Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 116 of 349
Found at i:36546035 original size:27 final size:27
Alignment explanation
Indices: 36546004--36546299 Score: 358
Period size: 27 Copynumber: 10.9 Consensus size: 27
36545994 ATAATTACCA
36546004 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
36546031 AAATACCCTCATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
36546058 AAATACCCCCACATGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
36546085 AAATACCCCTCATAGGGTAACATGATCA
1 AAATACCCC-CATAGGGTAAAATGACCG
* *
36546113 AAATACCCCAATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
36546140 AAATACCTCCATAGGATAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
36546167 AAATACCTCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
36546194 AAATACCCCTATAGGGTAAAATAACCA
1 AAATACCCCCATAGGGTAAAATGACCG
* *
36546221 AAATACCCCTATAGGGTAAAATGGCCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
36546248 AAATACCCCTATAAGGTAAAATGACGG
1 AAATACCCCCATAGGGTAAAATGACCG
* ** *
36546275 TAATACCCCTGTAAGGTAAAATGAC
1 AAATACCCCCATAGGGTAAAATGAC
36546300 TGATTTGCCC
Statistics
Matches: 237, Mismatches: 31, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 215 0.91
28 22 0.09
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:36546193 original size:109 final size:106
Alignment explanation
Indices: 36546000--36546271 Score: 391
Period size: 109 Copynumber: 2.5 Consensus size: 106
36545990 CAAAATAATT
*
36546000 ACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGATCGAAATACC
1 ACCAAAATACCCCAATAGGGTAAAATGACCGAAATACCC-CATA-GGTAAAATGATCGAAATACC
* * *
36546065 CCCACATGGTAAAATGACCGAAATACCCCTCATAGGGTAACATG
64 CCCACAGGGTAAAATGACCGAAATACCCCT-ATAGGGTAAAATA
* *
36546109 ATCAAAATACCCCAATAGGGTAAAATGATCGAAATACCTCCATAGGATAAAATGATCGAAATACC
1 ACCAAAATACCCCAATAGGGTAAAATGACCGAAATACC-CCATAGG-TAAAATGATCGAAATACC
* *
36546174 TCCATAGGGTAAAATGACCGAAATACCCCTATAGGGTAAAATA
64 CCCACAGGGTAAAATGACCGAAATACCCCTATAGGGTAAAATA
* *
36546217 ACCAAAATACCCCTATAGGGTAAAATGGCCGAAATACCCCTATAAGGTAAAATGA
1 ACCAAAATACCCCAATAGGGTAAAATGACCGAAATACCCC-AT-AGGTAAAATGA
36546272 CGGTAATACC
Statistics
Matches: 147, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
107 2 0.01
108 57 0.39
109 87 0.59
110 1 0.01
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (106 bp):
ACCAAAATACCCCAATAGGGTAAAATGACCGAAATACCCCATAGGTAAAATGATCGAAATACCCC
CACAGGGTAAAATGACCGAAATACCCCTATAGGGTAAAATA
Found at i:36547765 original size:55 final size:52
Alignment explanation
Indices: 36547635--36547820 Score: 135
Period size: 54 Copynumber: 3.5 Consensus size: 52
36547625 AGGATACCAA
* **
36547635 GTAAGACCATGCCAAGGCATGGCATTGCTAAGTTTTACAAGGTAAGGAAATCAT
1 GTAAGACCATGCCAAGGCATGGCATTGATAAG-ACTACAA-GTAAGGAAATCAT
* **
36547689 GTAAGACCATGTCAATACATGGCATTGATAA-ACTACAA-TAAGGCAAATATCCTAT
1 GTAAGACCATGCCAAGGCATGGCATTGATAAGACTACAAGTAAGG--AA-AT-C-AT
* * * * * * *
36547744 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATA-AGGTAAGGATACCAT
1 GTAAGACCATGCCAAGGCATGGCATTGATAAG-AC-TACAAGTAAGGAAATCAT
* *
36547797 GTAAGACCATGTCAAGACATGGCA
1 GTAAGACCATGCCAAGGCATGGCA
36547821 ATGGTAAGTT
Statistics
Matches: 105, Mismatches: 18, Indels: 19
0.74 0.13 0.13
Matches are distributed among these distances:
50 5 0.05
52 7 0.07
53 26 0.25
54 29 0.28
55 28 0.27
56 1 0.01
57 2 0.02
58 7 0.07
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (52 bp):
GTAAGACCATGCCAAGGCATGGCATTGATAAGACTACAAGTAAGGAAATCAT
Found at i:36547806 original size:53 final size:53
Alignment explanation
Indices: 36547623--36547830 Score: 195
Period size: 53 Copynumber: 3.9 Consensus size: 53
36547613 CATTAGGGTC
* * * * * *
36547623 TAAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGCTAAGTTTTACAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGG
* * * * * * * *
36547677 TAAGGAAATCATGTAAGACCATGTCAATACATGGCATTGATAAACTACAATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGG
* * *
36547732 CAA--ATATCCTATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGG
1 TAAGGATA-CC-ATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
*
36547785 TAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
36547831 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
53 43 0.35
54 41 0.34
55 38 0.31
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
Found at i:36550261 original size:43 final size:43
Alignment explanation
Indices: 36550200--36550416 Score: 346
Period size: 43 Copynumber: 5.1 Consensus size: 43
36550190 CACTATTCCG
* * *
36550200 AGGCCCGAATACATATCACCAGCACGAAGCCTGCTAGGCACGA
1 AGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGA
* *
36550243 AGGCCCGAATACATATCACCGGCACGAAGCCTGCTAGGCACGA
1 AGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGA
* *
36550286 AGGCCCAAATACACATCATCGACACGAAGCCTGCTAGGCACGA
1 AGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGA
*
36550329 AGGCCCGAATACACATCATTGGCACGAAGCCTGCTAGGCACGA
1 AGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGA
*
36550372 AGGCCCGAATACACATCATCGGCACGAAGCTTGCTAGGCAC-A
1 AGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGA
36550414 AGG
1 AGG
36550417 ACGTTATATG
Statistics
Matches: 164, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
42 4 0.02
43 160 0.98
ACGTcount: A:0.32, C:0.31, G:0.24, T:0.12
Consensus pattern (43 bp):
AGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGA
Found at i:36552337 original size:15 final size:15
Alignment explanation
Indices: 36552317--36552347 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
36552307 AATGAGGTAA
36552317 GTCATTGGTGAGTAT
1 GTCATTGGTGAGTAT
36552332 GTCATTGGTGAGTAT
1 GTCATTGGTGAGTAT
36552347 G
1 G
36552348 CACTTGAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.35, T:0.39
Consensus pattern (15 bp):
GTCATTGGTGAGTAT
Found at i:36556172 original size:68 final size:67
Alignment explanation
Indices: 36556118--36556335 Score: 257
Period size: 68 Copynumber: 3.2 Consensus size: 67
36556108 ATACTATATA
*
36556118 GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGATAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
36556183 AAT
65 AAT
*
36556186 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
*
36556251 GAT
65 AAT
* * * * *
36556254 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGA-CACCATGTAGACAAGAGAGCTAC---GAG
1 GTAGCTAGGTCACATGTGTGA-TAC-AG-GATGTATC-CCATGTAGACAAGAGAGCTACGGAGAG
36556315 ATAAAT
62 ATAAAT
* *
36556321 -TGGCTAGGTCGCATG
1 GTAGCTAGGTCACATG
36556336 AGTGGTACTA
Statistics
Matches: 135, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
66 14 0.10
67 8 0.06
68 84 0.62
69 2 0.01
70 2 0.01
71 25 0.19
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.23
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACAGGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:36563731 original size:68 final size:67
Alignment explanation
Indices: 36563685--36563842 Score: 271
Period size: 68 Copynumber: 2.3 Consensus size: 67
36563675 ATACTATATA
36563685 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
36563750 AAT
65 AAT
36563753 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
*
36563818 GAT
65 AAT
* *
36563821 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
36563843 TCCAAGTGAA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 87 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:36566303 original size:55 final size:53
Alignment explanation
Indices: 36566244--36566379 Score: 139
Period size: 55 Copynumber: 2.5 Consensus size: 53
36566234 GCAAGGAAAT
*
36566244 CATGTAAGACCATGTCAAGACATGGCATTAATAAACTACGATAAGGCAAAGATCC
1 CATGTAAGACCATGTCAAGACATGGCATTAAT-AACTAC-ATAAGGCAAAGATAC
* * * * ** * * * *
36566299 CATGTAAGCCCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCATTAATAACTACATAAGGCAAAGATAC
*
36566352 CACGT-AGACCATGTCAAGACATGGCATT
1 CATGTAAGACCATGTCAAGACATGGCATT
36566380 GGTATGTTTA
Statistics
Matches: 65, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
52 19 0.29
53 17 0.26
54 3 0.05
55 26 0.40
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCATTAATAACTACATAAGGCAAAGATAC
Found at i:36570749 original size:20 final size:19
Alignment explanation
Indices: 36570723--36570774 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
36570713 TTAATTCAGC
* *
36570723 AATTTTTTATTTTTATTTT
1 AATTTTTTATTTTCAATTT
*
36570742 AATATTTTTGTTTTCAATTT
1 AAT-TTTTTATTTTCAATTT
36570762 AATTTTTTCATTT
1 AATTTTTT-ATTT
36570775 GTTTGATTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (19 bp):
AATTTTTTATTTTCAATTT
Found at i:36573480 original size:6 final size:7
Alignment explanation
Indices: 36573464--36573489 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
36573454 AACTTGAGTG
36573464 TTTTTAT
1 TTTTTAT
36573471 TTTTTAT
1 TTTTTAT
36573478 TTTTTAT
1 TTTTTAT
36573485 TTTTT
1 TTTTT
36573490 TTAGTTTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:36576147 original size:49 final size:47
Alignment explanation
Indices: 36576028--36576389 Score: 165
Period size: 49 Copynumber: 7.7 Consensus size: 47
36576018 GGGACAAGAT
* *
36576028 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAGTACAT-TA--AA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTAACT--T-CATATATCAG
* * * * * * *
36576076 GTCAATGCCGTGTGCTATACAGGTCTTACGCTAACTTTCATATATCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAAC-TTCATATATC-AG
** *
36576125 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTTCATCTATCAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAAC-TTCATATATCAG
* * * * * * * *
36576173 TGTCAATGCCATGTCCTAGACAAGTCTTACACTGAC-ACACA-A-CAA
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTTCATATATCAG
* ** * *
36576218 GCTGACCCCATATCCCAGACAGGTCTTACACTAGCTT-ATATATCCTGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTTCATATAT-C--AG
* * * * *
36576267 GCCGATG-CATGTCCCAGACATGTCTTACACTAGC-TC-TCGTCTCAAT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTTCAT-ATATC-AG
** * ** **
36576313 GCCGATG-CATGTCCTGGACACGTCTTACACTGGCTCTCATA-ATGTG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAACT-TCATATATCAG
*
36576359 GCCGATG-CATGTCCCAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
36576390 GGCTCACATA
Statistics
Matches: 235, Mismatches: 62, Indels: 36
0.71 0.19 0.11
Matches are distributed among these distances:
44 27 0.11
45 6 0.03
46 63 0.27
47 19 0.08
48 47 0.20
49 73 0.31
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTTCATATATCAG
Found at i:36576292 original size:48 final size:46
Alignment explanation
Indices: 36576230--36576389 Score: 155
Period size: 46 Copynumber: 3.4 Consensus size: 46
36576220 TGACCCCATA
*
36576230 TCCCAGACAGGTCTTACACTAGCTTATATATCCTGAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTTATA-AT-CTGAGGCCGATGCATG
* ** * *
36576278 TCCCAGACATGTCTTACACTAGC-TCTCGTCTCAATGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTTATAATCT-GAGGCCGATGCATG
** * * *
36576324 TCCTGGACACGTCTTACACTGGCTCTCATAA--TGTGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCT-T-ATAATCTGAGGCCGATGCATG
36576370 TCCCAGACATGTCTTACACT
1 TCCCAGACATGTCTTACACT
36576390 GGCTCACATA
Statistics
Matches: 89, Mismatches: 19, Indels: 10
0.75 0.16 0.08
Matches are distributed among these distances:
45 2 0.02
46 60 0.67
47 3 0.03
48 23 0.26
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTAGCTTATAATCTGAGGCCGATGCATG
Found at i:36576363 original size:46 final size:44
Alignment explanation
Indices: 36576266--36576399 Score: 162
Period size: 46 Copynumber: 3.0 Consensus size: 44
36576256 TATATCCTGA
* *
36576266 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTC--AT-AAT
** *
36576313 -GCCGATGCATGTCCTGGACACGTCTTACACTGGCTCTCATAATGT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAA--T
*
36576358 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCACATA
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATA
36576400 CCACTTAATG
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 71 0.95
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.27
Consensus pattern (44 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAAT
Found at i:36577228 original size:31 final size:31
Alignment explanation
Indices: 36577192--36577256 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
36577182 AGAATGGCTG
36577192 AAAATTTCGGTGGAGGAGAAAGGAAAATGAA
1 AAAATTTCGGTGGAGGAGAAAGGAAAATGAA
36577223 AAAATTTCGGTGGAGGAGAAAGGAAAATGAA
1 AAAATTTCGGTGGAGGAGAAAGGAAAATGAA
36577254 AAA
1 AAA
36577257 GATGAAGGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.51, C:0.03, G:0.31, T:0.15
Consensus pattern (31 bp):
AAAATTTCGGTGGAGGAGAAAGGAAAATGAA
Found at i:36582527 original size:21 final size:20
Alignment explanation
Indices: 36582493--36582532 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
36582483 CTCTTAAAAT
*
36582493 AGAGCACACGCCCGTGTGCA
1 AGAGCACACACCCGTGTGCA
36582513 AGAGCAACACACCCGTGTGC
1 AGAGC-ACACACCCGTGTGC
36582533 CCTTGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.28, C:0.35, G:0.28, T:0.10
Consensus pattern (20 bp):
AGAGCACACACCCGTGTGCA
Found at i:36583327 original size:30 final size:30
Alignment explanation
Indices: 36583293--36583363 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
36583283 CACTAAAACA
36583293 AAATTAAAAGATCCTATACATGCCATA-TT
1 AAATTAAAAGATCCTATACATGCCATACTT
36583322 CAAATTAAAAGATCCTATACATGCCATACTT
1 -AAATTAAAAGATCCTATACATGCCATACTT
*
36583353 AAAATAAAAGA
1 AAATTAAAAGA
36583364 ACTAACTATA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 37 0.95
31 2 0.05
ACGTcount: A:0.49, C:0.17, G:0.07, T:0.27
Consensus pattern (30 bp):
AAATTAAAAGATCCTATACATGCCATACTT
Found at i:36583900 original size:49 final size:49
Alignment explanation
Indices: 36583829--36584140 Score: 134
Period size: 49 Copynumber: 6.6 Consensus size: 49
36583819 ACATTAAAGT
* * * * *
36583829 CGATGCCGTGTCTTATACAGGTCTTACGCTAACTTTCATATATCGAG-GC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATC-AGTGC
* ** * *
36583878 CGATGCCATGTCCTAGATAGGTCTTACACTGGCTCTCATCTATCAGTGT
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATCAGTGC
* * * * * *
36583927 CAATGCCATGTCCTAGACAAGTCTTACACTGA--CACACA-A-CA-AGC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATCAGTGC
* ** * * * *
36583971 TGACCCCATATCCGAGACAGGTCTTACACTAGCT-T-GTATATCCTGAG-GC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATAT-C--AGTGC
* * * * * *
36584020 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCTC--GTCTCAATGC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATCAGTGC
* * ** **
36584066 CGATG-CATGTCCTGGACATGTCTTACACTGGCTCTCATA-ATTTG-GC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATCAGTGC
* * *
36584112 CAATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCTAGACAGGTCTTACACT
36584141 GGTTCACATA
Statistics
Matches: 198, Mismatches: 51, Indels: 31
0.71 0.18 0.11
Matches are distributed among these distances:
44 25 0.13
45 4 0.02
46 64 0.32
47 6 0.03
48 29 0.15
49 70 0.35
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATCAGTGC
Found at i:36584118 original size:46 final size:46
Alignment explanation
Indices: 36584017--36584142 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 46
36584007 TATATCCTGA
* *
36584017 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCG-ATCAAT
**
36584064 -GCCGATGCATGTCCTGGACATGTCTTACACTGGCTCTC-AT-AATTT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGATCAA--T
*
36584109 GGCCAATGCATGTCCCAGACATGTCTTACACTGG
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGG
36584143 TTCACATACC
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 65 0.94
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGATCAAT
Found at i:36587552 original size:19 final size:20
Alignment explanation
Indices: 36587512--36587552 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
36587502 TGATATTATG
36587512 GTTTTGAGATTGAATGATAT
1 GTTTTGAGATTGAATGATAT
* *
36587532 GTTTTGATATTGGAT-ATAT
1 GTTTTGAGATTGAATGATAT
36587551 GT
1 GT
36587553 ATATTCGGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (20 bp):
GTTTTGAGATTGAATGATAT
Found at i:36592065 original size:19 final size:18
Alignment explanation
Indices: 36592041--36592085 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
36592031 TGATAAAAAT
36592041 AATATATGATGCAAT-TGAA
1 AATATATG-TG-AATATGAA
36592060 AATATATGTGAATATGAA
1 AATATATGTGAATATGAA
36592078 AAGTATAT
1 AA-TATAT
36592086 TCGGCCTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.12
18 8 0.33
19 13 0.54
ACGTcount: A:0.49, C:0.02, G:0.16, T:0.33
Consensus pattern (18 bp):
AATATATGTGAATATGAA
Found at i:36592179 original size:22 final size:22
Alignment explanation
Indices: 36592154--36592202 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
36592144 TGAATGCATA
36592154 AGTATAATTGCTTTTATATAAT
1 AGTATAATTGCTTTTATATAAT
36592176 AGTATAATTGCTTTTATATAAT
1 AGTATAATTGCTTTTATATAAT
36592198 AGTAT
1 AGTAT
36592203 GACTTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (22 bp):
AGTATAATTGCTTTTATATAAT
Found at i:36598364 original size:53 final size:54
Alignment explanation
Indices: 36598296--36598495 Score: 217
Period size: 53 Copynumber: 3.7 Consensus size: 54
36598286 TTTCCTTTTT
* * *
36598296 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGGATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATA
* * *
36598349 GAACTCACCAATGCCATGCCTTGGCATGGTCTTCCATGGGA-CCTTCGCCTTATA
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT-GCCTTATA
* *** *
36598403 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTATA
1 G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATA
* * * *
36598458 GAACTTATCAATGCCATG-CCTAAGCATGGTCTTACATG
1 GAACTCACCAATGCCATGTCTTGA-CATGGTCTTACATG
36598496 ATATCCTTAT
Statistics
Matches: 125, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
52 4 0.03
53 45 0.36
54 31 0.25
55 42 0.34
56 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (54 bp):
GAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATA
Found at i:36598487 original size:54 final size:53
Alignment explanation
Indices: 36598339--36598497 Score: 171
Period size: 55 Copynumber: 2.9 Consensus size: 53
36598329 ACGTGGGATC
* * * *
36598339 CTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTCCATGGGACCTT
1 CTTGCCTTATAGAACTCATCAATGCCATGCC-TAGCATGGTCTTACAT--GATCTT
* * *
36598394 C--GCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTT
1 CTTGCCTTATAG-AACTCATCAATGCCATGCCTAG-CATGGTCTTACATGATCTT
*
36598447 CTTGCCTTATAGAACTTATCAATGCCATGCCTAAGCATGGTCTTACATGAT
1 CTTGCCTTATAGAACTCATCAATGCCATGCCT-AGCATGGTCTTACATGAT
36598498 ATCCTTATCT
Statistics
Matches: 89, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
53 12 0.13
54 37 0.42
55 40 0.45
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (53 bp):
CTTGCCTTATAGAACTCATCAATGCCATGCCTAGCATGGTCTTACATGATCTT
Found at i:36598537 original size:47 final size:47
Alignment explanation
Indices: 36598482--36598603 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
36598472 CATGCCTAAG
* * *
36598482 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTTCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
36598529 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* *
36598576 CATGGTCTTGCATGGTATCATTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
36598604 GTGGCAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:36602622 original size:79 final size:81
Alignment explanation
Indices: 36602486--36602670 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
36602476 TTGAATGATG
*
36602486 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
36602550 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36602565 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36602627 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
36602645 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36602671 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:36602684 original size:40 final size:40
Alignment explanation
Indices: 36602487--36602670 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
36602477 TGAATGATGT
* * * *
36602487 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36602527 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36602567 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36602605 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36602646 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36602671 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36602692 original size:79 final size:79
Alignment explanation
Indices: 36602487--36602703 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
36602477 TGAATGATGT
** * * * **
36602487 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
36602550 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
36602567 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
36602632 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
36602646 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
36602704 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:36604895 original size:27 final size:27
Alignment explanation
Indices: 36604835--36604983 Score: 90
Period size: 27 Copynumber: 5.5 Consensus size: 27
36604825 ATATCCTCAG
*
36604835 TTGTAAAATTACCAAAGTACCGTCGGT
1 TTGTAAAATTACCAAAGTACCGTCGAT
* * *
36604862 TTATAAAATTACCCAAA-TATCTTCGAT
1 TTGTAAAATTA-CCAAAGTACCGTCGAT
* *
36604889 TTGTAAAATTATCGAAA-TACCCTC-AGT
1 TTGTAAAATTA-CCAAAGTACCGTCGA-T
* ** * *
36604916 TTGCAAAATTATTGAAA-TACCCTCGAC
1 TTGTAAAATTA-CCAAAGTACCGTCGAT
* * *
36604943 ATGTAAAATTATCAAAGTACCCTCGAT
1 TTGTAAAATTACCAAAGTACCGTCGAT
**
36604970 TTACAAAATTACCA
1 TTGTAAAATTACCA
36604984 TTTTACCCTT
Statistics
Matches: 98, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 5 0.05
27 87 0.89
28 6 0.06
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAGTACCGTCGAT
Found at i:36604924 original size:54 final size:53
Alignment explanation
Indices: 36604835--36604982 Score: 154
Period size: 54 Copynumber: 2.7 Consensus size: 53
36604825 ATATCCTCAG
* * * * * *
36604835 TTGTAAAATTACCAAAGTACCGTCGGTTTATAAAATTACCCAAATATCTTCGAT
1 TTGTAAAATTATCAAAGTACCCTC-GTTTACAAAATTACCCAAATACCCTCGAC
* ***
36604889 TTGTAAAATTATCGAAA-TACCCTCAGTTTGCAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTATC-AAAGTACCCTC-GTTTACAAAATTACCCAAATACCCTCGAC
*
36604943 ATGTAAAATTATCAAAGTACCCTCGATTTACAAAATTACC
1 TTGTAAAATTATCAAAGTACCCTCG-TTTACAAAATTACC
36604983 ATTTTACCCT
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
53 4 0.05
54 69 0.91
55 3 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (53 bp):
TTGTAAAATTATCAAAGTACCCTCGTTTACAAAATTACCCAAATACCCTCGAC
Found at i:36604990 original size:27 final size:27
Alignment explanation
Indices: 36604960--36605196 Score: 296
Period size: 27 Copynumber: 8.8 Consensus size: 27
36604950 ATTATCAAAG
*
36604960 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
36604987 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
36605014 TACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
36605041 TACCCTTGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
36605068 TACCCTCGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAGAATTACCATTT
* * *
36605095 TACCCTCGATTTATAGAATTACCGTTC
1 TACCCTCGATTTACAGAATTACCATTT
* *
36605122 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
36605149 TACCCTCGATTTAGAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
36605176 TACCCTCGATTTAGA-AATTAC
1 TACCCTCGATTTACAGAATTAC
36605197 TAAAACACCC
Statistics
Matches: 187, Mismatches: 23, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
26 6 0.03
27 181 0.97
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:36605206 original size:26 final size:26
Alignment explanation
Indices: 36605149--36605334 Score: 90
Period size: 27 Copynumber: 6.8 Consensus size: 26
36605139 ATTACCATTT
* ***
36605149 TACCCTCGATTTAGAGAATTACCATTT
1 TACCCTCGATTTAGA-AATTACTAAAA
36605176 TACCCTCGATTTAGAAATTACTAAAA
1 TACCCTCGATTTAGAAATTACTAAAA
* * *
36605202 CACCCCTGGTTTGTA-AAATTACTAAAA
1 TA-CCCTCGATT-TAGAAATTACTAAAA
* * *
36605229 TACCCCCTAATTT-GTAAAATTACTGAAA
1 TACCCTC-GATTTAG--AAATTACTAAAA
* * *
36605257 TACCCTCGA-CTAGTGAAAATTACCAAAG
1 TACCCTCGATTTA--G-AAATTACTAAAA
* ***
36605285 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTAGA-AATTACTAAAA
*
36605312 TACCCTCGATTTACAGAATTACT
1 TACCCTCGATTTAGA-AATTACT
36605335 GTTTTACCCT
Statistics
Matches: 122, Mismatches: 26, Indels: 22
0.72 0.15 0.13
Matches are distributed among these distances:
26 14 0.11
27 67 0.55
28 38 0.31
29 3 0.02
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (26 bp):
TACCCTCGATTTAGAAATTACTAAAA
Found at i:36605244 original size:28 final size:28
Alignment explanation
Indices: 36605190--36605261 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
36605180 CTCGATTTAG
* **
36605190 AAATTACTAAAACA-CCCCTGGTTTGTA
1 AAATTACTAAAATACCCCCTAATTTGTA
36605217 AAATTACTAAAATACCCCCTAATTTGTA
1 AAATTACTAAAATACCCCCTAATTTGTA
*
36605245 AAATTACTGAAATACCC
1 AAATTACTAAAATACCC
36605262 TCGACTAGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 13 0.32
28 27 0.68
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (28 bp):
AAATTACTAAAATACCCCCTAATTTGTA
Found at i:36605315 original size:27 final size:27
Alignment explanation
Indices: 36605285--36605376 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
36605275 ATTACCAAAG
* *
36605285 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
36605312 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
36605339 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
36605366 TACCCTCGATT
1 TACCCTCGATT
36605377 GTGAAATTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:36605370 original size:81 final size:81
Alignment explanation
Indices: 36604960--36605376 Score: 345
Period size: 81 Copynumber: 5.1 Consensus size: 81
36604950 ATTATCAAAG
* * *
36604960 TACCCTCGATTTACAAAATTACCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* * *
36605025 TACAGAGTTACTATTT
66 TACAAAATTACCATTT
* * * * *
36605041 TACCCTTGAATTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTCTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* * * *
36605106 TATAGAATTACCGTTC
66 TACAAAATTACCATTT
* * * * **
36605122 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTAGAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
* * ***
36605187 TA-GAAATTACTAAAA
66 TACAAAATTACCATTT
* * * *** * * ** * ***
36605202 CACCC-CTGGTTTGTAAAATTACTAAAATACCCCCTAATTTGTAAAATTACTGAAATACCCTCGA
1 TACCCTC-GATTTATAAAATTACTATTTTACCCTC-GATTTACAGAATTACTGTTTTACCCTCGA
* * ***
36605266 -CTAGTGAAAATTACCAAAG
64 TTTA--CAAAATTACCATTT
* *
36605285 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
*
36605350 TACAAAATTACCGTTT
66 TACAAAATTACCATTT
36605366 TACCCTCGATT
1 TACCCTCGATT
36605377 GTGAAATTAC
Statistics
Matches: 257, Mismatches: 72, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
79 1 0.00
80 30 0.12
81 168 0.65
82 21 0.08
83 36 0.14
84 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
TACAAAATTACCATTT
Found at i:36605414 original size:27 final size:27
Alignment explanation
Indices: 36605381--36605718 Score: 394
Period size: 27 Copynumber: 12.6 Consensus size: 27
36605371 TCGATTGTGA
*
36605381 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * ** *
36605408 AATTACCAAAACACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCTA-TAGGGTAG
** * *
36605435 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
** *
36605462 AATTACTAAAATA-CCCTAGTAAGGTAG
1 AATTACCGAAATACCCCTA-TAGGGTAG
* *
36605489 AATTACCG-AATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
36605515 AATTACTGAAATACCCCTGTGGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
36605542 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
36605569 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
36605596 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
36605623 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
36605650 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
** * *
36605677 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTATAGGGTAG
*
36605704 AATTACCGAGATACC
1 AATTACCGAAATACC
36605719 TTGTGGGGTA
Statistics
Matches: 266, Mismatches: 40, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
26 22 0.08
27 243 0.91
28 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:36606070 original size:67 final size:67
Alignment explanation
Indices: 36605962--36606115 Score: 281
Period size: 67 Copynumber: 2.3 Consensus size: 67
36605952 GAGGAAGCGT
*
36605962 TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATTTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
36606027 TA
66 TA
* *
36606029 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTTTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
36606094 TA
66 TA
36606096 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
36606116 TTCTGTGGTG
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 84 1.00
ACGTcount: A:0.18, C:0.28, G:0.22, T:0.32
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:36606227 original size:6 final size:6
Alignment explanation
Indices: 36606218--36606339 Score: 88
Period size: 6 Copynumber: 19.8 Consensus size: 6
36606208 TTGCATTCAC
* *
36606218 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * * * * * *
36606268 ATTCTG GTTATG GTTTTG ATTTTG ATTCTG -TCACCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
36606317 ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
36606340 AGTTATGATA
Statistics
Matches: 94, Mismatches: 13, Indels: 18
0.75 0.10 0.14
Matches are distributed among these distances:
5 5 0.05
6 77 0.82
7 8 0.09
8 4 0.04
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:36606246 original size:25 final size:25
Alignment explanation
Indices: 36606218--36606273 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
36606208 TTGCATTCAC
*
36606218 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTTACCTAATACTG
*
36606243 ATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGTTACCTAATACTG
36606268 ATTCTG
1 ATTCTG
36606274 GTTATGGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGTTACCTAATACTG
Found at i:36606296 original size:43 final size:43
Alignment explanation
Indices: 36606218--36606344 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 43
36606208 TTGCATTCAC
*
36606218 ATTCTGATTCTG-TTACCTGATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTA--TGATTCTGATTCTGATTCTGTTACCTA
* * * * * *
36606262 ATTCTGATTCTGGTTATGGTTTTGATTTTGATTCTGTCACCTG
1 ATTCTGATTCTGATTATGATTCTGATTCTGATTCTGTTACCTA
* *
36606305 ATTTTGATTCTGATTCTGATTCTGATTCTGATTCTAGTTA
1 ATTCTGATTCTGATTATGATTCTGATTCTGATTCT-GTTA
36606345 TGATAATGTT
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 50 0.74
44 15 0.22
45 3 0.04
ACGTcount: A:0.18, C:0.16, G:0.17, T:0.50
Consensus pattern (43 bp):
ATTCTGATTCTGATTATGATTCTGATTCTGATTCTGTTACCTA
Found at i:36608009 original size:27 final size:27
Alignment explanation
Indices: 36607979--36608066 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
36607969 CAAAACCGTC
*
36607979 ATTTTACCCTACAAGGGTATTTTAGTA
1 ATTTTACCCTACAAGGGTATTTTGGTA
* * *
36608006 ATTTTACACTACAAGAGTATTTCGGTA
1 ATTTTACCCTACAAGGGTATTTTGGTA
** *
36608033 ATTTTA-CAAACTGAGGGTATTTTGGTA
1 ATTTTACCCTAC-AAGGGTATTTTGGTA
36608060 ATTTTAC
1 ATTTTAC
36608067 AAATTGGGGG
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.04
27 47 0.96
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGTATTTTGGTA
Found at i:36608038 original size:54 final size:54
Alignment explanation
Indices: 36607979--36608242 Score: 171
Period size: 54 Copynumber: 4.9 Consensus size: 54
36607969 CAAAACCGTC
* * * *
36607979 ATTTTACCCTACAAGGGTATTTTAGTAATTTTACACTA-CAAGAGTATTTCGGTA
1 ATTTTACCATACAAGGGTATTTTAGTAATTTTACA-AACCAGGGGTATTTCGGTA
* * * *** *
36608033 ATTTTA-CAAACTGAGGGTATTTTGGTAATTTTACAAATTGGGGGTCTTTCGGTA
1 ATTTTACCATAC-AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTCGGTA
* * * *
36608087 ATTTTACAATGCAAGGGTATTTTAGAAATTTTACAAACCAGGGGTATTTCGATA
1 ATTTTACCATACAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTCGGTA
* * * * **
36608141 ATTTTACAAT-CTGAA-GGAATTTCAGAAATTTTACAAACTGGGGGTATTTTC-GTA
1 ATTTTACCATAC--AAGGGTATTTTAGTAATTTTACAAACCAGGGGTA-TTTCGGTA
* * *** ** **
36608195 ATATTA-CAAATTGGGGTATTTCGGTAATTTTACAAATTAGGGGTATTT
1 ATTTTACCATACAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
36608243 TGGTGTAATA
Statistics
Matches: 165, Mismatches: 37, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
52 3 0.02
53 32 0.19
54 122 0.74
55 8 0.05
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (54 bp):
ATTTTACCATACAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTCGGTA
Found at i:36608067 original size:27 final size:27
Alignment explanation
Indices: 36608022--36608230 Score: 194
Period size: 27 Copynumber: 7.8 Consensus size: 27
36608012 CACTACAAGA
36608022 GTATTTCGGTAATTTTACAAACTGAGG
1 GTATTTCGGTAATTTTACAAACTGAGG
* * *
36608049 GTATTTTGGTAATTTTACAAATTGGGG
1 GTATTTCGGTAATTTTACAAACTGAGG
*
36608076 GTCTTTCGGTAATTTTAC-AA-TGCAAGG
1 GTATTTCGGTAATTTTACAAACTG--AGG
** * *
36608103 GTATTTTAGAAATTTTACAAAC-CAGGG
1 GTATTTCGGTAATTTTACAAACTGA-GG
* * *
36608130 GTATTTCGATAATTTTACAATCTGAAG
1 GTATTTCGGTAATTTTACAAACTGAGG
* * * *
36608157 GAATTTCAGAAATTTTACAAACTGGGG
1 GTATTTCGGTAATTTTACAAACTGAGG
* *
36608184 GTATTTTC-GTAATATTACAAATTG-GG
1 GTA-TTTCGGTAATTTTACAAACTGAGG
36608210 GTATTTCGGTAATTTTACAAA
1 GTATTTCGGTAATTTTACAAA
36608231 TTAGGGGTAT
Statistics
Matches: 144, Mismatches: 30, Indels: 17
0.75 0.16 0.09
Matches are distributed among these distances:
25 6 0.04
26 20 0.14
27 111 0.77
28 7 0.05
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
GTATTTCGGTAATTTTACAAACTGAGG
Found at i:36608117 original size:81 final size:81
Alignment explanation
Indices: 36607993--36608242 Score: 240
Period size: 81 Copynumber: 3.1 Consensus size: 81
36607983 TACCCTACAA
* * * * ** *
36607993 GGGTATTTTAGTAATTTTACACTACAAGAGTATTTCGGTAATTTTACAAACTGAGGGTATTTTGG
1 GGGTATTTCAGTAATTTTACAATGCAAGGGTATTTTAGTAATTTTACAAACTGAGGGTATTTCGG
36608058 TAATTTTACAAATTGG
66 TAATTTTACAAATTGG
* * * *
36608074 GGGTCTTTCGGTAATTTTACAATGCAAGGGTATTTTAGAAATTTTACAAAC-CAGGGGTATTTCG
1 GGGTATTTCAGTAATTTTACAATGCAAGGGTATTTTAGTAATTTTACAAACTGA-GGGTATTTCG
* *
36608138 ATAATTTTAC-AATCTGA
65 GTAATTTTACAAAT-TGG
* * * * * * *
36608155 AGGAATTTCAGAAATTTTACAAACTG--GGGGTATTTTCGTAATATTACAAATTG-GGGTATTTC
1 GGGTATTTCAGTAATTTTAC-AA-TGCAAGGGTATTTTAGTAATTTTACAAACTGAGGGTATTTC
*
36608217 GGTAATTTTACAAATTAG
64 GGTAATTTTACAAATTGG
36608235 GGGTATTT
1 GGGTATTT
36608243 TGGTGTAATA
Statistics
Matches: 134, Mismatches: 29, Indels: 13
0.76 0.16 0.07
Matches are distributed among these distances:
80 30 0.22
81 100 0.75
82 2 0.01
83 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAATGCAAGGGTATTTTAGTAATTTTACAAACTGAGGGTATTTCGG
TAATTTTACAAATTGG
Found at i:36609764 original size:28 final size:28
Alignment explanation
Indices: 36609724--36609805 Score: 119
Period size: 28 Copynumber: 2.9 Consensus size: 28
36609714 GCAATCAAAT
*
36609724 ATGGCACTCAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAGATATTGAGA
*
36609752 ATGGCACTTAGTGTGCAAGATATTGAGA
1 ATGGCACTTAGTGTGCGAGATATTGAGA
* * *
36609780 ATGACACTTAGAGTGCGAAATATTGA
1 ATGGCACTTAGTGTGCGAGATATTGA
36609806 ATGATTCAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAGATATTGAGA
Found at i:36610241 original size:21 final size:22
Alignment explanation
Indices: 36610212--36610252 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
36610202 GAACGTATTG
36610212 TGATGTATGTGAAAATGAAATA
1 TGATGTATGTGAAAATGAAATA
**
36610234 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGAAAATGAAA
36610253 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGAAAATGAAATA
Found at i:36616380 original size:28 final size:28
Alignment explanation
Indices: 36616340--36616418 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
36616330 GCAATCAAAT
* *
36616340 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
36616368 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
**
36616396 ATGATACTTAGTGTGCGAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
36616419 CGAATGATTC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:36618543 original size:27 final size:26
Alignment explanation
Indices: 36618464--36618588 Score: 105
Period size: 27 Copynumber: 4.7 Consensus size: 26
36618454 GGGGTGTTAC
*
36618464 ATTT-GATAATTTTACAAACTG-GGAG-
1 ATTTCGATAATTTTACAATC-GAGG-GT
* * *
36618489 ATTTCGACAATTTTTCAATCAGATGGT
1 ATTTCGATAATTTTACAATC-GAGGGT
*
36618516 ATTTCGATAATTTTACAATCTTAGGGT
1 ATTTCGATAATTTTACAATC-GAGGGT
*
36618543 ATTTCGGTAATTTTACTAATCGAGGGT
1 ATTTCGATAATTTTAC-AATCGAGGGT
*
36618570 ATTT-TAGTAATTTTACAAT
1 ATTTCGA-TAATTTTACAAT
36618589 AAAATAGTAT
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
25 4 0.05
26 17 0.21
27 56 0.69
28 4 0.05
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.42
Consensus pattern (26 bp):
ATTTCGATAATTTTACAATCGAGGGT
Found at i:36621416 original size:28 final size:28
Alignment explanation
Indices: 36621384--36621437 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
36621374 GCAGCAGCAT
* *
36621384 AGTGTGGGCCTTAGCCCAATATAGTAAC
1 AGTGTGGGCCTAAGCCCAATACAGTAAC
36621412 AGTGTGGGCCTAAGCCCAATACAGTA
1 AGTGTGGGCCTAAGCCCAATACAGTA
36621438 TCAGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (28 bp):
AGTGTGGGCCTAAGCCCAATACAGTAAC
Found at i:36621761 original size:27 final size:27
Alignment explanation
Indices: 36621731--36621804 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 27
36621721 ACATGATTAG
*
36621731 CACATAGCCATCGGTAAATATGGTC-GA
1 CACATAGCCATCGGTAAATAT-GACAGA
* * ** *
36621758 CACAGAGTCATCAATAAATATGACAGG
1 CACATAGCCATCGGTAAATATGACAGA
*
36621785 CACATAGCCATAGGTAAATA
1 CACATAGCCATCGGTAAATA
36621805 CGATTATCAC
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (27 bp):
CACATAGCCATCGGTAAATATGACAGA
Found at i:36622163 original size:33 final size:34
Alignment explanation
Indices: 36622126--36622190 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
36622116 ATCAGTTTTA
* *
36622126 CAACCACAGTTAAGTCAGTTAAA-ACATAGTCAT
1 CAACCACAGTCAAATCAGTTAAATACATAGTCAT
*
36622159 CAACCACAGTCAAATCAGTTAAATTCATAGTC
1 CAACCACAGTCAAATCAGTTAAATACATAGTC
36622191 TAAGTCGGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 21 0.75
34 7 0.25
ACGTcount: A:0.42, C:0.23, G:0.11, T:0.25
Consensus pattern (34 bp):
CAACCACAGTCAAATCAGTTAAATACATAGTCAT
Found at i:36622264 original size:27 final size:27
Alignment explanation
Indices: 36622238--36622455 Score: 226
Period size: 27 Copynumber: 8.1 Consensus size: 27
36622228 TTTACCCTAC
*
36622238 AGGGGTATTTCGGTAATTTTACACTAC-
1 AGGGGTATTTCGGTAATTTTACA-AACT
** *
36622265 AAAGGTATATCGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACAAACT
* *
36622292 AGGGGTATTTTGGTAATTTTATAAACT
1 AGGGGTATTTCGGTAATTTTACAAACT
* *
36622319 AGGGGTATTTTGGTAATTTTACAATCT
1 AGGGGTATTTCGGTAATTTTACAAACT
* ***
36622346 -GAGGGTTTTTCAAAAATTTTACAAACT
1 AG-GGGTATTTCGGTAATTTTACAAACT
*
36622373 AGAGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACAAACT
* **
36622400 GGGGGTATTTTAGTAATTTTACAAA-T
1 AGGGGTATTTCGGTAATTTTACAAACT
* *
36622426 CGAGAGTATTTCGGTAATTTTACAAACT
1 AG-GGGTATTTCGGTAATTTTACAAACT
36622454 AG
1 AG
36622456 AGATATGTTT
Statistics
Matches: 155, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
26 5 0.03
27 147 0.95
28 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTTACAAACT
Found at i:36622364 original size:81 final size:81
Alignment explanation
Indices: 36622279--36622457 Score: 252
Period size: 81 Copynumber: 2.2 Consensus size: 81
36622269 GTATATCGGT
* * * *
36622279 AATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTAC-AA
1 AATTTTACAAACTAGAGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAA
* *
36622343 TCTGAGGGTTTTTCAAA
66 TC-GAGAGTATTTCAAA
*
36622360 AATTTTACAAACTAGAGGTATTTCGGTAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAAA
1 AATTTTACAAACTAGAGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAA
***
36622425 TCGAGAGTATTTCGGT
66 TCGAGAGTATTTCAAA
36622441 AATTTTACAAACTAGAG
1 AATTTTACAAACTAGAG
36622458 ATATGTTTAT
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 83 0.95
82 4 0.05
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (81 bp):
AATTTTACAAACTAGAGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAA
TCGAGAGTATTTCAAA
Found at i:36624945 original size:16 final size:17
Alignment explanation
Indices: 36624924--36624958 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
36624914 GCTTTGGAGA
36624924 GTCACA-CGCCCGTGTG
1 GTCACACCGCCCGTGTG
36624940 GTCACACCCGCCCGTGTG
1 GTCACA-CCGCCCGTGTG
36624958 G
1 G
36624959 CTTGGGACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
18 11 0.65
ACGTcount: A:0.11, C:0.40, G:0.31, T:0.17
Consensus pattern (17 bp):
GTCACACCGCCCGTGTG
Found at i:36628913 original size:14 final size:15
Alignment explanation
Indices: 36628885--36628913 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36628875 CTCTTTCAAG
36628885 GACAAGAATAATCCA
1 GACAAGAATAATCCA
36628900 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
36628914 TATGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:36629580 original size:15 final size:15
Alignment explanation
Indices: 36629540--36629577 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
36629530 GAAGCCTAGA
36629540 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
36629555 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
36629570 AT-AAGAAA
1 ATAAAGAAA
36629578 ATCAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.61, C:0.11, G:0.13, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:36631427 original size:16 final size:17
Alignment explanation
Indices: 36631406--36631440 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
36631396 GCTTTGGAGA
36631406 GTCACA-CGCCCGTGTG
1 GTCACACCGCCCGTGTG
36631422 GTCACACCCGCCCGTGTG
1 GTCACA-CCGCCCGTGTG
36631440 G
1 G
36631441 CTTGGGACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
18 11 0.65
ACGTcount: A:0.11, C:0.40, G:0.31, T:0.17
Consensus pattern (17 bp):
GTCACACCGCCCGTGTG
Found at i:36648306 original size:51 final size:52
Alignment explanation
Indices: 36648245--36648345 Score: 134
Period size: 52 Copynumber: 2.0 Consensus size: 52
36648235 CCTTTTCCCT
* * *
36648245 AAAAGCCGAAAACCCTT-TTGTT-TTCTTTATTTTCTTTCTGTCGATTTCTCC
1 AAAAGCCGAAAACCCTTGTTCTTCTT-TTTATTTTCCTTCTGCCGATTTCTCC
* *
36648296 AAAAGTCGAAAACCCTTGTTCTTCTTTTTATTTTCCTTGTGCCGATTTCT
1 AAAAGCCGAAAACCCTTGTTCTTCTTTTTATTTTCCTTCTGCCGATTTCT
36648346 TTGTTTCACT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 16 0.37
52 25 0.58
53 2 0.05
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.47
Consensus pattern (52 bp):
AAAAGCCGAAAACCCTTGTTCTTCTTTTTATTTTCCTTCTGCCGATTTCTCC
Found at i:36649233 original size:29 final size:28
Alignment explanation
Indices: 36649177--36649238 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 28
36649167 TGAATGTAAC
* *
36649177 TGGGCCTAATGGGCCATATAAATGTGATT
1 TGGGCCTAATGGACCATATAAATATGA-T
* *
36649206 TGGGCCTAATGGACCATATGACTATGAT
1 TGGGCCTAATGGACCATATAAATATGAT
36649234 TGGGC
1 TGGGC
36649239 TTAAAGGGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (28 bp):
TGGGCCTAATGGACCATATAAATATGAT
Found at i:36655119 original size:50 final size:50
Alignment explanation
Indices: 36655060--36655159 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
36655050 AGGATAACTC
36655060 CCTCCTACATAATAGGAGTAATATCTTAGGCCACTTGATTGAGTGAGACT
1 CCTCCTACATAATAGGAGTAATATCTTAGGCCACTTGATTGAGTGAGACT
36655110 CCTCCTACATAATAGGAGTAATATCTTAGGCCACTTGATTGAGTGAGACT
1 CCTCCTACATAATAGGAGTAATATCTTAGGCCACTTGATTGAGTGAGACT
36655160 AGAAATACAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (50 bp):
CCTCCTACATAATAGGAGTAATATCTTAGGCCACTTGATTGAGTGAGACT
Found at i:36658479 original size:21 final size:19
Alignment explanation
Indices: 36658454--36658503 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
36658444 AATATAGACT
36658454 TATATTCTAAAATTTAAAATA
1 TATATT-TAAAA-TTAAAATA
* *
36658475 TATATTTTAAATTAGAATA
1 TATATTTAAAATTAAAATA
*
36658494 TATATATAAA
1 TATATTTAAA
36658504 TAAAGATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 15 0.60
20 4 0.16
21 6 0.24
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
TATATTTAAAATTAAAATA
Found at i:36659299 original size:101 final size:102
Alignment explanation
Indices: 36659194--36659382 Score: 344
Period size: 105 Copynumber: 1.8 Consensus size: 102
36659184 AATTATCATA
36659194 ATTTAAATATGTATTGAAAAATC-TTTATATATATATTCTAATTTAAAATATATATTTTAAAATT
1 ATTTAAATATGTATTGAAAAATCTTTTATATATATATTCTAATTTAAAATATATATTTTAAAATT
36659258 TCAAAATTCATAAATGTTACATTTAAACTAGTCTTAC
66 TCAAAATTCATAAATGTTACATTTAAACTAGTCTTAC
36659295 ATTTAAATATGTATTGAAAAATCTTTATTTATATATATATTCTAATTTAAAATATATATTTTAAA
1 ATTTAAATATGTATTGAAAAATC--T-TTTATATATATATTCTAATTTAAAATATATATTTTAAA
36659360 ATTTCAAAATTCATAAATGTTAC
63 ATTTCAAAATTCATAAATGTTAC
36659383 TGTAATGCCC
Statistics
Matches: 84, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
101 23 0.27
105 61 0.73
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.46
Consensus pattern (102 bp):
ATTTAAATATGTATTGAAAAATCTTTTATATATATATTCTAATTTAAAATATATATTTTAAAATT
TCAAAATTCATAAATGTTACATTTAAACTAGTCTTAC
Found at i:36660233 original size:54 final size:54
Alignment explanation
Indices: 36660149--36660286 Score: 188
Period size: 54 Copynumber: 2.6 Consensus size: 54
36660139 TAGATAAGTT
* * * *
36660149 ATAGAATTACCGAAATACCCCTGTAAGGTAGA-ATTACTGAAATACCCCTGTAGG
1 ATAGAATTACCGAAATACCCTTGTAGGGTAGATA-TACCGAAATACCCCTATAGG
36660203 ATAGAATTACCGAAATACCCTTGTAGGGTAGATATACCGAAATACCCCTATAGG
1 ATAGAATTACCGAAATACCCTTGTAGGGTAGATATACCGAAATACCCCTATAGG
* * * *
36660257 GTAAAATTACCGAGATACCCTTGTGGGGTA
1 ATAGAATTACCGAAATACCCTTGTAGGGTA
36660287 AAAATTACCA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
54 74 0.99
55 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (54 bp):
ATAGAATTACCGAAATACCCTTGTAGGGTAGATATACCGAAATACCCCTATAGG
Found at i:36660285 original size:27 final size:27
Alignment explanation
Indices: 36660153--36660295 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
36660143 TAAGTTATAG
* *
36660153 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAA
* * *
36660180 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAA
*
36660207 AATTACCGAAATACCCTTGTAGGGT-A
1 AATTACCGAAATACCCCTGTAGGGTAA
* *
36660233 GATATACCGAAATACCCCTATAGGGTAA
1 AAT-TACCGAAATACCCCTGTAGGGTAA
* * *
36660261 AATTACCGAGATACCCTTGTGGGGTAAA
1 AATTACCGAAATACCCCTGTAGGGT-AA
36660289 AATTACC
1 AATTACC
36660296 ATTTTGCCCC
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.02
27 84 0.86
28 12 0.12
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAA
Found at i:36660991 original size:27 final size:26
Alignment explanation
Indices: 36660947--36660998 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36660937 CTCGCTGCAA
*
36660947 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
36660974 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
36660999 GCATCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:36662503 original size:55 final size:54
Alignment explanation
Indices: 36662331--36662554 Score: 227
Period size: 53 Copynumber: 4.2 Consensus size: 54
36662321 AGGATACACG
* * * *
36662331 GGTA-CCTTTCCTTTTAAAACTTACCATTGCCATGTCTTGACATGGTCTTACAT
1 GGTATCCTTGCCTTATAGAACTTACCAATGCCATGTCTTGACATGGTCTTACAT
* * * * * *
36662384 GGTATCCTTACTTTAT-GAACTCACCATTGCCACGTCTTGGCATGGTCTTACAT
1 GGTATCCTTGCCTTATAGAACTTACCAATGCCATGTCTTGACATGGTCTTACAT
* * ** *
36662437 GGGATCTTTGCCTTATAGTAGTTTATCAATGCCATGTCTTGACATGGTCTTACAT
1 GGTATCCTTGCCTTATAG-AACTTACCAATGCCATGTCTTGACATGGTCTTACAT
* * * * * * *
36662492 GATTTCCTTGCCTTGTAAAACTTACCAATGCCATGCCTTGGCATGGTCTTACTT
1 GGTATCCTTGCCTTATAGAACTTACCAATGCCATGTCTTGACATGGTCTTACAT
36662546 GGTATCCTT
1 GGTATCCTT
36662555 AAACCCTAAT
Statistics
Matches: 136, Mismatches: 32, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
53 49 0.36
54 46 0.34
55 41 0.30
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
GGTATCCTTGCCTTATAGAACTTACCAATGCCATGTCTTGACATGGTCTTACAT
Found at i:36673466 original size:27 final size:27
Alignment explanation
Indices: 36673442--36673518 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
36673432 AATACCCTGG
*
36673442 TTTGTAAAATTACTAAAATACCCCTTA
1 TTTGTAAAATTACTAAAATACCCCTAA
*
36673469 TTTGTAAAATTACCAAAATACCCCTAA
1 TTTGTAAAATTACTAAAATACCCCTAA
* *
36673496 TTTGTGAAATTACTGAAATACCC
1 TTTGTAAAATTACTAAAATACCC
36673519 TCGACCTGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.34
Consensus pattern (27 bp):
TTTGTAAAATTACTAAAATACCCCTAA
Found at i:36673641 original size:27 final size:27
Alignment explanation
Indices: 36673611--36673750 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 27
36673601 CAATTTACAA
36673611 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
36673638 AATTACCG-AATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
36673664 AATTACTAAAATACCCTTGTATGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
36673691 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
36673718 AATTACCGAGAA-ACCCTTGTGGGGTAA
1 AATTACTGA-AATACCCTTGTAGGGTAG
36673745 AATTAC
1 AATTAC
36673751 CATTTTGCCC
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 22 0.23
27 70 0.74
28 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:36673734 original size:54 final size:53
Alignment explanation
Indices: 36673611--36673747 Score: 163
Period size: 53 Copynumber: 2.6 Consensus size: 53
36673601 CAATTTACAA
*
36673611 AATTACTG-AAATACCCTTGTAGGGTAGAATTACCGAATACCCCTATAGGGTAG
1 AATTAC-GAAAATACCCTTGTAGGGTAGAAATACCGAATACCCCTATAGGGTAG
* * * *
36673664 AATTACTAAAATACCCTTGTATGGTAGAAATACTGAAATACCCCTGTAGGGTAG
1 AATTACGAAAATACCCTTGTAGGGTAGAAATACCG-AATACCCCTATAGGGTAG
* *
36673718 AATTACCGAGAA-ACCCTTGTGGGGTA-AAAT
1 AATTA-CGAAAATACCCTTGTAGGGTAGAAAT
36673748 TACCATTTTG
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
53 34 0.47
54 34 0.47
55 4 0.06
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (53 bp):
AATTACGAAAATACCCTTGTAGGGTAGAAATACCGAATACCCCTATAGGGTAG
Found at i:36674031 original size:24 final size:25
Alignment explanation
Indices: 36673955--36674017 Score: 92
Period size: 25 Copynumber: 2.5 Consensus size: 25
36673945 AGGAAGTGCT
*
36673955 AAAAGGGCTTTGCCCCAGTTTA-CTG
1 AAAAGGGCTTTGCCCCAGTTTATC-A
36673980 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
36674005 AAAAGGTCTTTGC
1 AAAAGGGCTTTGC
36674018 TCTAGTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 34 0.97
26 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:36680407 original size:47 final size:47
Alignment explanation
Indices: 36680353--36680669 Score: 447
Period size: 47 Copynumber: 6.7 Consensus size: 47
36680343 TTAGGATTCT
* * * * *
36680353 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTACTAGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
36680400 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
36680447 GTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
36680494 GTGTGATGAATGTGAAAGTATATATATGTCATAAGGCCTAAGGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
36680541 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
36680588 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
36680635 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36680670 TCCTGAAGGG
Statistics
Matches: 245, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 244 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:36680844 original size:37 final size:37
Alignment explanation
Indices: 36680788--36680866 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36680778 CCGAGCTCTA
* * *
36680788 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
36680825 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36680862 AAGAC
1 AAGAC
36680867 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36682407 original size:158 final size:159
Alignment explanation
Indices: 36682078--36682427 Score: 549
Period size: 158 Copynumber: 2.2 Consensus size: 159
36682068 GAGAATTGAG
*
36682078 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTTCC-AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
36682143 AGGAGCATTCGTACTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
65 AGGAGCATTCGTACTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
** * *
36682208 CCGAGCTAAGTCCCGAGGAGCATTCGTGCT
130 CCGAGCTAAACCCCGAAGAGCATTCATGCT
*
36682238 AGTGATGTATCC-GGCTAAGTTCCAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
1 AGTGATATATCCGGGCTAAGTTCCAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
* *
36682302 GGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATC
66 GGAGCATTCGTACTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* *
36682367 GGTGCTAAACCCCGAAGAGCATTCATGCT
131 CGAGCTAAACCCCGAAGAGCATTCATGCT
* * * *
36682396 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGT-TCCAAGAGCA
36682428 ATCATGCTGG
Statistics
Matches: 173, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
158 136 0.79
159 17 0.10
160 20 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (159 bp):
AGTGATATATCCGGGCTAAGTTCCAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
GGAGCATTCGTACTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
CGAGCTAAACCCCGAAGAGCATTCATGCT
Found at i:36682439 original size:40 final size:40
Alignment explanation
Indices: 36682078--36682427 Score: 535
Period size: 40 Copynumber: 8.8 Consensus size: 40
36682068 GAGAATTGAG
36682078 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
36682118 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTACT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
36682158 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
36682198 AGTGATATATCCGAGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
36682238 AGTGATGTATCC-GGCTAAGTTCC-AAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
36682276 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
36682316 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** *
36682356 AGTGATATAT-CGGTGCTAAACCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGG-GCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
36682396 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
36682428 ATCATGCTGG
Statistics
Matches: 283, Mismatches: 23, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
38 25 0.09
39 22 0.08
40 233 0.82
41 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:36686186 original size:47 final size:47
Alignment explanation
Indices: 36686132--36686448 Score: 519
Period size: 47 Copynumber: 6.7 Consensus size: 47
36686122 TTAGGATTCT
* * *
36686132 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
36686179 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36686226 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
36686273 ATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
36686320 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
36686367 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
36686414 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36686449 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 255 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:36686207 original size:25 final size:25
Alignment explanation
Indices: 36686179--36686257 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
36686169 CTAATGGCCG
36686179 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
36686204 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
36686226 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
36686251 ATGTGAT
1 ATGTGAT
36686258 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:36686348 original size:25 final size:25
Alignment explanation
Indices: 36686320--36686398 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
36686310 CTAATGGCCG
36686320 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
36686345 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
36686367 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
36686392 ATGTGAT
1 ATGTGAT
36686399 AGGGCCGAGT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:36686623 original size:37 final size:37
Alignment explanation
Indices: 36686567--36686645 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
36686557 CCGAGCTCTA
* * *
36686567 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
36686604 AAGACCCGATAACTTCGTGTGGAGATTATGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36686641 AAGAC
1 AAGAC
36686646 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36694957 original size:39 final size:40
Alignment explanation
Indices: 36694840--36695024 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
36694830 GCTACTCGTT
*
36694840 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36694880 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
36694920 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
36694959 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
36695000 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36695025 CATCATTCGA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36695008 original size:79 final size:80
Alignment explanation
Indices: 36694840--36695024 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
36694830 GCTACTCGTT
* *
36694840 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
36694904 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * **
36694921 CAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
36694984 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
36695000 CAAAGCCTTCGAGACTTAGCCCGGA
1 CAAAGCCTTCG-GGCTTAGCCCGGA
36695025 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 26 0.30
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:36696217 original size:56 final size:56
Alignment explanation
Indices: 36696150--36696269 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
36696140 TATTAGTTTA
36696150 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
36696206 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
36696262 TTGCCCAT
1 TTGCCCAT
36696270 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:36697205 original size:30 final size:30
Alignment explanation
Indices: 36697171--36697231 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36697161 TCCTTAACTC
36697171 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36697201 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36697231 A
1 A
36697232 GGCTCGGTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36700876 original size:48 final size:48
Alignment explanation
Indices: 36700705--36700873 Score: 234
Period size: 48 Copynumber: 3.5 Consensus size: 48
36700695 AGATTCTATA
*
36700705 TAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTG
* * *
36700753 TAAGACTATGTCTGGGACATGGCATCGGTGATGATATATGTGCCATTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTG
* * * *
36700801 TAAGACCATGCCTGGGACATGGCATTGGCGATGATATGTG-GATTCA-TG
1 TAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTG--CCAGTG
36700849 TAAGACCATGTCTGGGACATGGCAT
1 TAAGACCATGTCTGGGACATGGCAT
36700874 TGGTACTTTA
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
47 1 0.01
48 105 0.97
49 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTG
Found at i:36712565 original size:38 final size:38
Alignment explanation
Indices: 36712512--36712905 Score: 439
Period size: 38 Copynumber: 10.3 Consensus size: 38
36712502 ATATTCGATG
* *
36712512 TATATCCGAGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
36712550 TTTATCCGGGTTAAATCCCGCAGGCTTCTTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
36712588 TATATTCGGCTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
36712626 TATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
36712664 TATATTCAGGTTAAATCTCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
36712702 TATATTCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
36712740 TATATCTGGGCTTAAAGACCCGCAGGCTTCGTGTTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* * * * *
36712780 AATATCTGGGTTAAATCTCACAGGCTTCGTACTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* ** *
36712818 TATATCCGGGCTTAAAGACCTACAGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* * * * *
36712858 AATATCCGGGATAAATCTTC-CAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATC-CCGCAGGCTTCGTGCTGGTAT
*
36712896 TATATTCGGG
1 TATATCCGGG
36712906 CCTTCGTGCC
Statistics
Matches: 299, Mismatches: 52, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
38 225 0.75
39 19 0.06
40 55 0.18
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:36714813 original size:20 final size:21
Alignment explanation
Indices: 36714770--36714815 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
36714760 ACTGTTTTGT
36714770 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
36714790 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
36714809 TATGGGC
1 TATGGGC
36714816 AAGGCCCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:36715690 original size:48 final size:48
Alignment explanation
Indices: 36715615--36715794 Score: 279
Period size: 48 Copynumber: 3.8 Consensus size: 48
36715605 GGGTGTTACA
*
36715615 ATGTGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
36715663 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGTTAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* ***
36715711 ATGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCAATGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
36715759 ATGTGTCAATGTAAGACCATGTCTGGGACATGGCAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCAT
36715795 TGGTACTTTA
Statistics
Matches: 120, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 120 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:36723828 original size:43 final size:43
Alignment explanation
Indices: 36723775--36723879 Score: 149
Period size: 43 Copynumber: 2.4 Consensus size: 43
36723765 GGACACATGG
*
36723775 CCTAACCACATGCCCGTGTTATCAGGCCATGTGTCACACACGA
1 CCTAACCACATGCCCGTGTTACCAGGCCATGTGTCACACACGA
* * *
36723818 CCTAACCACATGCCTGTGTTACCATGCCATGTGTCACACACGG
1 CCTAACCACATGCCCGTGTTACCAGGCCATGTGTCACACACGA
*
36723861 TCTAGA-CACATGCCCGTGT
1 CCTA-ACCACATGCCCGTGT
36723880 GTCTACCTGT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 54 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.23
Consensus pattern (43 bp):
CCTAACCACATGCCCGTGTTACCAGGCCATGTGTCACACACGA
Found at i:36724398 original size:14 final size:14
Alignment explanation
Indices: 36724379--36724406 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36724369 CTTAGTAAGT
36724379 TTGTATAATAGAAA
1 TTGTATAATAGAAA
36724393 TTGTATAATAGAAA
1 TTGTATAATAGAAA
36724407 CTAAACCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (14 bp):
TTGTATAATAGAAA
Found at i:36725468 original size:20 final size:20
Alignment explanation
Indices: 36725445--36725483 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36725435 ATTTTTACAT
36725445 AAAATTTAAGAATTTTTCCC
1 AAAATTTAAGAATTTTTCCC
* *
36725465 AAAATTTTAGTATTTTTCC
1 AAAATTTAAGAATTTTTCC
36725484 TTTAATTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (20 bp):
AAAATTTAAGAATTTTTCCC
Found at i:36734122 original size:16 final size:16
Alignment explanation
Indices: 36734101--36734131 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
36734091 CTTAAAGAGA
36734101 TGCTAACAAAATTCAG
1 TGCTAACAAAATTCAG
36734117 TGCTAACAAAATTCA
1 TGCTAACAAAATTCA
36734132 TCTCGGTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (16 bp):
TGCTAACAAAATTCAG
Found at i:36738538 original size:42 final size:42
Alignment explanation
Indices: 36738414--36738544 Score: 113
Period size: 42 Copynumber: 3.1 Consensus size: 42
36738404 TAAGATGCCA
* * * ** *
36738414 ATGCCATATCCCAGATATGGTCTTACATGGGATCACGTATCG
1 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCG
* ** *
36738456 ATGCCGATAG-CCTAG-CTATGGTCTTACACGATGTCTCATATCG
1 ATGCC-AT-GTCCCAGAC-ATGGTCTTACACGAAATCACATATCG
* *
36738499 ATGCCATGTCCCAGACATGGTCTTACACGAAAACACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCG
36738541 ATGC
1 ATGC
36738545 TAATGCCATA
Statistics
Matches: 69, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 36 0.52
43 32 0.46
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCG
Found at i:36738581 original size:21 final size:21
Alignment explanation
Indices: 36738555--36738596 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
36738545 TAATGCCATA
*
36738555 TCCCAGATATGGTCCTACATG
1 TCCCAGACATGGTCCTACATG
*
36738576 TCCCAGACATGGTCTTACATG
1 TCCCAGACATGGTCCTACATG
36738597 GGATCACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (21 bp):
TCCCAGACATGGTCCTACATG
Found at i:36741836 original size:46 final size:47
Alignment explanation
Indices: 36741734--36741958 Score: 185
Period size: 46 Copynumber: 4.8 Consensus size: 47
36741724 ACATTATGAG
* * * *
36741734 AGCCAGTGTAAGACCATATTTGGGACATGGCATTGACACTGAGAC-TA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTGAGACATA
* *
36741781 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACATA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-GAGACATA
* *
36741828 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CT-ATGAGATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGA-GACATA
* * * * *
36741872 TGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATAGTA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTGAGACA-TA
* ** *
36741921 GAACTTGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
36741959 ACCTGACTCC
Statistics
Matches: 145, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 15 0.10
45 18 0.12
46 50 0.34
47 14 0.10
48 14 0.10
49 2 0.01
50 31 0.21
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGAGACATA
Found at i:36744001 original size:42 final size:42
Alignment explanation
Indices: 36743955--36744041 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 42
36743945 GATCATGACT
*
36743955 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAAGCCATGGC
1 TTTAGCGGCGTTTGTGGGAAAAGCGTAGCTAAAAGCCATGGC
* *** * *
36743997 TTTAGTGGCGTTTGTGGTTCAAGCGTAGCTAAAAGTCATGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGTAGCTAAAAGCCATGGC
36744039 TTT
1 TTT
36744042 TAGTGGCGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGTAGCTAAAAGCCATGGC
Found at i:36744071 original size:43 final size:43
Alignment explanation
Indices: 36744024--36744114 Score: 155
Period size: 43 Copynumber: 2.1 Consensus size: 43
36744014 TTCAAGCGTA
*
36744024 GCTAAAAGTCATGTCTTTTAGTGGCGCTATTGTTACAAATGCC
1 GCTAAAAGTCATGTCTTTTAGTGGCGCTATTGTTACAAACGCC
* *
36744067 GCTAAAAGTCATGTCTTTTAGTTGCGCTTTTGTTACAAACGCC
1 GCTAAAAGTCATGTCTTTTAGTGGCGCTATTGTTACAAACGCC
36744110 GCTAA
1 GCTAA
36744115 TTTTGGCAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (43 bp):
GCTAAAAGTCATGTCTTTTAGTGGCGCTATTGTTACAAACGCC
Found at i:36744932 original size:13 final size:14
Alignment explanation
Indices: 36744906--36744937 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
36744896 ACTAACGACG
36744906 AATTAAACCATTAT
1 AATTAAACCATTAT
36744920 AATTAAA-CATTAT
1 AATTAAACCATTAT
36744933 AATTA
1 AATTA
36744938 TTTATAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:36749996 original size:9 final size:9
Alignment explanation
Indices: 36749982--36750176 Score: 89
Period size: 9 Copynumber: 21.7 Consensus size: 9
36749972 TAAGTATAAT
36749982 TAAGTTATG
1 TAAGTTATG
*
36749991 TAAGTTATAA
1 TAAGTTAT-G
* * *
36750001 TATGATATA
1 TAAGTTATG
*
36750010 T-ATTTATG
1 TAAGTTATG
36750018 T-A-TTATG
1 TAAGTTATG
36750025 TAAGTTATG
1 TAAGTTATG
*
36750034 TAAATTATG
1 TAAGTTATG
36750043 TAAGTTATG
1 TAAGTTATG
* * *
36750052 AAATTTTATCTT
1 TAA-GTTA--TG
**
36750064 TAAACTATG
1 TAAGTTATG
*
36750073 TAAGTTGTG
1 TAAGTTATG
36750082 T-A-TTATG
1 TAAGTTATG
36750089 TAAGTTATG
1 TAAGTTATG
* *
36750098 TAAATTATA
1 TAAGTTATG
36750107 TAAGTTATG
1 TAAGTTATG
* * *
36750116 AAATTTGATCTT
1 TAAGTT-A--TG
*
36750128 TAAATTATG
1 TAAGTTATG
36750137 TAAGTTATG
1 TAAGTTATG
36750146 T-A-TTATG
1 TAAGTTATG
*
36750153 TAAATTATG
1 TAAGTTATG
*
36750162 TAAATTATG
1 TAAGTTATG
*
36750171 TGAGTT
1 TAAGTT
36750177 GCTGGTGAAC
Statistics
Matches: 140, Mismatches: 33, Indels: 26
0.70 0.17 0.13
Matches are distributed among these distances:
7 17 0.12
8 10 0.07
9 92 0.66
10 10 0.07
11 3 0.02
12 8 0.06
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:36750073 original size:30 final size:30
Alignment explanation
Indices: 36750034--36750145 Score: 111
Period size: 30 Copynumber: 3.6 Consensus size: 30
36750024 GTAAGTTATG
36750034 TAAATTATGTAAGTTATGAAATTTTATCTT
1 TAAATTATGTAAGTTATGAAATTTTATCTT
* * *
36750064 TAAACTATGTAAGTTGTG-TATTATGTAAGT-TAT
1 TAAATTATGTAAGTTATGAAATT-T-T-A-TCT-T
* *
36750097 GTAAATTATATAAGTTATGAAATTTGATCTT
1 -TAAATTATGTAAGTTATGAAATTTTATCTT
36750128 TAAATTATGTAAGTTATG
1 TAAATTATGTAAGTTATG
36750146 TATTATGTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
29 3 0.05
30 34 0.52
31 3 0.05
32 4 0.06
33 2 0.03
34 16 0.25
35 3 0.05
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAAATTTTATCTT
Found at i:36750091 original size:64 final size:64
Alignment explanation
Indices: 36750013--36750176 Score: 274
Period size: 64 Copynumber: 2.6 Consensus size: 64
36750003 TGATATATAT
*
36750013 TTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTTATCTTTAAACTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAACTATGTAAG
* * *
36750077 TTGTGTATTATGTAAGTTATGTAAATTATATAAGTTATGAAATTTGATCTTTAAATTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAACTATGTAAG
* *
36750141 TTATGTATTATGTAAATTATGTAAATTATGTGAGTT
1 TTATGTATTATGTAAGTTATGTAAATTATGTAAGTT
36750177 GCTGGTGAAC
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 92 1.00
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (64 bp):
TTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAACTATGTAAG
Found at i:36750378 original size:99 final size:98
Alignment explanation
Indices: 36750270--36750852 Score: 605
Period size: 99 Copynumber: 5.7 Consensus size: 98
36750260 AATTAAATTA
36750270 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATGTTAAAA
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAAT-TTAAAA
36750335 TAAAATAAAATATTGAAATTAATTTTCGTGATTC
65 TAAAATAAAATATTGAAATTAATTTTCGTGATTC
* * *
36750369 AAATAAAATAAAATATTTAAAATAAAACTTTAAATATATTTTAATTTAATTAGGTAAATTGAAAA
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT-AATTTAAAA
*** * *
36750434 TAAAATTAAAGA-AAACAAAAT-ATTTTCGTGATTAAATTAAAGTG
65 TAAAA-TAAA-ATATTGAAATTAATTTTCGTG-----A-T----TC
* *
36750478 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATTATGTAATATTAAAA
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAAT-TTAAAA
* * *
36750543 TAAAATAAAATATTGAAATTAATTTTAGTAATTT
65 TAAAATAAAATATTGAAATTAATTTTCGTGATTC
* * * *
36750577 AAATAAAATAAAATATTTAAAATGAATCTTTAAATATAATTTAATTTAATTAGGTAAATTGAAAA
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT-AATTTAAAA
*** * * * *
36750642 TAAAATTAAAGA-AAACAAAATATTTTTTGTGATTAAATT
65 TAAAA-TAAA-ATATTGAAATTAATTTTCGTGA-T---TC
* *
36750681 AAAGTGAAATAAATTAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATTATGTAATG
1 AAA-T---A-AAA-TAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAAT-
36750746 TTAAAATAAAATAAAATATTGAAATTAATTTTCGTGATTC
59 TTAAAATAAAATAAAATATTGAAATTAATTTTCGTGATTC
* * * *
36750786 AAATAAAATAAAATATTTAAAATGAAACTTTAAGTATAATTTAATTTAATTAGGTAAATTGAAAA
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGT-AATTTAAAA
36750851 TA
65 TA
36750853 GAATTAAAGA
Statistics
Matches: 400, Mismatches: 52, Indels: 64
0.78 0.10 0.12
Matches are distributed among these distances:
99 182 0.46
100 38 0.09
101 4 0.01
103 1 0.00
104 8 0.02
105 6 0.01
107 1 0.00
108 15 0.04
109 93 0.23
110 52 0.13
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (98 bp):
AAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAT
AAAATAAAATATTGAAATTAATTTTCGTGATTC
Found at i:36750529 original size:57 final size:56
Alignment explanation
Indices: 36750369--36750549 Score: 153
Period size: 57 Copynumber: 3.3 Consensus size: 56
36750359 TTCGTGATTC
* *
36750369 AAATAAAATAAAATATTTAAAATAAAACTTTAAATATATTTTAATTTAATT-AGGT
1 AAATAAAATAAAATATTTAAAATAAAACTTTAAATATATCTTAATTTAATTAAAGT
* * * * * *
36750424 AAATTGAAAAT-AAA-A-TT-AAAGAAAAC--AAAATATTTTCGTGATTAAATTAAAGT
1 AAA-T-AAAATAAAATATTTAAAATAAAACTTTAAATA-TATCTTAATTTAATTAAAGT
* * *
36750477 GAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATT-ATGT
1 -AAATAAAATAAAATATTTAAAATAAAACTTTAAATATATCTTAATTTAATTAAAGT
36750533 AATATTAAAATAAAATA
1 AA-A-TAAAATAAAATA
36750550 AAATATTGAA
Statistics
Matches: 96, Mismatches: 17, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
51 5 0.05
52 15 0.16
53 15 0.16
54 6 0.06
55 8 0.08
56 16 0.17
57 26 0.27
58 5 0.05
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (56 bp):
AAATAAAATAAAATATTTAAAATAAAACTTTAAATATATCTTAATTTAATTAAAGT
Found at i:36750556 original size:18 final size:18
Alignment explanation
Indices: 36750533--36750599 Score: 53
Period size: 19 Copynumber: 3.6 Consensus size: 18
36750523 TTAATTATGT
36750533 AATATTAAAATAAAATAA
1 AATATTAAAATAAAATAA
* * * **
36750551 AATATTGAAATTAATTTT
1 AATATTAAAATAAAATAA
* *
36750569 AGTAATTTAAATAAAATAA
1 AAT-ATTAAAATAAAATAA
36750588 AATATTTAAAAT
1 AATA-TTAAAAT
36750600 GAATCTTTAA
Statistics
Matches: 34, Mismatches: 13, Indels: 3
0.68 0.26 0.06
Matches are distributed among these distances:
18 16 0.47
19 18 0.53
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
AATATTAAAATAAAATAA
Found at i:36750620 original size:42 final size:37
Alignment explanation
Indices: 36750532--36750609 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
36750522 TTTAATTATG
* * *
36750532 TAAT-ATTAAAATAAAATAAAATATTGAAATTAATTT
1 TAATAATTTAAATAAAATAAAATATTAAAATGAATTT
*
36750568 TAGTAATTTAAATAAAATAAAATATTTAAAATGAATCTT
1 TAATAATTTAAATAAAATAAAATA-TTAAAATGAAT-TT
36750607 TAA
1 TAA
36750610 ATATAATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 3 0.09
37 18 0.53
38 9 0.26
39 4 0.12
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.38
Consensus pattern (37 bp):
TAATAATTTAAATAAAATAAAATATTAAAATGAATTT
Found at i:36750776 original size:209 final size:209
Alignment explanation
Indices: 36750191--36750869 Score: 1198
Period size: 209 Copynumber: 3.3 Consensus size: 209
36750181 GTGAACTTGA
* *
36750191 AAATAGAACTTAATTTAATTAGGTAAATTGAAAATAAAATTAAAGAAAACAAAATATTTTTTGTG
1 AAATATAATTTAATTTAATTAGGTAAATTGAAAATAAAATTAAAGAAAACAAAATATTTTTTGTG
* * *
36750256 ATTAAATTAAATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATT
66 ATTAAATTAAAGTGAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATT
*
36750321 AGGTAATGTTAAAATAAAATAAAATATTGAAATTAATTTTCGTGATTCAAATAAAATAAAATATT
131 ATGTAATGTTAAAATAAAATAAAATATTGAAATTAATTTTCGTGATTCAAATAAAATAAAATATT
*
36750386 TAAAATAAAACTTT
196 TAAAATGAAACTTT
* *
36750400 AAATATATTTTAATTTAATTAGGTAAATTGAAAATAAAATTAAAGAAAACAAAATA-TTTTCGTG
1 AAATATAATTTAATTTAATTAGGTAAATTGAAAATAAAATTAAAGAAAACAAAATATTTTTTGTG
36750464 ATTAAATTAAAGTGAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATT
66 ATTAAATTAAAGTGAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATT
* * * *
36750529 ATGTAATATTAAAATAAAATAAAATATTGAAATTAATTTTAGTAATTTAAATAAAATAAAATATT
131 ATGTAATGTTAAAATAAAATAAAATATTGAAATTAATTTTCGTGATTCAAATAAAATAAAATATT
*
36750594 TAAAATGAATCTTT
196 TAAAATGAAACTTT
36750608 AAATATAATTTAATTTAATTAGGTAAATTGAAAATAAAATTAAAGAAAACAAAATATTTTTTGTG
1 AAATATAATTTAATTTAATTAGGTAAATTGAAAATAAAATTAAAGAAAACAAAATATTTTTTGTG
*
36750673 ATTAAATTAAAGTGAAATAAATTAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATT
66 ATTAAATTAAAGTGAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATT
36750738 ATGTAATGTTAAAATAAAATAAAATATTGAAATTAATTTTCGTGATTCAAATAAAATAAAATATT
131 ATGTAATGTTAAAATAAAATAAAATATTGAAATTAATTTTCGTGATTCAAATAAAATAAAATATT
36750803 TAAAATGAAACTTT
196 TAAAATGAAACTTT
* *
36750817 AAGTATAATTTAATTTAATTAGGTAAATTGAAAATAGAATTAAAGAAAACAAA
1 AAATATAATTTAATTTAATTAGGTAAATTGAAAATAAAATTAAAGAAAACAAA
36750870 TGTATGCCAT
Statistics
Matches: 445, Mismatches: 24, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
208 196 0.44
209 249 0.56
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (209 bp):
AAATATAATTTAATTTAATTAGGTAAATTGAAAATAAAATTAAAGAAAACAAAATATTTTTTGTG
ATTAAATTAAAGTGAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAACTTAATTTAATT
ATGTAATGTTAAAATAAAATAAAATATTGAAATTAATTTTCGTGATTCAAATAAAATAAAATATT
TAAAATGAAACTTT
Found at i:36764293 original size:84 final size:83
Alignment explanation
Indices: 36764203--36764419 Score: 294
Period size: 84 Copynumber: 2.6 Consensus size: 83
36764193 GAAATATATG
* *
36764203 AAAACGACGCCGTTTTCATTAAGCTACTATGTTTTTTTGCGGCGTTTTTTTAAAAAATGT-CGCT
1 AAAACGACGCCGTTTTCGTTAA-CTACTATGTTTTTTTGCGGCGTTTTTTCAAAAAAT-TCCGCT
* *
36764267 ACTCCCCTAAATCTTCAATT
64 AATCCCCTAAATCTCCAATT
* * * *
36764287 AAAACGACGCCGTTTTCGTTATACTATTTTGTTTTCTTGCGGCATTTTTTCAAAAAATTCCGCTA
1 AAAACGACGCCGTTTTCGTTA-ACTACTATGTTTTTTTGCGGCGTTTTTTCAAAAAATTCCGCTA
36764352 ATCCCCTAAATCTCCAATT
65 ATCCCCTAAATCTCCAATT
* *
36764371 AAAACAATGCCGTTTTCGTTAAACTACTATG-TTTTTTGCGGCGTTTTTT
1 AAAACGACGCCGTTTTCGTT-AACTACTATGTTTTTTTGCGGCGTTTTTT
36764420 AAATCTCCAA
Statistics
Matches: 116, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
83 17 0.15
84 97 0.84
85 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.41
Consensus pattern (83 bp):
AAAACGACGCCGTTTTCGTTAACTACTATGTTTTTTTGCGGCGTTTTTTCAAAAAATTCCGCTAA
TCCCCTAAATCTCCAATT
Found at i:36764432 original size:61 final size:61
Alignment explanation
Indices: 36764358--36764482 Score: 223
Period size: 61 Copynumber: 2.0 Consensus size: 61
36764348 GCTAATCCCC
*
36764358 TAAATCTCCAATTAAAACAATGCCGTTTTCGTTAAACTACTATGTTTTTTGCGGCGTTTTT
1 TAAATCTCCAATTAAAACAATGCCATTTTCGTTAAACTACTATGTTTTTTGCGGCGTTTTT
* *
36764419 TAAATCTCCAATTAAAACGATGCCATTTTCGTTAAACTATTATGTTTTTTGCGGCGTTTTT
1 TAAATCTCCAATTAAAACAATGCCATTTTCGTTAAACTACTATGTTTTTTGCGGCGTTTTT
36764480 TAA
1 TAA
36764483 GAAATGCCAC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (61 bp):
TAAATCTCCAATTAAAACAATGCCATTTTCGTTAAACTACTATGTTTTTTGCGGCGTTTTT
Found at i:36764864 original size:7 final size:7
Alignment explanation
Indices: 36764854--36764946 Score: 73
Period size: 7 Copynumber: 13.0 Consensus size: 7
36764844 AACCTTATAT
36764854 CCTAAAC
1 CCTAAAC
36764861 CCTAAAC
1 CCTAAAC
*
36764868 CCTTAAC
1 CCTAAAC
36764875 CCTAAAC
1 CCTAAAC
*
36764882 CCTTAA-
1 CCTAAAC
36764888 CCTATAAC
1 CCTA-AAC
*
36764896 CCTTAGAC
1 CC-TAAAC
*
36764904 TCTAAAC
1 CCTAAAC
*
36764911 CATAAAC
1 CCTAAAC
36764918 CTCT-AAC
1 C-CTAAAC
*
36764925 CCTTAACC
1 CC-TAAAC
36764933 CCTAAAC
1 CCTAAAC
*
36764940 CTTAAAC
1 CCTAAAC
36764947 TCCAACTGTT
Statistics
Matches: 67, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
6 4 0.06
7 51 0.76
8 10 0.15
9 2 0.03
ACGTcount: A:0.38, C:0.39, G:0.01, T:0.23
Consensus pattern (7 bp):
CCTAAAC
Found at i:36764866 original size:21 final size:20
Alignment explanation
Indices: 36764842--36764898 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 20
36764832 CACTAAACTT
*
36764842 TAAACCTTATATCCTAAACCC
1 TAAACCTTA-ACCCTAAACCC
36764863 TAAACCCTTAACCCTAAACCC
1 TAAA-CCTTAACCCTAAACCC
*
36764884 TTAACCTATAACCCT
1 TAAACCT-TAACCCT
36764899 TAGACTCTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 3 0.09
21 24 0.75
22 5 0.16
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (20 bp):
TAAACCTTAACCCTAAACCC
Found at i:36764875 original size:14 final size:14
Alignment explanation
Indices: 36764858--36764944 Score: 90
Period size: 14 Copynumber: 6.1 Consensus size: 14
36764848 TTATATCCTA
36764858 AACCCTAAACCCTT
1 AACCCTAAACCCTT
36764872 AACCCTAAACCCTT
1 AACCCTAAACCCTT
36764886 AA-CCTATAACCCTT
1 AACCCTA-AACCCTT
* * *
36764900 AGACTCTAAACCATA
1 A-ACCCTAAACCCTT
36764915 AACCTCT-AACCCTT
1 AACC-CTAAACCCTT
36764929 AACCCCTAAA-CCTT
1 AA-CCCTAAACCCTT
36764943 AA
1 AA
36764945 ACTCCAACTG
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
13 4 0.07
14 41 0.67
15 13 0.21
16 3 0.05
ACGTcount: A:0.38, C:0.38, G:0.01, T:0.23
Consensus pattern (14 bp):
AACCCTAAACCCTT
Found at i:36764918 original size:29 final size:28
Alignment explanation
Indices: 36764856--36764946 Score: 103
Period size: 29 Copynumber: 3.2 Consensus size: 28
36764846 CCTTATATCC
*
36764856 TAAACCCTA-AACCCTTAACCCTAAACCC
1 TAAA-CCTATAACCCTTAACCCTAAACCA
* *
36764884 TTAACCTATAACCCTTAGACTCTAAACCA
1 TAAACCTATAACCCTTA-ACCCTAAACCA
* *
36764913 TAAACCTCTAACCCTTAACCCCTAAACCT
1 TAAACCTATAACCCTTAA-CCCTAAACCA
36764942 TAAAC
1 TAAAC
36764947 TCCAACTGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
27 4 0.08
28 12 0.23
29 37 0.70
ACGTcount: A:0.38, C:0.37, G:0.01, T:0.23
Consensus pattern (28 bp):
TAAACCTATAACCCTTAACCCTAAACCA
Found at i:36764995 original size:15 final size:15
Alignment explanation
Indices: 36764960--36764997 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
36764950 AACTGTTAAA
36764960 TCATAAA-CCATAAT
1 TCATAAACCCATAAT
* *
36764974 CCCTAAACCCATAAT
1 TCATAAACCCATAAT
36764989 TCATAAACC
1 TCATAAACC
36764998 TTCAAATAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.24
Consensus pattern (15 bp):
TCATAAACCCATAAT
Found at i:36765060 original size:14 final size:14
Alignment explanation
Indices: 36765012--36765065 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
36765002 AATAGTAACT
*
36765012 CCTAAACCTTAAAC
1 CCTAAACCATAAAC
* * *
36765026 CCTACACCATATAT
1 CCTAAACCATAAAC
36765040 CCTAAACCATAAAC
1 CCTAAACCATAAAC
* *
36765054 CCCAAACTATAA
1 CCTAAACCATAA
36765066 TGATAATTAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.20
Consensus pattern (14 bp):
CCTAAACCATAAAC
Found at i:36765473 original size:40 final size:40
Alignment explanation
Indices: 36765429--36765580 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
36765419 ATAATTTATT
* * *
36765429 GCGGCGTTTTTAGGAAAGCGCCGCTAATGGTGGACCTATA
1 GCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGACCTATA
* *
36765469 GCGGCATTTCT-GAAAATGCGCCGCTAATGCTCGATCCT-TA
1 GCGGCGTTTTTAGAAAA-GCGCCGCTAATGCTCGA-CCTATA
* * * * * *
36765509 GCGGCGATTTTATATAAGCCCCGCTAATACTCGATCTATA
1 GCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGACCTATA
* *
36765549 GCGGCGTTTTTAAAAAAGCGCCGCTAAAGCTC
1 GCGGCGTTTTTAGAAAAGCGCCGCTAATGCTC
36765581 AGTATCAAAA
Statistics
Matches: 89, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 6 0.07
40 77 0.87
41 6 0.07
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (40 bp):
GCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGACCTATA
Found at i:36765520 original size:80 final size:80
Alignment explanation
Indices: 36765429--36765580 Score: 180
Period size: 80 Copynumber: 1.9 Consensus size: 80
36765419 ATAATTTATT
* * ** * * *
36765429 GCGGCGTTTTTAGGA-AAGCGCCGCTAATGGTGGACCTATAGCGGCATTTCTGAAAATGCGCCGC
1 GCGGCGATTTTA-GATAAGCCCCGCTAATACTCGACCTATAGCGGCATTTCTAAAAAAGCGCCGC
*
36765493 TAATGCTCGATCCTTA
65 TAAAGCTCGATCCTTA
* * * *
36765509 GCGGCGATTTTATATAAGCCCCGCTAATACTCGATCTATAGCGGCGTTTTTAAAAAAGCGCCGCT
1 GCGGCGATTTTAGATAAGCCCCGCTAATACTCGACCTATAGCGGCATTTCTAAAAAAGCGCCGCT
36765574 AAAGCTC
66 AAAGCTC
36765581 AGTATCAAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (80 bp):
GCGGCGATTTTAGATAAGCCCCGCTAATACTCGACCTATAGCGGCATTTCTAAAAAAGCGCCGCT
AAAGCTCGATCCTTA
Found at i:36768945 original size:16 final size:17
Alignment explanation
Indices: 36768926--36768970 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
36768916 TTAACAATAC
36768926 TTTTAT-CTCAAACATATT
1 TTTTATCCT-AAACATA-T
36768944 TTTTATCCTAAACATAT
1 TTTTATCCTAAACATAT
*
36768961 TTTAATCCTA
1 TTTTATCCTA
36768971 TAAGTAGGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 10 0.40
18 13 0.52
19 2 0.08
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTTATCCTAAACATAT
Found at i:36768963 original size:17 final size:18
Alignment explanation
Indices: 36768926--36768963 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
36768916 TTAACAATAC
36768926 TTTTAT-CTCAAACATATT
1 TTTTATCCT-AAACATATT
36768944 TTTTATCCTAAACATATT
1 TTTTATCCTAAACATATT
36768962 TT
1 TT
36768964 AATCCTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTTATCCTAAACATATT
Found at i:36768968 original size:17 final size:18
Alignment explanation
Indices: 36768935--36768970 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
36768925 CTTTTATCTC
*
36768935 AAACATATTTTTTATCCT
1 AAACATATTTTTAATCCT
36768953 AAACATA-TTTTAATCCT
1 AAACATATTTTTAATCCT
36768970 A
1 A
36768971 TAAGTAGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (18 bp):
AAACATATTTTTAATCCT
Found at i:36773405 original size:14 final size:14
Alignment explanation
Indices: 36773386--36773412 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36773376 TCTTTTGAAA
36773386 ATTTTAATTTTAAT
1 ATTTTAATTTTAAT
36773400 ATTTTAATTTTAA
1 ATTTTAATTTTAA
36773413 ATTAATTCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
ATTTTAATTTTAAT
Found at i:36788666 original size:30 final size:30
Alignment explanation
Indices: 36788632--36788692 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36788622 TCCTTAACTC
36788632 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36788662 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36788692 A
1 A
36788693 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36796280 original size:5 final size:6
Alignment explanation
Indices: 36796241--36796287 Score: 67
Period size: 6 Copynumber: 7.5 Consensus size: 6
36796231 TAATTTTAAT
*
36796241 AAATAA AAATAA AAATCTAA AAGTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
36796288 ACATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (6 bp):
AAATAA
Done.