Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 12 of 349
Found at i:3565059 original size:38 final size:38
Alignment explanation
Indices: 3565013--3565086 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
3565003 GTAATGGAAA
* *
3565013 ATATTAATGAATAACTGATTTGTAATTTTTCGATAATG
1 ATATTAATGAATAACGGATTTGTAACTTTTCGATAATG
** * *
3565051 ATATTAATGGGTGACGGATTTGTCACTTTTCGATAA
1 ATATTAATGAATAACGGATTTGTAACTTTTCGATAA
3565087 CATTAGTGAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (38 bp):
ATATTAATGAATAACGGATTTGTAACTTTTCGATAATG
Found at i:3571088 original size:21 final size:21
Alignment explanation
Indices: 3571062--3571110 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
3571052 TGACGTTTTG
3571062 GAAGCCACCATAGAAATTGCT
1 GAAGCCACCATAGAAATTGCT
* **
3571083 GAAGCCACCATTGATCTTGCT
1 GAAGCCACCATAGAAATTGCT
3571104 GAAGCCA
1 GAAGCCA
3571111 TTGGTGATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (21 bp):
GAAGCCACCATAGAAATTGCT
Found at i:3573855 original size:5 final size:5
Alignment explanation
Indices: 3573845--3573878 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
3573835 GCATCGTGTG
3573845 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
3573879 AACACAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:3577939 original size:16 final size:16
Alignment explanation
Indices: 3577918--3577988 Score: 106
Period size: 16 Copynumber: 4.4 Consensus size: 16
3577908 GTTTGGTTCA
*
3577918 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
3577934 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
3577950 CTGTAATGTAATAGAG
1 CTGTAATGGAATAGAG
*
3577966 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
3577982 CTGTAAT
1 CTGTAAT
3577989 AAGTAATTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:3578027 original size:46 final size:44
Alignment explanation
Indices: 3577970--3578063 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 44
3577960 ATAGAGCTGT
3577970 AATGGAATAGAACTGTAATAAGTAATTC-AGCTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCTAG-TGTTTGGTTGAATGG
* *
3578016 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTTAATGG
1 AATGGAATAGAACTGTAATAGTATTCTAGTGTTTGGTTGAATGG
3578060 AATG
1 AATG
3578064 ATATTGTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
44 22 0.49
45 4 0.09
46 19 0.42
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCTAGTGTTTGGTTGAATGG
Found at i:3578059 original size:39 final size:41
Alignment explanation
Indices: 3577969--3578075 Score: 105
Period size: 46 Copynumber: 2.5 Consensus size: 41
3577959 AATAGAGCTG
3577969 TAATGGAATAGAACTGTAATAAGTAATTCAGCTGTTTGGTTGAA
1 TAATGGAATAGAACTGTAAT-AGTAATTCAGCTGTTTGGTT--A
*
3578013 TGGAATGGAATAGAACTGTAATAGT-ATTCTTG-TGTTTGGTT-
1 T--AATGGAATAGAACTGTAATAGTAATTC-AGCTGTTTGGTTA
*
3578054 TAATGGAAT-GATATTGTAATAG
1 TAATGGAATAGA-ACTGTAATAG
3578076 CATAAGAAAA
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
38 2 0.04
39 17 0.30
41 1 0.02
44 14 0.25
45 4 0.07
46 19 0.33
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (41 bp):
TAATGGAATAGAACTGTAATAGTAATTCAGCTGTTTGGTTA
Found at i:3578189 original size:26 final size:25
Alignment explanation
Indices: 3578142--3578192 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
3578132 GTGATTATTG
*
3578142 TTATTGTTATTAAATTTTAATAAAA
1 TTATTGTTAATAAATTTTAATAAAA
*
3578167 TTATTGTTAAATATATTTTAATAAAA
1 TTATTGTT-AATAAATTTTAATAAAA
3578193 ATAAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (25 bp):
TTATTGTTAATAAATTTTAATAAAA
Found at i:3578319 original size:58 final size:58
Alignment explanation
Indices: 3578153--3578331 Score: 134
Period size: 58 Copynumber: 3.1 Consensus size: 58
3578143 TATTGTTATT
* * * * * * * * *
3578153 AAATTTTAATAAAATTATTGTTAAATATATTTTAATAAAAATAAAAATAAATAATTTAATC
1 AAATTTTAATATAATCATTATTAAATACA-ATTCA-AAAAAT-ATAATATATAATTTAATA
* * *
3578214 ATATTTTAATATAATTATTATTAAATACAATTCAATAAAGTAT--TATATAATTTAATA
1 AAATTTTAATATAATCATTATTAAATACAATTCAA-AAAATATAATATATAATTTAATA
* *
3578271 AAATTCTTAATATAATCATTATTATAT-GAATT-AAAAAATCATAATATATAATATT-ATA
1 AAATT-TTAATATAATCATTATTAAATACAATTCAAAAAAT-ATAATATATAAT-TTAATA
3578329 AAA
1 AAA
3578332 ATAATATATA
Statistics
Matches: 97, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
55 4 0.04
56 4 0.04
57 20 0.21
58 33 0.34
59 4 0.04
60 7 0.07
61 25 0.26
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (58 bp):
AAATTTTAATATAATCATTATTAAATACAATTCAAAAAATATAATATATAATTTAATA
Found at i:3578326 original size:23 final size:21
Alignment explanation
Indices: 3578300--3578342 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
3578290 TATTATATGA
3578300 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
3578323 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
3578343 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:3583697 original size:5 final size:5
Alignment explanation
Indices: 3583687--3583727 Score: 64
Period size: 5 Copynumber: 7.8 Consensus size: 5
3583677 CGAATTTGTA
3583687 AAAAT AAAAT AAAAT AAAAT AAAAAGT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT -AAAA-T AAAAT AAAAT AAAA
3583728 CAAACAGATT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 25 0.74
6 8 0.24
7 1 0.03
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:3583716 original size:22 final size:21
Alignment explanation
Indices: 3583685--3583727 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
3583675 TACGAATTTG
3583685 TAAAAATAAAATAAAATAAAA
1 TAAAAATAAAATAAAATAAAA
3583706 TAAAAAGTAAAATAAAATAAAA
1 TAAAAA-TAAAATAAAATAAAA
3583728 CAAACAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (21 bp):
TAAAAATAAAATAAAATAAAA
Found at i:3585569 original size:12 final size:12
Alignment explanation
Indices: 3585552--3585579 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
3585542 CTATTTTTTC
3585552 TTATTCTCATTA
1 TTATTCTCATTA
3585564 TTATTCTCATTA
1 TTATTCTCATTA
3585576 TTAT
1 TTAT
3585580 CATACTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.14, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATTCTCATTA
Found at i:3586873 original size:6 final size:6
Alignment explanation
Indices: 3586858--3586886 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
3586848 TAGATTTGGT
3586858 AAAT-A AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA
3586887 TAAAAACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 19 0.83
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:3588560 original size:18 final size:18
Alignment explanation
Indices: 3588528--3588562 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3588518 TTATGTGTAT
* *
3588528 TGTATTTGTACATAAATA
1 TGTATTTGAAAATAAATA
3588546 TGTATTTGAAAATAAAT
1 TGTATTTGAAAATAAAT
3588563 GTTGTTTTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (18 bp):
TGTATTTGAAAATAAATA
Found at i:3600156 original size:25 final size:23
Alignment explanation
Indices: 3600116--3600165 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
3600106 ATTTTTATTT
3600116 TTATTTTTAAAATATTTAAA-ATA
1 TTATTTTTAAAATA-TTAAACATA
*
3600139 TTATATTTTAATATTATTAAACATA
1 TTAT-TTTTAA-AATATTAAACATA
3600164 TT
1 TT
3600166 TAATTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 4 0.17
24 11 0.48
25 8 0.35
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
TTATTTTTAAAATATTAAACATA
Found at i:3600181 original size:33 final size:29
Alignment explanation
Indices: 3600109--3600181 Score: 76
Period size: 34 Copynumber: 2.3 Consensus size: 29
3600099 TGATAATATT
3600109 TTTATTTTT-ATTTTTAAAATATTTAAAA
1 TTTATTTTTAATTTTTAAAATATTTAAAA
*
3600137 TATTATATTTTAATATTATTAAACATATTTAATTA
1 T-TTAT-TTTTAAT-TT-TTAAA-ATATTTAA-AA
3600172 TTTATTTTTA
1 TTTATTTTTA
3600182 GTAATATAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
28 1 0.03
29 4 0.11
30 4 0.11
31 2 0.05
32 2 0.05
33 10 0.27
34 12 0.32
35 2 0.05
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (29 bp):
TTTATTTTTAATTTTTAAAATATTTAAAA
Found at i:3600215 original size:22 final size:22
Alignment explanation
Indices: 3600190--3600233 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
3600180 TAGTAATATA
3600190 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
3600212 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
3600234 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:3600807 original size:18 final size:17
Alignment explanation
Indices: 3600784--3600817 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3600774 TTTTGAATTT
3600784 TATTATTTATTTAATATA
1 TATTA-TTATTTAATATA
*
3600802 TATTATTATTTTATAT
1 TATTATTATTTAATAT
3600818 TAAAATTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TATTATTATTTAATATA
Found at i:3600877 original size:10 final size:11
Alignment explanation
Indices: 3600862--3600898 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
3600852 AAATCCATTA
3600862 TATTATATAT-
1 TATTATATATG
3600872 TATTATAT-TG
1 TATTATATATG
*
3600882 TTTTATATATG
1 TATTATATATG
3600893 TATTAT
1 TATTAT
3600899 TTATATTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
9 1 0.04
10 15 0.65
11 7 0.30
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (11 bp):
TATTATATATG
Found at i:3600889 original size:25 final size:26
Alignment explanation
Indices: 3600858--3600915 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
3600848 TGGAAAATCC
3600858 ATTATATTATATATTA-TTATATTGT
1 ATTATATTATATATTATTTATATTGT
* *
3600883 TTTATA-TATGTATTATTTATATTGT
1 ATTATATTATATATTATTTATATTGT
3600908 ATTA-ATTA
1 ATTATATTA
3600916 AAATATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.60
Consensus pattern (26 bp):
ATTATATTATATATTATTTATATTGT
Found at i:3600910 original size:14 final size:15
Alignment explanation
Indices: 3600883--3600911 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
3600873 ATTATATTGT
3600883 TTTATATATGTATTA
1 TTTATATATGTATTA
3600898 TTTATAT-TGTATTA
1 TTTATATATGTATTA
3600912 ATTAAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTATATATGTATTA
Found at i:3607157 original size:47 final size:46
Alignment explanation
Indices: 3607040--3607212 Score: 187
Period size: 45 Copynumber: 3.8 Consensus size: 46
3607030 GGATGGTTGA
*
3607040 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAT
* *
3607087 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA-T
* * *
3607130 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGC-AAT
*
3607180 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
3607213 TAGGGGCGGG
Statistics
Matches: 108, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
44 2 0.02
45 30 0.28
46 29 0.27
47 30 0.28
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAT
Found at i:3607208 original size:46 final size:45
Alignment explanation
Indices: 3607044--3607214 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
3607034 GGTTGAGCAT
* *
3607044 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
* * *
3607089 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC---GC
*
3607134 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
*
3607182 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
3607215 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
42 6 0.06
44 2 0.02
45 29 0.27
46 31 0.29
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:3607475 original size:19 final size:20
Alignment explanation
Indices: 3607438--3607475 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
3607428 ATAAGGTGGT
3607438 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
3607458 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
3607476 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:3614636 original size:46 final size:46
Alignment explanation
Indices: 3614586--3614758 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
3614576 TGGTTGAGCA
* *
3614586 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
3614632 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* * *
3614679 TCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
3614725 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
3614759 GGGGCAGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:3614742 original size:93 final size:93
Alignment explanation
Indices: 3614583--3614753 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
3614573 GGATGGTTGA
* *
3614583 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
3614648 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * ** *
3614676 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
3614741 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
3614754 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:3615017 original size:19 final size:20
Alignment explanation
Indices: 3614980--3615017 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
3614970 ATAAGGTGGT
3614980 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
3615000 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
3615018 TAGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:3624436 original size:37 final size:38
Alignment explanation
Indices: 3624374--3624448 Score: 116
Period size: 37 Copynumber: 2.0 Consensus size: 38
3624364 ATGTATGGCA
* *
3624374 TTATCATACTTAAAACAAACTATCAGATTTATAGTTTT
1 TTATCATACTTAAAACAAACTATCAGATTCACAGTTTT
*
3624412 TTATCATACTT-AAACAGACTATCAGATTCACAGTTTT
1 TTATCATACTTAAAACAAACTATCAGATTCACAGTTTT
3624449 AGGGTTTGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 23 0.68
38 11 0.32
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.40
Consensus pattern (38 bp):
TTATCATACTTAAAACAAACTATCAGATTCACAGTTTT
Found at i:3628024 original size:83 final size:85
Alignment explanation
Indices: 3627875--3628120 Score: 345
Period size: 83 Copynumber: 2.9 Consensus size: 85
3627865 TTGTCCGTTT
* *
3627875 TCTTTTCAAATTGATCAATTTTAGTACCTAT-CTTTTAGCATTTTAAATTTTAATCTTGACTGGG
1 TCTTTTCAAATTGATCAATTTTAGT-CCTATACTTTTAGAATTTTAAATTTTAATCTTGACTTGG
**
3627939 TAACGGTTAAATTGTCCAATA
65 TAACAATTAAATTGTCCAATA
*
3627960 T-TTTTGAAATTGATCAA-TTTAGTCCTATACTTTTAGAATTTTAAATTTTAATCTTGACTTGGT
1 TCTTTTCAAATTGATCAATTTTAGTCCTATACTTTTAGAATTTTAAATTTTAATCTTGACTTGGT
* *
3628023 AACAATTAAATTGTCCATTT
66 AACAATTAAATTGTCCAATA
** * *
3628043 TCTTTTCAAATTGATCAATTTTAGTCTCTGCATTTTTAGAATTTTAAATTTTAATCTTAACTTGG
1 TCTTTTCAAATTGATCAATTTTAGTC-CTATACTTTTAGAATTTTAAATTTTAATCTTGACTTGG
*
3628108 TAACACTTAAATT
65 TAACAATTAAATT
3628121 CGTTTAATTA
Statistics
Matches: 144, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
82 5 0.03
83 55 0.38
84 30 0.21
85 8 0.06
86 46 0.32
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (85 bp):
TCTTTTCAAATTGATCAATTTTAGTCCTATACTTTTAGAATTTTAAATTTTAATCTTGACTTGGT
AACAATTAAATTGTCCAATA
Found at i:3633042 original size:21 final size:22
Alignment explanation
Indices: 3633000--3633044 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
3632990 TATTCAAACA
* *
3633000 AGCGATACTCCATAGCAGGTAG
1 AGCGATACTCCAAAACAGGTAG
*
3633022 AGCG-TACTCCAAAACATGTAG
1 AGCGATACTCCAAAACAGGTAG
3633043 AG
1 AG
3633045 TTTGAGCAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (22 bp):
AGCGATACTCCAAAACAGGTAG
Found at i:3637986 original size:18 final size:18
Alignment explanation
Indices: 3637965--3638015 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
3637955 TTTTCTTCTC
*
3637965 CTCATTATTATTCT-CATT
1 CTCATTATTATTATAC-TT
*
3637983 CTCATCATTATTATACTT
1 CTCATTATTATTATACTT
*
3638001 CTTATTATTATTATA
1 CTCATTATTATTATA
3638016 GTAGAGAGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.00, T:0.55
Consensus pattern (18 bp):
CTCATTATTATTATACTT
Found at i:3639022 original size:87 final size:87
Alignment explanation
Indices: 3638871--3639038 Score: 205
Period size: 87 Copynumber: 1.9 Consensus size: 87
3638861 TACTCGATAT
* * * * * * *
3638871 TGCAGATTGCGATATGTGATGTTTTGCTTTGGACTTTGTCTTAATGAAATTGGTATGCATATGGT
1 TGCAGAATGCGATATATGATGTTTTGCTTTGGACTCTGCCTTAACGAAATAGGTATGCAAATGGT
3638936 CTCACTTT-TATATATATCGTAC
66 CTCA-TTTCTATATATATCGTAC
* * *
3638958 TGCAGAATGCGATATATGATGTTTTG-TTTGGAACTCTGCCTTTACGGAATAGGTATGGAAATGG
1 TGCAGAATGCGATATATGATGTTTTGCTTTGG-ACTCTGCCTTAACGAAATAGGTATGCAAATGG
*
3639022 TCTTATTTCTATATATA
65 TCTCATTTCTATATATA
3639039 CCGAAGCATA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
86 8 0.12
87 60 0.88
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (87 bp):
TGCAGAATGCGATATATGATGTTTTGCTTTGGACTCTGCCTTAACGAAATAGGTATGCAAATGGT
CTCATTTCTATATATATCGTAC
Found at i:3642243 original size:7 final size:7
Alignment explanation
Indices: 3642231--3642260 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
3642221 TTTATGATTT
3642231 TTTTATA
1 TTTTATA
3642238 TTTTATA
1 TTTTATA
3642245 TTTTATA
1 TTTTATA
3642252 TTTTTATA
1 -TTTTATA
3642260 T
1 T
3642261 AAATAGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTATA
Found at i:3642250 original size:14 final size:15
Alignment explanation
Indices: 3642231--3642260 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3642221 TTTATGATTT
3642231 TTTTATA-TTTTATA
1 TTTTATATTTTTATA
3642245 TTTTATATTTTTATA
1 TTTTATATTTTTATA
3642260 T
1 T
3642261 AAATAGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTATATTTTTATA
Found at i:3642260 original size:8 final size:8
Alignment explanation
Indices: 3642211--3642260 Score: 57
Period size: 9 Copynumber: 6.0 Consensus size: 8
3642201 AAAAAAGAAA
3642211 TTTTATAAT
1 TTTTAT-AT
3642220 TTTTATGAT
1 TTTTAT-AT
*
3642229 TTTTTTAT
1 TTTTATAT
3642237 ATTTTATA-
1 -TTTTATAT
3642245 TTTTATAT
1 TTTTATAT
3642253 TTTTATAT
1 TTTTATAT
3642261 AAATAGATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
7 7 0.19
8 10 0.28
9 19 0.53
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (8 bp):
TTTTATAT
Found at i:3649522 original size:31 final size:31
Alignment explanation
Indices: 3649487--3649548 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
3649477 TGCATGATAC
3649487 TTGCCTATGTATGTATTATGCAGATGAATAT
1 TTGCCTATGTATGTATTATGCAGATGAATAT
3649518 TTGCCTATGTATGTATTATGCAGATGAATAT
1 TTGCCTATGTATGTATTATGCAGATGAATAT
3649549 ATGAAGTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (31 bp):
TTGCCTATGTATGTATTATGCAGATGAATAT
Found at i:3660899 original size:24 final size:25
Alignment explanation
Indices: 3660872--3660925 Score: 74
Period size: 28 Copynumber: 2.1 Consensus size: 25
3660862 CATTTTATAT
3660872 TTACCT-TTGGAATATAGGTCTAAA
1 TTACCTATTGGAATATAGGTCTAAA
3660896 TTACCTAAGCTTGGAATATAGGTCTAAA
1 TTACCT-A--TTGGAATATAGGTCTAAA
3660924 TT
1 TT
3660926 TACTTAGGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 6 0.23
28 20 0.77
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (25 bp):
TTACCTATTGGAATATAGGTCTAAA
Found at i:3661001 original size:21 final size:20
Alignment explanation
Indices: 3660963--3661008 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
3660953 GGTTAGCCTA
3660963 TTTT-AAATTTATCCATATCAT
1 TTTTAAAATTTATCCATAT--T
*
3660984 TTTTAAAATTTAT-TATATT
1 TTTTAAAATTTATCCATATT
3661003 TTTTAA
1 TTTTAA
3661009 TTTTAATTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
21 8 0.35
22 8 0.35
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTAAAATTTATCCATATT
Found at i:3663445 original size:28 final size:28
Alignment explanation
Indices: 3663413--3663469 Score: 71
Period size: 31 Copynumber: 2.0 Consensus size: 28
3663403 AACTTTTATC
3663413 AAAT-ACAAATACCACATTAGATAAAAAA
1 AAATAACAAATACCACATTAGA-AAAAAA
*
3663441 AAATAACACAAATACTACATTAGAAAAAA
1 AAAT-A-ACAAATACCACATTAGAAAAAA
3663470 GTGTCAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 4 0.16
30 5 0.20
31 16 0.64
ACGTcount: A:0.65, C:0.14, G:0.04, T:0.18
Consensus pattern (28 bp):
AAATAACAAATACCACATTAGAAAAAAA
Found at i:3664640 original size:28 final size:28
Alignment explanation
Indices: 3664608--3664662 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
3664598 CAAGGCTGAC
3664608 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
3664636 TTTTAATTTACTTGTTTAATTTCAATC
1 TTTTAATCTACTTGTTTAATTTCAATC
3664663 ATTTACTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 14 0.58
29 6 0.25
30 4 0.17
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:3671051 original size:21 final size:22
Alignment explanation
Indices: 3671025--3671083 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
3671015 GTTTTAAGAA
*
3671025 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
3671046 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
3671068 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
3671084 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:3671098 original size:26 final size:24
Alignment explanation
Indices: 3671054--3671103 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
3671044 ATTTGTTTTA
*
3671054 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
3671078 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
3671104 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:3674039 original size:28 final size:28
Alignment explanation
Indices: 3674007--3674061 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
3673997 CAAGGCTGAC
3674007 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
3674035 TTTTAATTTACTTGTTTAATTTCAATC
1 TTTTAATCTACTTGTTTAATTTCAATC
3674062 ATTTACTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 14 0.58
29 6 0.25
30 4 0.17
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:3681299 original size:7 final size:7
Alignment explanation
Indices: 3681250--3681279 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
3681240 AATGATGGGC
3681250 AAGTTTG
1 AAGTTTG
3681257 AAGTTTG
1 AAGTTTG
3681264 AAGTTTG
1 AAGTTTG
*
3681271 AATTTTG
1 AAGTTTG
3681278 AA
1 AA
3681280 TTTATGCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.43
Consensus pattern (7 bp):
AAGTTTG
Found at i:3687465 original size:18 final size:19
Alignment explanation
Indices: 3687432--3687470 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
3687422 AAATAATAAG
* *
3687432 AAAAGAAAATATAAAG-GA
1 AAAAGAAAAAAAAAAGAGA
3687450 AAAAGAAAAAAAAAAGAGA
1 AAAAGAAAAAAAAAAGAGA
3687469 AA
1 AA
3687471 GTTAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.05
Consensus pattern (19 bp):
AAAAGAAAAAAAAAAGAGA
Found at i:3689156 original size:21 final size:21
Alignment explanation
Indices: 3689118--3689162 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
3689108 TTATGTTAGA
* * *
3689118 AGATAAGTATATGTTTAAAAT
1 AGATAAGCATAGGGTTAAAAT
*
3689139 AGATAAGCATAGGGTTAAGAT
1 AGATAAGCATAGGGTTAAAAT
3689160 AGA
1 AGA
3689163 GTTTGTCACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.29
Consensus pattern (21 bp):
AGATAAGCATAGGGTTAAAAT
Found at i:3691751 original size:7 final size:7
Alignment explanation
Indices: 3691741--3691768 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
3691731 TAAAAATGAA
3691741 AATATTT
1 AATATTT
3691748 AATATTT
1 AATATTT
3691755 AATATTT
1 AATATTT
3691762 AATATTT
1 AATATTT
3691769 TAAATGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
AATATTT
Found at i:3691802 original size:20 final size:21
Alignment explanation
Indices: 3691757--3691806 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
3691747 TAATATTTAA
3691757 TATTTAATATTTTAAATGTTT
1 TATTTAATATTTTAAATGTTT
* *
3691778 T-TTTATTATTTT-AATTTTT
1 TATTTAATATTTTAAATGTTT
3691797 TATTTAATAT
1 TATTTAATAT
3691807 AAAATTTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 7 0.28
20 17 0.68
21 1 0.04
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (21 bp):
TATTTAATATTTTAAATGTTT
Found at i:3692632 original size:17 final size:18
Alignment explanation
Indices: 3692606--3692639 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
3692596 TAAAACTAGA
3692606 ATACCAAATAAA-TTATT
1 ATACCAAATAAAGTTATT
*
3692623 ATACCTAATAAAGTTAT
1 ATACCAAATAAAGTTAT
3692640 AATTTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.35
Consensus pattern (18 bp):
ATACCAAATAAAGTTATT
Found at i:3696525 original size:21 final size:21
Alignment explanation
Indices: 3696499--3696552 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
3696489 AATAGCGGTG
* *
3696499 ACGGTGAGATTAGTTATTGTA
1 ACGGTGAGATTAGATAATGTA
3696520 ACGGTGAGATTAGATAATGTA
1 ACGGTGAGATTAGATAATGTA
*
3696541 ACAGTGAGATTA
1 ACGGTGAGATTA
3696553 AAAACAATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (21 bp):
ACGGTGAGATTAGATAATGTA
Found at i:3703279 original size:171 final size:171
Alignment explanation
Indices: 3702978--3703312 Score: 553
Period size: 171 Copynumber: 2.0 Consensus size: 171
3702968 ATCTTTCTCT
*
3702978 TGTACATCATCTGGTTTCTCTTCATCAATGGCAATGTCTAGACCCTACTGAAAAAGGGCATCTAG
1 TGTACATCATCTGGTTTCTCTTAATCAATGGCAATGTCTAGACCCTACTGAAAAAGGGCATCTAG
** * *
3703043 AACCTCACTTTGCCACATACCAAAATGACTTGTGCCATCAAAGATCTCTACGGCCAATCTTGCAT
66 AACCTCACTTTGCCACATACCAAAATGACCCGTGCCATCAAAGATCTCCACAGCCAATCTTGCAT
*
3703108 TTGCAATTGTCAGTCTTGTCCACATGGACGATGTAGTATCA
131 TTGCAATTGTCAGTCTTGTCCACATGAACGATGTAGTATCA
* * * *
3703149 TGTACATCATCTGGTTTCTTTTAATTAATGGCAATGTCTAGACCTTGCTGAAAAAGGGCATCTAG
1 TGTACATCATCTGGTTTCTCTTAATCAATGGCAATGTCTAGACCCTACTGAAAAAGGGCATCTAG
* *
3703214 AACCTCACTTTGCCACATACCAAAATGACCCGTGCCATCAAAGATCTCCACAGCGAATTTTGCAT
66 AACCTCACTTTGCCACATACCAAAATGACCCGTGCCATCAAAGATCTCCACAGCCAATCTTGCAT
*
3703279 TTGCAATTGTCGGTCTTGTCCACATGAACGATGT
131 TTGCAATTGTCAGTCTTGTCCACATGAACGATGT
3703313 TGAAGCTCCT
Statistics
Matches: 151, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
171 151 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (171 bp):
TGTACATCATCTGGTTTCTCTTAATCAATGGCAATGTCTAGACCCTACTGAAAAAGGGCATCTAG
AACCTCACTTTGCCACATACCAAAATGACCCGTGCCATCAAAGATCTCCACAGCCAATCTTGCAT
TTGCAATTGTCAGTCTTGTCCACATGAACGATGTAGTATCA
Found at i:3711626 original size:17 final size:17
Alignment explanation
Indices: 3711585--3711627 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
3711575 CAAAACCTAT
*
3711585 AAAAGTTATAAGTAACC
1 AAAAGTTTTAAGTAACC
3711602 AAAAGTTTTAAGTAACC
1 AAAAGTTTTAAGTAACC
*
3711619 AGAAGTTTT
1 AAAAGTTTT
3711628 GTCAATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (17 bp):
AAAAGTTTTAAGTAACC
Found at i:3711814 original size:18 final size:18
Alignment explanation
Indices: 3711791--3711828 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
3711781 GATCGTAAAA
3711791 TTTGTCAAAGTCGCGGAT
1 TTTGTCAAAGTCGCGGAT
3711809 TTTGTCAAAGTCGCGGAT
1 TTTGTCAAAGTCGCGGAT
3711827 TT
1 TT
3711829 GACTTAGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (18 bp):
TTTGTCAAAGTCGCGGAT
Found at i:3712411 original size:14 final size:14
Alignment explanation
Indices: 3712392--3712418 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
3712382 AAAAATTCGA
3712392 AATAAAATAATAAT
1 AATAAAATAATAAT
3712406 AATAAAATAATAA
1 AATAAAATAATAA
3712419 GAGCTAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAAAATAATAAT
Found at i:3714404 original size:17 final size:17
Alignment explanation
Indices: 3714382--3714415 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
3714372 TGAAACCTTC
3714382 ACCAATTTATCATAAGT
1 ACCAATTTATCATAAGT
*
3714399 ACCAATTTTTCATAAGT
1 ACCAATTTATCATAAGT
3714416 TTATTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.38
Consensus pattern (17 bp):
ACCAATTTATCATAAGT
Found at i:3744431 original size:87 final size:87
Alignment explanation
Indices: 3744034--3745144 Score: 1228
Period size: 86 Copynumber: 12.9 Consensus size: 87
3744024 AGAATCAGTG
* * ** * * ** *
3744034 AATTTGCAGATCTTATCTTCCTAAGCAGTAGGGAAACAAATCGAGGTTGATGGGCCTTAAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
* * **
3744099 TAAGAAGTAGGGTAACAGACCG
66 TAAGCAGTAGGGTAACAGGCTA
* *** * * * *
3744121 AA-TTGCAGATCTTATTTCCCTAAGCAGTAGTGG-AGCAGATCGAAAATGAAGGGTCTTAAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAACCC
** *
3744184 CTAAGCAGTAGGGTAACAAACCA
65 CTAAGCAGTAGGGTAACAGGCTA
* * * * *
3744207 AA-TTACAGATCTTATCTCCCTAAGCAGTA-GTAGAGCAGATCGAAGACGAAGGGTCTTAAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGA-AACAGATCGAAGACGAAGGGCCTTAAACCC
* *
3744270 CTAAGCAGTAGGGTAACAGACCA
65 CTAAGCAGTAGGGTAACAGGCTA
* * * * *
3744293 AA-TTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCAAAGACGAAGGGCCTTAAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAACCC
3744356 CTAAGCAGTAGGGTAACAGGCTA
65 CTAAGCAGTAGGGTAACAGGCTA
* *
3744379 AATTTCCAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
* * *
3744444 TAAGTAGTAGGGTAACAGACCA
66 TAAGCAGTAGGGTAACAGGCTA
* * * * *
3744466 AATTGT--AGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAAACGAAGGGTCTTAAACC
1 AATT-TACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAACC
*
3744528 CCTAAGCAGTAGGGTAACAGGCTG
64 CCTAAGCAGTAGGGTAACAGGCTA
* * * *
3744552 AATTTACAGATCTTATCCCCCTAAGCAGTAGTGG-AGCAGATCGAA-AGCG-ATGGCCTTAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGA-CGAAGGGCCTTAAACC
* *
3744614 CCTAAGCAGTAGGGTAGCAGGTTA
64 CCTAAGCAGTAGGGTAACAGGCTA
* * *
3744638 AATTTACAGATCTTAACCCCCTAAGTAGTAGGGAAACAGATCGAAGATGATGGGCCTTAAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
* *
3744703 TAAGCAGTAGGGTAACAGGTTG
66 TAAGCAGTAGGGTAACAGGCTA
* * *
3744725 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAATAGATCGAAGATGATGGGCCTTAAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
*
3744790 TAAGCAGTAGGGTAACAGGCTG
66 TAAGCAGTAGGGTAACAGGCTA
* * *
3744812 AATTTACAGATCTTAACCCCCTAAGTAGTAGGGAAACAGATCAAAGACGATA-AGCCTTAAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGCCTTAAACCC
3744876 CTAAGCAGTAGGGTAACAGGCTA
65 CTAAGCAGTAGGGTAACAGGCTA
* ** *
3744899 AATTTACAG------A--CCCTAAACAGTA-GGAAACAGATCGAAGGTGACA-AGCCTTAAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGCCTTAAACCC
3744954 CTAAGCAGTAGGGTAACAGGCTGA
65 CTAAGCAGTAGGGTAACAGGCT-A
** *
3744978 AGATTTACAGATCTTAAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGACA-AGCCTT-AAC
1 A-ATTTACAGATCTT-AACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGCCTTAAAC
**
3745041 CCCTAAATAGTAGGGTAACAGGCTA
63 CCCTAAGCAGTAGGGTAACAGGCTA
* * * *
3745066 AATTTACAGATCTTAACACCCTAAGCAGTAGGGAAACAGATCGAAGACGATGAGCCTTAAACCCT
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
3745131 TAAGCAGTAGGGTA
66 TAAGCAGTAGGGTA
3745145 CCAAGCTGAA
Statistics
Matches: 911, Mismatches: 83, Indels: 60
0.86 0.08 0.06
Matches are distributed among these distances:
78 51 0.06
79 12 0.01
80 8 0.01
81 1 0.00
84 1 0.00
85 3 0.00
86 411 0.45
87 357 0.39
88 4 0.00
89 36 0.04
90 27 0.03
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (87 bp):
AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
TAAGCAGTAGGGTAACAGGCTA
Found at i:3744463 original size:173 final size:173
Alignment explanation
Indices: 3744034--3745144 Score: 1206
Period size: 173 Copynumber: 6.5 Consensus size: 173
3744024 AGAATCAGTG
* * ** * * ** *
3744034 AATTTGCAGATCTTATCTTCCTAAGCAGTAGGGAAACAAATCGAGGTTGATGGGCCTTAAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
* * * *** *
3744099 TAAGAAGTAGGGTAACAGACCGAATTGCAGATCTTATTTCCCTAAGCAGTAGTGG-AGCAGATCG
66 TAAGCAGTAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATC-
* * ** *
3744163 AAA-ATGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAAACCA
129 AAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA
* * * * *
3744207 AA-TTACAGATCTTATCTCCCTAAGCAGTA-GTAGAGCAGATCGAAGACGAAGGGTCTTAAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGA-AACAGATCGAAGACGAAGGGCCTTAAACCC
* * * *
3744270 CTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATC
65 CTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATC
3744334 AAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA
129 AAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA
* *
3744379 AATTTCCAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
* ** * * *
3744444 TAAGTAGTAGGGTAACAGACCAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCG
66 TAAGCAGTAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATC-
* *
3744508 AAA-ACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGGCTG
129 AAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA
* * * *
3744552 AATTTACAGATCTTATCCCCCTAAGCAGTAGTGG-AGCAGATCGAA-AGCG-ATGGCCTTAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGA-CGAAGGGCCTTAAACC
* *** *
3744614 CCTAAGCAGTAGGGTAGCAGGTTAAATTTACAGATCTTAACCCCCTAAGTAGTAGGGAAACAGAT
64 CCTAAGCAGTAGGGTAACAGACCAAA-TTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGAT
* * * * *
3744679 CGAAGATGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGTTG
128 CAAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA
* * *
3744725 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAATAGATCGAAGATGATGGGCCTTAAACCCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
* * * *
3744790 TAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGTAGTAGGGAAACAGATCA
66 TAAGCAGTAGGGTAACAGAC-CAAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCA
*
3744855 AAGACGATA-AGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA
130 AAGACGA-AGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA
* ** *
3744899 AATTTACAG------A--CCCTAAACAGTA-GGAAACAGATCGAAGGTGACA-AGCCTTAAACCC
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGCCTTAAACCC
* *
3744954 CTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAAACCCCCTAAGCAGTAGGGAAACAG
65 CTAAGCAGTAGGGTAACAGAC-CAA-A-TTACAGATCTT-AACCCCCTAAGCAGTAGGGAAACAG
* ** * **
3745019 ATCGAAGGTGACA-AGCCTT-AACCCCTAAATAGTAGGGTAACAGGCTA
126 ATCAAAGACGA-AGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA
* * * *
3745066 AATTTACAGATCTTAACACCCTAAGCAGTAGGGAAACAGATCGAAGACGATGAGCCTTAAACCCT
1 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
3745131 TAAGCAGTAGGGTA
66 TAAGCAGTAGGGTA
3745145 CCAAGCTGAA
Statistics
Matches: 825, Mismatches: 84, Indels: 55
0.86 0.09 0.06
Matches are distributed among these distances:
165 53 0.06
166 11 0.01
167 46 0.06
168 40 0.05
171 5 0.01
172 185 0.22
173 305 0.37
174 124 0.15
175 13 0.02
176 43 0.05
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (173 bp):
AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCC
TAAGCAGTAGGGTAACAGACCAAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAA
AGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTA
Found at i:3744800 original size:44 final size:44
Alignment explanation
Indices: 3744053--3745142 Score: 392
Period size: 44 Copynumber: 25.3 Consensus size: 44
3744043 ATCTTATCTT
* * * *
3744053 CCTAAGCAGTAGGGAAACAAATCGAGGTTGATGGGCCTTAAACC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAACC
* * * * * ** ***
3744097 CCTAAGAAGTAGGGTAACAGACCGAA-TTG-CAGATCTTATTTC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAACC
* * *
3744139 CCTAAGCAGTAGTGG-AGCAGATCGAAAATGA-AGGGTCTTAAACC
1 CCTAAGCAGTAG-GGAAACAGATCGAAGATGATA-GGCCTTAAACC
* * * * * ** *
3744183 CCTAAGCAGTAGGGTAACA-AACCAA-ATTACAGATCTT-ATCTC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAAC-C
* * * *
3744225 CCTAAGCAGTA-GTAGAGCAGATCGAAGACGA-AGGGTCTTAAACC
1 CCTAAGCAGTAGGGA-AACAGATCGAAGATGATA-GGCCTTAAACC
* * * ** *
3744269 CCTAAGCAGTAGGGTAACAGA-CCAA-ATTG-CAGATCTT-ATCTC
1 CCTAAGCAGTAGGGAAACAGATCGAAGA-TGATAGGCCTTAAAC-C
* * *
3744311 CCTAAGCAGTAGTGG-AGCAGATCAAAGACGA-AGGGCCTTAAACC
1 CCTAAGCAGTAG-GGAAACAGATCGAAGATGATA-GGCCTTAAACC
* * * * ** *
3744355 CCTAAGCAGTAGGGTAACAG-GCTAA-AT-TTCCAGATCTTAACCC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGAT--AGGCCTTAAACC
* *
3744398 CCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGTCTTAAACC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATA-GGCCTTAAACC
* * * ** *
3744442 CCTAAGTAGTAGGGTAACAGA-CCAA-ATTG-TAGATCTT-ATCTC
1 CCTAAGCAGTAGGGAAACAGATCGAAGA-TGATAGGCCTTAAAC-C
* * * *
3744484 CCTAAGCAGTAGTGG-AGCAGATCGAAAACGA-AGGGTCTTAAACC
1 CCTAAGCAGTAG-GGAAACAGATCGAAGATGATA-GGCCTTAAACC
* * * * * ** **
3744528 CCTAAGCAGTAGGGTAACAG-GCTGAA-TTTACAGATCTTATCCC
1 CCTAAGCAGTAGGGAAACAGATC-GAAGATGATAGGCCTTAAACC
* * *
3744571 CCTAAGCAGTAGTGG-AGCAGATCGAA-AGCGAT-GGCCTTAACCC
1 CCTAAGCAGTAG-GGAAACAGATCGAAGA-TGATAGGCCTTAAACC
* * * * * * ** *
3744614 CCTAAGCAGTAGGGTAGCAGGT-TAA-ATTTACAGATCTTAACCC
1 CCTAAGCAGTAGGGAAACAGATCGAAGA-TGATAGGCCTTAAACC
* *
3744657 CCTAAGTAGTAGGGAAACAGATCGAAGATGATGGGCCTTAAACC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAACC
* * * * * * ** *
3744701 CCTAAGCAGTAGGGTAACAGGTTGAA-TTTACAGATCTTAACCC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAACC
* *
3744744 CCTAAGCAGTAGGGAAATAGATCGAAGATGATGGGCCTTAAACC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAACC
* * * * * ** *
3744788 CCTAAGCAGTAGGGTAACAG-GCTGAA-TTTACAGATCTTAACCC
1 CCTAAGCAGTAGGGAAACAGATC-GAAGATGATAGGCCTTAAACC
* * * *
3744831 CCTAAGTAGTAGGGAAACAGATCAAAGACGATAAGCCTTAAACC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAACC
* * * * *
3744875 CCTAAGCAGTAGGGTAACAG-GCTAA-AT-TTA---C--AGA-C
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAACC
* * * *
3744910 CCTAAACAGTA-GGAAACAGATCGAAGGTGACAAGCCTTAAACC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAACC
* * * * **
3744953 CCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAGATCTTAAACCC
1 CCTAAGCAGTAGGGAAACAGATC-GAAGA-TGATAGGCCTTAAA-CC
* * *
3744999 CCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTT-AACC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAACC
** * * * * * **
3745042 CCTAAATAGTAGGGTAACAG-GCTAA-ATTTACAGATCTT-AACAC
1 CCTAAGCAGTAGGGAAACAGATCGAAGA-TGATAGGCCTTAAAC-C
*
3745085 CCTAAGCAGTAGGGAAACAGATCGAAGACGAT-GAGCCTTAAACC
1 CCTAAGCAGTAGGGAAACAGATCGAAGATGATAG-GCCTTAAACC
*
3745129 CTTAAGCAGTAGGG
1 CCTAAGCAGTAGGG
3745143 TACCAAGCTG
Statistics
Matches: 767, Mismatches: 206, Indels: 146
0.69 0.18 0.13
Matches are distributed among these distances:
34 7 0.01
35 14 0.02
36 3 0.00
37 1 0.00
38 1 0.00
40 1 0.00
41 9 0.01
42 119 0.16
43 277 0.36
44 279 0.36
45 30 0.04
46 25 0.03
47 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (44 bp):
CCTAAGCAGTAGGGAAACAGATCGAAGATGATAGGCCTTAAACC
Found at i:3744960 original size:78 final size:80
Alignment explanation
Indices: 3744830--3745144 Score: 339
Period size: 78 Copynumber: 3.8 Consensus size: 80
3744820 GATCTTAACC
* * *
3744830 CCCTAAGTAGTAGGGAAACAGATCAAAGACGATAAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGACGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
3744895 GCTAAATTTACAG-A
66 GCTAAATTTACAGAA
* **
3744909 CCCTAAACAGTA-GGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGACGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
3744973 GCTGAAGATTTACAGATCTTAAA
66 GCT-AA-ATTTACAG------AA
** **
3744996 CCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTT-AACCCCTAAATAGTAGGGTAAC
1 --CCCTAAGCAGTAGGGAAACAGATCGAAGACGACAAGCCTTAAACCCCTAAGCAGTAGGGTAAC
3745060 AGGCTAAATTTACAGATCTTAACA
64 AGGCTAAATTTACAG------A-A
** *
3745084 CCCTAAGCAGTAGGGAAACAGATCGAAGACGATGAGCCTTAAACCCTTAAGCAGTAGGGTA
1 CCCTAAGCAGTAGGGAAACAGATCGAAGACGACAAGCCTTAAACCCCTAAGCAGTAGGGTA
3745145 CCAAGCTGAA
Statistics
Matches: 206, Mismatches: 16, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
78 51 0.25
79 12 0.06
80 8 0.04
86 36 0.17
87 33 0.16
88 3 0.01
89 36 0.17
90 27 0.13
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.18
Consensus pattern (80 bp):
CCCTAAGCAGTAGGGAAACAGATCGAAGACGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
GCTAAATTTACAGAA
Found at i:3745061 original size:43 final size:44
Alignment explanation
Indices: 3744909--3745142 Score: 167
Period size: 43 Copynumber: 5.3 Consensus size: 44
3744899 AATTTACAGA
3744909 CCCTAAACAGTA-GGAAACAGATCGAAGGTGACAAGCCTTAAAC
1 CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAC
* * * * * *
3744952 CCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTAC-AGATCTTAAACC
1 CCCTAAACAGTAGGGAAACAGATC-GAAG-GTGACAAG-CCTTAAA-C
*
3744998 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTT-AAC
1 CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAC
* * * * ** * *
3745041 CCCTAAATAGTAGGGTAACAG-GCTAAATTTAC-AGATCTT-AAC
1 CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAG-CCTTAAAC
* ** **
3745083 ACCCTAAGCAGTAGGGAAACAGATCGAAGACGATGAGCCTTAAAC
1 -CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAC
* *
3745128 CCTTAAGCAGTAGGG
1 CCCTAAACAGTAGGG
3745143 TACCAAGCTG
Statistics
Matches: 147, Mismatches: 32, Indels: 23
0.73 0.16 0.11
Matches are distributed among these distances:
41 2 0.01
42 12 0.08
43 49 0.33
44 36 0.24
45 20 0.14
46 27 0.18
47 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (44 bp):
CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAC
Found at i:3745706 original size:30 final size:30
Alignment explanation
Indices: 3745670--3745752 Score: 130
Period size: 30 Copynumber: 2.8 Consensus size: 30
3745660 ACCCTAGCCG
*
3745670 CCTTGCCTCCTACTTGCACCTACTCCACCA
1 CCTTGCCTCCCACTTGCACCTACTCCACCA
*
3745700 CCTTGCCTCCCACTTGCAACTACTCCACCA
1 CCTTGCCTCCCACTTGCACCTACTCCACCA
* *
3745730 CCTTGTCTCCCACTTCCACCTAC
1 CCTTGCCTCCCACTTGCACCTAC
3745753 ACCATCAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.17, C:0.51, G:0.06, T:0.27
Consensus pattern (30 bp):
CCTTGCCTCCCACTTGCACCTACTCCACCA
Found at i:3746324 original size:21 final size:21
Alignment explanation
Indices: 3746273--3746326 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
3746263 CATTTTACTA
3746273 TTAT-TTATAT-TATTATTAT
1 TTATATTATATATATTATTAT
* *
3746292 TTCTCA-TGTATATATTATTAT
1 TTAT-ATTATATATATTATTAT
3746313 TTATATTATATATA
1 TTATATTATATATA
3746327 CCTCTCTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
19 3 0.11
20 5 0.19
21 19 0.70
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (21 bp):
TTATATTATATATATTATTAT
Found at i:3746337 original size:33 final size:35
Alignment explanation
Indices: 3746271--3746342 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 35
3746261 ATCATTTTAC
** *
3746271 TATTATTTATATTATTATTATTTCTCATGTATATAT
1 TATTATTTATATTATTATTATACCTCATCTATAT-T
3746307 TATTATTTATATTA-TA-TATACCTC-TCTATATT
1 TATTATTTATATTATTATTATACCTCATCTATATT
3746339 TATT
1 TATT
3746343 TATATTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 5 0.15
33 6 0.18
34 6 0.18
35 2 0.06
36 14 0.42
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (35 bp):
TATTATTTATATTATTATTATACCTCATCTATATT
Found at i:3759083 original size:20 final size:20
Alignment explanation
Indices: 3759058--3759097 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
3759048 AACGAAAACC
*
3759058 ACAATATCAAATGACAGCAA
1 ACAATAACAAATGACAGCAA
* *
3759078 ACAATAACAGATTACAGCAA
1 ACAATAACAAATGACAGCAA
3759098 GGATTTTTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.20, G:0.10, T:0.15
Consensus pattern (20 bp):
ACAATAACAAATGACAGCAA
Found at i:3765922 original size:18 final size:19
Alignment explanation
Indices: 3765885--3765924 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
3765875 ATTTTCATTT
* *
3765885 TTATTTGTTACTGTTTATA
1 TTATTTGTTAATGTTAATA
3765904 TTATTTG-TAATGTTAATA
1 TTATTTGTTAATGTTAATA
3765922 TTA
1 TTA
3765925 ATGGTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.60
Consensus pattern (19 bp):
TTATTTGTTAATGTTAATA
Found at i:3766522 original size:17 final size:17
Alignment explanation
Indices: 3766500--3766535 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
3766490 TTAAATGATA
3766500 TTTTGACATATAATTAT
1 TTTTGACATATAATTAT
3766517 TTTTGACATATAATTAT
1 TTTTGACATATAATTAT
3766534 TT
1 TT
3766536 CTAACATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTTGACATATAATTAT
Found at i:3766542 original size:17 final size:17
Alignment explanation
Indices: 3766505--3766542 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
3766495 TGATATTTTG
* *
3766505 ACATATAATTATTTTTG
1 ACATATAATTATTTCTA
3766522 ACATATAATTATTTCTA
1 ACATATAATTATTTCTA
3766539 ACAT
1 ACAT
3766543 TTTTTTCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (17 bp):
ACATATAATTATTTCTA
Found at i:3779048 original size:64 final size:64
Alignment explanation
Indices: 3778938--3779063 Score: 200
Period size: 64 Copynumber: 2.0 Consensus size: 64
3778928 CTGCAAGTAT
* *
3778938 CATTTAGTTAGGAGTCTTTGATTCATTTCGATCATAGCACCCTAATTATTTGACATAAGCATCA
1 CATTTAGTTAGGAGTCTTTGATTCATTTCGATCATAACACCATAATTATTTGACATAAGCATCA
* *
3779002 CATTTAGTTAGGAG-CATTTGATTCATTTCGATCATAACATCATAATTATTTGGCATAAGCAT
1 CATTTAGTTAGGAGTC-TTTGATTCATTTCGATCATAACACCATAATTATTTGACATAAGCAT
3779064 GTGCATATAA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
63 1 0.02
64 56 0.98
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
CATTTAGTTAGGAGTCTTTGATTCATTTCGATCATAACACCATAATTATTTGACATAAGCATCA
Found at i:3779425 original size:177 final size:176
Alignment explanation
Indices: 3779128--3779819 Score: 705
Period size: 178 Copynumber: 3.9 Consensus size: 176
3779118 ATTGGTAAAG
*
3779128 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTTGCAGATGGTGAATCTTATCTC
1 ATTGAAGATTTTATCTCCCTGAAGTTGTAGCGGAGCAGATC---GCAGATGG-GAATCTTATCTC
* * * *
3779193 TATGTATCGGCAATGGAGCAGATTTAAGC-CTTAAGCCTTACCTCTCTGAGGTAGCAAGAGAGCA
62 CATGTATCGGCAATGGAGCAGATTTTAGCTATTAA-CCTTATCTCTCTGAGGTAGCAAGAGAGCA
* *
3779257 GGTTAAAGATTGAAGTCTTATCTTCTTGAGGTAGCAAGGAAGTAGACTGA-A
126 GGTTAAAGATTG-AGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGA
* ** *
3779308 GATTGAAGATCTTATCTCCCT-AAGCAGTAGCGAAGCAGATCG-AGGATGGCGAATCTTATCTCC
1 -ATTGAAGATTTTATCTCCCTGAAGTTGTAGCGGAGCAGATCGCA-GATGG-GAATCTTATCTCC
* * *
3779371 ATGTATCGGTAATGGAGCAGATTTTAGCTATTGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGA
63 ATGTATCGGCAATGGAGCAGATTTTAGCTATTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGG
*** * * *
3779436 TTGGCGATTGAGTCTTATCTGCCTGATGTAGCAAGGAAGCAGATTGAGA
128 TTAAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGA
* * *
3779485 ATTGAAGATTTTATCTCCTTGAAGTTGTAGTGGAGCAAATCTTCGCAGAT-GGAATCTTATCTCC
1 ATTGAAGATTTTATCTCCCTGAAGTTGTAGCGGAGCAGA---TCGCAGATGGGAATCTTATCTCC
* * * *
3779549 ATGTATCGGCAATGGAGCAGATTTTA-CTACTAAACCTTATCTCTCTAAAGTAGCAAGAGAGTAG
63 ATGTATCGGCAATGGAGCAGATTTTAGCTA-TTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAG
* *
3779613 GTTAAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGGGA
127 GTTAAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGA
* * ** **
3779663 ATTAAAGATTTTATCTCCCTGAAGTTGCAGCGGAGC-GAAT--C---TTCG---CAGATCTCCAT
1 ATTGAAGATTTTATCTCCCTGAAGTTGTAGCGGAGCAG-ATCGCAGATGGGAATCTTATCTCCAT
* * * **** * * * *
3779719 GTATCGGCAATGGGGCAAATTTCA-CCGCCAGCCTCATCTCTTTGAGGTAACAAGAGAGCAGGTT
65 GTATCGGCAATGGAGCAGATTTTAGCTATTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* * *
3779783 AAAGAATGAGTCTTATCTTTCTGAAGTAGCAAGGAAG
130 AAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGGAAG
3779820 CAGACTGGAA
Statistics
Matches: 433, Mismatches: 67, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
167 63 0.15
168 31 0.07
170 1 0.00
171 1 0.00
173 1 0.00
175 1 0.00
176 51 0.12
177 97 0.22
178 144 0.33
179 1 0.00
180 22 0.05
181 20 0.05
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (176 bp):
ATTGAAGATTTTATCTCCCTGAAGTTGTAGCGGAGCAGATCGCAGATGGGAATCTTATCTCCATG
TATCGGCAATGGAGCAGATTTTAGCTATTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTA
AAGATTGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGA
Found at i:3779489 original size:43 final size:43
Alignment explanation
Indices: 3779406--3779489 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
3779396 AGCTATTGAC
*
3779406 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGGCGATTGAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGGCAATTGAGT
*
3779449 CTTATCTGC-CTGATGTAGCAAG-GAAGCAGATTGAG-AATTGA
1 CTTATCT-CTCTGAGGTAGCAAGAG-AGCAGATTG-GCAATTGA
3779490 AGATTTTATC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
42 1 0.03
43 33 0.92
44 2 0.06
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (43 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGGCAATTGAGT
Found at i:3779588 original size:178 final size:181
Alignment explanation
Indices: 3779128--3779712 Score: 735
Period size: 178 Copynumber: 3.3 Consensus size: 181
3779118 ATTGGTAAAG
* * *
3779128 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTTTGCAGATGGTGAATCTTATCTC
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAAATCTTCGCAGATGGCGAATCTTATCTC
* * * *
3779193 TATGTATCGGCAATGGAGCAGATTTAAGC--CTTAAGCCTTACCTCTCTGAGGTAGCAAGAGAGC
66 CATGTATCGGCAATGGAGCAGATTTTAGCTAC-TAAACCTTATCTCTCTGAGGTAGCAAGAGAGC
* *
3779256 AGGTTAAAGATTGAAGTCTTATCTTCTTGAGGTAGCAAGGAAGTAGACTGA-A
130 AGGTTAAAGATTG-AGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGA
* ** * * *
3779308 GATTGAAGATCTTATCTCCCT-AAGCAGTAGCGAAGCAGA---TCG-AGGATGGCGAATCTTATC
1 -ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAAATCTTCGCA-GATGGCGAATCTTATC
* **
3779368 TCCATGTATCGGTAATGGAGCAGATTTTAGCTA-TTGACCTTATCTCTCTGAGGTAGCAAGAGAG
64 TCCATGTATCGGCAATGGAGCAGATTTTAGCTACTAAACCTTATCTCTCTGAGGTAGCAAGAGAG
* *** * * *
3779432 CAGATTGGCGATTGAGTCTTATCTGCCTGATGTAGCAAGGAAGCAGATTGAGA
129 CAGGTTAAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGA
* * *
3779485 ATTGAAGATTTTATCTCCTTGAAGTTGTAGTGGAGCAAATCTTCGCAGAT-G-GAATCTTATCTC
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAAATCTTCGCAGATGGCGAATCTTATCTC
* * *
3779548 CATGTATCGGCAATGGAGCAGATTTTA-CTACTAAACCTTATCTCTCTAAAGTAGCAAGAGAGTA
66 CATGTATCGGCAATGGAGCAGATTTTAGCTACTAAACCTTATCTCTCTGAGGTAGCAAGAGAGCA
* *
3779612 GGTTAAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGGGA
131 GGTTAAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGA
* *
3779663 ATTAAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCGAATCTTCGCAGAT
1 ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAAATCTTCGCAGAT
3779713 CTCCATGTAT
Statistics
Matches: 344, Mismatches: 50, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
176 51 0.15
177 99 0.29
178 153 0.44
179 1 0.00
180 20 0.06
181 20 0.06
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (181 bp):
ATTGAAGATTTTATCTCCCTGAAGTTGCAGCGGAGCAAATCTTCGCAGATGGCGAATCTTATCTC
CATGTATCGGCAATGGAGCAGATTTTAGCTACTAAACCTTATCTCTCTGAGGTAGCAAGAGAGCA
GGTTAAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGAGA
Found at i:3783843 original size:18 final size:17
Alignment explanation
Indices: 3783822--3783860 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
3783812 GCAAACAGCG
3783822 AAAGAGGGCAGAAAAGCA
1 AAAGAGGGCAGAAAAG-A
* *
3783840 AAAGATGGCAGCAAAGA
1 AAAGAGGGCAGAAAAGA
3783857 AAAG
1 AAAG
3783861 GAAACAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.56, C:0.10, G:0.31, T:0.03
Consensus pattern (17 bp):
AAAGAGGGCAGAAAAGA
Found at i:3785178 original size:3 final size:3
Alignment explanation
Indices: 3785170--3785244 Score: 73
Period size: 3 Copynumber: 24.7 Consensus size: 3
3785160 TATGTATACG
* *
3785170 TTA TTA TTA TTA TTA TTA TTA CTT- TTA TTC TT- TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* *
3785214 TTA TTC TTA CTAA TGTA TTA TTA TTA TTA TT
1 TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TT
3785245 CCTATATTCT
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
2 4 0.07
3 50 0.83
4 6 0.10
ACGTcount: A:0.28, C:0.07, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:3785205 original size:26 final size:26
Alignment explanation
Indices: 3785176--3785273 Score: 83
Period size: 26 Copynumber: 3.7 Consensus size: 26
3785166 TACGTTATTA
* **
3785176 TTATTATTATTATTACTT-TTATTCTT
1 TTATTATTATTATTA-TTCTTACTAAT
*
3785202 TTATTACTATTATTATTCTTACTAAT
1 TTATTATTATTATTATTCTTACTAAT
* *
3785228 GTATTATTATTATTATTCCTATATTCTACT
1 TTATTATTATTATTATT-CT-TA--CTAAT
3785258 TTATTATTA-TATTATT
1 TTATTATTATTATTATT
3785274 ACTATTGCTA
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
25 2 0.03
26 34 0.58
27 2 0.03
28 2 0.03
29 7 0.12
30 12 0.20
ACGTcount: A:0.28, C:0.09, G:0.01, T:0.62
Consensus pattern (26 bp):
TTATTATTATTATTATTCTTACTAAT
Found at i:3785207 original size:20 final size:20
Alignment explanation
Indices: 3785171--3785221 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
3785161 ATGTATACGT
*
3785171 TATTATTATTATTATTATTAC
1 TATTATTATTCTT-TTATTAC
3785192 --TT-TTATTCTTTTATTAC
1 TATTATTATTCTTTTATTAC
3785209 TATTATTATTCTT
1 TATTATTATTCTT
3785222 ACTAATGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 7 0.27
18 7 0.27
19 4 0.15
20 8 0.31
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (20 bp):
TATTATTATTCTTTTATTAC
Found at i:3785378 original size:15 final size:15
Alignment explanation
Indices: 3785358--3785387 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
3785348 ATTTATTTAC
3785358 ATTATTATTACTATT
1 ATTATTATTACTATT
*
3785373 ATTATTATTTCTATT
1 ATTATTATTACTATT
3785388 TTTTTGATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTACTATT
Found at i:3786740 original size:22 final size:23
Alignment explanation
Indices: 3786692--3786740 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
3786682 GTTTTCTCAA
* *
3786692 ATTTCGTAGACCAAAATCGTTGT
1 ATTTAGTAAACCAAAATCGTTGT
*
3786715 -TTTAGTAAACCAAAAT-GTTTT
1 ATTTAGTAAACCAAAATCGTTGT
3786736 ATTTA
1 ATTTA
3786741 AACGACCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (23 bp):
ATTTAGTAAACCAAAATCGTTGT
Found at i:3787788 original size:19 final size:20
Alignment explanation
Indices: 3787753--3787793 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
3787743 TCGCTTCTCC
3787753 CACGCCCGTGCTTATTTGGA
1 CACGCCCGTGCTTATTTGGA
*
3787773 CACGCCCGTG-TTATTTTGA
1 CACGCCCGTGCTTATTTGGA
3787792 CA
1 CA
3787794 GTGTCGACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.17, C:0.29, G:0.22, T:0.32
Consensus pattern (20 bp):
CACGCCCGTGCTTATTTGGA
Found at i:3795836 original size:40 final size:39
Alignment explanation
Indices: 3795711--3795847 Score: 121
Period size: 35 Copynumber: 3.7 Consensus size: 39
3795701 GTTTTTGCTA
* * *
3795711 ATTGA-AATACCATACCTACATTTTACAACTCGGCATGG
1 ATTGATAATACCATACCTACATTTCACAACTCAGTATGG
** * **
3795749 ---GA-AATGTCATACCTACGTTTCTTAACTCAGTATGG
1 ATTGATAATACCATACCTACATTTCACAACTCAGTATGG
3795784 ATTTGATAATACCATACCTACATTTCACAACTCAGTATGG
1 A-TTGATAATACCATACCTACATTTCACAACTCAGTATGG
*
3795824 A-TG---ATACCATACCAACATTTCACA
1 ATTGATAATACCATACCTACATTTCACA
3795848 CTTTGCCATG
Statistics
Matches: 80, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
35 47 0.59
38 2 0.03
39 2 0.03
40 29 0.36
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (39 bp):
ATTGATAATACCATACCTACATTTCACAACTCAGTATGG
Found at i:3797095 original size:8 final size:8
Alignment explanation
Indices: 3797074--3797103 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
3797064 AAATTCTTTT
3797074 AATTCACTA
1 AATTCAC-A
3797083 AATTCACA
1 AATTCACA
3797091 AATTCACA
1 AATTCACA
3797099 AATTC
1 AATTC
3797104 TTCTAAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 14 0.67
9 7 0.33
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (8 bp):
AATTCACA
Found at i:3797766 original size:17 final size:17
Alignment explanation
Indices: 3797736--3797768 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3797726 AGTGGAAACA
3797736 TTTGCAACTCTGTTAAC
1 TTTGCAACTCTGTTAAC
3797753 TTTGCTAACT-TGTTAA
1 TTTGC-AACTCTGTTAA
3797769 AACAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.45
Consensus pattern (17 bp):
TTTGCAACTCTGTTAAC
Found at i:3799982 original size:3 final size:3
Alignment explanation
Indices: 3799952--3799993 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
3799942 TTTAGCAATT
* * *
3799952 TTA TT- TTA TTG TTA CTA TTA TCA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
3799994 ATCATTGTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:3800354 original size:21 final size:21
Alignment explanation
Indices: 3800324--3800365 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
3800314 ACGAATTTGC
3800324 GCTTTTATTT-ACATGTTACG
1 GCTTTTATTTCACATGTTACG
*
3800344 GCTTATTATTTCGCATGTTACG
1 GCTT-TTATTTCACATGTTACG
3800366 ATTTGTTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 6 0.32
22 9 0.47
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.48
Consensus pattern (21 bp):
GCTTTTATTTCACATGTTACG
Found at i:3812524 original size:46 final size:43
Alignment explanation
Indices: 3812457--3812828 Score: 259
Period size: 44 Copynumber: 8.6 Consensus size: 43
3812447 ATTATACAGG
* *
3812457 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A--TCAGA
* * ** *
3812503 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCCA-GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--ATCAGA
*
3812547 TCTTATCTCCCTGAGATTACAG-CGAGCAGATCAAAGAT-AGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATCAG--A
* * * * *
3812590 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG----GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATCAGA
* * * * *
3812629 TCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC--ACATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGATCAGA
* *
3812670 TCTTAT-TCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-A--TCAGA
* ** *
3812715 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAG--ATCAGA
* * *
3812759 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA-CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATCA-GA
*
3812802 TCCTATCTCCCTGA-AGTTACAGTGGAG
1 TCTTATCTCCCTGAGA-TTACAGTGGAG
3812829 TGGATTAAAA
Statistics
Matches: 257, Mismatches: 49, Indels: 43
0.74 0.14 0.12
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 24 0.09
40 19 0.07
41 12 0.05
42 4 0.02
43 56 0.22
44 72 0.28
45 10 0.04
46 56 0.22
47 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGATCAGA
Found at i:3812836 original size:212 final size:214
Alignment explanation
Indices: 3812453--3812918 Score: 690
Period size: 212 Copynumber: 2.2 Consensus size: 214
3812443 GTTTATTATA
3812453 CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTAT-TCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAG
3812518 GTTACAGCGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGAGCAGATCAAAG
65 GTTACAGCGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGAGCAGATCAAAG
* * *
3812583 ATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGA-T-TAAAGGATCTTATCTCTCTGAAGT
130 ACACTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTATAAAGGATCTTATCTCTCTGAAGT
*
3812646 TACAGTAGAGAAGATCACAT
195 TACAGCAGAGAAGATCACAT
3812666 CAGGTCTTATTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGG
1 CAGGTCTTATTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGG
* *
3812731 TTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG
66 TTACAGCGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGC-GAGCAGATCAAAG
* *
3812796 ACACT-ATCCTATCTCCCTGA-AGTTACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTG
130 ACACTAATCCTATCTCCCTGAGA-TTACAATGGAGCGGATT---ATAAAGGATCTTATCTCTCTG
* * * *
3812859 AGGTTACAGCAGAGTAGGTCGCAT
191 AAGTTACAGCAGAGAAGATCACAT
* * *
3812883 CAAGTCTTATTTCCCTGAAGA-TGCAGTGGAATAGAC
1 CAGGTCTTA-TTCCCTG-AGATTACAGTGGAACAGAC
3812919 TGAAAACAAC
Statistics
Matches: 229, Mismatches: 15, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
211 1 0.00
212 132 0.58
213 26 0.11
217 47 0.21
218 20 0.09
219 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (214 bp):
CAGGTCTTATTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGG
TTACAGCGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGAGCAGATCAAAGA
CACTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTATAAAGGATCTTATCTCTCTGAAGTT
ACAGCAGAGAAGATCACAT
Found at i:3814386 original size:20 final size:20
Alignment explanation
Indices: 3814361--3814403 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
3814351 TTGTTACTAT
*
3814361 TATCATTATTATTATTATTA
1 TATCATTATTATTATCATTA
* *
3814381 TATCATTGTTATTCTCATTA
1 TATCATTATTATTATCATTA
3814401 TAT
1 TAT
3814404 ATTTTCATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.58
Consensus pattern (20 bp):
TATCATTATTATTATCATTA
Found at i:3820300 original size:106 final size:107
Alignment explanation
Indices: 3820180--3820375 Score: 268
Period size: 107 Copynumber: 1.8 Consensus size: 107
3820170 ACGAAAGACA
*
3820180 GAAGACCTTAACGAGTA-AAAATAAAGTAAAAGCGGACATGACATGACCCAACAATCGGAGTTTT
1 GAAGACCTTAACGAGTAGAAAAAAAAGTAAAAGCGGACATGACATGACCCAACAATCGGAGTTTT
*
3820244 ACTTTTAATCCTGATATGTTAAAATAAAAAGTGAAAAGAAGC
66 ACTTTTAATCCTGATATGCTAAAATAAAAAGTGAAAAGAAGC
* * * * * * * * * *
3820286 GAAGACTTTGACGAGTAGAAAAAAAAGTAAAGGTGGGCATGAGATGACCCTATAATGGGTGTTTT
1 GAAGACCTTAACGAGTAGAAAAAAAAGTAAAAGCGGACATGACATGACCCAACAATCGGAGTTTT
*
3820351 GCTTTTAATCCTGATATGCTAAAAT
66 ACTTTTAATCCTGATATGCTAAAAT
3820376 TTTGGGTAGG
Statistics
Matches: 76, Mismatches: 13, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
106 15 0.20
107 61 0.80
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.26
Consensus pattern (107 bp):
GAAGACCTTAACGAGTAGAAAAAAAAGTAAAAGCGGACATGACATGACCCAACAATCGGAGTTTT
ACTTTTAATCCTGATATGCTAAAATAAAAAGTGAAAAGAAGC
Found at i:3821074 original size:49 final size:49
Alignment explanation
Indices: 3821001--3821098 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
3820991 TTATAGTTCT
*
3821001 AATCTTTTATACCTTAAAATATACACTCATTAACAAATTAGAACCCATA
1 AATCTTTTATACCTTAAAAAATACACTCATTAACAAATTAGAACCCATA
*
3821050 AATCTTTTATACCTTAAAAAATACACTCATTAACAAATTAGAACTCATA
1 AATCTTTTATACCTTAAAAAATACACTCATTAACAAATTAGAACCCATA
3821099 TATAATACTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.33
Consensus pattern (49 bp):
AATCTTTTATACCTTAAAAAATACACTCATTAACAAATTAGAACCCATA
Found at i:3823051 original size:35 final size:36
Alignment explanation
Indices: 3823012--3823079 Score: 120
Period size: 35 Copynumber: 1.9 Consensus size: 36
3823002 AATTAAATAT
*
3823012 AATACACAAGATAAACTT-CAAATATATAAATTTAA
1 AATACACAAGATAAACTTAAAAATATATAAATTTAA
3823047 AATACACAAGATAAACTTAAAAATATATAAATT
1 AATACACAAGATAAACTTAAAAATATATAAATT
3823080 AACAAATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 18 0.58
36 13 0.42
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (36 bp):
AATACACAAGATAAACTTAAAAATATATAAATTTAA
Found at i:3823086 original size:16 final size:16
Alignment explanation
Indices: 3823057--3823090 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
3823047 AATACACAAG
3823057 ATAAACTTAAAAATAT
1 ATAAACTTAAAAATAT
3823073 ATAAA-TTAACAAATAT
1 ATAAACTTAA-AAATAT
3823089 AT
1 AT
3823091 TGTAACCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAACTTAAAAATAT
Found at i:3823867 original size:9 final size:9
Alignment explanation
Indices: 3823839--3823869 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
3823829 ATATTAAATT
3823839 TTAATTTAA
1 TTAATTTAA
*
3823848 TCAATTTAA
1 TTAATTTAA
3823857 TTAATTTAA
1 TTAATTTAA
3823866 TTAA
1 TTAA
3823870 AAGTTAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (9 bp):
TTAATTTAA
Found at i:3824799 original size:6 final size:6
Alignment explanation
Indices: 3824788--3824830 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
3824778 ATCTATTTAA
** * *
3824788 TTAAAT TTAAAT TCCAAT TAAAAT CTAAAT TTAAAT TTAAAT T
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT T
3824831 AATTATCTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (6 bp):
TTAAAT
Found at i:3826789 original size:25 final size:23
Alignment explanation
Indices: 3826747--3826799 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
3826737 AAATTTATTT
*
3826747 TTATTATTAATTCTATTATTACTA
1 TTATTATTAATTCCATTATT-CTA
3826771 CTTATTATT-ATTGCCATTATTCTA
1 -TTATTATTAATT-CCATTATTCTA
3826795 TTATT
1 TTATT
3826800 TCTTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 6 0.23
25 15 0.58
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATTATTAATTCCATTATTCTA
Found at i:3828527 original size:16 final size:16
Alignment explanation
Indices: 3828506--3828539 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3828496 GGGTGCTAAT
*
3828506 CCTTCCTCGTACGTAA
1 CCTTCCTCGTAAGTAA
*
3828522 CCTTCCTTGTAAGTAA
1 CCTTCCTCGTAAGTAA
3828538 CC
1 CC
3828540 GACTCCCGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.32
Consensus pattern (16 bp):
CCTTCCTCGTAAGTAA
Found at i:3828746 original size:15 final size:16
Alignment explanation
Indices: 3828726--3828756 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
3828716 AATATCTATT
3828726 TATATAAA-AAATAAA
1 TATATAAATAAATAAA
3828741 TATATAAATAAATAAA
1 TATATAAATAAATAAA
3828757 AAGACCAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
TATATAAATAAATAAA
Found at i:3833023 original size:39 final size:39
Alignment explanation
Indices: 3832964--3833181 Score: 328
Period size: 39 Copynumber: 5.6 Consensus size: 39
3832954 TTCGTGATCT
** * *
3832964 GAAGCCCGAAGTTTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
3833003 GAAGCCCGGAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
3833042 GAAACCCAAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* * * *
3833081 GAAGCTCGAAGGCTGACTGAAGCGCAGAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
3833120 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
3833159 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
3833182 TCATCAGAGC
Statistics
Matches: 161, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 161 1.00
ACGTcount: A:0.37, C:0.23, G:0.27, T:0.12
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:3835695 original size:24 final size:24
Alignment explanation
Indices: 3835668--3835714 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
3835658 AAAAATAATA
*
3835668 ATATATTAAAAATATTTTTAATTG
1 ATATATTAAAAATATTTATAATTG
* * *
3835692 ATATTTTATATATATTTATAATT
1 ATATATTAAAAATATTTATAATT
3835715 AAATTTAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
ATATATTAAAAATATTTATAATTG
Found at i:3843468 original size:3 final size:3
Alignment explanation
Indices: 3843462--3843810 Score: 154
Period size: 3 Copynumber: 116.7 Consensus size: 3
3843452 AAAAATAGTA
* * * *
3843462 AAT AAT AAT -AT ATT AAT AAG AAT TAT AAT AAT ATAT ATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * ** * *
3843507 AACA AAT AAT AA- AA- AAT AAC AAT GGGTT AAT AAA AAT AAT AGT AAT
1 AA-T AAT AAT AAT AAT AAT AAT AAT --AAT AAT AAT AAT AAT AAT AAT
* * * * *
3843553 AAT AGA- AGT AAA AAC AAT AAT AAT AAT AA- ATAT AAT AAT AGT GAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* * * * *
3843598 AGT GAT AAT AGT ACAA AAT -AT AAT AAT AACA AAT AAAT AAGT -AT AGA-
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AA-T AAT -AAT AA-T AAT A-AT
* * *
3843645 AAG GA- AAT -GT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
3843691 AAT AAT AAT AAT AAT AAT AAT AAT AA- AAG AAGT AGT AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
* * * * * *
3843736 AAA AAT AAC AAT AAT AGT AAA AAT -AT AAT AAAT AAT AGT AA- AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
*
3843780 AA- AAT AAT AA- AATT AACT AAT -TT AAT AAT AA
1 AAT AAT AAT AAT AA-T AA-T AAT AAT AAT AAT AA
3843811 AGTAGCTAAA
Statistics
Matches: 256, Mismatches: 61, Indels: 58
0.68 0.16 0.15
Matches are distributed among these distances:
2 24 0.09
3 207 0.81
4 24 0.09
5 1 0.00
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:3843514 original size:23 final size:24
Alignment explanation
Indices: 3843461--3843517 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
3843451 AAAAAATAGT
*
3843461 AAATAATAATATATTAATAAGAATT
1 AAATAAT-ATATATTAATAAGAATC
*
3843486 ATAATAATATATATTAATAATAA-C
1 A-AATAATATATATTAATAAGAATC
3843510 AAATAATA
1 AAATAATA
3843518 AAAAATAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 7 0.24
24 1 0.03
25 15 0.52
26 6 0.21
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAATATATATTAATAAGAATC
Found at i:3855611 original size:24 final size:24
Alignment explanation
Indices: 3855522--3855662 Score: 106
Period size: 24 Copynumber: 5.8 Consensus size: 24
3855512 ATCTCGTTAT
*
3855522 TTGGCTTCTCACGAGCTTCCCGATAA
1 TTGGC-TCTCATGAGCTTCCCGAT-A
* **
3855548 TTAGCTCTCATGAGCTTCTTGATTA
1 TTGGCTCTCATGAGCTTCCCGA-TA
* **
3855573 ATGGCTCTCCGGAGCTTCCCGATA
1 TTGGCTCTCATGAGCTTCCCGATA
* *
3855597 TTGGCTCGCATGAGCTTCCC-AAA
1 TTGGCTCTCATGAGCTTCCCGATA
* * *
3855620 TTTGGCTTTCTTGAGCTTCCCGTTA
1 -TTGGCTCTCATGAGCTTCCCGATA
*
3855645 ATGGCTCGT-ATGAGCTTC
1 TTGGCTC-TCATGAGCTTC
3855663 TTGATGATTA
Statistics
Matches: 88, Mismatches: 23, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
23 2 0.02
24 48 0.55
25 33 0.38
26 5 0.06
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (24 bp):
TTGGCTCTCATGAGCTTCCCGATA
Found at i:3856084 original size:19 final size:19
Alignment explanation
Indices: 3856060--3856103 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
3856050 TAAGTATTCA
3856060 ATGTTTGAATGTGCCTTGC
1 ATGTTTGAATGTGCCTTGC
3856079 ATGTTTGAATGTGCCTTGC
1 ATGTTTGAATGTGCCTTGC
3856098 ATGTTT
1 ATGTTT
3856104 ATCTTACATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.16, C:0.14, G:0.25, T:0.45
Consensus pattern (19 bp):
ATGTTTGAATGTGCCTTGC
Found at i:3859134 original size:40 final size:39
Alignment explanation
Indices: 3859024--3859134 Score: 116
Period size: 38 Copynumber: 2.8 Consensus size: 39
3859014 ATTTGATGTG
* * *
3859024 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGG-TTAAAGTCCCGCAGGCTTTGTGCTGGAATTA
* * *
3859064 TATCCGGGTTAAA-TCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTGGAATTA
* * *
3859102 TATCTGAGTTTAAAGTCCCGTAGGCTTTGTGCT
1 TATCCG-GGTTAAAGTCCCGCAGGCTTTGTGCT
3859135 AGTGTTATGT
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
38 24 0.41
39 11 0.19
40 23 0.40
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (39 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTGGAATTA
Found at i:3864294 original size:46 final size:46
Alignment explanation
Indices: 3864242--3864413 Score: 247
Period size: 46 Copynumber: 3.7 Consensus size: 46
3864232 AGTGTGCTCT
* *
3864242 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
3864288 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
3864334 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
3864380 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGA
3864414 CACTATGACA
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 115 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:3877720 original size:21 final size:21
Alignment explanation
Indices: 3877696--3877747 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
3877686 TGAAGGTCTC
3877696 ACACGCCCGTGTGCCCACAAA-
1 ACACGCCCGTGTGCCCA-AAAT
* *
3877717 ACACGGCCGTGTGTCCAAAAT
1 ACACGCCCGTGTGCCCAAAAT
*
3877738 ACATGCCCGT
1 ACACGCCCGT
3877748 ATGGGATCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.27, C:0.37, G:0.21, T:0.15
Consensus pattern (21 bp):
ACACGCCCGTGTGCCCAAAAT
Found at i:3878367 original size:3 final size:3
Alignment explanation
Indices: 3878359--3878383 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
3878349 AAGTTCTAAA
3878359 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
3878384 TAAATGGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:3880198 original size:19 final size:19
Alignment explanation
Indices: 3880174--3880260 Score: 160
Period size: 19 Copynumber: 4.7 Consensus size: 19
3880164 AATCTTTAAG
3880174 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
3880193 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
3880212 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
3880229 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
3880248 GATATGCAATCTT
1 GATATGCAATCTT
3880261 GAAGATATAA
Statistics
Matches: 66, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
17 17 0.26
19 49 0.74
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:3880204 original size:36 final size:35
Alignment explanation
Indices: 3880164--3880260 Score: 108
Period size: 36 Copynumber: 2.6 Consensus size: 35
3880154 ATGGAAATAT
3880164 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
3880200 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
3880236 AATCTTAGATATGATATGCAATCTT
1 AATCTT---TAAGATATGCAATCTT
3880261 GAAGATATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 14
0.78 0.01 0.21
Matches are distributed among these distances:
33 6 0.12
34 1 0.02
35 2 0.04
36 28 0.54
37 1 0.02
38 7 0.13
40 1 0.02
41 6 0.12
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:3880282 original size:22 final size:21
Alignment explanation
Indices: 3880255--3880298 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
3880245 TATGATATGC
3880255 AATCTTGAAGATATAATCTTGT
1 AATCTTGAAGATATAAT-TTGT
* *
3880277 AATCTTGGAGATTTAATTTGT
1 AATCTTGAAGATATAATTTGT
3880298 A
1 A
3880299 GATATCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (21 bp):
AATCTTGAAGATATAATTTGT
Found at i:3885689 original size:29 final size:29
Alignment explanation
Indices: 3885650--3885729 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 29
3885640 CACTTTGTGC
3885650 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGATGGATTATAT
* *
3885679 TATTCTAGTGTGTTTGGGA-GGATTATAT
1 TATTCTGGTGTGTTTTGGATGGATTATAT
* * *
3885707 GATACTGGTGTGTTTTGGTTGGA
1 TATTCTGGTGTGTTTTGGATGGA
3885730 CATTTTGGTG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 23 0.53
29 20 0.47
ACGTcount: A:0.17, C:0.04, G:0.31, T:0.47
Consensus pattern (29 bp):
TATTCTGGTGTGTTTTGGATGGATTATAT
Found at i:3885945 original size:23 final size:22
Alignment explanation
Indices: 3885915--3886001 Score: 65
Period size: 23 Copynumber: 4.0 Consensus size: 22
3885905 GCTTTACTGA
3885915 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCAC-TTATGTGTCGTATT
* * *
3885938 TCAGGCACGTTGTGTGTCGCA-G
1 TCAGGCAC-TTATGTGTCGTATT
* *
3885960 T-AGGCACCT-CGTGT-GTCATT
1 TCAGGCACTTATGTGTCGT-ATT
*
3885980 TCAGGCACTTATGTGTCATATT
1 TCAGGCACTTATGTGTCGTATT
3886002 CTGATCAGGT
Statistics
Matches: 48, Mismatches: 11, Indels: 11
0.69 0.16 0.16
Matches are distributed among these distances:
18 1 0.02
19 5 0.10
20 2 0.04
21 13 0.27
22 8 0.17
23 19 0.40
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.37
Consensus pattern (22 bp):
TCAGGCACTTATGTGTCGTATT
Found at i:3898096 original size:17 final size:17
Alignment explanation
Indices: 3898056--3898097 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
3898046 ATAAATAAAC
*
3898056 AATTAAA-TAAATCAGG
1 AATTAAATTAAATCAGA
* *
3898072 AATAAAATTAAATTAGA
1 AATTAAATTAAATCAGA
3898089 AATTAAATT
1 AATTAAATT
3898098 TGAATTTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (17 bp):
AATTAAATTAAATCAGA
Found at i:3904265 original size:37 final size:37
Alignment explanation
Indices: 3904153--3904265 Score: 106
Period size: 37 Copynumber: 3.1 Consensus size: 37
3904143 TTAACCTTCT
*
3904153 TTTTTTTACTAAATTAATATTTAGATACTACTTTGTA
1 TTTTTTTACTAAATTAATATTTAGATACTACTTTATA
** * * ***
3904190 TTAGTTTA-TCAAATTAA-ACTAAGA-ACGTTACCAAATA
1 TTTTTTTACT-AAATTAATATTTAGATAC--TACTTTATA
3904227 TTTTTTTACTAAATTAATATTTAGATACTACTTTATA
1 TTTTTTTACTAAATTAATATTTAGATACTACTTTATA
3904264 TT
1 TT
3904266 AGTTTATTAA
Statistics
Matches: 55, Mismatches: 15, Indels: 12
0.67 0.18 0.15
Matches are distributed among these distances:
35 2 0.04
36 6 0.11
37 39 0.71
38 6 0.11
39 2 0.04
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.48
Consensus pattern (37 bp):
TTTTTTTACTAAATTAATATTTAGATACTACTTTATA
Found at i:3904600 original size:15 final size:13
Alignment explanation
Indices: 3904568--3904606 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
3904558 TTCCCTCCTC
3904568 TTCCTTTTTTTCT
1 TTCCTTTTTTTCT
*
3904581 TTCCTTTTCTTATTT
1 TTCCTTTT-TT-TCT
3904596 TTCCTTTTTTT
1 TTCCTTTTTTT
3904607 TCCCTGGGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 9 0.39
14 4 0.17
15 10 0.43
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.77
Consensus pattern (13 bp):
TTCCTTTTTTTCT
Found at i:3910302 original size:23 final size:22
Alignment explanation
Indices: 3910259--3910316 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
3910249 AAAAGGTATC
* *
3910259 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
3910280 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
3910303 TGCATATCATATCT
1 TACAAATCATATCT
3910317 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:3910319 original size:19 final size:19
Alignment explanation
Indices: 3910295--3910331 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
3910285 AATCATATCT
3910295 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
3910314 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
3910332 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:3910339 original size:17 final size:19
Alignment explanation
Indices: 3910298--3910339 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
3910288 CATATCTTCT
*
3910298 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
3910317 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
3910334 AAGATT
1 AAGATT
3910340 ATATTTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:3910732 original size:45 final size:45
Alignment explanation
Indices: 3910677--3910872 Score: 268
Period size: 45 Copynumber: 4.4 Consensus size: 45
3910667 GGAAGGCGAT
* *
3910677 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
3910722 ATCTGTTATCTTCGATCTACTCCCCGTCTAATATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
3910767 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
3910811 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
3910856 ATTTGTCATCTTGGATC
1 ATCTGTTATCTTCGATC
3910873 AGTTTCGATG
Statistics
Matches: 132, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
44 39 0.30
45 93 0.70
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:3910842 original size:89 final size:90
Alignment explanation
Indices: 3910677--3910857 Score: 283
Period size: 89 Copynumber: 2.0 Consensus size: 90
3910667 GGAAGGCGAT
** *
3910677 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTAC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTAC
*
3910742 TCCCCGTCTAATATAGAGACGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
* * *
3910767 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTAC
*
3910831 TCCCCGTCTAATACAGAGATGCCAA
66 TCCCCGTCTAATACAGAGACGCCAA
3910856 AT
1 AT
3910858 TTGTCATCTT
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 76 0.92
90 7 0.08
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.30
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTAC
TCCCCGTCTAATACAGAGACGCCAA
Found at i:3911023 original size:78 final size:78
Alignment explanation
Indices: 3910890--3911267 Score: 501
Period size: 78 Copynumber: 4.8 Consensus size: 78
3910880 ATGTAAATAC
* * * *
3910890 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCCAATACAGATATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
3910955 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
3910968 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
3911032 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
*
3911046 ATGAAGGTCAGATCTGCTGTGTCTTCGATTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATG---TC--TTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
*
3911111 CATCTTGGATCTACTTCA
61 CATCTTGGATCTGCTTCA
* * * * *
3911129 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTACTCTCCGTCTAATACAGAAATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
3911194 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * **
3911207 ATGAAGGTCAGATCTGCTATGT-TTTCAATCTGCTTTCCC-TCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTT-GATCTGC-TCCCCGTCTAATACAGAGATGCCAAATC
3911268 TGTTTCTTTG
Statistics
Matches: 266, Mismatches: 25, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
77 4 0.02
78 179 0.67
79 5 0.02
80 2 0.01
81 2 0.01
83 74 0.28
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:3911113 original size:161 final size:156
Alignment explanation
Indices: 3910890--3911237 Score: 509
Period size: 161 Copynumber: 2.2 Consensus size: 156
3910880 ATGTAAATAC
*
3910890 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCCAATACAGATATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCCAATACAGAGATGCCAAATCATCT
* * * * * *
3910955 TGGATCTGCTTCAATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATATAGAG
66 TGGATCTACTTCAATGAAGGT-CAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAA
3911019 ATGCCAAATCATCTTGGATCTGCTTCA
130 ATGCCAAATCATCTTGGATCTGCTTCA
* * *
3911046 ATGAAGGTCAGATCTGCTGTGTCTTCGATTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTC-----GATCTACTCCCCGTCCAATACAGAGATGCCAAAT
* *
3911111 CATCTTGGATCTACTTCAATGAAGGTCAGATCTGCTGTGTCTTCGATCTACTCTCCGTCTAATAC
61 CATCTTGGATCTACTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATAC
3911176 AGAAATGCCAAATCATCTTGGATCTGCTTCA
126 AGAAATGCCAAATCATCTTGGATCTGCTTCA
* *
3911207 ATGAAGGTCAGATCTGCTATGTTTTCAATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCT
3911238 GCTTTCCCTC
Statistics
Matches: 171, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
156 29 0.17
160 2 0.01
161 140 0.82
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (156 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCCAATACAGAGATGCCAAATCATCT
TGGATCTACTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAAA
TGCCAAATCATCTTGGATCTGCTTCA
Done.