Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 119 of 349
Found at i:37862905 original size:40 final size:39
Alignment explanation
Indices: 37862821--37863005 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
37862811 TTGAATGATG
* * * *
37862821 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
37862861 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37862901 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37862940 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
37862981 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
37863006 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37862957 original size:79 final size:79
Alignment explanation
Indices: 37862821--37863038 Score: 230
Period size: 79 Copynumber: 2.7 Consensus size: 79
37862811 TTGAATGATG
* * * * ** *
37862821 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCAAT
37862885 TGTGCGAGATACTA-A
64 TGTGCGAGATACTATA
*
37862900 TTCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGCAAT
*
37862964 TGTGCGAGTTACTATA
64 TGTGCGAGATACTATA
* * * *
37862980 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
37863039 TACGTGATTT
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 70 0.59
80 47 0.40
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAATTG
TGCGAGATACTATA
Found at i:37872512 original size:23 final size:23
Alignment explanation
Indices: 37872479--37872556 Score: 72
Period size: 23 Copynumber: 3.4 Consensus size: 23
37872469 TTTTGAGTAT
37872479 TGTGA-TATATGCTTAAATGTTA
1 TGTGATTATATGCTTAAATGTTA
* *
37872501 TGTGATTATATG-TTATATGAGTA
1 TGTGATTATATGCTTAAATG-TTA
* * *
37872524 T-TGTTATATATGCTTGAATGTTG
1 TGTGAT-TATATGCTTAAATGTTA
37872547 TGTGATTATA
1 TGTGATTATA
37872557 AGATAATTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
22 14 0.33
23 21 0.49
24 8 0.19
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.49
Consensus pattern (23 bp):
TGTGATTATATGCTTAAATGTTA
Found at i:37872515 original size:15 final size:15
Alignment explanation
Indices: 37872495--37872532 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
37872485 ATATGCTTAA
* *
37872495 ATGTTATGTGATTAT
1 ATGTTATATGAGTAT
37872510 ATGTTATATGAGTAT
1 ATGTTATATGAGTAT
37872525 -TGTTATAT
1 ATGTTATAT
37872533 ATGCTTGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (15 bp):
ATGTTATATGAGTAT
Found at i:37872577 original size:15 final size:15
Alignment explanation
Indices: 37872557--37872587 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37872547 TGTGATTATA
37872557 AGATAATTGTCATAT
1 AGATAATTGTCATAT
*
37872572 AGATAATTGTGATAT
1 AGATAATTGTCATAT
37872587 A
1 A
37872588 TGCTTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.03, G:0.16, T:0.39
Consensus pattern (15 bp):
AGATAATTGTCATAT
Found at i:37880344 original size:31 final size:31
Alignment explanation
Indices: 37880305--37880373 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
37880295 TCGCACAGAC
* *
37880305 AATG-ACTTAAATTTCTGTTCTGATGAGTTT
1 AATGAACTTAAATATCTGTTCTGATAAGTTT
37880335 AATGAACTTAAATATCTGTTCTGATAAGTTT
1 AATGAACTTAAATATCTGTTCTGATAAGTTT
37880366 AATGAACT
1 AATGAACT
37880374 ATACAAGTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 4 0.11
31 32 0.89
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.42
Consensus pattern (31 bp):
AATGAACTTAAATATCTGTTCTGATAAGTTT
Found at i:37882737 original size:14 final size:14
Alignment explanation
Indices: 37882718--37882744 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37882708 CATGATAAAA
37882718 TAAAATACAAGTGG
1 TAAAATACAAGTGG
37882732 TAAAATACAAGTG
1 TAAAATACAAGTG
37882745 TGCAAGAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
TAAAATACAAGTGG
Found at i:37888602 original size:25 final size:25
Alignment explanation
Indices: 37888568--37888616 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
37888558 GCTATATGAA
37888568 AGTTTGCAAAAATAAATCCGCCAAT
1 AGTTTGCAAAAATAAATCCGCCAAT
*
37888593 AGTTTGCAAAAATAAATCTGCCAA
1 AGTTTGCAAAAATAAATCCGCCAA
37888617 GTGCGAGTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.24
Consensus pattern (25 bp):
AGTTTGCAAAAATAAATCCGCCAAT
Found at i:37891622 original size:39 final size:39
Alignment explanation
Indices: 37891579--37891742 Score: 220
Period size: 39 Copynumber: 4.2 Consensus size: 39
37891569 TATGAGATTG
* *
37891579 AAAATATTCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
*
37891618 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGTA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* * *
37891657 AAAATATTCGAACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
* * * * **
37891696 AATATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
37891735 AAAATATC
1 AAAATATC
37891743 AGGGTTATAG
Statistics
Matches: 108, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 108 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
Found at i:37901064 original size:104 final size:103
Alignment explanation
Indices: 37900888--37901096 Score: 337
Period size: 104 Copynumber: 2.0 Consensus size: 103
37900878 GTTTTCAATA
*
37900888 AAGCTTCTAATAAAAGTGATATATTCTTATTAATTAAAGAACTAAAATTAAATAGAAAAAAGAGT
1 AAGCTTCTAATAAAAGTGATATATTCTTATTAATTAAAGAACTAAAATTAAATAGAAAAAAGAAT
* *
37900953 CTTAATCCTAATTAAGAAAATAATTCTCTTATTCTAAT
66 ATTAATCCTAATTAAGAAAATAATTCCCTTATTCTAAT
* * * *
37900991 AAGCTTCTAATAAAAGTGATATATCTTTTATTAATTAAAGAACTGAACTTAAATAGAGAAAAGAA
1 AAGCTTCTAATAAAAGTGATATAT-TCTTATTAATTAAAGAACTAAAATTAAATAGAAAAAAGAA
*
37901056 TATTAATCCTAATTGAGAAAATAATTCCCTTATTCTAAT
65 TATTAATCCTAATTAAGAAAATAATTCCCTTATTCTAAT
37901095 AA
1 AA
37901097 AGTACTAAAA
Statistics
Matches: 97, Mismatches: 8, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
103 24 0.25
104 73 0.75
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (103 bp):
AAGCTTCTAATAAAAGTGATATATTCTTATTAATTAAAGAACTAAAATTAAATAGAAAAAAGAAT
ATTAATCCTAATTAAGAAAATAATTCCCTTATTCTAAT
Found at i:37901154 original size:41 final size:42
Alignment explanation
Indices: 37901073--37901163 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 42
37901063 CCTAATTGAG
* * * *
37901073 AAAATAATTCCCTTATTCTAATAAAGTACTAAAATATAAAA-
1 AAAATATTTCCCTTATTCTAATAAACTACAAAAAGATAAAAT
* *
37901114 AAAATATTTCTCTTATTCTAATAAACTACAAAAAGGTAAAAT
1 AAAATATTTCCCTTATTCTAATAAACTACAAAAAGATAAAAT
*
37901156 ATAATATT
1 AAAATATT
37901164 CTTAAAATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 35 0.83
42 7 0.17
ACGTcount: A:0.52, C:0.11, G:0.03, T:0.34
Consensus pattern (42 bp):
AAAATATTTCCCTTATTCTAATAAACTACAAAAAGATAAAAT
Found at i:37901221 original size:18 final size:19
Alignment explanation
Indices: 37901175--37901222 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
37901165 TTAAAATATG
37901175 AATAAAATTTATCTACCTA
1 AATAAAATTTATCTACCTA
37901194 AATAAAATTTATCTACCTA
1 AATAAAATTTATCTACCTA
37901213 AAT-AAATTTA
1 AATAAAATTTA
37901223 AAATATATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 7 0.24
19 22 0.76
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (19 bp):
AATAAAATTTATCTACCTA
Found at i:37905501 original size:11 final size:11
Alignment explanation
Indices: 37905485--37905522 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
37905475 GTCCTCTCAT
*
37905485 AATTTTTTCTA
1 AATTTTCTCTA
37905496 AATTTTCTCTA
1 AATTTTCTCTA
*
37905507 AATTCTCTC-A
1 AATTTTCTCTA
37905517 AATTTT
1 AATTTT
37905523 TATCATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
10 6 0.25
11 18 0.75
ACGTcount: A:0.29, C:0.16, G:0.00, T:0.55
Consensus pattern (11 bp):
AATTTTCTCTA
Found at i:37905591 original size:13 final size:13
Alignment explanation
Indices: 37905575--37905602 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37905565 CTCTATTTAA
37905575 AATTTTTTTAATT
1 AATTTTTTTAATT
37905588 AATTTTTTTAATT
1 AATTTTTTTAATT
37905601 AA
1 AA
37905603 AAAATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
AATTTTTTTAATT
Found at i:37906706 original size:30 final size:30
Alignment explanation
Indices: 37906663--37906736 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
37906653 AGAAGGGATG
* *
37906663 ATCACGCGAGCCCATCAATAGCGTCCACACA
1 ATCAC-CGAGCCCATCAACAGCATCCACACA
* *
37906694 ATCACCGGGCCCATTAACAGCATCCACACA
1 ATCACCGAGCCCATCAACAGCATCCACACA
* *
37906724 GTCACCGTGCCCA
1 ATCACCGAGCCCA
37906737 ACACTTCAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 32 0.86
31 5 0.14
ACGTcount: A:0.30, C:0.41, G:0.16, T:0.14
Consensus pattern (30 bp):
ATCACCGAGCCCATCAACAGCATCCACACA
Found at i:37910912 original size:31 final size:30
Alignment explanation
Indices: 37910868--37910954 Score: 77
Period size: 34 Copynumber: 2.8 Consensus size: 30
37910858 GATATTTTAA
*
37910868 ATTAATTAATTAATTAGATAAATATTATTTT
1 ATTAA-TATTTAATTAGATAAATATTATTTT
* *
37910899 ATTAATATTTTAATGAGATATTTATTATTATTTT
1 ATTAATA-TTTAATTAGATA---AATATTATTTT
* *
37910933 ATTATTATTTATTTAG-TAAATA
1 ATTAATATTTAATTAGATAAATA
37910955 AGGAAGGAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
29 3 0.07
30 2 0.04
31 15 0.33
32 2 0.04
33 7 0.16
34 16 0.36
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (30 bp):
ATTAATATTTAATTAGATAAATATTATTTT
Found at i:37913126 original size:46 final size:46
Alignment explanation
Indices: 37913073--37913300 Score: 309
Period size: 46 Copynumber: 5.0 Consensus size: 46
37913063 AGTGTGCTCT
37913073 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
37913119 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
37913165 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC-AC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *
37913210 CGTGACATGAAAAT-AATAAGACCATGGTTGAAAGTTACCATGGCAAC
1 C-TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
37913257 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
37913301 TCATGTCAAA
Statistics
Matches: 166, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
45 9 0.05
46 151 0.91
47 6 0.04
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:37914362 original size:125 final size:127
Alignment explanation
Indices: 37914121--37914382 Score: 399
Period size: 125 Copynumber: 2.1 Consensus size: 127
37914111 GGTGTTACAT
*
37914121 AGTGCATCCTGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAATATTTTTCTCAAAATTATTTT
1 AGTGCATCCTGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAATATTCTTCTCAAAATTATTTT
* * *
37914186 TTTAGATACTACTGTAGCAAAAGAGCGTCCAAGTGTGAGCTTATTTTAGTAATTTTGCTGAC
66 TTCAAATACTACTGTAGCAAAAGAGCGTCCAAGTGTGAGCTTATTTTAGTAATTTTACTGAC
*
37914248 AGTGCATCCTGCTTGAAGCGTTTTGGACATTATTTGTTCA-AAA-ATGTCTTCTCAAAATTA-TT
1 AGTGCATCCTGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAATAT-TCTTCTCAAAATTATTT
* *
37914310 TTTCAAATACTACTGTAGCAAAAGAGCGTCTATGT-TAGAGCTT-TTTTCAGTAATTTTACTGAC
65 TTTCAAATACTACTGTAGCAAAAGAGCGTCCAAGTGT-GAGCTTATTTT-AGTAATTTTACTGAC
37914373 AGTGCATCCT
1 AGTGCATCCT
37914383 AATTTAATTA
Statistics
Matches: 125, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
124 5 0.04
125 65 0.52
126 16 0.13
127 39 0.31
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (127 bp):
AGTGCATCCTGCTTGAAGCGTTTTGGACACTATTTGTTCAGAAATATTCTTCTCAAAATTATTTT
TTCAAATACTACTGTAGCAAAAGAGCGTCCAAGTGTGAGCTTATTTTAGTAATTTTACTGAC
Found at i:37914663 original size:22 final size:23
Alignment explanation
Indices: 37914637--37914679 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
37914627 TTAATTTAAG
37914637 TAATTAACCCT-AAACCCTAATT
1 TAATTAACCCTAAAACCCTAATT
37914659 TAATTAACCCTAAAACCCTAA
1 TAATTAACCCTAAAACCCTAA
37914680 ACACAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (23 bp):
TAATTAACCCTAAAACCCTAATT
Found at i:37914698 original size:7 final size:7
Alignment explanation
Indices: 37914688--37914736 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
37914678 AAACACAATA
37914688 AAACCTT
1 AAACCTT
37914695 AAACTCTT
1 AAAC-CTT
37914703 AAAACCTT
1 -AAACCTT
* *
37914711 AACCCTA
1 AAACCTT
*
37914718 AAACCTA
1 AAACCTT
37914725 AAACCTT
1 AAACCTT
37914732 AAACC
1 AAACC
37914737 CTAATTTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 26 0.72
8 6 0.17
9 4 0.11
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (7 bp):
AAACCTT
Found at i:37914719 original size:22 final size:21
Alignment explanation
Indices: 37914688--37914740 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
37914678 AAACACAATA
*
37914688 AAACCTTAAACTCTTAAAACCTT
1 AAACCCTAAAC-C-TAAAACCTT
37914711 -AACCCTAAAACCTAAAACCTT
1 AAACCCT-AAACCTAAAACCTT
37914732 AAACCCTAA
1 AAACCCTAA
37914741 TTTAATTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 11 0.41
22 12 0.44
23 4 0.15
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (21 bp):
AAACCCTAAACCTAAAACCTT
Found at i:37914770 original size:35 final size:33
Alignment explanation
Indices: 37914719--37914786 Score: 109
Period size: 35 Copynumber: 2.0 Consensus size: 33
37914709 TTAACCCTAA
*
37914719 AACCTAAAACCTTAAACCCTAATTTAATTAATT
1 AACCTAAAAACTTAAACCCTAATTTAATTAATT
37914752 AACCTTAAAAACTCTAAACCCTAATTTAATTAATT
1 AACC-TAAAAACT-TAAACCCTAATTTAATTAATT
37914787 TTTTAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 4 0.12
34 7 0.22
35 21 0.66
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.34
Consensus pattern (33 bp):
AACCTAAAAACTTAAACCCTAATTTAATTAATT
Found at i:37914818 original size:26 final size:26
Alignment explanation
Indices: 37914766--37914840 Score: 62
Period size: 26 Copynumber: 2.7 Consensus size: 26
37914756 TTAAAAACTC
*
37914766 TAAACCCTAATTTAATTAATTTTTTAAAAT
1 TAAACCTTAATTTAATTAA----TTAAAAT
* **
37914796 TAATA-GTTAATTTAATTAATTAACCT
1 TAA-ACCTTAATTTAATTAATTAAAAT
37914822 TAAACCTTAATTTAATTAA
1 TAAACCTTAATTTAATTAA
37914841 CCTTTAAACC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
25 1 0.03
26 21 0.55
30 15 0.39
31 1 0.03
ACGTcount: A:0.44, C:0.09, G:0.01, T:0.45
Consensus pattern (26 bp):
TAAACCTTAATTTAATTAATTAAAAT
Found at i:37914838 original size:22 final size:22
Alignment explanation
Indices: 37914807--37914850 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
37914797 AATAGTTAAT
37914807 TTAATTAATTAACC-TTAAACC
1 TTAATTAATTAACCTTTAAACC
37914828 TTAATTTAATTAACCTTTAAACC
1 TTAA-TTAATTAACCTTTAAACC
37914851 CTAAACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.19
22 10 0.48
23 7 0.33
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (22 bp):
TTAATTAATTAACCTTTAAACC
Found at i:37914853 original size:175 final size:174
Alignment explanation
Indices: 37914380--37914902 Score: 757
Period size: 180 Copynumber: 3.0 Consensus size: 174
37914370 GACAGTGCAT
*
37914380 CCTAATTTAATTAATTAACCTTAAAAA-TCCTAAACCCTAAATTAATTAATTTTTTTTAAATTAA
1 CCTAATTTAATTAATTAACCTTAAAAACT-CTAAACCCTAATTTAATTAA--TTTTTTAAATTAA
* *
37914444 TAGTTAATTTAATTAATTAACCCTAAACCCTAATTTAATTAACCCTAAAATCATAAACACAATAA
63 TAGTTAATTTAATTAATTAACCCTAAACCCTAATTTAATTAACCCTAAAACCCTAAACACAATAA
*
37914509 AACCTTAAACTCTTAAAACCTTAACCCTAAACCCTGAACCTTAAAACTTTAAAC
128 AACCTTAAACTCTTAAAACCTTAACCCT-AA-----AACC-TAAAACCTTAAAC
* * *
37914563 CCTGATTTAATTAATTAACCTTAAAAAC-CTTAAACCTTAATTTAATT-GTTTTTTAAATTAATA
1 CCTAATTTAATTAATTAACCTTAAAAACTC-TAAACCCTAATTTAATTAATTTTTTAAATTAATA
*
37914626 GTTAATTTAAGTAATTAACCCTAAACCCTAATTTAATTAACCCTAAAACCCTAAACACAATAAAA
65 GTTAATTTAATTAATTAACCCTAAACCCTAATTTAATTAACCCTAAAACCCTAAACACAATAAAA
37914691 CCTTAAACTCTTAAAACCTTAACCCTAAAACCTAAAACCTTAAAC
130 CCTTAAACTCTTAAAACCTTAACCCTAAAACCTAAAACCTTAAAC
37914736 CCTAATTTAATTAATTAACCTTAAAAACTCTAAACCCTAATTTAATTAATTTTTTAAAATTAATA
1 CCTAATTTAATTAATTAACCTTAAAAACTCTAAACCCTAATTTAATTAATTTTTT-AAATTAATA
* * * * *
37914801 GTTAATTTAATTAATTAACCTTAAACCTTAATTTAATTAACCTTTAAACCCTAAACACAA-CAAA
65 GTTAATTTAATTAATTAACCCTAAACCCTAATTTAATTAACCCTAAAACCCTAAACACAATAAAA
* * *
37914865 CTCTTAAACTCTTAAAACCCTAACCTTAAACCCTAAAA
130 C-CTTAAACTCTTAAAACCTTAACCCTAAAACCTAAAA
37914903 TCTCAAATCA
Statistics
Matches: 314, Mismatches: 20, Indels: 20
0.89 0.06 0.06
Matches are distributed among these distances:
173 55 0.18
174 15 0.05
175 97 0.31
179 2 0.01
180 103 0.33
182 1 0.00
183 41 0.13
ACGTcount: A:0.44, C:0.20, G:0.01, T:0.34
Consensus pattern (174 bp):
CCTAATTTAATTAATTAACCTTAAAAACTCTAAACCCTAATTTAATTAATTTTTTAAATTAATAG
TTAATTTAATTAATTAACCCTAAACCCTAATTTAATTAACCCTAAAACCCTAAACACAATAAAAC
CTTAAACTCTTAAAACCTTAACCCTAAAACCTAAAACCTTAAAC
Found at i:37919193 original size:14 final size:14
Alignment explanation
Indices: 37919174--37919202 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37919164 AAATTACATA
37919174 TCTTCTGGATATGT
1 TCTTCTGGATATGT
37919188 TCTTCTGGATATGT
1 TCTTCTGGATATGT
37919202 T
1 T
37919203 GGGTCAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.52
Consensus pattern (14 bp):
TCTTCTGGATATGT
Found at i:37925784 original size:28 final size:27
Alignment explanation
Indices: 37925717--37925786 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
37925707 AGAATATGAT
* *
37925717 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
37925744 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
37925772 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
37925787 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:37925802 original size:55 final size:53
Alignment explanation
Indices: 37925662--37925813 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
37925652 TAAATTGTAC
* *
37925662 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAAGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
* ** * ***
37925715 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAA-TATG
* *
37925770 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
37925814 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAAAGAATATG
Found at i:37925818 original size:27 final size:27
Alignment explanation
Indices: 37925663--37925818 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
37925653 AAATTGTACA
* *
37925663 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
37925690 GCACTAAGTGTGCGAAAAGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
37925717 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
37925744 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
37925772 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
37925799 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
37925819 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:37929274 original size:18 final size:18
Alignment explanation
Indices: 37929250--37929313 Score: 92
Period size: 18 Copynumber: 3.6 Consensus size: 18
37929240 ATTCAGTAAT
*
37929250 AGTAAACAGTGTAGTAAC
1 AGTAAACAGTGTAGTATC
* *
37929268 AGCAAACAGTGCAGTATC
1 AGTAAACAGTGTAGTATC
*
37929286 AATAAACAGTGTAGTATC
1 AGTAAACAGTGTAGTATC
37929304 AGTAAACAGT
1 AGTAAACAGT
37929314 ATGCAAGTCC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (18 bp):
AGTAAACAGTGTAGTATC
Found at i:37931004 original size:19 final size:19
Alignment explanation
Indices: 37930980--37931028 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
37930970 TTAAAGATTC
*
37930980 AAAAAATTATTAAATTTATT
1 AAAAAATTATTAAAATTA-T
* *
37931000 TAAAAA-TATAAAAATTAT
1 AAAAAATTATTAAAATTAT
37931018 AAAAAATTATT
1 AAAAAATTATT
37931029 TTTAAAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
18 6 0.26
19 12 0.52
20 5 0.22
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAAATTATTAAAATTAT
Found at i:37934510 original size:39 final size:39
Alignment explanation
Indices: 37934456--37934536 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
37934446 GAAACAAGAG
*
37934456 ATAGTAAAGAAATAATAATGAAAGCATGTAAAAATGGCT
1 ATAGTAAAGAAATAATAATGAAAGCATGTAAAAATAGCT
37934495 ATAGTAAAGAAATAATAATGAAAGCATGTAAAAATAGCT
1 ATAGTAAAGAAATAATAATGAAAGCATGTAAAAATAGCT
37934534 ATA
1 ATA
37934537 AAAGCAAAGC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.56, C:0.05, G:0.16, T:0.23
Consensus pattern (39 bp):
ATAGTAAAGAAATAATAATGAAAGCATGTAAAAATAGCT
Found at i:37935370 original size:3 final size:3
Alignment explanation
Indices: 37935362--37935423 Score: 54
Period size: 3 Copynumber: 20.7 Consensus size: 3
37935352 CTTTATTAAA
* * * * *
37935362 TAT TAT TAT TACT T-C TAT TAT TAT TAA TAT TAT CAC TAT TAT CAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
37935407 TAT TAT TAT TAA TAT TA
1 TAT TAT TAT TAT TAT TA
37935424 GTGTATATTT
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
2 1 0.02
3 42 0.93
4 2 0.04
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.56
Consensus pattern (3 bp):
TAT
Found at i:37935442 original size:21 final size:22
Alignment explanation
Indices: 37935407--37935452 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
37935397 CTATTATCAT
37935407 TATTATTATTAATAT-TAGTGTA
1 TATTATTATTAATATGTA-TGTA
*
37935429 TATTTTTATT-ATATGTATGTA
1 TATTATTATTAATATGTATGTA
37935450 TAT
1 TAT
37935453 GTATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (22 bp):
TATTATTATTAATATGTATGTA
Found at i:37935564 original size:23 final size:22
Alignment explanation
Indices: 37935538--37935661 Score: 89
Period size: 23 Copynumber: 5.5 Consensus size: 22
37935528 TATTTCAATA
37935538 TTATTACTATTATTATTATATTT
1 TTATTA-TATTATTATTATATTT
37935561 TTATTATA-TATTAGTGTATATTT
1 TTATTATATTATTA-T-TATATTT
*
37935584 TTATTATATATGTATATGTATATATAT
1 TTATTATAT-TAT-TAT-TATAT-T-T
*
37935611 TTA-TATA-TAGTATTAT-TTT
1 TTATTATATTATTATTATATTT
*
37935630 TAATTACT-TTATT-TTAATATTT
1 TTATTA-TATTATTATT-ATATTT
37935652 TTATTATATT
1 TTATTATATT
37935662 GTATTTGCTT
Statistics
Matches: 82, Mismatches: 6, Indels: 27
0.71 0.05 0.23
Matches are distributed among these distances:
19 3 0.04
20 5 0.06
21 13 0.16
22 16 0.20
23 24 0.29
24 1 0.01
25 9 0.11
26 7 0.09
27 4 0.05
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (22 bp):
TTATTATATTATTATTATATTT
Found at i:37935566 original size:14 final size:13
Alignment explanation
Indices: 37935547--37935660 Score: 62
Period size: 14 Copynumber: 8.7 Consensus size: 13
37935537 ATTATTACTA
37935547 TTATTATTATATTT
1 TTATTA-TATATTT
37935561 TTATTATATA---
1 TTATTATATATTT
* *
37935571 TTAGTGTATATTT
1 TTATTATATATTT
*
37935584 TTATTATATATGT
1 TTATTATATATTT
* *
37935597 ATATGTATATATAT
1 TTAT-TATATATTT
37935611 TTATATATAGTATTAT
1 TTAT-TATA-TATT-T
37935627 TT-TTA-ATTACTTT
1 TTATTATA-TA-TTT
37935640 ATT-TTA-ATATTT
1 -TTATTATATATTT
37935652 TTATTATAT
1 TTATTATAT
37935661 TGTATTTGCT
Statistics
Matches: 79, Mismatches: 11, Indels: 21
0.71 0.10 0.19
Matches are distributed among these distances:
10 8 0.10
11 2 0.03
12 6 0.08
13 25 0.32
14 31 0.39
15 4 0.05
16 3 0.04
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (13 bp):
TTATTATATATTT
Found at i:37935645 original size:148 final size:144
Alignment explanation
Indices: 37935387--37936135 Score: 1079
Period size: 148 Copynumber: 5.1 Consensus size: 144
37935377 TATTATTATT
* *
37935387 AATATTATCACTATTATCATTATTATTATTAATATTAGTGTATATTTTTATTATATGTATGTATA
1 AATATTATTACTATTATTATTATTATTATTAATATTAGTGTATATTTTTATTATA--TATGTATA
*
37935452 TGTATATATATTTATACATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTGTA
64 TGTATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTGTA
*
37935517 TTGGTTTTTTGTATTTC
129 TT-GCTTTTTGTATTTC
*
37935534 AATATTATTACTATTATTATTATATTTTTATTATATATTAGTGTATATTTTTATTATATATGTAT
1 AATATTATTACTATTATTA-T-TATTATTATTA-ATATTAGTGTATATTTTTATTATATATGTAT
37935599 ATGTATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTGT
63 ATGTATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTGT
37935664 ATTTGCTTTTTTGTATTTC
128 A-TTGC-TTTTTGTATTTC
* * *
37935683 AATATTATTACTACTATTATTATATTTTTATTAATATTAGTGTATTTTTTTATTATATATGTATA
1 AATATTATTACTATTATTA-T-TATTATTATTAATATTAGTGTATATTTTTATTATATATGTATA
*
37935748 TGTATATATATTTATATATAGTATTATTCTTT-ATTACTTTGTTTTAATATTTTTATTATATTG-
64 TGTATATATATTTATATATAGTATTATT-TTTAATTACTTTATTTTAATATTTTTATTATATTGT
*
37935811 A---CTTTTTGTATTTA
128 ATTGCTTTTTGTATTTC
* *
37935825 AATATTATTATTATTATTATTATTATTA-T-ATATTAGTGTATACTTTTTATTATATACGTATAT
1 AATATTATTACTATTATTATTATTATTATTAATATTAGTGTATA-TTTTTATTATATATGTATAT
*
37935888 GTATATGTATATTTATATATAGTATTATTTTTTATTACTTTATTTTAATATTTTTATTATA---T
65 GTATA--TATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTGT
37935950 -TTGCTTTTTGTATTTC
128 ATTGCTTTTTGTATTTC
*
37935966 AATATTATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTATTATATATGTATGTA
1 AATATTATTACTATTATTATTATTATTATTAATATTAGTGTATATTTTTA-T-TATA--TATGTA
*
37936031 TATGTATATATATTTATACATAGTATTATTTTTTTAATTACTTTATTTTAATATTTTTATTATAT
62 TATGTATATATATTTATATATAGTATTA--TTTTTAATTACTTTATTTTAATATTTTTATTATAT
*
37936096 TATATTTGCTTTTTGTATTTC
125 TGTA-TTGCTTTTTGTATTTC
*
37936117 AATATTATTATTATTATTA
1 AATATTATTACTATTATTA
37936136 GTGTATATTT
Statistics
Matches: 552, Mismatches: 23, Indels: 50
0.88 0.04 0.08
Matches are distributed among these distances:
138 12 0.02
139 25 0.05
140 10 0.02
141 88 0.16
142 35 0.06
143 15 0.03
144 23 0.04
146 46 0.08
147 18 0.03
148 163 0.30
149 60 0.11
150 24 0.04
151 33 0.06
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (144 bp):
AATATTATTACTATTATTATTATTATTATTAATATTAGTGTATATTTTTATTATATATGTATATG
TATATATATTTATATATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTATATTGTATT
GCTTTTTGTATTTC
Found at i:37935720 original size:20 final size:23
Alignment explanation
Indices: 37935687--37935880 Score: 72
Period size: 22 Copynumber: 8.4 Consensus size: 23
37935677 TATTTCAATA
37935687 TTATTACTACTATTA-T-TATATTT
1 TTATTA-TA-TATTAGTGTATATTT
*
37935710 TTATTA-ATATTAGTGTATTTTT
1 TTATTATATATTAGTGTATATTT
* *
37935732 TTATTATATATGTATATGTATATAT
1 TTATTATATAT-TA-GTGTATATTT
* *
37935757 AT-TTATATA-TAGTAT-TATTCT
1 TTATTATATATTAGTGTATATT-T
* *
37935778 TTATTA-CT-TT-GTTTTAATATTT
1 TTATTATATATTAG-TGT-ATATTT
** *
37935800 TTATTATATTGACTTTTTGTAT-TTAA
1 TTATTATA-T-A-TTAGTGTATATT-T
* *
37935826 ATATTAT-TATTA-T-TATTATTA
1 TTATTATATATTAGTGTA-TATTT
37935847 TTATTATATATTAGTGTATACTTT
1 TTATTATATATTAGTGTATA-TTT
37935871 TTATTATATA
1 TTATTATATA
37935881 CGTATATGTA
Statistics
Matches: 128, Mismatches: 19, Indels: 47
0.66 0.10 0.24
Matches are distributed among these distances:
20 11 0.09
21 19 0.15
22 33 0.26
23 18 0.14
24 25 0.20
25 10 0.08
26 8 0.06
27 4 0.03
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (23 bp):
TTATTATATATTAGTGTATATTT
Found at i:37935835 original size:3 final size:3
Alignment explanation
Indices: 37935827--37935859 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
37935817 TGTATTTAAA
37935827 TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
37935860 GTGTATACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:37936149 original size:19 final size:19
Alignment explanation
Indices: 37936122--37936183 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
37936112 ATTTCAATAT
*
37936122 TATTATTATTAT-TAGTGTA
1 TATTTTTATTATATA-TGTA
37936141 TATTTTTATTATATATGTA
1 TATTTTTATTATATATGTA
37936160 TA--TTTA-TATATA-GTA
1 TATTTTTATTATATATGTA
37936175 CTATTTTTA
1 -TATTTTTA
37936184 ATTACTTTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
15 3 0.08
16 8 0.21
17 4 0.11
18 4 0.11
19 17 0.45
20 2 0.05
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (19 bp):
TATTTTTATTATATATGTA
Found at i:37936409 original size:435 final size:429
Alignment explanation
Indices: 37935447--37936394 Score: 917
Period size: 433 Copynumber: 2.2 Consensus size: 429
37935437 TTATATGTAT
* * * **
37935447 GTATATGTAT-A-TATATTTATACATAGTATTATTTTTAATTACTTTATTTTAATATTTTTATTA
1 GTATATGTATAACTATATTTACAAATAGTATTATTTTTTATTACTTTATTGAAATATTTTTATTA
* * * *
37935510 TATTGTATTGGTTTTTTGTATTTCAATATTATTACTATTATTATTATATTTTTATTATATATTAG
66 TA---T-TT-G--CTTTGTATGTCAATATTATTACTATTATCATTATATTATTATTATATATTAG
*
37935575 TGTATATTTTTATTATATATGTATATGTATATATATTTATATATAGTATTATTTTTAATTACTTT
124 TGTATATTTTTATTATATATGTATATGTATATATATTTATACATAGTATTATTTTTAATTACTTT
*
37935640 ATTTTAATATTTTTATTATATTGTATTTGCTTTTTTGTATTTCAATATTATTACTACTATTATTA
189 ATTTTAATATTTTTATTATATTATATTTGCTTTTTTGTATTTCAATATTATTACTACTATTATTA
* * *
37935705 TATTTTTATTAATATTAGTGTATTTTTTTATTATATATGTATATGTATATATATTTATATATAGT
254 TATTTTTATTAATATTAGTGTATATTTATATTATATATGTATATGTATATATATTTATATACAGT
* *
37935770 ATTATTCTTTATTACTTTGTTTTAATATTTTTATTATATTGACTTTTTGTATTTAAATATTATTA
319 ATTATTCTTTATTACTTTGTTTT-ATATTTTTATTATATTGACTTATTGTATTTAAATATCATTA
* * ** * ** * * *
37935835 TTATTATTATTATTATTATATATTAGTGTATACTTTTTATTATATAC
383 TCATCATTATTAACATTACATAACAGTGAATACTTTTCATTACATAC
** * * **
37935882 GTATATGTATATGTATATTTATATATAGTATTATTTTTTATTACTTTATTTTAATATTTTTATTA
1 GTATATGTATAACTATATTTACAAATAGTATTATTTTTTATTACTTTATTGAAATATTTTTATTA
*
37935947 TATTTGCTTTTTGTATTTCAATATTATTACTATTATCA-T-TATTATTATTA-ATATTAGTGTAT
66 TATTTGC--TTTGTATGTCAATATTATTACTATTATCATTATATTATTATTATATATTAGTGTAT
37936009 ATTTTTATTATATATGTATGTATATGTATATATATTTATACATAGTATTATTTTTTTAATTACTT
129 ATTTTTA-T-TATA--TATGTATATGTATATATATTTATACATAGTATTA--TTTTTAATTACTT
* *
37936074 TATTTTAATATTTTTATTATATTATATTTGC-TTTTTGTATTTCAATATTATTATTATTATTAGT
188 TATTTTAATATTTTTATTATATTATATTTGCTTTTTTGTATTTCAATATTATTACTACTATTA-T
* *
37936138 GTATATTTTTATT-ATA-TA-TGTATATTTATATATAGTACTATTTTTAAT-TACT-T-TATTT-
252 -TATATTTTTATTAATATTAGTGTATATTTATAT-TA-TA-TATGTAT-ATGTA-TATATATTTA
* * *
37936196 TA-ACATTATTATTATTT-TATA-TTTGCTTTT-TTTTTTGTATT-TCATT-A-TTATTGCTAGT
311 TATACAGTATTATTCTTTAT-TACTTTG-TTTTATATTTT-TATTAT-ATTGACTTATTG-TA-T
* *
37936254 TTTATTATCATTATCATCATTATTAACATATACATACACATGTGAAT-C-TTTCATGTACATA-
370 TTAAATATCATTATCATCATTATTAACAT-TACATA-ACA-GTGAATACTTTTCAT-TACATAC
* *
37936315 TTAGTAT-TTTCAACTAT-TATTACAAATA-TATTATTTCTTTGATTA-TATTATTAGAACATTA
1 GTA-TATGTAT-AACTATAT-TTACAAATAGTATTATTT-TTT-ATTACT-TTATT-GAA-A-TA
37936376 TTTTTATTATAATTT-CTTT
57 TTTTTATTAT-ATTTGCTTT
37936395 ACTGTGAATA
Statistics
Matches: 436, Mismatches: 40, Indels: 73
0.79 0.07 0.13
Matches are distributed among these distances:
429 19 0.04
430 16 0.04
431 14 0.03
432 64 0.15
433 87 0.20
434 61 0.14
435 78 0.18
436 24 0.06
437 56 0.13
438 13 0.03
439 4 0.01
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (429 bp):
GTATATGTATAACTATATTTACAAATAGTATTATTTTTTATTACTTTATTGAAATATTTTTATTA
TATTTGCTTTGTATGTCAATATTATTACTATTATCATTATATTATTATTATATATTAGTGTATAT
TTTTATTATATATGTATATGTATATATATTTATACATAGTATTATTTTTAATTACTTTATTTTAA
TATTTTTATTATATTATATTTGCTTTTTTGTATTTCAATATTATTACTACTATTATTATATTTTT
ATTAATATTAGTGTATATTTATATTATATATGTATATGTATATATATTTATATACAGTATTATTC
TTTATTACTTTGTTTTATATTTTTATTATATTGACTTATTGTATTTAAATATCATTATCATCATT
ATTAACATTACATAACAGTGAATACTTTTCATTACATAC
Found at i:37950045 original size:77 final size:76
Alignment explanation
Indices: 37949947--37950305 Score: 408
Period size: 77 Copynumber: 4.7 Consensus size: 76
37949937 TCCTGATATT
* * *
37949947 TTTATTTCTTTTTTTC--AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGTCACAC
1 TTTAGTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
*
37950010 GCTGAGGCATC
66 GCTGAGGTATC
* *** *
37950021 TTTAGTTCCTATTTTTCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAAATCACG
1 TTTAGTT-CTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
*
37950086 CACTGAGGTAT-
65 CGCTGAGGTATC
* ** *
37950097 TTTCAATT-TACGTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACA
1 TTT-AGTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* *
37950161 TGCTGAGGTATT
65 CGCTGAGGTATC
* *
37950173 TTTAGTTTCTATTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACA
1 TTTAG-TTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* *
37950238 CGCTGAGATTTTC
65 CGCTGAG-GTATC
**
37950251 AATTTATGTTC--TTTTTC-AAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCT
1 --TTTA-GTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
37950306 TTTAATCTCT
Statistics
Matches: 240, Mismatches: 34, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
74 6 0.03
75 66 0.28
76 8 0.03
77 144 0.60
78 8 0.03
80 7 0.03
81 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (76 bp):
TTTAGTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAC
GCTGAGGTATC
Found at i:37950244 original size:152 final size:151
Alignment explanation
Indices: 37949959--37950305 Score: 463
Period size: 152 Copynumber: 2.3 Consensus size: 151
37949949 TATTTCTTTT
37949959 TTTC-AAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGCATCT
1 TTTCAAAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTCGGGTCACACGCTGAGGCATCT
*
37950022 TTAGTTCCTATTTTTCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAAATCACGC
65 TTAGTTCCTATTTTTCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAAATCACAC
37950087 ACTGAGGTATTTTCAATTTA-C-G
130 ACTGA-G-ATTTTCAATTTATCTG
* * *
37950109 TTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTT
1 TTTC-AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACACGCTGAGGCATCT
* **
37950174 TTAGTTTCTATTTTTCAAAAAAATCAACTCATATT-ACGAGAGGTGAGTTGAGCCTCGGGA-CAC
65 TTAGTTCCTATTTTTCAAAAAAATCAACTCATATTGA-GAGAGGTGAGTTGAGCCTC-AAATCAC
* *
37950237 ACGCTGAGATTTTCAATTTATGTTCTT
128 ACACTGAGATTTTCAATTTA---TCTG
** *
37950264 TTTCAAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
37950306 TTTAATCTCT
Statistics
Matches: 175, Mismatches: 12, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
150 16 0.09
151 2 0.01
152 114 0.65
153 3 0.02
154 36 0.21
155 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (151 bp):
TTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCACACGCTGAGGCATCTT
TAGTTCCTATTTTTCAAAAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCTCAAATCACACA
CTGAGATTTTCAATTTATCTG
Found at i:37951975 original size:3 final size:3
Alignment explanation
Indices: 37951894--37951958 Score: 78
Period size: 3 Copynumber: 21.7 Consensus size: 3
37951884 CTTTATTAAA
* * * *
37951894 TAT TAT TAT TAT T-T CTAT TAT TAT TAA TAT TAT CAC TAT TAT CAT
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
37951939 TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
37951959 GTGTATATTT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
2 1 0.02
3 50 0.96
4 1 0.02
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:37952124 original size:20 final size:19
Alignment explanation
Indices: 37952082--37952133 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 19
37952072 TATTATTACT
37952082 ATTAT-TAT-TATATTTTA
1 ATTATATATGTATATTTTA
37952099 ATTATATTAGTGTATATTTT-
1 ATTATA-TA-TGTATATTTTA
37952119 ATTATATATGTATAT
1 ATTATATATGTATAT
37952134 GTATATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 5 0.16
18 7 0.23
19 4 0.13
20 7 0.23
21 8 0.26
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (19 bp):
ATTATATATGTATATTTTA
Found at i:37952126 original size:22 final size:20
Alignment explanation
Indices: 37952074--37952572 Score: 81
Period size: 22 Copynumber: 22.6 Consensus size: 20
37952064 TATTTCAATA
37952074 TTATTACTATTATTATTATATT
1 TTATTA-TA-TATTATTATATT
*
37952096 TTAAT-TATATTAGTGTATATT
1 TTATTATATATTA-T-TATATT
*
37952117 TTATTATATATGTATATGTATAT
1 TTATTATATAT-TAT-TATAT-T
* *
37952140 ATATTTATATATAGTATTATTTT
1 TTA-TTATATAT--TATTATATT
*
37952163 TTAATTACTTTATT-TTAATATTT
1 TT-ATTA-TATATTATT-ATA-TT
*
37952186 TTATTATAT-TGTATT-TGCTT
1 TTATTATATAT-TATTAT-ATT
*
37952206 TT-TTGTAT-TTCA--ATATT
1 TTATTATATATT-ATTATATT
*
37952223 ATTACTACTATTATTATTATATTT
1 -TTATTA-TA-TATTATTATA-TT
*
37952247 TTATTATATATTAGTATATTTT
1 TTATTATATATTA-T-TATATT
37952269 TTATTATATATGTATACGTATATAT
1 TTATTATATAT-TAT---TATAT-T
* *
37952294 ATATTTATATATAGTATTATTTT
1 TTA-TTATATAT--TATTATATT
* *
37952317 TTATTACTTTGTT-TTAATATTT
1 TTATTA-TATATTATT-ATA-TT
* * *
37952339 TTATTATATTGGCTTTTTGTATT
1 TTATTATA-T--ATTATTATATT
* * *
37952362 TCAATAT-TATTACTATTATT
1 TTATTATATATTATTA-TATT
37952382 ATTATTAT-TATTATTATTATT
1 -TTATTATATATTATTA-TATT
37952403 ATTATTATATATTAGTGTATACTT
1 -TTATTATATATTA-T-TATA-TT
*
37952427 GATATTATATACGTATATGTATATGT
1 -TTATTATATA--T-TAT-TATAT-T
* *
37952453 ATATTTATATATAGTATTATTTT
1 TTA-TTATATAT--TATTATATT
*
37952476 TTATTAGTCTATT-TTAATATTT
1 TTATTA-TATATTATT-ATA-TT
* * *
37952498 TTATTATATTTGCTTTTGTATT
1 TTATTATATAT--TATTATATT
* * *
37952520 TCAATAT-TATTACTATTATT
1 TTATTATATATTATTA-TATT
37952540 ATTATTA-ATATTAGTGTATATT
1 -TTATTATATATTA-T-TATATT
37952562 TTATTATATAT
1 TTATTATATAT
37952573 GTATGTATAC
Statistics
Matches: 357, Mismatches: 57, Indels: 126
0.66 0.11 0.23
Matches are distributed among these distances:
17 2 0.01
18 4 0.01
19 18 0.05
20 23 0.06
21 75 0.21
22 85 0.24
23 55 0.15
24 50 0.14
25 16 0.04
26 23 0.06
27 6 0.02
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (20 bp):
TTATTATATATTATTATATT
Found at i:37952163 original size:146 final size:147
Alignment explanation
Indices: 37951919--37952803 Score: 1017
Period size: 146 Copynumber: 6.0 Consensus size: 147
37951909 TATTATTATT
* *
37951919 AATATTATCACTATTATCATTATTATTATT-ATTATTATTAGTGTATATTTTTATTATATGTATG
1 AATATTATTACTATTATTATTATTATT-TTAATTA-TATTAGTGTATA-TTTTATTATA--TATG
* *
37951983 TATATGTATATATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATA
61 TATATATATATATATTTATATATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATA
*
37952048 TTGTATTGGCTTTTTGTATTTC
126 TTGTATTTGCTTTTTGTATTTC
37952070 AATATTATTACTATTATTATTA-TATTTTAATTATATTAGTGTATATTTTATTATATATGTATAT
1 AATATTATTACTATTATTATTATTATTTTAATTATATTAGTGTATATTTTATTATATATGTATAT
*
37952134 GTATATATATTTATATATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTGTA
66 ATATATATATTTATATATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTGTA
37952199 TTTGCTTTTTTGTATTTC
131 TTTGC-TTTTTGTATTTC
* * * *
37952217 AATATTATTACTACTATTATTATTATATTTTTATTATATATTAGTATATTTTTTATTATATATGT
1 AATATTATTACTATTATTATTA-T-TA-TTTTAAT-TATATTAGTGTATATTTTATTATATATGT
*
37952282 ATACGTATATATATATTTATATATAGTATTATTTTTT-ATTACTTTGTTTTAATATTTTTATTAT
62 ATA--TATATATATATTTATATATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTAT
* * *
37952346 ATTGGCTTTTTG-TATTTCAATATTATTAC
125 ATT-G-TATTTGCT-TTT---T-GTATTTC
* * * * *
37952375 TATTATTATTATTATTATTATTATTATTATTATTATATATTAGTGTATACTTGATATTATATACG
1 -AATATTATTACTATTATTATTATTATT-TTAAT-TATATTAGTGTATA-TT-TTATTATATATG
* * *
37952440 TATATGTATATGTATATTTATATATAGTATTATTTTTT-ATTAGTCTATTTTAATATTTTTA-T-
61 TATA--TATATATATATTTATATATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTA
37952502 TA---TATTTGC-TTTTGTATTTC
124 TATTGTATTTGCTTTTTGTATTTC
37952522 AATATTATTAC---TATTATTATTA--TT-A--ATATTAGTGTATATTTTATTATATATGTATGT
1 AATATTATTACTATTATTATTATTATTTTAATTATATTAGTGTATATTTTATTATATATGTA--T
*
37952579 ATACATATATATATTTATACATAGTATTATTTTTTTTAATTACTTTATTTTAATATTTTTATTAT
64 AT--ATATATATATTTATATATAGTATTA--TTTTTTAATTACTTTATTTTAATATTTTTATTAT
*
37952644 ATTATATTTGCTTTTTTGTATTTC
125 ATTGTATTTGC-TTTTTGTATTTC
* *
37952668 AATATTATTACTATTATTATTATTATTATAATTAATACTAGTGTATA-TTTATTATATATGTATA
1 AATATTATTACTATTATTATTATTATTTTAATT-ATATTAGTGTATATTTTATTATATATGTATA
* * * * *
37952732 TATATGTATA-TTATATATAGTACTA--TTTTAATTACTTTATTTTAACATTATTATTAT-TTAT
65 TATATATATATTTATATATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTGT
37952793 ATTTGCTTTTT
130 ATTTGCTTTTT
37952804 TTTTGTATTT
Statistics
Matches: 646, Mismatches: 44, Indels: 96
0.82 0.06 0.12
Matches are distributed among these distances:
134 13 0.02
135 2 0.00
136 38 0.06
138 6 0.01
139 21 0.03
140 3 0.00
141 2 0.00
143 16 0.02
144 17 0.03
145 30 0.05
146 108 0.17
147 38 0.06
148 11 0.02
149 38 0.06
150 18 0.03
151 30 0.05
152 39 0.06
153 30 0.05
154 50 0.08
155 17 0.03
156 2 0.00
157 23 0.04
158 9 0.01
159 85 0.13
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (147 bp):
AATATTATTACTATTATTATTATTATTTTAATTATATTAGTGTATATTTTATTATATATGTATAT
ATATATATATTTATATATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTGTA
TTTGCTTTTTGTATTTC
Found at i:37952381 original size:3 final size:3
Alignment explanation
Indices: 37952366--37952416 Score: 84
Period size: 3 Copynumber: 16.7 Consensus size: 3
37952356 TGTATTTCAA
*
37952366 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
37952415 TA
1 TA
37952417 GTGTATACTT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:37952579 original size:22 final size:22
Alignment explanation
Indices: 37952536--37952581 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
37952526 TTATTACTAT
37952536 TATTATTATTAATATTAGTGTA
1 TATTATTATTAATATTAGTGTA
37952558 TATT-TTATTATATATGTA-TGTA
1 TATTATTATTA-ATAT-TAGTGTA
37952580 TA
1 TA
37952582 CATATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.27
22 14 0.64
23 2 0.09
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.57
Consensus pattern (22 bp):
TATTATTATTAATATTAGTGTA
Found at i:37952609 original size:16 final size:16
Alignment explanation
Indices: 37952567--37952610 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
37952557 ATATTTTATT
* *
37952567 ATATATGTATGTATAC
1 ATATATATATTTATAC
37952583 ATATATATATTTATAC
1 ATATATATATTTATAC
37952599 ATAGTAT-TATTT
1 ATA-TATATATTT
37952611 TTTTTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 22 0.88
17 3 0.12
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.50
Consensus pattern (16 bp):
ATATATATATTTATAC
Found at i:37952809 original size:451 final size:451
Alignment explanation
Indices: 37951909--37952854 Score: 1264
Period size: 451 Copynumber: 2.1 Consensus size: 451
37951899 TTATTATTTC
* * * * **
37951909 TATTATTATTAATATTATCACTATTATCATTATTATTATTATTATTATTAGTGTATATTTTTATT
1 TATTATTACTATTATTATTATTATTATCATTATTATTATTATTATTATTAGTGTATATTGATATT
* *
37951974 ATATGTATGTATATGTATATATATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATT
66 ATA-GTACGTATATGTATATATATTTATACATAGTATTATTTTTTAATTACTCTATTTTAATATT
37952039 TTTATTATATTGTATTGGCTTTTTGTATTTCAATATTATTACTATTATTATTATATTTTAATTAT
130 TTTATTATA-T-TATTGGCTTTTTGTATTTCAATATTATTACTATTATTATTATA-TTTAA-TAT
* *
37952104 ATTAGTGTATATTTTATTATATATGTATATGTATATATATTTATATATAGTATTATTTTTTAATT
191 ATTAGTGTATATTTTATTATATATGTATATATATATATATTTATACATAGTATTATTTTTTAATT
*
37952169 ACTTTATTTTAATATTTTTATTATATTGTATTTGCTTTTTTGTATTTCAATATTATTACTACTAT
256 ACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTTGTATTTCAATATTATTACTACTAT
* * * *
37952234 TATTATTATATTTTTATTATATATTAGTATATTTTTTATTATATATGTATACGTATATATATATT
321 TATTATTATATTATAATTATATACTAGTATATTATTTATTATATATGTATAC-TATATATATATT
* * * *
37952299 TATATATAGTATTATTTTTTATTACTTTGTTTTAATATTTTTATTATATTGGCTTTTTGTATTTC
385 TATATATAGTACTATTTTTAATTACTTTATTTTAATATTATTATTATATTGGCTTTTTGTATTTC
37952364 AA
450 AA
*
37952366 TATTATTACTATTATTATTATTATTATTATTATTATTATTATTATATATTAGTGTATACTTGATA
1 TATTATTACTATTATTATTATTATTATCATTATTATTATTATTAT-TATTAGTGTATA-TTGATA
* *
37952431 TTATA-TACGTATATGTATATGTATATTTATATATAGTATTATTTTTT-ATTAGTCTATTTTAAT
64 TTATAGTACGTATATGTATA--TATATTTATACATAGTATTATTTTTTAATTACTCTATTTTAAT
37952494 ATTTTTATTATA-T-TT-GC-TTTTGTATTTCAATATTATTACTATTATTA-T-TA-TT-A-ATA
127 ATTTTTATTATATTATTGGCTTTTTGTATTTCAATATTATTACTATTATTATTATATTTAATATA
37952550 TTAGTGTATATTTTATTATATATGTATGTATACATATATATATTTATACATAGTATTATTTTTTT
192 TTAGTGTATATTTTATTATATATGTA--TAT--ATATATATATTTATACATAGTATTA--TTTTT
37952615 TAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTTGTATTTCAATATTATTACT
251 TAATTACTTTATTTTAATATTTTTATTATATTATATTTGCTTTTTTGTATTTCAATATTATTACT
* * *
37952680 ATTATTATTA-T-TATTATAATTA-ATACTAGTGTA-TATTTATTATATATGTATA-TATATGTA
316 ACTATTATTATTATATTATAATTATATACTAGTATATTATTTATTATATATGTATACTATATATA
*
37952740 TA-TTATATATAGTACTA-TTTTAATTACTTTATTTTAACATTATTATTATTTATATTTGCTTTT
381 TATTTATATATAGTACTATTTTTAATTACTTTATTTT-A-A-TATTATTA-TTATATTGGC----
*
37952803 TTTTTGTATTTCAT
438 TTTTTGTATTTCAA
* * *
37952817 TATTATTGCTAGTT-TTATTATCATTATCATCATTATTA
1 TATTATTACTA-TTATTATTATTATTATCATTATTATTA
37952855 ATATATACAT
Statistics
Matches: 439, Mismatches: 31, Indels: 44
0.85 0.06 0.09
Matches are distributed among these distances:
443 16 0.04
444 15 0.03
445 39 0.09
446 7 0.02
447 31 0.07
448 11 0.03
449 32 0.07
450 3 0.01
451 123 0.28
452 32 0.07
453 2 0.00
454 2 0.00
455 1 0.00
457 53 0.12
458 38 0.09
459 34 0.08
ACGTcount: A:0.31, C:0.04, G:0.05, T:0.59
Consensus pattern (451 bp):
TATTATTACTATTATTATTATTATTATCATTATTATTATTATTATTATTAGTGTATATTGATATT
ATAGTACGTATATGTATATATATTTATACATAGTATTATTTTTTAATTACTCTATTTTAATATTT
TTATTATATTATTGGCTTTTTGTATTTCAATATTATTACTATTATTATTATATTTAATATATTAG
TGTATATTTTATTATATATGTATATATATATATATTTATACATAGTATTATTTTTTAATTACTTT
ATTTTAATATTTTTATTATATTATATTTGCTTTTTTGTATTTCAATATTATTACTACTATTATTA
TTATATTATAATTATATACTAGTATATTATTTATTATATATGTATACTATATATATATTTATATA
TAGTACTATTTTTAATTACTTTATTTTAATATTATTATTATATTGGCTTTTTGTATTTCAA
Found at i:37952886 original size:147 final size:145
Alignment explanation
Indices: 37952446--37952876 Score: 334
Period size: 147 Copynumber: 3.0 Consensus size: 145
37952436 TACGTATATG
* * * *
37952446 TATATGTATATTTATATATAGTATTATTTTTTATTAGTCTATTTT-A-A-TATT-TT-TATTATA
1 TATATGTATA-TTATATATAGTACTA-TTTTAATTACTTTATTTTAACATTATTATTATATTATA
* * * * * *
37952506 TTTGC--TTTTGTATTTCAATATTATTACTATTATTATTATTAATATTAGT--GTA-TATTTTAT
64 TTTGCTTTTTTGTATTTCAATATTATTACTATTATTATTATCATTA-TAATCAATACTAATATAT
* ** *
37952566 -TATAT-ATGTATGTATA
128 ACATATCACATATGAATA
* * * * * *
37952582 CATATATATATTTATACATAGTATTATTTTTTTTAATTACTTTATTTTAATATTTTTATTATATT
1 TATATGTATA-TTATATATAGTACTA----TTTTAATTACTTTATTTTAACATTATTATTATATT
* * * *
37952647 ATATTTGCTTTTTTGTATTTCAATATTATTACTATTATTATTATTATTATAATTAATACTAGTGT
61 ATATTTGCTTTTTTGTATTTCAATATTATTACTATTATTATTATCATTATAATCAATACTAATAT
** * * *
37952712 ATATTTATTATATATGTATA
126 ATACATATCACATATGAATA
37952732 TATATGTATATTATATATAGTACTATTTTAATTACTTTATTTTAACATTATTATTAT-TTATATT
1 TATATGTATATTATATATAGTACTATTTTAATTACTTTATTTTAACATTATTATTATATTATATT
* * * * *
37952796 TGCTTTTTTTTTGTATTTCATTATTATTGCTAGTT-TTATTATCATTATCATCATTATTAATATA
66 TGC---TTTTTTGTATTTCAATATTATTACTA-TTATTATTATCATTATAATCAATACTAATATA
*
37952860 TACATA-CACATGTGAAT
127 TACATATCACATATGAAT
37952877 CTTTCATGTA
Statistics
Matches: 241, Mismatches: 35, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
136 23 0.10
139 16 0.07
140 1 0.00
141 1 0.00
142 3 0.01
143 2 0.01
144 22 0.09
145 33 0.14
146 45 0.19
147 52 0.22
148 8 0.03
149 17 0.07
150 18 0.07
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (145 bp):
TATATGTATATTATATATAGTACTATTTTAATTACTTTATTTTAACATTATTATTATATTATATT
TGCTTTTTTGTATTTCAATATTATTACTATTATTATTATCATTATAATCAATACTAATATATACA
TATCACATATGAATA
Found at i:37954774 original size:31 final size:33
Alignment explanation
Indices: 37954735--37954819 Score: 95
Period size: 31 Copynumber: 2.7 Consensus size: 33
37954725 AGCCCTTCCT
* *
37954735 GCAT-TAAAATCCAACCAAATACAACAAATATA
1 GCATATAAAATACAACCAAAAACAACAAATATA
* * *
37954767 -C-TATAAAATGCAGCCAAAAACAACAAATTTA
1 GCATATAAAATACAACCAAAAACAACAAATATA
*
37954798 GCATAAAAAATACAACCAAAAA
1 GCATATAAAATACAACCAAAAA
37954820 TATTAATTCT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
30 1 0.02
31 25 0.58
32 1 0.02
33 16 0.37
ACGTcount: A:0.59, C:0.20, G:0.05, T:0.16
Consensus pattern (33 bp):
GCATATAAAATACAACCAAAAACAACAAATATA
Found at i:37955086 original size:21 final size:21
Alignment explanation
Indices: 37955053--37955149 Score: 108
Period size: 21 Copynumber: 4.6 Consensus size: 21
37955043 TCTTCTGCCA
*
37955053 TCGCTGCTACCTCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
37955074 TTGCT-CGTGCCTCTGCCTCCC
1 TCGCTGC-TGCCTCTGCCTCCC
37955095 TCGCTGCTG-CTGCTGCCTCCC
1 TCGCTGCTGCCT-CTGCCTCCC
* *
37955116 TCGCTGCTGTCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
37955137 TCTCTGTTGCCTC
1 TCGCTGCTGCCTC
37955150 GGCTCTAAGA
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.05
21 59 0.92
22 2 0.03
ACGTcount: A:0.01, C:0.47, G:0.20, T:0.32
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:37955589 original size:13 final size:14
Alignment explanation
Indices: 37955564--37955592 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37955554 TAAGGAATTG
37955564 AATTAAACAATTAT
1 AATTAAACAATTAT
37955578 AATTAAAC-ATTAT
1 AATTAAACAATTAT
37955591 AA
1 AA
37955593 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:37958894 original size:12 final size:12
Alignment explanation
Indices: 37958879--37958903 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37958869 TCATCTTCTC
37958879 CATCAGATTCAT
1 CATCAGATTCAT
37958891 CATCAGATTCAT
1 CATCAGATTCAT
37958903 C
1 C
37958904 CCTCGATCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (12 bp):
CATCAGATTCAT
Found at i:37960786 original size:9 final size:9
Alignment explanation
Indices: 37960772--37961026 Score: 275
Period size: 9 Copynumber: 28.7 Consensus size: 9
37960762 TATTTAAGTA
37960772 TTATGTAAG
1 TTATGTAAG
37960781 TTATGTAAG
1 TTATGTAAG
*
37960790 TTATGATATG
1 TTATG-TAAG
* * *
37960800 ATATAT-AT
1 TTATGTAAG
37960808 TTATGTAAG
1 TTATGTAAG
* *
37960817 TTATAT-AT
1 TTATGTAAG
*
37960825 TTATCTAAG
1 TTATGTAAG
**
37960834 TTACATAAG
1 TTATGTAAG
37960843 TTATGTAAG
1 TTATGTAAG
37960852 TTATGTAAG
1 TTATGTAAG
* *
37960861 TTATAT-AT
1 TTATGTAAG
*
37960869 TTATCTAAG
1 TTATGTAAG
*
37960878 TTATATAAG
1 TTATGTAAG
*
37960887 TTATCTAAG
1 TTATGTAAG
37960896 TTATGTAAG
1 TTATGTAAG
*
37960905 TTATATAAG
1 TTATGTAAG
37960914 TTATGTAAG
1 TTATGTAAG
37960923 TTATGTAAG
1 TTATGTAAG
* *
37960932 TTATAT-AT
1 TTATGTAAG
*
37960940 TTATCTAAG
1 TTATGTAAG
*
37960949 TTATATAAG
1 TTATGTAAG
37960958 TTATGTAAG
1 TTATGTAAG
37960967 TTATGTAAG
1 TTATGTAAG
*
37960976 TTATATAAG
1 TTATGTAAG
37960985 TTATGTAAG
1 TTATGTAAG
*
37960994 TTATATAAG
1 TTATGTAAG
37961003 TTATGTAAG
1 TTATGTAAG
*
37961012 TTTTGTAAG
1 TTATGTAAG
37961021 TTATGT
1 TTATGT
37961027 TAAATATTTA
Statistics
Matches: 204, Mismatches: 37, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
8 22 0.11
9 176 0.86
10 6 0.03
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:37960854 original size:71 final size:71
Alignment explanation
Indices: 37960772--37961006 Score: 348
Period size: 71 Copynumber: 3.3 Consensus size: 71
37960762 TATTTAAGTA
* * * * * *
37960772 TTATGTAAGTTATGTAAGTTATGATA-TGATATATATTTATGTAAGTTATAT-ATTTATCTAAGT
1 TTATGTAAGTTATGTAAGTTAT-ATATTTATCTA-AGTTATATAAGTTATATAAGTTATGTAAGT
*
37960835 TACATAAG
64 TATATAAG
*
37960843 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATCTAAGTTATGTAAGTTA
1 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTA
37960908 TATAAG
66 TATAAG
*
37960914 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAGTTA
1 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTA
37960979 TATAAG
66 TATAAG
*
37960985 TTATGTAAGTTATATAAGTTAT
1 TTATGTAAGTTATGTAAGTTAT
37961007 GTAAGTTTTG
Statistics
Matches: 152, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
70 17 0.11
71 135 0.89
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.47
Consensus pattern (71 bp):
TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTA
TATAAG
Found at i:37960856 original size:44 final size:44
Alignment explanation
Indices: 37960779--37961024 Score: 280
Period size: 44 Copynumber: 5.5 Consensus size: 44
37960769 GTATTATGTA
* * * *
37960779 AGTTATGTAAGTTATGATATGATATAT-ATTTATGTAAGTTATAT
1 AGTTATCTAAGTTAT-ATAAGTTATATAAGTTATGTAAGTTATAT
* * *
37960823 ATTTATCTAAGTTACATAAGTTATGTAAGTTATGTAAGTTATAT
1 AGTTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT
* *
37960867 ATTTATCTAAGTTATATAAGTTATCTAAGTTATGTAAGTTATAT
1 AGTTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT
* * * *
37960911 AAGTTATGTAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATAT
1 -AGTTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT
* *
37960955 AAGTTATGTAAGTTATGTAAGTTATATAAGTTATGTAAGTTATAT
1 -AGTTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT
* * *
37961000 AAGTTATGTAAGTTTTGTAAGTTAT
1 -AGTTATCTAAGTTATATAAGTTAT
37961025 GTTAAATATT
Statistics
Matches: 181, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
43 8 0.04
44 112 0.62
45 61 0.34
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (44 bp):
AGTTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT
Found at i:37961156 original size:15 final size:15
Alignment explanation
Indices: 37961136--37961190 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
37961126 TAAGCTGCGG
37961136 ATTAAATAATATTTA
1 ATTAAATAATATTTA
37961151 ATTAAATAATATTT-
1 ATTAAATAATATTTA
37961165 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
37961180 ATTAAATAATA
1 ATTAAATAATA
37961191 CTGAAAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 15 0.43
16 6 0.17
17 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:37961184 original size:29 final size:29
Alignment explanation
Indices: 37961147--37961220 Score: 112
Period size: 29 Copynumber: 2.6 Consensus size: 29
37961137 TTAAATAATA
* *
37961147 TTTAATTAAATAATATTTATAAAAATTAT
1 TTTAATTAAATAATATTGAAAAAAATTAT
*
37961176 TTTAATTAAATAATACTGAAAAAAATTAT
1 TTTAATTAAATAATATTGAAAAAAATTAT
*
37961205 TTTAATTCAATAATAT
1 TTTAATTAAATAATAT
37961221 ACATGTCGGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (29 bp):
TTTAATTAAATAATATTGAAAAAAATTAT
Found at i:37961426 original size:24 final size:24
Alignment explanation
Indices: 37961394--37961464 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
37961384 TTAACTTAAA
*
37961394 TGATAAAACGGGCGATAATATTTG
1 TGATAAAACGGACGATAATATTTG
*
37961418 TGATAAAACGGACAATAATATTTG
1 TGATAAAACGGACGATAATATTTG
*
37961442 TGATAAAACGGACGAGAATATTT
1 TGATAAAACGGACGATAATATTT
37961465 CAATAATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.28
Consensus pattern (24 bp):
TGATAAAACGGACGATAATATTTG
Found at i:37961614 original size:64 final size:64
Alignment explanation
Indices: 37961512--37961645 Score: 241
Period size: 64 Copynumber: 2.1 Consensus size: 64
37961502 ATATTTTATT
* * *
37961512 AAATATTTGTATATTAGATGGGACATATTATATTAATAAATAAATTTATTAAACATCGTGATAG
1 AAATATTTGAATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
37961576 AAATATTTGAATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGAATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
37961640 AAATAT
1 AAATAT
37961646 CGAAATATTA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.37
Consensus pattern (64 bp):
AAATATTTGAATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
Found at i:37964348 original size:19 final size:20
Alignment explanation
Indices: 37964309--37964351 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
37964299 TTTCGATTTT
* *
37964309 GATTCGGGGAAATATTTAGG
1 GATTAGGGGAAATAGTTAGG
37964329 GATTAGGGGAAA-AGTTAGG
1 GATTAGGGGAAATAGTTAGG
37964348 GATT
1 GATT
37964352 TGGAGAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.33, C:0.02, G:0.37, T:0.28
Consensus pattern (20 bp):
GATTAGGGGAAATAGTTAGG
Found at i:37965600 original size:14 final size:14
Alignment explanation
Indices: 37965579--37965629 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
37965569 AGTTTAGATC
37965579 ATGGGTTATGATTT
1 ATGGGTTATGATTT
* *
37965593 AGGGGTTATGCGA-TC
1 ATGGGTTAT--GATTT
37965608 ATGGGTTATGATTT
1 ATGGGTTATGATTT
37965622 ATGGGTTA
1 ATGGGTTA
37965630 GGCTTCATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
13 2 0.07
14 17 0.57
15 9 0.30
16 2 0.07
ACGTcount: A:0.22, C:0.04, G:0.33, T:0.41
Consensus pattern (14 bp):
ATGGGTTATGATTT
Found at i:37966298 original size:41 final size:41
Alignment explanation
Indices: 37966188--37966363 Score: 209
Period size: 41 Copynumber: 4.4 Consensus size: 41
37966178 TAACTCTACC
* *
37966188 TTTTGTGGCG-TTTGGA-AATAAAGCGCCACTATGTCTCAG-T
1 TTTTGCGGCGTTTTGGATAA-AAA-CGCCACTATTTCTCAGTT
*
37966228 TTTTGCGGTGTTTT-GA-AAAAACGCCACTATTTCTCAGTT
1 TTTTGCGGCGTTTTGGATAAAAACGCCACTATTTCTCAGTT
* * *
37966267 TTTTGCAGCGTTTTGGATGAAAACGCCACTATTACTCAGTT
1 TTTTGCGGCGTTTTGGATAAAAACGCCACTATTTCTCAGTT
* *
37966308 TTTAGCGGCGTTTTGGATAAAAACGCCACTATTGCTCAGTT
1 TTTTGCGGCGTTTTGGATAAAAACGCCACTATTTCTCAGTT
**
37966349 TTTAACGGCGTTTTG
1 TTTTGCGGCGTTTTG
37966364 TTTCAAACGC
Statistics
Matches: 120, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
38 15 0.12
39 16 0.13
40 14 0.12
41 75 0.62
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.38
Consensus pattern (41 bp):
TTTTGCGGCGTTTTGGATAAAAACGCCACTATTTCTCAGTT
Found at i:37969300 original size:36 final size:36
Alignment explanation
Indices: 37969260--37969331 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
37969250 TGTTGATATC
37969260 ATCTTTCTTAATCACCATATTTCAAAAAAAAAATTT
1 ATCTTTCTTAATCACCATATTTCAAAAAAAAAATTT
37969296 ATCTTTCTTAATCACCATATTTCAAAAAAAAAATTT
1 ATCTTTCTTAATCACCATATTTCAAAAAAAAAATTT
37969332 TACTTTATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (36 bp):
ATCTTTCTTAATCACCATATTTCAAAAAAAAAATTT
Found at i:37974153 original size:7 final size:7
Alignment explanation
Indices: 37974143--37974172 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
37974133 AATTCTTAAT
37974143 TTTAAAA
1 TTTAAAA
37974150 TTTAAAA
1 TTTAAAA
37974157 TTTAAAA
1 TTTAAAA
37974164 TTTAAAA
1 TTTAAAA
37974171 TT
1 TT
37974173 ATAATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TTTAAAA
Found at i:37976043 original size:22 final size:22
Alignment explanation
Indices: 37976000--37976043 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
37975990 GCCCGCCTGT
** *
37976000 AAAATTAATAATTTTTTTAAAC
1 AAAATTAATAATTAATTCAAAC
*
37976022 AAAATTAATGATTAATTCAAAC
1 AAAATTAATAATTAATTCAAAC
37976044 CTTTGTTTAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAATTAATAATTAATTCAAAC
Found at i:37976332 original size:44 final size:44
Alignment explanation
Indices: 37976275--37976514 Score: 220
Period size: 44 Copynumber: 5.5 Consensus size: 44
37976265 AAGCACAACG
* * * * * *
37976275 GACATATATACAAGAGAGAGAAGAATTGAATAAAACCCATACAT
1 GACATACACACAAGATAGGGAAGAACTGGATAAAACCCATACAT
* *
37976319 GACATACACACAAGATAGGGAAGAACGGGATAAAACCCACACAT
1 GACATACACACAAGATAGGGAAGAACTGGATAAAACCCATACAT
* * * *
37976363 -AGCATATACACAAGATAGGAAAGAATTGGATAAAATCCATACAT
1 GA-CATACACACAAGATAGGGAAGAACTGGATAAAACCCATACAT
* *
37976407 GACATACACACAAGATAGGGAAGAACTGGATAAAACTCACACAT
1 GACATACACACAAGATAGGGAAGAACTGGATAAAACCCATACAT
** * * * *
37976451 -AGCATACGTACAAGAT-GTGGAGGAACGGGATAAAATCCACACATT
1 GA-CATACACACAAGATAG-GGAAGAACTGGATAAAACCCATACA-T
*
37976496 G-CATACACATAAGAT-GGGA
1 GACATACACACAAGATAGGGA
37976515 TTAGGGACCC
Statistics
Matches: 161, Mismatches: 29, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
43 6 0.04
44 153 0.95
45 2 0.01
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.16
Consensus pattern (44 bp):
GACATACACACAAGATAGGGAAGAACTGGATAAAACCCATACAT
Found at i:37976387 original size:88 final size:88
Alignment explanation
Indices: 37976277--37976456 Score: 290
Period size: 88 Copynumber: 2.0 Consensus size: 88
37976267 GCACAACGGA
*
37976277 CATATATACAAGAGAGAGAAGAATTGAATAAAACCCATACATGACATACACACAAGATAGGGAAG
1 CATATACACAAGAGAGAGAAGAATTGAATAAAACCCATACATGACATACACACAAGATAGGGAAG
37976342 AACGGGATAAAACCCACACATAG
66 AACGGGATAAAACCCACACATAG
* * *
37976365 CATATACACAAGATAG-GAAAGAATTGGATAAAATCCATACATGACATACACACAAGATAGGGAA
1 CATATACACAAGAGAGAG-AAGAATTGAATAAAACCCATACATGACATACACACAAGATAGGGAA
* *
37976429 GAACTGGATAAAACTCACACATAG
65 GAACGGGATAAAACCCACACATAG
37976453 CATA
1 CATA
37976457 CGTACAAGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
87 1 0.01
88 84 0.99
ACGTcount: A:0.49, C:0.18, G:0.17, T:0.16
Consensus pattern (88 bp):
CATATACACAAGAGAGAGAAGAATTGAATAAAACCCATACATGACATACACACAAGATAGGGAAG
AACGGGATAAAACCCACACATAG
Found at i:37976464 original size:88 final size:88
Alignment explanation
Indices: 37976295--37976514 Score: 284
Period size: 88 Copynumber: 2.5 Consensus size: 88
37976285 CAAGAGAGAG
* *
37976295 AAGAATTGAATAAAACCCATACATGACATACACACAAGATAGGGAAGAACGGGATAAAACCCACA
1 AAGAATTGGATAAAATCCATACATGACATACACACAAGATAGGGAAGAACGGGATAAAACCCACA
*
37976360 CATAGCATATACACAAGATAG-GA
66 CATAGCATACACACAAGAT-GTGA
* *
37976383 AAGAATTGGATAAAATCCATACATGACATACACACAAGATAGGGAAGAACTGGATAAAACTCACA
1 AAGAATTGGATAAAATCCATACATGACATACACACAAGATAGGGAAGAACGGGATAAAACCCACA
** *
37976448 CATAGCATACGTACAAGATGTGG
66 CATAGCATACACACAAGATGTGA
* ** * *
37976471 AGGAACGGGATAAAATCCACACATTG-CATACACATAAGAT-GGGA
1 AAGAATTGGATAAAATCCATACA-TGACATACACACAAGATAGGGA
37976515 TTAGGGACCC
Statistics
Matches: 117, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
87 5 0.04
88 110 0.94
89 2 0.02
ACGTcount: A:0.47, C:0.18, G:0.19, T:0.16
Consensus pattern (88 bp):
AAGAATTGGATAAAATCCATACATGACATACACACAAGATAGGGAAGAACGGGATAAAACCCACA
CATAGCATACACACAAGATGTGA
Found at i:37977399 original size:43 final size:43
Alignment explanation
Indices: 37977351--37977437 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
37977341 AACATTGATA
37977351 ATTTTATTGAAACAATTAATAATATTAAATATTTAGACTAACT
1 ATTTTATTGAAACAATTAATAATATTAAATATTTAGACTAACT
* *
37977394 ATTTTATTGAAATAGTTAATAATATTAAATATTTAGACTAACT
1 ATTTTATTGAAACAATTAATAATATTAAATATTTAGACTAACT
37977437 A
1 A
37977438 ATGACATTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (43 bp):
ATTTTATTGAAACAATTAATAATATTAAATATTTAGACTAACT
Found at i:37984143 original size:10 final size:10
Alignment explanation
Indices: 37984130--37984163 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
37984120 TTTTTAATAA
37984130 TTTTTTTTAT
1 TTTTTTTTAT
*
37984140 TTTTTATTAT
1 TTTTTTTTAT
*
37984150 TTTATTTTAT
1 TTTTTTTTAT
37984160 TTTT
1 TTTT
37984164 AATTTCAGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:37984151 original size:19 final size:21
Alignment explanation
Indices: 37984119--37984163 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
37984109 GTTAATCACG
37984119 TTTTTTAATAATTTT-TTTTA
1 TTTTTTAATAATTTTATTTTA
*
37984139 TTTTTT-ATTATTTTATTTTA
1 TTTTTTAATAATTTTATTTTA
37984159 TTTTT
1 TTTTT
37984164 AATTTCAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTTAATAATTTTATTTTA
Found at i:37985144 original size:22 final size:21
Alignment explanation
Indices: 37985102--37985152 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
37985092 ATCGAGTGAA
37985102 AATTTTTTTTATGAAAATTTG
1 AATTTTTTTTATGAAAATTTG
*
37985123 GATTTTTTTTAT-AAATATTTTG
1 AATTTTTTTTATGAAA-A-TTTG
37985145 AATTTTTT
1 AATTTTTT
37985153 AAAAAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 3 0.12
21 12 0.46
22 11 0.42
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (21 bp):
AATTTTTTTTATGAAAATTTG
Found at i:37985163 original size:21 final size:21
Alignment explanation
Indices: 37985115--37985164 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
37985105 TTTTTTTATG
* * * *
37985115 AAAATTTGGATTTTTTTTATA
1 AAAATTTTGAATTTTTTAAAA
*
37985136 AATATTTTGAATTTTTTAAAA
1 AAAATTTTGAATTTTTTAAAA
37985157 AAAATTTT
1 AAAATTTT
37985165 CATTGAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (21 bp):
AAAATTTTGAATTTTTTAAAA
Found at i:37986102 original size:77 final size:77
Alignment explanation
Indices: 37985970--37986125 Score: 294
Period size: 77 Copynumber: 2.0 Consensus size: 77
37985960 ACAACCTAAA
*
37985970 TAAGGAGAATGTCAAAGAAGGACCATATAGTATTATGTTTGACGACAACAAACATATAACAGACT
1 TAAGCAGAATGTCAAAGAAGGACCATATAGTATTATGTTTGACGACAACAAACATATAACAGACT
37986035 TGCCACCTAGCT
66 TGCCACCTAGCT
*
37986047 TAAGCAGAATGTCAAAGAAGGACCATATAGTATTATGTTTGATGACAACAAACATATAACAGACT
1 TAAGCAGAATGTCAAAGAAGGACCATATAGTATTATGTTTGACGACAACAAACATATAACAGACT
37986112 TGCCACCTAGCT
66 TGCCACCTAGCT
37986124 TA
1 TA
37986126 CCACATGAAC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.24
Consensus pattern (77 bp):
TAAGCAGAATGTCAAAGAAGGACCATATAGTATTATGTTTGACGACAACAAACATATAACAGACT
TGCCACCTAGCT
Found at i:37987308 original size:10 final size:10
Alignment explanation
Indices: 37987239--37987312 Score: 52
Period size: 10 Copynumber: 7.7 Consensus size: 10
37987229 TGATATGATA
*
37987239 TAAAAATTCT
1 TAAAAATTAT
*
37987249 T-AAAATTTT
1 TAAAAATTAT
37987258 TAAAAATTA-
1 TAAAAATTAT
37987267 T--AAATT-T
1 TAAAAATTAT
*
37987274 CAATAAATTA-
1 TAA-AAATTAT
37987284 TAAAACATTATT
1 TAAAA-ATTA-T
37987296 TAAAAATTAT
1 TAAAAATTAT
37987306 TAAAAAT
1 TAAAAAT
37987313 CCAAAAAAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 18
0.70 0.05 0.25
Matches are distributed among these distances:
7 5 0.10
9 11 0.22
10 26 0.51
11 4 0.08
12 5 0.10
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:37995671 original size:4 final size:4
Alignment explanation
Indices: 37995641--37995703 Score: 53
Period size: 4 Copynumber: 16.2 Consensus size: 4
37995631 CGCCCCCTCC
* *
37995641 CTTT CTCTT CTTT CGTTT C-TT -TTT CTTT CTTT CTCT C-TT CTTT TTTT
1 CTTT CT-TT CTTT C-TTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
*
37995688 CTTT C-CT CTTT CTTT C
1 CTTT CTTT CTTT CTTT C
37995704 CCTTTCTTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
3 8 0.17
4 31 0.66
5 8 0.17
ACGTcount: A:0.00, C:0.29, G:0.02, T:0.70
Consensus pattern (4 bp):
CTTT
Found at i:37995672 original size:19 final size:19
Alignment explanation
Indices: 37995641--37995703 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
37995631 CGCCCCCTCC
*
37995641 CTTTCTCTTCTTTCGTTTCTT
1 CTTTCT-TTCTTTC-TCTCTT
37995662 -TTTCTTTCTTTCTCTCTT
1 CTTTCTTTCTTTCTCTCTT
*
37995680 CTTTTTTTCTTTC-CTCTTT
1 CTTTCTTTCTTTCTCTC-TT
37995699 CTTTC
1 CTTTC
37995704 CCTTTCTTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 8 0.22
19 24 0.65
20 5 0.14
ACGTcount: A:0.00, C:0.29, G:0.02, T:0.70
Consensus pattern (19 bp):
CTTTCTTTCTTTCTCTCTT
Found at i:37995680 original size:30 final size:30
Alignment explanation
Indices: 37995644--37995711 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
37995634 CCCCTCCCTT
*
37995644 TCTCTTCTTTCGTTTCTTT-TTCTTTCTTTC
1 TCTCTTCTTT-GTTTCTTTCCTCTTTCTTTC
*
37995674 TCTCTTCTTTTTTTCTTTCCTCTTTCTTTC
1 TCTCTTCTTTGTTTCTTTCCTCTTTCTTTC
*
37995704 CCT-TTCTT
1 TCTCTTCTT
37995712 CTTCCCTCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 12 0.35
30 22 0.65
ACGTcount: A:0.00, C:0.29, G:0.01, T:0.69
Consensus pattern (30 bp):
TCTCTTCTTTGTTTCTTTCCTCTTTCTTTC
Found at i:37995704 original size:11 final size:10
Alignment explanation
Indices: 37995641--37995711 Score: 69
Period size: 10 Copynumber: 7.3 Consensus size: 10
37995631 CGCCCCCTCC
37995641 CTTTCTC-TT
1 CTTTCTCTTT
*
37995650 CTTTC-GTTT
1 CTTTCTCTTT
*
37995659 CTTTTTCTTT
1 CTTTCTCTTT
37995669 CTTTCTCTCTT
1 CTTTCTCT-TT
37995680 CTTT-T-TTT
1 CTTTCTCTTT
37995688 CTTTCCTCTTT
1 CTTT-CTCTTT
*
37995699 CTTTCCCTTT
1 CTTTCTCTTT
37995709 CTT
1 CTT
37995712 CTTCCCTCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
8 6 0.12
9 12 0.24
10 20 0.39
11 13 0.25
ACGTcount: A:0.00, C:0.30, G:0.01, T:0.69
Consensus pattern (10 bp):
CTTTCTCTTT
Found at i:37995710 original size:10 final size:11
Alignment explanation
Indices: 37995664--37995711 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
37995654 CGTTTCTTTT
37995664 TCTTTCTTT-C
1 TCTTTCTTTCC
37995674 TCTCTTCTTT--
1 TCT-TTCTTTCC
37995684 T-TTTCTTTCC
1 TCTTTCTTTCC
37995694 TCTTTCTTTCC
1 TCTTTCTTTCC
37995705 -CTTTCTT
1 TCTTTCTT
37995712 CTTCCCTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
8 6 0.18
9 1 0.03
10 12 0.35
11 15 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (11 bp):
TCTTTCTTTCC
Found at i:37997469 original size:3 final size:3
Alignment explanation
Indices: 37997461--37997490 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
37997451 TTGAGTCCCT
37997461 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37997491 CAATTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:37999370 original size:30 final size:30
Alignment explanation
Indices: 37999335--37999392 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
37999325 TGGTCACTTC
37999335 CACACGGGT-GATCCACACGCCCATGTGTGA
1 CACACGGGTAGA-CCACACGCCCATGTGTGA
*
37999365 CACACGGGTAGACCACACGCCCGTGTGT
1 CACACGGGTAGACCACACGCCCATGTGT
37999393 AATGGCCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.22, C:0.34, G:0.28, T:0.16
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCATGTGTGA
Found at i:38000964 original size:65 final size:63
Alignment explanation
Indices: 38000847--38000968 Score: 156
Period size: 65 Copynumber: 1.9 Consensus size: 63
38000837 TATAACTTGC
* * **
38000847 AAGAAAATAAACATAGTTAAAATAACATAAAAATTCCAAAATAACATGAACTTATTCTTTATGA
1 AAGAAAATAAACATAGTTAAAACAACATAAAAATGCCAAAATAACACCAACTT-TTCTTTATGA
* *
38000911 AAGAAAATGAAACATATTTAAAAACAACAT-AAAATGCTAAAATAACACCAACTTTTCT
1 AAGAAAAT-AAACATAGTT-AAAACAACATAAAAATGCCAAAATAACACCAACTTTTCT
38000969 AATGATTCTC
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
64 12 0.24
65 29 0.58
66 9 0.18
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (63 bp):
AAGAAAATAAACATAGTTAAAACAACATAAAAATGCCAAAATAACACCAACTTTTCTTTATGA
Found at i:38002981 original size:29 final size:30
Alignment explanation
Indices: 38002960--38003017 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 30
38002950 ATTTTTACCA
*
38002960 AATATTTTAACATA-TTTTTA-TTTTAAAT
1 AATATTTTAAAATATTTTTTATTTTTAAAT
*
38002988 AATTTTTTAAAATATTTTTTATTTTTAAAT
1 AATATTTTAAAATATTTTTTATTTTTAAAT
38003018 TTTATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 12 0.46
29 6 0.23
30 8 0.31
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (30 bp):
AATATTTTAAAATATTTTTTATTTTTAAAT
Found at i:38002996 original size:17 final size:16
Alignment explanation
Indices: 38002962--38002994 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
38002952 TTTTACCAAA
38002962 TATTTTAACATATTTT
1 TATTTTAACATATTTT
38002978 TATTTTAA-ATAATTTT
1 TATTTTAACAT-ATTTT
38002994 T
1 T
38002995 TAAAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (16 bp):
TATTTTAACATATTTT
Found at i:38003025 original size:28 final size:28
Alignment explanation
Indices: 38002959--38003036 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 28
38002949 TATTTTTACC
*
38002959 AAATA-TT-TTAACATA-TTTTTATTTT
1 AAATATTTATTAAAATATTTTTTATTTT
*
38002984 AAATAATTTTTTAAAATATTTTTTATTTTT
1 AAAT-ATTTATTAAAATATTTTTTA-TTTT
* *
38003014 AAAT-TTTATTAAATTATTCTTTA
1 AAATATTTATTAAAATATTTTTTA
38003037 AACTATTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
25 4 0.09
26 1 0.02
27 2 0.05
28 23 0.52
29 6 0.14
30 8 0.18
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (28 bp):
AAATATTTATTAAAATATTTTTTATTTT
Found at i:38003047 original size:24 final size:21
Alignment explanation
Indices: 38003006--38003049 Score: 61
Period size: 24 Copynumber: 2.0 Consensus size: 21
38002996 AAAATATTTT
38003006 TTATTTTTAAATTTTATTAAA
1 TTATTTTTAAATTTTATTAAA
38003027 TTATTCTTTAAACTATTTATTAA
1 TTATT-TTTAAA-T-TTTATTAA
38003050 TGTGATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 6 0.30
23 1 0.05
24 8 0.40
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (21 bp):
TTATTTTTAAATTTTATTAAA
Found at i:38003421 original size:20 final size:21
Alignment explanation
Indices: 38003396--38003435 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
38003386 AATATATATT
38003396 TAATTTAATAA-TAATTAAAA
1 TAATTTAATAATTAATTAAAA
*
38003416 TAATTTTATAATTAATTAAA
1 TAATTTAATAATTAATTAAA
38003436 TTTTATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAATTTAATAATTAATTAAAA
Found at i:38003914 original size:13 final size:13
Alignment explanation
Indices: 38003883--38003934 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 13
38003873 TTAGTATGGC
**
38003883 TTTTGAAAAGTGC
1 TTTTGAAAAGTTT
*
38003896 TATTGAAAAGTTT
1 TTTTGAAAAGTTT
* *
38003909 TTTTGAGAAGTAT
1 TTTTGAAAAGTTT
38003922 TTTTGAAAAGTTT
1 TTTTGAAAAGTTT
38003935 GGTTTAAGAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (13 bp):
TTTTGAAAAGTTT
Found at i:38003919 original size:26 final size:26
Alignment explanation
Indices: 38003883--38003934 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
38003873 TTAGTATGGC
*
38003883 TTTTGAAAAGTGCTATTGAAAAGTTT
1 TTTTGAAAAGTACTATTGAAAAGTTT
* * *
38003909 TTTTGAGAAGTATTTTTGAAAAGTTT
1 TTTTGAAAAGTACTATTGAAAAGTTT
38003935 GGTTTAAGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (26 bp):
TTTTGAAAAGTACTATTGAAAAGTTT
Found at i:38004202 original size:29 final size:28
Alignment explanation
Indices: 38004152--38004207 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
38004142 TTCAAGCAAT
*
38004152 AAATATTAATTATTTATAAAATTTAATTA
1 AAATATAAATTATTTATAAAA-TTAATTA
*
38004181 AAATATAAATTATATT-TTAAATTAATT
1 AAATATAAATTAT-TTATAAAATTAATT
38004208 TTTATATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.25
29 16 0.67
30 2 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
AAATATAAATTATTTATAAAATTAATTA
Found at i:38004284 original size:31 final size:31
Alignment explanation
Indices: 38004233--38004303 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
38004223 AAGTAAAATA
* *
38004233 TATTTTGCCGTAAAATTATGTTGTTAAATGCT
1 TATTTTG-AGTAAAACTATGTTGTTAAATGCT
38004265 TATTTTGAGTAAAACTATGTTGTTAAATGCT
1 TATTTTGAGTAAAACTATGTTGTTAAATGCT
38004296 TATTTTGA
1 TATTTTGA
38004304 ATTATATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
31 30 0.81
32 7 0.19
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (31 bp):
TATTTTGAGTAAAACTATGTTGTTAAATGCT
Found at i:38004499 original size:19 final size:18
Alignment explanation
Indices: 38004455--38004508 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
38004445 TAACATAATT
*
38004455 AAATTTTAAAATATATAA
1 AAATTATAAAATATATAA
*
38004473 AAACTATAAAATA-ATTATA
1 AAATTATAAAATATA-TA-A
*
38004492 AAATTATAAAAAATATA
1 AAATTATAAAATATATA
38004509 TATAATAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 1 0.03
18 13 0.45
19 14 0.48
20 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATTATAAAATATATAA
Found at i:38004510 original size:19 final size:19
Alignment explanation
Indices: 38004462--38004510 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
38004452 ATTAAATTTT
38004462 AAAATATATAAAAACTATAA
1 AAAATATAT-AAAACTATAA
*
38004482 AATAAT-TATAAAATTATAA
1 AA-AATATATAAAACTATAA
38004501 AAAATATATA
1 AAAATATATA
38004511 TAATAGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 3 0.12
19 15 0.58
20 5 0.19
21 3 0.12
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATATATAAAACTATAA
Found at i:38005081 original size:13 final size:12
Alignment explanation
Indices: 38005063--38005091 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
38005053 GTTAAATTAG
38005063 TTTTTTTTTTAA
1 TTTTTTTTTTAA
38005075 TTTTTTTTTTAA
1 TTTTTTTTTTAA
38005087 TTTTT
1 TTTTT
38005092 AAAATAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTTTTTTAA
Found at i:38007512 original size:21 final size:21
Alignment explanation
Indices: 38007488--38007564 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
38007478 GTGGGGGTCT
*
38007488 ACACGCCCATGTGAAGTCCAC
1 ACACGCCCATGTGAAGGCCAC
38007509 ACACGCCCATGTGAAGGCCAC
1 ACACGCCCATGTGAAGGCCAC
** * **
38007530 ACACATCCATGTGTAGGGGAC
1 ACACGCCCATGTGAAGGCCAC
*
38007551 ACACGCCCGTGTGA
1 ACACGCCCATGTGA
38007565 CCAGCCGTGT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.27, C:0.34, G:0.25, T:0.14
Consensus pattern (21 bp):
ACACGCCCATGTGAAGGCCAC
Found at i:38010677 original size:24 final size:24
Alignment explanation
Indices: 38010650--38010699 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
38010640 GAGATAGTAC
*
38010650 TAAGTTGTTTATGGCTATATATGT
1 TAAGTTGTTTATGCCTATATATGT
38010674 TAAGTTGTTTATGCCTATATATGT
1 TAAGTTGTTTATGCCTATATATGT
38010698 TA
1 TA
38010700 TACTTAATGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.26, C:0.06, G:0.18, T:0.50
Consensus pattern (24 bp):
TAAGTTGTTTATGCCTATATATGT
Found at i:38028032 original size:20 final size:20
Alignment explanation
Indices: 38027995--38028047 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
38027985 TTTTACAAAC
* *
38027995 TAAAATAT-AATCTTAAAAA
1 TAAAATATAAATATCAAAAA
* *
38028014 TTAAATCTAAATATCAAAAA
1 TAAAATATAAATATCAAAAA
38028034 TAAAATATAAATAT
1 TAAAATATAAATAT
38028048 ATAATATACA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (20 bp):
TAAAATATAAATATCAAAAA
Found at i:38030922 original size:31 final size:30
Alignment explanation
Indices: 38030887--38031046 Score: 110
Period size: 31 Copynumber: 5.2 Consensus size: 30
38030877 ACTATAATTG
*
38030887 AGCCTTTGTGGTGGAATATGTTATATATGGA
1 AGCCTTTGTGGTGTAATATGTTATATAT-GA
** * * *
38030918 AGCCTTTGTGGTTGTTCTCTATTATATCTG-
1 AGCCTTTGTGG-TGTAATATGTTATATATGA
* **
38030948 AGCCTTTGTGGTAG-AACATGTTATATACAAA
1 AGCCTTTGTGGT-GTAATATGTTATATA-TGA
** * *
38030979 AGCCTTTGTGGTTGTTCTCTGTTATATCTG-
1 AGCCTTTGTGG-TGTAATATGTTATATATGA
* *
38031009 AGCCTTTGTGGAGTAATATGTTATATGTGGA
1 AGCCTTTGTGGTGTAATATGTTATATAT-GA
38031040 AGCCTTT
1 AGCCTTT
38031047 ATGGCTGTTC
Statistics
Matches: 95, Mismatches: 26, Indels: 16
0.69 0.19 0.12
Matches are distributed among these distances:
29 20 0.21
30 24 0.25
31 31 0.33
32 20 0.21
ACGTcount: A:0.22, C:0.12, G:0.24, T:0.42
Consensus pattern (30 bp):
AGCCTTTGTGGTGTAATATGTTATATATGA
Found at i:38030952 original size:30 final size:30
Alignment explanation
Indices: 38030918--38031019 Score: 116
Period size: 30 Copynumber: 3.4 Consensus size: 30
38030908 TATATATGGA
*
38030918 AGCCTTTGTGGTTGTTCTCTATTATATCTG
1 AGCCTTTGTGGTTGTTCTCTGTTATATCTG
* ** * **
38030948 AGCCTTTGTGGTAGAAC-ATGTTATATACAAA
1 AGCCTTTGTGGTTGTTCTCTGTTATAT-C-TG
38030979 AGCCTTTGTGGTTGTTCTCTGTTATATCTG
1 AGCCTTTGTGGTTGTTCTCTGTTATATCTG
38031009 AGCCTTTGTGG
1 AGCCTTTGTGG
38031020 AGTAATATGT
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
29 7 0.12
30 26 0.46
31 15 0.27
32 8 0.14
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.43
Consensus pattern (30 bp):
AGCCTTTGTGGTTGTTCTCTGTTATATCTG
Found at i:38031056 original size:61 final size:60
Alignment explanation
Indices: 38030789--38031071 Score: 262
Period size: 61 Copynumber: 4.7 Consensus size: 60
38030779 ATTTACTAAA
* * * ** * * * * *
38030789 ATATGAAAGCCTTTGTAGTTGTTCTTTGCTATATGTGAGCCATTGTGGTGAAAAATTTTAT
1 ATATGGAAGCCTTTGTGGTTGTTCTCTATTATATCTGAGCCTTTGTGGAG-AATATGTTAT
* * * * * * * * *
38030850 ATGTGAAAGCTTTTGCGGCTATTATCTACTATAAT-TGAGCCTTTGTGGTGGAATATGTTAT
1 ATATGGAAGCCTTTGTGGTTGTTCTCTATTAT-ATCTGAGCCTTTGTGG-AGAATATGTTAT
*
38030911 ATATGGAAGCCTTTGTGGTTGTTCTCTATTATATCTGAGCCTTTGTGGTAGAACATGTTAT
1 ATATGGAAGCCTTTGTGGTTGTTCTCTATTATATCTGAGCCTTTGTGG-AGAATATGTTAT
*** *
38030972 ATACAAAAGCCTTTGTGGTTGTTCTCTGTTATATCTGAGCCTTTGTGGAGTAATATGTTAT
1 ATATGGAAGCCTTTGTGGTTGTTCTCTATTATATCTGAGCCTTTGTGGAG-AATATGTTAT
* * * *
38031033 ATGTGGAAGCCTTTATGGCTGTTCTCTATTATATGTGAG
1 ATATGGAAGCCTTTGTGGTTGTTCTCTATTATATCTGAG
38031072 TCTTACGATG
Statistics
Matches: 182, Mismatches: 36, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
60 4 0.02
61 175 0.96
62 3 0.02
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (60 bp):
ATATGGAAGCCTTTGTGGTTGTTCTCTATTATATCTGAGCCTTTGTGGAGAATATGTTAT
Found at i:38032510 original size:41 final size:41
Alignment explanation
Indices: 38032465--38032595 Score: 210
Period size: 41 Copynumber: 3.2 Consensus size: 41
38032455 TCTCTGAATC
*
38032465 AATGAAAAGGTTGAAAAGGATGTTATCTAAAAAGAATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCTAAAAAGGATATCA
*
38032506 AATGAAAAGGTTGAAAAGGATGTTATCTGAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCTAAAAAGGATATCA
* *
38032547 AATGAAAAGGTTGAAAAGGATATTATCCAAAAAGGATAAT-A
1 AATGAAAAGGTTGAAAAGGATGTTATCTAAAAAGGAT-ATCA
38032588 AATGAAAA
1 AATGAAAA
38032596 TGATGTATTT
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
41 82 0.98
42 2 0.02
ACGTcount: A:0.52, C:0.05, G:0.21, T:0.23
Consensus pattern (41 bp):
AATGAAAAGGTTGAAAAGGATGTTATCTAAAAAGGATATCA
Found at i:38035426 original size:84 final size:84
Alignment explanation
Indices: 38035283--38035540 Score: 369
Period size: 84 Copynumber: 3.1 Consensus size: 84
38035273 TTAGGGTTAA
* *
38035283 ATTTTTTT-TATTACTATTTATTTGTATGTTTGTTACTTAATTAGTATAAACAAACTAATTAAAT
1 ATTTTTTTGTATTATTATTTATTTGTATGCTTGTTACTTAATTAGTATAAA-AAACTAATTAAAT
* *
38035347 ACTGAACTGACATATTTGAG
65 ACTGAAATGATATATTTGAG
* *
38035367 ATTTTTTTGTATTATTATTT-TTTGTATGCTTGTCACTTAATTAGTATAAAGAAATTAATTAAAT
1 ATTTTTTTGTATTATTATTTATTTGTATGCTTGTTACTTAATTAGTATAAA-AAACTAATTAAAT
*
38035431 ACTAAAATGATATATTTGAG
65 ACTGAAATGATATATTTGAG
*
38035451 ATTTTTTTGTATTATTATTTATTTGTATGCTTCTTACTTAATTAGTATGAAAAAACT-ATTAAAT
1 ATTTTTTTGTATTATTATTTATTTGTATGCTTGTTACTTAATTAGTAT-AAAAAACTAATTAAAT
* *
38035515 ATTGAAATGATATGTTTGAG
65 ACTGAAATGATATATTTGAG
*
38035535 GTTTTT
1 ATTTTT
38035541 AGAGTTTTTT
Statistics
Matches: 156, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
84 114 0.73
85 39 0.25
86 3 0.02
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.50
Consensus pattern (84 bp):
ATTTTTTTGTATTATTATTTATTTGTATGCTTGTTACTTAATTAGTATAAAAAACTAATTAAATA
CTGAAATGATATATTTGAG
Found at i:38041482 original size:42 final size:42
Alignment explanation
Indices: 38041373--38041523 Score: 191
Period size: 44 Copynumber: 3.5 Consensus size: 42
38041363 ATATGTGTTA
*
38041373 TCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGATT
*
38041416 TACGTGTAAGACCACGTCTTGGACATTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
*
38041459 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCG-TATTTGATT
*
38041502 AT-ATGTAAGACCACGTCTGGGA
1 -TCGTGTAAGACCACGTCTGGGA
38041524 TGTCGGCATT
Statistics
Matches: 97, Mismatches: 5, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 33 0.34
44 34 0.35
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
Found at i:38041532 original size:43 final size:42
Alignment explanation
Indices: 38041376--38041532 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 42
38041366 TGTGTTATCG
*
38041376 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGATTTA
* * *
38041418 CGTGTAAGACCACGTCTTGGACATTGGCATCG-TATTTGATTTCG
1 --TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTT-A
38041462 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTATA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATT-TA
* *
38041505 TGTAAGACCACGTCTGGGATGTCGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
38041533 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 9, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 38 0.40
44 30 0.31
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTTA
Found at i:38046761 original size:18 final size:18
Alignment explanation
Indices: 38046738--38046774 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
38046728 GCTTGATAAG
38046738 TTAGCTGAGTTATACATT
1 TTAGCTGAGTTATACATT
38046756 TTAGCTGAGTTATACATT
1 TTAGCTGAGTTATACATT
38046774 T
1 T
38046775 CTGATATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (18 bp):
TTAGCTGAGTTATACATT
Found at i:38047062 original size:107 final size:107
Alignment explanation
Indices: 38046870--38047085 Score: 360
Period size: 107 Copynumber: 2.0 Consensus size: 107
38046860 ACAAGAGGCT
*
38046870 TTAGGTATGAAAGTGCAATTCAGTACTGCTTTTCACCCACAAACGGATGGTCAATCTGAGCGGAT
1 TTAGGTATGAAAGTGCAATTCAGTACTGCTTTTCACCCACAAACGGATGGTCAATCCGAGCGGAT
* * * *
38046935 TATTCAGATTCTCGGAGATATGTTGAGATGTTGCATTCTTGA
66 TATTCAGATTCTCAGAGATATGTTGAGATGCTACATTCCTGA
* *
38046977 TTAGGTATGAAAGTGTAATTTAGTACTGCTTTTCACCCACAAACGGATGGTCAATCCGAGCGGAT
1 TTAGGTATGAAAGTGCAATTCAGTACTGCTTTTCACCCACAAACGGATGGTCAATCCGAGCGGAT
*
38047042 TATTCAGATTCTCAGTGATATGTTGAGATGCTACATTCCTGA
66 TATTCAGATTCTCAGAGATATGTTGAGATGCTACATTCCTGA
38047084 TT
1 TT
38047086 TTAAAGGCAC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
107 101 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (107 bp):
TTAGGTATGAAAGTGCAATTCAGTACTGCTTTTCACCCACAAACGGATGGTCAATCCGAGCGGAT
TATTCAGATTCTCAGAGATATGTTGAGATGCTACATTCCTGA
Found at i:38048442 original size:29 final size:29
Alignment explanation
Indices: 38048403--38048461 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
38048393 TTAAAATGTG
38048403 AAATAAATGAAACATATGGACTTGTATGA
1 AAATAAATGAAACATATGGACTTGTATGA
38048432 AAATAAATGAAACATATGGACTTGTATGA
1 AAATAAATGAAACATATGGACTTGTATGA
38048461 A
1 A
38048462 CACTATGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (29 bp):
AAATAAATGAAACATATGGACTTGTATGA
Found at i:38048979 original size:41 final size:40
Alignment explanation
Indices: 38048934--38049082 Score: 124
Period size: 41 Copynumber: 3.6 Consensus size: 40
38048924 TGTGTTATCG
*
38048934 TGTAAGACCATGTCTGGGACGTTGGCATCGACTTATTTATA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TTATTTATA
* * *
38048975 TGTAACACCACGTCTGGGACGCTGGCATCGTATTAGATTT-TG
1 TGTAAGACCACGTCTGGGACGTTGGCATCG-ATT--ATTTATA
* * *
38049017 TGTAAGACC-CTATCTGGGACATTGACATCGA-TATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATTATTT-A-T--A
*
38049060 TCTAAGACCACGTCTGGGACGTT
1 TGTAAGACCACGTCTGGGACGTT
38049083 AACATTGTAC
Statistics
Matches: 85, Mismatches: 13, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
38 4 0.05
40 1 0.01
41 32 0.38
42 25 0.29
43 22 0.26
44 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (40 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTATTTATA
Found at i:38049847 original size:10 final size:10
Alignment explanation
Indices: 38049807--38049849 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
38049797 TATTGAAACA
*
38049807 TATGCTTTGG
1 TATGATTTGG
38049817 TATGATTTTGG
1 TATGA-TTTGG
*
38049828 TTTAGATTTGG
1 TAT-GATTTGG
38049839 TATGATTTGG
1 TATGATTTGG
38049849 T
1 T
38049850 TAGTGAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 12 0.43
11 14 0.50
12 2 0.07
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.53
Consensus pattern (10 bp):
TATGATTTGG
Found at i:38072170 original size:16 final size:18
Alignment explanation
Indices: 38072132--38072176 Score: 67
Period size: 16 Copynumber: 2.6 Consensus size: 18
38072122 AAGACTGAAC
38072132 AAATAATTAACAAAGATAA
1 AAATAATTAACAAAGA-AA
38072151 AAATAATTAA-AAAG-AA
1 AAATAATTAACAAAGAAA
38072167 AAATAATTAA
1 AAATAATTAA
38072177 TTAACTAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.46
18 4 0.15
19 10 0.38
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.22
Consensus pattern (18 bp):
AAATAATTAACAAAGAAA
Found at i:38075026 original size:87 final size:86
Alignment explanation
Indices: 38074917--38075080 Score: 249
Period size: 87 Copynumber: 1.9 Consensus size: 86
38074907 TACATACTTA
* * *
38074917 AGGTTGAGTTCTCACTCTTAATGAATTCATATCCTAG-GATTTGGGTGGTCCTATTAAGATGGAC
1 AGGTTGAGTTATCACTCTTAATGAATTCATATCCCAGAG-TTTGGGTGGTCCTATTAAGATGAAC
38074981 TTGATGAATTCACCGGAATGTG
65 TTGATGAATTCACCGGAATGTG
* * *
38075003 AGGTTGAGTTTATTACTCTTAATGAGTTCATATCCCAGAGTTTGGGTGGTCCTATTGAGATGAAC
1 AGGTTGAG-TTATCACTCTTAATGAATTCATATCCCAGAGTTTGGGTGGTCCTATTAAGATGAAC
38075068 TTGATGAATTCAC
65 TTGATGAATTCAC
38075081 TAAACTTAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
86 8 0.11
87 61 0.87
88 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.36
Consensus pattern (86 bp):
AGGTTGAGTTATCACTCTTAATGAATTCATATCCCAGAGTTTGGGTGGTCCTATTAAGATGAACT
TGATGAATTCACCGGAATGTG
Found at i:38081403 original size:33 final size:33
Alignment explanation
Indices: 38081333--38081423 Score: 128
Period size: 33 Copynumber: 2.7 Consensus size: 33
38081323 TTTAAAAATT
* * * *
38081333 AATTAAATTAGGGTTTAGGGGTTTTAAATAAATA
1 AATTAAATTTGGGTTTA-GTGTTTTAAAGAAAAA
38081367 AATTAAATTTGGGTTTAGTGTTTTAAAGAAAAA
1 AATTAAATTTGGGTTTAGTGTTTTAAAGAAAAA
*
38081400 AATTAAATTTGGGTTTAGTTTTTT
1 AATTAAATTTGGGTTTAGTGTTTT
38081424 TAAAATAATA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
33 36 0.69
34 16 0.31
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (33 bp):
AATTAAATTTGGGTTTAGTGTTTTAAAGAAAAA
Found at i:38081780 original size:126 final size:125
Alignment explanation
Indices: 38081544--38081870 Score: 492
Period size: 126 Copynumber: 2.6 Consensus size: 125
38081534 AATTTACAAC
* ** *
38081544 GCTTCAAGCTGGATGCATTGTCAGCAAAATTACTGAAAAAGCTCTCACTTGGACGCTCTTTTTCT
1 GCTTCAAGCAGGATGCATTGTCAGCAAAATTACAAAAAAAGCTCTCACGTGGACGCTCTTTTTCT
*
38081609 ACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTCAAAAAT
66 ACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTCAAAAAT
* * *
38081669 GCTTTAAGCAGGATGCATTGTCAGCAAAATTGACAAAAAAAGCTCCCACGTGGATGCTCTTTTTC
1 GCTTCAAGCAGGATGCATTGTCAGCAAAATT-ACAAAAAAAGCTCTCACGTGGACGCTCTTTTTC
* * * *
38081734 TATAGTAGTTCCTGAATAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAAT
65 TACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTCAAAAAT
* * * *
38081795 GCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAACAGCTCTCACGTGGACGCTCTTTTTC
1 GCTTCAAGCAGGATGCATTGTCAGCAAAATTAC-AAAAAAAGCTCTCACGTGGACGCTCTTTTTC
38081860 TACAGTAGTTC
65 TACAGTAGTTC
38081871 ATGTTTGGAC
Statistics
Matches: 180, Mismatches: 20, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
125 31 0.17
126 149 0.83
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (125 bp):
GCTTCAAGCAGGATGCATTGTCAGCAAAATTACAAAAAAAGCTCTCACGTGGACGCTCTTTTTCT
ACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTCAAAAAT
Found at i:38084784 original size:42 final size:42
Alignment explanation
Indices: 38084673--38084828 Score: 188
Period size: 42 Copynumber: 3.7 Consensus size: 42
38084663 TACTACACCA
* **** *
38084673 ATGCCATATCCCATATATGGTCTTACATGGGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* *
38084715 ATGCCAATAGCCCAGCTATGGTCTTACACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACAAAATCTCATATCG
*
38084758 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCAT-ATCG
* *
38084800 ATGCCATATCTCAGATATGGTATTACACA
1 ATGCCATATCCCAGATATGGTCTTACACA
38084829 GTCTCGGTAA
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
42 62 0.63
43 36 0.37
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
Found at i:38084803 original size:85 final size:84
Alignment explanation
Indices: 38084673--38084828 Score: 206
Period size: 85 Copynumber: 1.8 Consensus size: 84
38084663 TACTACACCA
* * ** * * *
38084673 ATGCCATATCCCATATATGGTCTTACATGGGATCTCGTATCGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCC-ATAGCCCAGATATGGTA
38084738 TTACACAAAATCTCATATCG
65 TTACACAAAATCTCATATCG
* *
38084758 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAAT-GATGCCATATCTCAGATATGGTA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT-ATCGATGCCATAGCCCAGATATGGTA
38084822 TTACACA
65 TTACACA
38084829 GTCTCGGTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 20 0.33
85 39 0.64
86 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCATAGCCCAGATATGGTAT
TACACAAAATCTCATATCG
Done.