC
* * * *
36435319 AAAATTACTAAAATACTCTTGGTTTACAAAATTAC
1 AAAATTACCAAAATACCCTCGATTTACAAAATTAC
36435354 CAAAATACCC
Statistics
Matches: 93, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAAAATTACTATTTTACCCTTGACTTACAGAATTACCAT
TTTACCCTCAATTTAC
Found at i:36435376 original size:27 final size:27
Alignment explanation
Indices: 36435346--36435526 Score: 195
Period size: 27 Copynumber: 6.7 Consensus size: 27
36435336 CTTGGTTTAC
**
36435346 AAAATTACCAAAATACCCTCTA-TCAAT
1 AAAATTACCAAAATACCC-CTAGTCTGT
36435373 AAAATTACCAAAATA-CCCTAGTCTGT
1 AAAATTACCAAAATACCCCTAGTCTGT
* * *
36435399 AAAATTGCTAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTCTGT
* *
36435426 AAAATTACCAAAATACTCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTCTGT
* * *
36435453 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTCTGT
* * * * * *
36435480 GAAACTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCCTAGTCTGT
36435507 AAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
36435527 GAGTTACAAA
Statistics
Matches: 130, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
25 3 0.02
26 18 0.14
27 109 0.84
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTCTGT
Found at i:36435434 original size:80 final size:81
Alignment explanation
Indices: 36435319--36435526 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
36435309 CTCAATTTAC
* * **
36435319 AAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAATACCCTCTA-TCAATAAAATTACCA
1 AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCC-CTAGTCAATAAAATTACCA
36435383 AAATACC-CTAGTCTGT
65 AAATACCACTAGTCTGT
* * * ***
36435399 AAAATTGCTAAAATACCCCTAGTTTGTAAAATTACCAAAATACTCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTCAATAAAATTACCAA
* *
36435464 AATACCACTGGTTTGT
66 AATACCACTAGTCTGT
* * ** *
36435480 GAAACTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCT
1 AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCT
36435527 GAGTTACAAA
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 3 0.03
80 57 0.54
81 46 0.43
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTCAATAAAATTACCAA
AATACCACTAGTCTGT
Found at i:36435469 original size:54 final size:53
Alignment explanation
Indices: 36435319--36435531 Score: 221
Period size: 54 Copynumber: 3.9 Consensus size: 53
36435309 CTCAATTTAC
* * * ** ***
36435319 AAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAATACCCTCTA-TCAAT
1 AAAATTACCAAAATAC-CCTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGT
* * *
36435373 AAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* *
36435426 AAAATTACCAAAATACTCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATAC-CCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* * * *
36435480 GAAACTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTGAGTT
1 AAAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCCT-AGTT
36435532 ACAAAGTTAC
Statistics
Matches: 133, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
52 3 0.02
53 41 0.31
54 86 0.65
55 3 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
Found at i:36435521 original size:81 final size:80
Alignment explanation
Indices: 36435346--36435532 Score: 223
Period size: 81 Copynumber: 2.3 Consensus size: 80
36435336 CTTGGTTTAC
* * * *
36435346 AAAATTACCAAAATACCCTCTA-TCAATAAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAA
1 AAAATTACCAAAATACCC-CTAGTTAATAAAATTACCAAAATACCCTAGTCTGTAAAACTACCAA
*
36435410 AATACCCCTAGTTTGT
65 AATACCCCTAATTTGT
* ** * * * *
36435426 AAAATTACCAAAATACTCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAACTACCGA
1 AAAATTACCAAAATACCCCTAGTTAATAAAATTACCAAAATACC-CTAGTCTGTAAAACTACCAA
*
36435491 AATACCCTTAATTTGT
65 AATACCCCTAATTTGT
36435507 AAAATTACCAAAATACCCCTGAGTTA
1 AAAATTACCAAAATACCCCT-AGTTA
36435533 CAAAGTTACA
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 36 0.40
81 46 0.52
82 4 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCCCTAGTTAATAAAATTACCAAAATACCCTAGTCTGTAAAACTACCAAA
ATACCCCTAATTTGT
Found at i:36435552 original size:54 final size:54
Alignment explanation
Indices: 36435448--36435592 Score: 127
Period size: 54 Copynumber: 2.7 Consensus size: 54
36435438 ATACTCCTAG
** * *
36435448 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAACTACCGAAATACCCTTAA
1 TTTGTAAAATTACCAAAATACCACTGGTTTGACAAACTACAGAAACACCCTTAA
* * *
36435502 TTTGTAAAATTACCAAAATACCCCTGAG-TT-ACAAAGTTACAGAAACACCCTTGAG
1 TTTGTAAAATTACCAAAATACCACTG-GTTTGACAAA-CTACAGAAACACCCTT-AA
* * *
36435557 TTTCTAAAAATTA-TAGAAATACCATTGGTTT-ACAAA
1 TTTGT-AAAATTACCA-AAATACCACTGGTTTGACAAA
36435593 ATTACTAAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
53 3 0.04
54 40 0.54
55 8 0.11
56 23 0.31
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGGTTTGACAAACTACAGAAACACCCTTAA
Found at i:36435603 original size:27 final size:27
Alignment explanation
Indices: 36435563--36435614 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
36435553 TGAGTTTCTA
36435563 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
36435590 AAAATTACTA-AAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
36435615 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:36435705 original size:27 final size:27
Alignment explanation
Indices: 36435675--36435751 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
36435665 TTAGATAAAA
*
36435675 GACCGTAAAGCCTCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
36435702 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* *
36435729 GATCGTAATA-CCCCTGTATGGTA
1 GACCGTAA-AGCCCCTGTAGGGTA
36435752 CAATGACGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 45 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:36436643 original size:24 final size:25
Alignment explanation
Indices: 36436567--36436636 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
36436557 AGGAAGTGCT
* *
36436567 AAAAA-GGCTATGCCCCAGTTTACC
1 AAAAAGGGCTTTGCCCCAGTTTATC
*
36436591 AAAAAGGGCTTTGCCCTAGTTTATC
1 AAAAAGGGCTTTGCCCCAGTTTATC
36436616 AAAAAGGGCTTTGCCCCAGTT
1 AAAAAGGGCTTTGCCCCAGTT
36436637 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 5 0.12
25 36 0.88
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTTATC
Found at i:36438873 original size:79 final size:81
Alignment explanation
Indices: 36438737--36438921 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36438727 TTGAATGATG
* *
36438737 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36438801 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36438816 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36438878 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
36438896 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36438922 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36438935 original size:40 final size:40
Alignment explanation
Indices: 36438738--36438921 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
36438728 TGAATGATGT
* * * *
36438738 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36438778 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36438818 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36438856 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36438897 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36438922 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36438943 original size:79 final size:79
Alignment explanation
Indices: 36438790--36438954 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36438780 GGACTAAGAT
* * **
36438790 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36438855 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36438869 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36438932 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36438948 CCGAAGG
1 CCGAAGG
36438955 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36446838 original size:79 final size:81
Alignment explanation
Indices: 36446702--36446886 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36446692 TTGAATGATG
* *
36446702 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36446766 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36446781 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36446843 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
36446861 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36446887 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36446900 original size:40 final size:40
Alignment explanation
Indices: 36446703--36446886 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
36446693 TGAATGATGT
* * * *
36446703 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36446743 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36446783 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36446821 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36446862 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36446887 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36446908 original size:79 final size:79
Alignment explanation
Indices: 36446755--36446919 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36446745 GGACTAAGAT
* * **
36446755 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36446820 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36446834 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36446897 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36446913 CCGAAGG
1 CCGAAGG
36446920 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36448730 original size:15 final size:15
Alignment explanation
Indices: 36448707--36448748 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
36448697 GAAGCCCAGA
36448707 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
36448722 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
36448737 ATAAGGAAATCC
1 ATAAGGAAATCC
36448749 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:36450548 original size:34 final size:34
Alignment explanation
Indices: 36450509--36450576 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
36450499 TCGAGACTAA
36450509 ACCAAGAACATTGAAAATCTTTGGGAAACTTAAC
1 ACCAAGAACATTGAAAATCTTTGGGAAACTTAAC
* *
36450543 ACCAAGAACGTTGAAAATCTTTGGGCAACTTAAC
1 ACCAAGAACATTGAAAATCTTTGGGAAACTTAAC
36450577 TAATTTTCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (34 bp):
ACCAAGAACATTGAAAATCTTTGGGAAACTTAAC
Found at i:36452174 original size:84 final size:85
Alignment explanation
Indices: 36452033--36452231 Score: 330
Period size: 84 Copynumber: 2.4 Consensus size: 85
36452023 TGTATAACAG
* *
36452033 TGGCATATCCAC-TAGCACCACGTTACATTTTTAACTGTGGAATATCCACTTTGCACCACGTTAA
1 TGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGGAATATCCACTTAGCACCACGTTAA
36452097 TGAATCAATATATGTAACCA
66 TGAATCAATATATGTAACCA
**
36452117 TGGCATATCCACTTAGCACCACGTTACATGTTTAAC-GTGTTATATCCACTTAGCACCACGTTAA
1 TGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGGAATATCCACTTAGCACCACGTTAA
36452181 TGAATCAATATATGTAACCA
66 TGAATCAATATATGTAACCA
* *
36452201 TGGAATATCCACTTAGCACCATGTTACATGT
1 TGGCATATCCACTTAGCACCACGTTACATGT
36452232 ATCAATATGT
Statistics
Matches: 108, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
84 86 0.80
85 22 0.20
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (85 bp):
TGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGGAATATCCACTTAGCACCACGTTAA
TGAATCAATATATGTAACCA
Found at i:36452257 original size:48 final size:46
Alignment explanation
Indices: 36452144--36452270 Score: 164
Period size: 48 Copynumber: 2.7 Consensus size: 46
36452134 ACCACGTTAC
* *
36452144 ATGTTTAACGTGTTATATCCACTTAGCACCACGTTAATGAATCAAT
1 ATGTGTAACGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
* * * * *
36452190 ATATGTAACCATGGAATATCCACTTAGCACCATGTTACATGTATCAAT
1 ATGTGTAA-CGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
36452238 ATGTGTAATCGTGGTATATCCACTTAGCACCAC
1 ATGTGTAA-CGTGGTATATCCACTTAGCACCAC
36452271 ATTTTTTTCA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
46 6 0.09
47 24 0.36
48 37 0.55
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (46 bp):
ATGTGTAACGTGGTATATCCACTTAGCACCACGTTAATGAATCAAT
Found at i:36460778 original size:20 final size:20
Alignment explanation
Indices: 36460753--36460804 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
36460743 TTAGATAGTC
36460753 ACACGCCCGTGTGGCTCGGG
1 ACACGCCCGTGTGGCTCGGG
*
36460773 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTCGGG
36460793 ACACGCCCGTGT
1 ACACGCCCGTGT
36460805 CCTCAGCCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.12, C:0.35, G:0.37, T:0.17
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTCGGG
Found at i:36462331 original size:18 final size:18
Alignment explanation
Indices: 36462308--36462366 Score: 77
Period size: 18 Copynumber: 3.3 Consensus size: 18
36462298 TGATGACATA
36462308 ATAAACATAATCATAAAC
1 ATAAACATAATCATAAAC
*
36462326 ATAAACATAAACATAAAC
1 ATAAACATAATCATAAAC
*
36462344 AT-AATAT-ATCATGAAAC
1 ATAAACATAATCAT-AAAC
36462361 ATAAAC
1 ATAAAC
36462367 CTTTGACTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
16 4 0.11
17 10 0.29
18 21 0.60
ACGTcount: A:0.61, C:0.15, G:0.02, T:0.22
Consensus pattern (18 bp):
ATAAACATAATCATAAAC
Found at i:36462366 original size:6 final size:6
Alignment explanation
Indices: 36462308--36462347 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
36462298 TGATGACATA
*
36462308 ATAAAC ATAATC ATAAAC ATAAAC ATAAAC ATAAAC ATAA
1 ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAA
36462348 TATATCATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.65, C:0.15, G:0.00, T:0.20
Consensus pattern (6 bp):
ATAAAC
Found at i:36467352 original size:41 final size:40
Alignment explanation
Indices: 36467295--36467402 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 40
36467285 GACATATCGA
36467295 CTAAATGTGGCACTTAGTGTGCGATTCAAAAATAGCTTCGG
1 CTAAATGTGGCACTTAGTGTGCGATTC-AAAATAGCTTCGG
* * * *
36467336 CTAAATGTGGCACTTAGTCTGCGGTTCTAGATAGCTTCGG
1 CTAAATGTGGCACTTAGTGTGCGATTCAAAATAGCTTCGG
* *** *
36467376 CTATATACAGCACTTAGTGTGTGATTC
1 CTAAATGTGGCACTTAGTGTGCGATTC
36467403 GAGATAGTTT
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
40 31 0.55
41 25 0.45
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (40 bp):
CTAAATGTGGCACTTAGTGTGCGATTCAAAATAGCTTCGG
Found at i:36467434 original size:40 final size:40
Alignment explanation
Indices: 36467304--36467435 Score: 122
Period size: 40 Copynumber: 3.3 Consensus size: 40
36467294 ACTAAATGTG
* * * ***
36467304 GCACTTAGTGTGCGATTCAAAAATAGCTTCGGCTAAATGTG
1 GCACTTAGTGTGCGATTC-GAGATAGCTTCGGCTATATACA
* * *
36467345 GCACTTAGTCTGCGGTTCTAGATAGCTTCGGCTATATACA
1 GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACA
* * * *
36467385 GCACTTAGTGTGTGATTCGAGATAGTTTCGTCTATGTAC-
1 GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACA
36467424 GACACTTAGTGT
1 G-CACTTAGTGT
36467436 ACGAGATATT
Statistics
Matches: 75, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 58 0.77
41 16 0.21
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACA
Found at i:36467503 original size:28 final size:28
Alignment explanation
Indices: 36467424--36467519 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
36467414 GTCTATGTAC
* * *
36467424 GACACTTAGTGTACGAGATATTAAGCAT
1 GACACTTAGTGTGCGAGATATTGAGAAT
* * *
36467452 GGCACTTAGTGTGCGAAACATTGAGAAT
1 GACACTTAGTGTGCGAGATATTGAGAAT
* * *
36467480 GACACTTAATGTGCGAGATGTTGAGTAT
1 GACACTTAGTGTGCGAGATATTGAGAAT
36467508 GGA-ACTTAGTGT
1 -GACACTTAGTGT
36467520 ATGAGACGTC
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
28 52 0.96
29 2 0.04
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (28 bp):
GACACTTAGTGTGCGAGATATTGAGAAT
Found at i:36473365 original size:13 final size:13
Alignment explanation
Indices: 36473347--36473373 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36473337 GTCTTACAAA
36473347 TTCGTTTAATATC
1 TTCGTTTAATATC
36473360 TTCGTTTAATATC
1 TTCGTTTAATATC
36473373 T
1 T
36473374 ACATGATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (13 bp):
TTCGTTTAATATC
Found at i:36489941 original size:770 final size:771
Alignment explanation
Indices: 36488962--36490506 Score: 3011
Period size: 770 Copynumber: 2.0 Consensus size: 771
36488952 ATTTTAATAA
* *
36488962 TTTCTACGTCCCAATTTCATATTTTCATATATTTCATTAATTTATTAAACAATTACTTGGTGTTA
1 TTTCTACGTCCCAATTTCATAATTTCATATATTTCATTAATTTATTAAACAATTAATTGGTGTTA
36489027 ACAACAAATTTAAGTGGAAAGGTGACGACTTATATAGGAAAAATCCTATATATTTTTCAGTGTAC
66 ACAACAAATTTAAGTGGAAAGGTGACGACTTATATAGGAAAAATCCTATATATTTTTCAGTGTAC
36489092 ACACCCCAAACTTAAATCATTGCTCGTCTCGAGTAATGTTCATGCATAGCACAAGGTTTTGCTAA
131 ACACCCCAAACTTAAATCATTGCTCGTCTCGAGTAATGTTCATGCATAGCACAAGGTTTTGCTAA
36489157 AGCAAAATTGCTAAAAGTGTAAGCAGCATCAATCTTTGCCCCATAATTATGTATTAATAAATTCA
196 AGCAAAATTGCTAAAAGTGTAAGCAGCATCAATCTTTGCCCCATAATTATGTATTAATAAATTCA
* *
36489222 TGCTGATAGATCTTCTTTATTGACAGGTAAATCAGAAGCAAACATTTTGAAAATTTTATACTACG
261 TGCTGATAGATCTTCTTTATTGACAAGTAAATCAGAACCAAACATTTTGAAAATTTTATACTACG
36489287 TTTCAAGATATGCCAACATGAATCATAGTATGTATATATGTCACAACCATAGATAATATTCTTCA
326 TTTCAAGATATGCCAACATGAATCATAGTATGTATATATGTCACAACCATAGATAATATTCTTCA
36489352 TTCAACATAATTTCACCTCAATCAACCAAAACAATCATAAGGCTTATTTATGATCTTCATATGTT
391 TTCAACATAATTTCACCTCAATCAACCAAAACAATCATAAGGCTTATTTATGATCTTCATATGTT
*
36489417 GAGCTTAAAACTCCCTCTCCACTAGTGTAGGCGACATAATCATAATATCAATAGGTGTTTTATAT
456 GAGCTTAAAACTCCATCTCCACTAGTGTAGGCGACATAATCATAATATCAATAGGTGTTTTATAT
*
36489482 GGTTGCAATAGGGCTCGGTTAAAGGTAGGGATTTTAAGAGATGACACATTTCGGTTTCAAAATCT
521 GGTTGCAATAGGGCTCGGTTAAAGGTAGGGATTTTAAGAGATGACACATTTCGATTTCAAAATCT
*
36489547 TAACCTTTAATTTTGCCTTGGATTTTTTAAAATACAGCCTTTTTCTTTAAGTGAACCTTTGGAAT
586 TAACCTTTAATTTTGCCTTGGATTTTTTAAAATACAGCCTTTTTCTTTAAGTGAACCTCTGGAAT
36489612 ACCCCCAAACTTATTTTGAACTCATGCTCATACATTTTTCTTTGTGGAAAATAAGCAAACTTTTC
651 ACCCCCAAACTTATTTTGAACTCATGCTCATACATTTTTCTTTGTGGAAAATAAGCAAACTTTTC
36489677 TTCGCTCTTTC-TTTTTTTAGCATCTATTTTAAGGTAAATTTCACCTATTTCATAG
716 TTCGCTCTTTCTTTTTTTTAGCATCTATTTTAAGGTAAATTTCACCTATTTCATAG
36489732 TTTCTACGTCCCAATTTCATAATTTCATATATTTCATTAATTTATTAAACAATTAATTGGTGTTA
1 TTTCTACGTCCCAATTTCATAATTTCATATATTTCATTAATTTATTAAACAATTAATTGGTGTTA
36489797 ACAACAAATTTAAGTGGAAAGGTGACGACTTATATAGGAAAAATCCTATATATTTTTCAGTGTAC
66 ACAACAAATTTAAGTGGAAAGGTGACGACTTATATAGGAAAAATCCTATATATTTTTCAGTGTAC
36489862 ACACCCCAAACTTAAATCATTGCTCGTCTCGAGTAATGTTCATGCATAGCACAAGGTTTTGCTAA
131 ACACCCCAAACTTAAATCATTGCTCGTCTCGAGTAATGTTCATGCATAGCACAAGGTTTTGCTAA
36489927 AGCAAAATTGCTAAAAGTGTAAGCAGCATCAATCTTTGCCCCATAATTATGTATTAATAAATTCA
196 AGCAAAATTGCTAAAAGTGTAAGCAGCATCAATCTTTGCCCCATAATTATGTATTAATAAATTCA
*
36489992 TGCTGATAGATCTTCTTTATTGACAAGTAAATCATAACCAAACATTTTGAAAATTTTATACTACG
261 TGCTGATAGATCTTCTTTATTGACAAGTAAATCAGAACCAAACATTTTGAAAATTTTATACTACG
36490057 TTTCAAGATATGCCAACATGAATCATAGTATGTATATATGTCACAACCATAGATAATATTCTTCA
326 TTTCAAGATATGCCAACATGAATCATAGTATGTATATATGTCACAACCATAGATAATATTCTTCA
36490122 TTCAACATAATTTCACCTCAATCAACCAAAACAATCATAAGGCTTATTTATGATCTTCATATGTT
391 TTCAACATAATTTCACCTCAATCAACCAAAACAATCATAAGGCTTATTTATGATCTTCATATGTT
36490187 GAGCTTAAAACTCCATCTCCACTAGTGTAGGCGACATAATCATAATATCAATAGGTGTTTTATAT
456 GAGCTTAAAACTCCATCTCCACTAGTGTAGGCGACATAATCATAATATCAATAGGTGTTTTATAT
36490252 GGTTGCAATAGGGCTCGGTTAAAGGTAGGGATTTTAAGAGATGACACATTTCGATTTCAAAATCT
521 GGTTGCAATAGGGCTCGGTTAAAGGTAGGGATTTTAAGAGATGACACATTTCGATTTCAAAATCT
36490317 TAACCTTTAATTTTGCCTTGGATTTTTTAAAATACAGCCTTTTTCTTTAAGTGAACCTCTGGAAT
586 TAACCTTTAATTTTGCCTTGGATTTTTTAAAATACAGCCTTTTTCTTTAAGTGAACCTCTGGAAT
36490382 ACCCCCAAACTTATTTTGAACTCATGCTCATACATTTTTCTTTGTGGAAAATAAGCAAACTTTTC
651 ACCCCCAAACTTATTTTGAACTCATGCTCATACATTTTTCTTTGTGGAAAATAAGCAAACTTTTC
36490447 TTCGCTCTTTCTTTTTTTTAGCATCTATTTTAAGGTAAATTTCACCTATTTCATAG
716 TTCGCTCTTTCTTTTTTTTAGCATCTATTTTAAGGTAAATTTCACCTATTTCATAG
36490503 TTTC
1 TTTC
36490507 CATGATTCAA
Statistics
Matches: 766, Mismatches: 8, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
770 718 0.94
771 48 0.06
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.37
Consensus pattern (771 bp):
TTTCTACGTCCCAATTTCATAATTTCATATATTTCATTAATTTATTAAACAATTAATTGGTGTTA
ACAACAAATTTAAGTGGAAAGGTGACGACTTATATAGGAAAAATCCTATATATTTTTCAGTGTAC
ACACCCCAAACTTAAATCATTGCTCGTCTCGAGTAATGTTCATGCATAGCACAAGGTTTTGCTAA
AGCAAAATTGCTAAAAGTGTAAGCAGCATCAATCTTTGCCCCATAATTATGTATTAATAAATTCA
TGCTGATAGATCTTCTTTATTGACAAGTAAATCAGAACCAAACATTTTGAAAATTTTATACTACG
TTTCAAGATATGCCAACATGAATCATAGTATGTATATATGTCACAACCATAGATAATATTCTTCA
TTCAACATAATTTCACCTCAATCAACCAAAACAATCATAAGGCTTATTTATGATCTTCATATGTT
GAGCTTAAAACTCCATCTCCACTAGTGTAGGCGACATAATCATAATATCAATAGGTGTTTTATAT
GGTTGCAATAGGGCTCGGTTAAAGGTAGGGATTTTAAGAGATGACACATTTCGATTTCAAAATCT
TAACCTTTAATTTTGCCTTGGATTTTTTAAAATACAGCCTTTTTCTTTAAGTGAACCTCTGGAAT
ACCCCCAAACTTATTTTGAACTCATGCTCATACATTTTTCTTTGTGGAAAATAAGCAAACTTTTC
TTCGCTCTTTCTTTTTTTTAGCATCTATTTTAAGGTAAATTTCACCTATTTCATAG
Found at i:36491256 original size:40 final size:40
Alignment explanation
Indices: 36491178--36491401 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
36491168 ACCCAAGTAT
36491178 CTTCGGGA-TCTAG-CCGGATATAG-CAACTCA-CACAAATGC
1 CTTCGGGACT-TAGCCCGGATATAGTC-ACT-AGCACAAATGC
* **
36491217 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
36491257 CTTCGGGACTTATCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
36491297 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
36491340 TTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
36491380 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
36491402 CATCCGAATA
Statistics
Matches: 162, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 12 0.07
40 114 0.70
41 1 0.01
43 35 0.22
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:36491374 original size:83 final size:80
Alignment explanation
Indices: 36491178--36491401 Score: 285
Period size: 83 Copynumber: 2.8 Consensus size: 80
36491168 ACCCAAGTAT
* *
36491178 CTTCGGGA-TCTAG-CCGGATATAGCAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CTTCGGGACT-TAGCCCGGATATAGTAACT-AGCACAAATGCCTTCGGGACTTAGCCCGGATATA
**
36491240 GTCACTAGCATGAATGC
64 GTCACTAGCACAAATGC
* * *
36491257 CTTCGGGACTTATCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
36491321 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
36491340 TTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
36491402 CATCCGAATA
Statistics
Matches: 126, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
79 12 0.10
80 49 0.39
83 65 0.52
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:36498540 original size:11 final size:12
Alignment explanation
Indices: 36498512--36498544 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
36498502 CTCATCAAGG
36498512 ATTTATTACATA
1 ATTTATTACATA
*
36498524 ATTTATT-CATT
1 ATTTATTACATA
36498535 ATTTATTACA
1 ATTTATTACA
36498545 CTCCTACTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTTATTACATA
Found at i:36499364 original size:40 final size:40
Alignment explanation
Indices: 36499305--36499528 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
36499295 ACCCAAGTAT
* * *
36499305 CTTCGGGATTTTG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* **
36499344 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
36499384 CTTCGGGACTTATCCCGGATATAGTC-ACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
36499424 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATGC
* * *
36499467 CTTCAGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
*
36499507 CTTCGGGACTTAGTCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
36499529 CATCCGAATA
Statistics
Matches: 161, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 11 0.07
40 113 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:36499501 original size:83 final size:80
Alignment explanation
Indices: 36499318--36499528 Score: 280
Period size: 83 Copynumber: 2.6 Consensus size: 80
36499308 CGGGATTTTG
* * * **
36499318 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATG
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
36499383 CCTTCGGGACTTATC
66 CCTTCAGGACTTAGC
* *
36499398 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACA
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACA
36499462 AATGCCTTCAGGACTTAGC
62 AATGCCTTCAGGACTTAGC
* *
36499481 CCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGTCCGGATAT
1 CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
36499529 CATCCGAATA
Statistics
Matches: 114, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.01
80 49 0.43
83 64 0.56
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
CCTTCAGGACTTAGC
Found at i:36505556 original size:27 final size:28
Alignment explanation
Indices: 36505517--36505571 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
36505507 GTGCGAGTTA
36505517 CTAATTCGGGCTAAGCCCG-AGGCATTGG
1 CTAATTCGGGCTAAG-CCGAAGGCATTGG
36505545 CTAATT-GGGCTAAGCCGAAGGCATTGG
1 CTAATTCGGGCTAAGCCGAAGGCATTGG
36505572 TGCGAGTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 3 0.12
27 17 0.65
28 6 0.23
ACGTcount: A:0.24, C:0.22, G:0.33, T:0.22
Consensus pattern (28 bp):
CTAATTCGGGCTAAGCCGAAGGCATTGG
Found at i:36505658 original size:40 final size:40
Alignment explanation
Indices: 36505551--36505651 Score: 145
Period size: 40 Copynumber: 2.6 Consensus size: 40
36505541 TTGGCTAATT
*
36505551 GGGCTAAG--CCGAAGGCATTGGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
36505589 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
36505629 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
36505652 AACGAGTAGC
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
38 7 0.12
40 47 0.84
41 2 0.04
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:36513696 original size:40 final size:40
Alignment explanation
Indices: 36513505--36513687 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
36513495 TCGAATGATG
* * * *
36513505 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAT
* *
36513544 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTGGTGCGAGTTACTAAT
36513585 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAT
*
36513624 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAT
* * *
36513663 AACCAGGCTATGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATT
36513688 TGAACGAGTA
Statistics
Matches: 126, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
39 38 0.30
40 78 0.62
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAT
Found at i:36537208 original size:38 final size:38
Alignment explanation
Indices: 36537160--36537234 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
36537150 TAGTGTTAGC
* *
36537160 ACGGCCTAAGGCACGTCCGTGTTCTCTGTCATGTGGAA
1 ACGGCCTAAGGCACGCCCGTGTTCTCTATCATGTGGAA
*
36537198 ACGGCCTAAGGCACGCCCGTGTTCTCTATCGTGTGGA
1 ACGGCCTAAGGCACGCCCGTGTTCTCTATCATGTGGA
36537235 TTAGAAAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.17, C:0.28, G:0.29, T:0.25
Consensus pattern (38 bp):
ACGGCCTAAGGCACGCCCGTGTTCTCTATCATGTGGAA
Done.