Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 139 of 349
Found at i:44706482 original size:20 final size:21
Alignment explanation
Indices: 44706445--44706487 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
44706435 TGTATATCTT
44706445 TCAACAATATAAACACAT-CA
1 TCAACAATATAAACACATACA
*
44706465 TCAACAA-ATCAAATACATACA
1 TCAACAATAT-AAACACATACA
44706486 TC
1 TC
44706488 TTGTCCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 2 0.10
20 14 0.70
21 4 0.20
ACGTcount: A:0.53, C:0.26, G:0.00, T:0.21
Consensus pattern (21 bp):
TCAACAATATAAACACATACA
Found at i:44708284 original size:65 final size:66
Alignment explanation
Indices: 44708132--44708294 Score: 163
Period size: 65 Copynumber: 2.5 Consensus size: 66
44708122 ACGGCTTTAG
* * *
44708132 ACACGCCCGTGTGTCTAGGCCGTGTCAAAACAGGGCATACATACTGACTTGTCTACACGGCCACA
1 ACACGCCCGTGTGTCTAGGCCGTGTCAAAACAGGGCAGACATACTGACTTGGCCACACGGCCAC-
*
44708197 AG
65 AC
* * * * * *
44708199 ACACGTCCGTATG-CTAGGCCGTGTGAAAATTAGGG-AGGC-TACTGACTTGGCCACACGGCTGA
1 ACACGCCCGTGTGTCTAGGCCGTGTCAAAA-CAGGGCAGACATACTGACTTGGCCACACGGC-CA
44708261 C-C
64 CAC
*
44708263 ACACGCCCGTGTGTCTCGGCCGTGGTCAAAAC
1 ACACGCCCGTGTGTCTAGGCCGT-GTCAAAAC
44708295 TGACTTAGCC
Statistics
Matches: 77, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
64 11 0.14
65 26 0.34
66 25 0.32
67 15 0.19
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (66 bp):
ACACGCCCGTGTGTCTAGGCCGTGTCAAAACAGGGCAGACATACTGACTTGGCCACACGGCCACA
C
Found at i:44711419 original size:48 final size:48
Alignment explanation
Indices: 44711304--44711872 Score: 481
Period size: 48 Copynumber: 12.0 Consensus size: 48
44711294 CAAGATAAAT
*
44711304 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
44711354 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
44711402 ATATGTATATGTGGTAAAGCTGAATGGCTACTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
44711450 ATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAATGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG-A--G
* * * * * *** *
44711501 CTACTGTGAAATAT-GT-ATG-AGATAT-G-TATATGTGGTAAAGCCGAATG-G
1 ATA-TGT-ATATGTGGTAAAGCCGA-ATGGCTA-ATGT-G-AAATATGTATGAG
* * * * * *
44711549 CTACTGTGAAATAT-GT-ATG-AGATAT-G-T-ATATGAAATATGTATGAG
1 ATA-TGT-ATATGTGGTAAAGCCGA-ATGGCTAATGTGAAATATGTATGAG
*
44711594 ATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * * * *
44711642 ATATGTATGATATATGT--A----TAT-G-AAATATG---TATG-A-GAT
1 ATATGTAT-ATGT-GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
44711679 ATGTATA--TGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
44711725 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
44711775 ATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
44711823 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
44711871 AT
1 AT
44711873 GTGTGTATAT
Statistics
Matches: 433, Mismatches: 51, Indels: 72
0.78 0.09 0.13
Matches are distributed among these distances:
33 2 0.00
34 2 0.00
35 1 0.00
37 7 0.02
38 1 0.00
39 6 0.01
40 1 0.00
41 4 0.01
42 4 0.01
43 5 0.01
44 18 0.04
45 9 0.02
46 13 0.03
47 1 0.00
48 237 0.55
49 12 0.03
50 86 0.20
51 8 0.02
52 12 0.03
53 4 0.01
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:44711498 original size:24 final size:24
Alignment explanation
Indices: 44711471--44711520 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
44711461 TGGTAAAGCC
44711471 GAATGGCTACTGTGAAATATGTAT
1 GAATGGCTACTGTGAAATATGTAT
44711495 GAATGGCTACTGTGAAATATGTAT
1 GAATGGCTACTGTGAAATATGTAT
44711519 GA
1 GA
44711521 GATATGTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (24 bp):
GAATGGCTACTGTGAAATATGTAT
Found at i:44711539 original size:72 final size:72
Alignment explanation
Indices: 44711433--44711732 Score: 417
Period size: 72 Copynumber: 4.0 Consensus size: 72
44711423 GAATGGCTAC
44711433 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGA-
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAG
44711497 AT-GGCTA
66 ATAGG-TA
44711504 CTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGA
1 -TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGA
*
44711569 GATATGTA
65 GATAGGTA
*
44711577 TATGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAG
*
44711642 ATATGTA
66 ATAGGTA
44711649 TGAT-ATATGTATATGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGA
1 TG-TGA-A---ATATG---TA----TGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGA
*
44711713 AATATGTATGAGATATGTA
54 AATATGTATGAGATAGGTA
44711732 T
1 T
44711733 ATGTGGTAAA
Statistics
Matches: 211, Mismatches: 3, Indels: 17
0.91 0.01 0.07
Matches are distributed among these distances:
72 137 0.65
73 6 0.03
74 1 0.00
76 5 0.02
79 2 0.01
83 60 0.28
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.34
Consensus pattern (72 bp):
TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAG
ATAGGTA
Found at i:44711575 original size:11 final size:11
Alignment explanation
Indices: 44711559--44711601 Score: 59
Period size: 11 Copynumber: 3.7 Consensus size: 11
44711549 CTACTGTGAA
44711559 ATATGTATGAG
1 ATATGTATGAG
*
44711570 ATATGTATATGAA
1 ATATG--TATGAG
44711583 ATATGTATGAG
1 ATATGTATGAG
44711594 ATATGTAT
1 ATATGTAT
44711602 ATGTGGTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 18 0.64
13 10 0.36
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.40
Consensus pattern (11 bp):
ATATGTATGAG
Found at i:44711577 original size:83 final size:79
Alignment explanation
Indices: 44711487--44711732 Score: 371
Period size: 83 Copynumber: 3.1 Consensus size: 79
44711477 CTACTGTGAA
44711487 ATATGTATGAATGGCTACTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATGAAT-G-TA-T-TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
44711552 CTGTGAAATATGTATGAG
62 CTGTGAAATATGTATGAG
44711570 ATATG--T--A--TA-TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGT
1 ATATGTATGAATGTATTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGT
44711628 GAAATATGTATGAG
66 GAAATATGTATGAG
44711642 ATATGTATGATATATGTATATGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATG--A-ATGTAT-TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
44711707 CTGTGAAATATGTATGAG
62 CTGTGAAATATGTATGAG
44711725 ATATGTAT
1 ATATGTAT
44711733 ATGTGGTAAA
Statistics
Matches: 152, Mismatches: 0, Indels: 22
0.87 0.00 0.13
Matches are distributed among these distances:
72 68 0.45
74 1 0.01
75 2 0.01
79 2 0.01
81 3 0.02
83 76 0.50
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.34
Consensus pattern (79 bp):
ATATGTATGAATGTATTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGT
GAAATATGTATGAG
Found at i:44711587 original size:24 final size:24
Alignment explanation
Indices: 44711555--44711604 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
44711545 ATGGCTACTG
44711555 TGAAATATGTATGAGATATGTATA
1 TGAAATATGTATGAGATATGTATA
44711579 TGAAATATGTATGAGATATGTATA
1 TGAAATATGTATGAGATATGTATA
44711603 TG
1 TG
44711605 TGGTAAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.22, T:0.38
Consensus pattern (24 bp):
TGAAATATGTATGAGATATGTATA
Found at i:44711604 original size:13 final size:13
Alignment explanation
Indices: 44711564--44711604 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
44711554 GTGAAATATG
44711564 TATGAGATATGTA
1 TATGAGATATGTA
*
44711577 TATGAAATATG--
1 TATGAGATATGTA
44711588 TATGAGATATGTA
1 TATGAGATATGTA
44711601 TATG
1 TATG
44711605 TGGTAAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 10 0.42
13 14 0.58
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (13 bp):
TATGAGATATGTA
Found at i:44711619 original size:120 final size:118
Alignment explanation
Indices: 44711343--44711649 Score: 415
Period size: 120 Copynumber: 2.6 Consensus size: 118
44711333 AATGTGAAAT
* *
44711343 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGT
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGT
*
44711408 ATATGTGGTAAAGCTGAATGGCTACTGTGAAATATGTATGAGATATGTATATG
66 ATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATATG
* * * ** * **
44711461 -T-GGTAAAGCCGA-ATGGCTACTGT-GAAATATGTATGAATGGCTACTGTGAAATATGTATGAG
1 ATATGT-ATG-AGATATGTATA-TGTGGTAA-A-G-CCGAATGGCTACTGTGAAATATGTATGAG
44711522 ATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATATG
60 ATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATATG
44711581 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATAT
1 --ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATAT
44711646 GTAT
64 GTAT
44711650 GATATATGTA
Statistics
Matches: 158, Mismatches: 19, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
116 1 0.01
117 11 0.07
118 6 0.04
119 1 0.01
120 119 0.75
121 1 0.01
122 6 0.04
123 11 0.07
124 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.33
Consensus pattern (118 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATATG
Found at i:44711647 original size:11 final size:11
Alignment explanation
Indices: 44711631--44711684 Score: 72
Period size: 11 Copynumber: 4.7 Consensus size: 11
44711621 CTACTGTGAA
44711631 ATATGTATGAG
1 ATATGTATGAG
*
44711642 ATATGTATGAT
1 ATATGTATGAG
*
44711653 ATATGTATATGAA
1 ATATG--TATGAG
44711666 ATATGTATGAG
1 ATATGTATGAG
44711677 ATATGTAT
1 ATATGTAT
44711685 ATGTGGTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
11 28 0.74
13 10 0.26
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (11 bp):
ATATGTATGAG
Found at i:44711669 original size:24 final size:24
Alignment explanation
Indices: 44711636--44711687 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
44711626 GTGAAATATG
* *
44711636 TATGAGATATGTATGATATATGTA
1 TATGAAATATGTATGAGATATGTA
44711660 TATGAAATATGTATGAGATATGTA
1 TATGAAATATGTATGAGATATGTA
44711684 TATG
1 TATG
44711688 TGGTAAAGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40
Consensus pattern (24 bp):
TATGAAATATGTATGAGATATGTA
Found at i:44711780 original size:98 final size:98
Alignment explanation
Indices: 44711666--44711863 Score: 360
Period size: 98 Copynumber: 2.0 Consensus size: 98
44711656 TGTATATGAA
*
44711666 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGT
44711731 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
44711764 ATATATATGAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGT
*
44711829 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
44711862 AT
1 AT
44711864 GTAGGAGATG
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (98 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:44711880 original size:98 final size:96
Alignment explanation
Indices: 44711662--44711882 Score: 336
Period size: 98 Copynumber: 2.3 Consensus size: 96
44711652 TATATGTATA
44711662 TGAAATATGTATGAGA-TATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGA
1 TGAAATATGTA-GAGAGTATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGA
44711726 TATGTATATGTGGTAAAGCCGAATGGCTAATG
65 TATGTATATGTGGTAAAGCCGAATGGCTAATG
* * * *
44711758 TGAAATATATATATGAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAG
1 TGAAATATGTAGA-GAG-TATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAG
*
44711823 ATATGTATATGTGGTAAAGCCGAATGGCTAGTG
64 ATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
44711856 TGAAATATGTAGGAGATGTGTGTATAT
1 TGAAATATGTA-GAGA-GTATGTATAT
44711883 TTTGGCCGAA
Statistics
Matches: 112, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
95 1 0.01
96 12 0.11
98 97 0.87
99 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.33
Consensus pattern (96 bp):
TGAAATATGTAGAGAGTATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGAT
ATGTATATGTGGTAAAGCCGAATGGCTAATG
Found at i:44712121 original size:37 final size:37
Alignment explanation
Indices: 44712013--44712121 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
44712003 GGAAATATAT
*
44712013 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAGG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTGG
* *
44712050 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTGG
* *
44712087 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
44712122 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTGG
Found at i:44713234 original size:27 final size:27
Alignment explanation
Indices: 44713181--44713236 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
44713171 ATCTTATAGA
*
44713181 GGCATATCAGTCATTTTACCATGTAGG
1 GGCATATCAGTCATTTTACAATGTAGG
*
44713208 GGCATTTCAGTCATTTTATCAAT-TAGG
1 GGCATATCAGTCATTTTA-CAATGTAGG
44713235 GG
1 GG
44713237 GTTTAGGTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 23 0.88
28 3 0.12
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (27 bp):
GGCATATCAGTCATTTTACAATGTAGG
Found at i:44714767 original size:40 final size:40
Alignment explanation
Indices: 44714723--44714831 Score: 182
Period size: 40 Copynumber: 2.7 Consensus size: 40
44714713 GCTACTAGCT
*
44714723 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
**
44714763 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
*
44714803 CAAATGCCTTCGGGACTTAGCTCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
44714832 CAATCCGAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:44714884 original size:18 final size:18
Alignment explanation
Indices: 44714839--44714880 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
44714829 TATCAATCCG
*
44714839 AATATTCATGCACATATC
1 AATATTCATGCACACATC
*
44714857 AATAAATCATG-ACACATC
1 AAT-ATTCATGCACACATC
44714875 AATATT
1 AATATT
44714881 TCATTTTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
17 2 0.10
18 12 0.60
19 6 0.30
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.31
Consensus pattern (18 bp):
AATATTCATGCACACATC
Found at i:44716576 original size:19 final size:20
Alignment explanation
Indices: 44716552--44716594 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
44716542 AAGCTCATGG
* *
44716552 GGCCCACAA-GGCCCAATTT
1 GGCCCAAAATGGCCCAATTC
44716571 GGCCCAAAATGGCCCAATTC
1 GGCCCAAAATGGCCCAATTC
44716591 GGCC
1 GGCC
44716595 TCGACCCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.26, C:0.37, G:0.23, T:0.14
Consensus pattern (20 bp):
GGCCCAAAATGGCCCAATTC
Found at i:44725124 original size:43 final size:43
Alignment explanation
Indices: 44725004--44725161 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
44724994 AGCTCGTTCA
* * *
44725004 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATAT-G
* *
44725047 ATGCC-ACTATCCCAGGCA-GGATCTTACACG-AAATCAAATATG
1 ATGCCAAC-GTCCCAGACATGG-TCTTACACGTAAATCAAATATG
* *
44725089 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA-AA-TATG
* **
44725133 ATGCCAACGTCCTAGATGTGGTCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
44725162 AAAAACACAT
Statistics
Matches: 94, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
42 26 0.28
43 39 0.41
44 28 0.30
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATG
Found at i:44726523 original size:4 final size:4
Alignment explanation
Indices: 44726514--44726540 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
44726504 TTTTTTGATG
44726514 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
44726541 TGTATTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:44726575 original size:19 final size:19
Alignment explanation
Indices: 44726551--44726588 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
44726541 TGTATTTCAT
44726551 AATATTTAGTTATTACTAA
1 AATATTTAGTTATTACTAA
44726570 AATATTTAGTTATTACTAA
1 AATATTTAGTTATTACTAA
44726589 CTTGTTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
AATATTTAGTTATTACTAA
Found at i:44727932 original size:17 final size:18
Alignment explanation
Indices: 44727910--44727945 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
44727900 CACATTGAAG
44727910 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
44727927 TGTTTTCATTGAAAACCT
1 TGTTTTCAGTGAAAACCT
44727945 T
1 T
44727946 CCTTAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:44729131 original size:28 final size:28
Alignment explanation
Indices: 44729056--44729163 Score: 83
Period size: 28 Copynumber: 3.9 Consensus size: 28
44729046 ACATACCTGT
* * *
44729056 ATATGGCCCACTAGGCGCAATCTCCTTC
1 ATATGGCCCATTAGGCCCAATCACCTTC
** *
44729084 ATATGGCCCATTAGAACCAATCACCTTT
1 ATATGGCCCATTAGGCCCAATCACCTTC
* * * *
44729112 TTGTGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCC-AATCACCTTC
** *
44729141 ATACAG-CCATTAGGACCAATCAC
1 ATATGGCCCATTAGGCCCAATCAC
44729164 ATTTACAGTC
Statistics
Matches: 63, Mismatches: 16, Indels: 3
0.77 0.20 0.04
Matches are distributed among these distances:
27 6 0.10
28 46 0.73
29 11 0.17
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.26
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAATCACCTTC
Found at i:44729262 original size:18 final size:19
Alignment explanation
Indices: 44729239--44729275 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
44729229 TGGGCCCAAC
*
44729239 AGCCCA-TCTGGCCCATTT
1 AGCCCATTCCGGCCCATTT
44729257 AGCCCATTCCGGCCCATTT
1 AGCCCATTCCGGCCCATTT
44729276 GGTCAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.16, C:0.41, G:0.16, T:0.27
Consensus pattern (19 bp):
AGCCCATTCCGGCCCATTT
Found at i:44731751 original size:93 final size:93
Alignment explanation
Indices: 44731636--44731807 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
44731626 AGGATATTTG
* * * **
44731636 GGCATCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
*
44731701 TTGAGTCCGAGTTCGTGAAATGTAACCA
66 TTAAGTCCGAGTTCGTGAAATGTAACCA
*
44731729 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
44731794 TTAAGTCCGAGTTC
66 TTAAGTCCGAGTTC
44731808 TCTTATGGGT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCATTGAG
TTAAGTCCGAGTTCGTGAAATGTAACCA
Found at i:44734954 original size:27 final size:28
Alignment explanation
Indices: 44734922--44734981 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
44734912 GTACACTTAG
* *
44734922 ACCCCTTACTG-G-TAAAATGGCTGTTAT
1 ACCCCTTAC-GAGATAAAATGACTGATAT
44734949 ACCCC-TACGAGATAAAATGACTGATAT
1 ACCCCTTACGAGATAAAATGACTGATAT
44734976 ACCCCT
1 ACCCCT
44734982 ATGATATGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 1 0.04
26 4 0.14
27 23 0.82
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.27
Consensus pattern (28 bp):
ACCCCTTACGAGATAAAATGACTGATAT
Found at i:44736827 original size:25 final size:25
Alignment explanation
Indices: 44736799--44736861 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
44736789 GAATCAGTTT
*
44736799 GCTCTCATGAGCTATA-AATCGGTAA
1 GCTCTCACGAGCTA-AGAATCGGTAA
*
44736824 GCTCAT-ACGAGCTAAGAATCTGTAA
1 GCTC-TCACGAGCTAAGAATCGGTAA
44736849 GCTCTCACGAGCT
1 GCTCTCACGAGCT
44736862 GCAATCAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 2 0.06
25 30 0.91
26 1 0.03
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (25 bp):
GCTCTCACGAGCTAAGAATCGGTAA
Found at i:44737735 original size:15 final size:15
Alignment explanation
Indices: 44737715--44737745 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
44737705 GAAAATGGAA
44737715 GATGATTATTAATTT
1 GATGATTATTAATTT
44737730 GATGATTATTAATTT
1 GATGATTATTAATTT
44737745 G
1 G
44737746 GTTTTCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (15 bp):
GATGATTATTAATTT
Found at i:44744553 original size:25 final size:25
Alignment explanation
Indices: 44744513--44744587 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 25
44744503 TCGTCAATTT
44744513 CTATACAT--GTAAGCTCATACGAG
1 CTATACATCGGTAAGCTCATACGAG
* *
44744536 CTATTA-ATTGGTATGCTC-TCACGAG
1 CTA-TACATCGGTAAGCTCAT-ACGAG
* *
44744561 TTATACATCGGTAAGCTCATATGAG
1 CTATACATCGGTAAGCTCATACGAG
44744586 CT
1 CT
44744588 GAGAATTGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
23 5 0.12
24 5 0.12
25 29 0.73
26 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (25 bp):
CTATACATCGGTAAGCTCATACGAG
Found at i:44744598 original size:25 final size:25
Alignment explanation
Indices: 44744570--44744648 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
44744560 GTTATACATC
44744570 GGTAAGCTCATATGAGCTGAGAATT
1 GGTAAGCTCATATGAGCTGAGAATT
*
44744595 GGTAAGCTC-TCATGAGCTG-CAATT
1 GGTAAGCTCAT-ATGAGCTGAGAATT
* ** *
44744619 GGTAATCTCATACAAGCTGAGAATC
1 GGTAAGCTCATATGAGCTGAGAATT
44744644 GGTAA
1 GGTAA
44744649 TGTAACACCC
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
24 19 0.42
25 26 0.58
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (25 bp):
GGTAAGCTCATATGAGCTGAGAATT
Found at i:44749721 original size:46 final size:46
Alignment explanation
Indices: 44749671--44749843 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
44749661 TGGTTGAGCA
44749671 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
44749717 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
44749762 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
44749810 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
44749844 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:44749827 original size:93 final size:93
Alignment explanation
Indices: 44749668--44749838 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
44749658 GGATGGTTGA
* *
44749668 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44749733 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
44749761 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
44749826 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
44749839 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:44753440 original size:10 final size:10
Alignment explanation
Indices: 44753425--44753452 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
44753415 TTTGTCTGTA
44753425 CATGATATGC
1 CATGATATGC
44753435 CATGATATGC
1 CATGATATGC
44753445 CATGATAT
1 CATGATAT
44753453 ATTCATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (10 bp):
CATGATATGC
Found at i:44755270 original size:23 final size:23
Alignment explanation
Indices: 44755244--44755287 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
44755234 AAATTAGGTG
*
44755244 TTGAGCACAAGAGAA-GAAAAGAA
1 TTGAGC-CAAAAGAATGAAAAGAA
44755267 TTGAGCCAAAAGAATGAAAAG
1 TTGAGCCAAAAGAATGAAAAG
44755288 GAAAAATGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.11
Consensus pattern (23 bp):
TTGAGCCAAAAGAATGAAAAGAA
Found at i:44765747 original size:40 final size:40
Alignment explanation
Indices: 44765664--44765841 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
44765654 AAACCAAGTA
* * * *
44765664 CCTTCGGGATTTAG-CCGGATATAGCT-TCTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
44765703 CCTTCGGGACTTAGCCCGGATATAGTAACTGGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
44765743 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
44765783 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
44765823 CCTTCGGGACTTATCCCGG
1 CCTTCGGGACTTAGCCCGG
44765842 TTATCATCCG
Statistics
Matches: 125, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.11
40 111 0.89
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:44769607 original size:93 final size:93
Alignment explanation
Indices: 44769448--44769619 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
44769438 CGCCCATAAG
* **
44769448 CGAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
44769513 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
44769541 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
44769606 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
44769620 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:44769614 original size:46 final size:45
Alignment explanation
Indices: 44769449--44769616 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 45
44769439 GCCCATAAGC
* * * * *
44769449 GAACTCGGACTCAACTCAACGAGCTCAGACGTTCGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA-CAGT
* *
44769495 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC---
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CACAGT
44769542 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAC-AGT
44769588 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
44769617 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
46 56 0.54
47 29 0.28
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCACAGT
Found at i:44776342 original size:46 final size:46
Alignment explanation
Indices: 44776289--44776464 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
44776279 TGGTTGAGCA
*
44776289 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
* *** * * * *
44776335 TCCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGACGTA-AC-TAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATACGAATG
* * *
44776380 CATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
* *
44776428 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44776465 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.66
47 31 0.30
48 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
Found at i:44776445 original size:93 final size:93
Alignment explanation
Indices: 44776286--44776456 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
44776276 GGATGGTTGA
*
44776286 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAATGCCCGAACTCATTGAGT
44776351 TGAGTCCGAGTTCGAGAGACGTAACTAG
66 TGAGTCCGAGTTCGAGAGACGTAACTAG
* * * * *
44776379 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAATGCCCGAACTCATTGAGT
44776444 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
44776457 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGACGTAACTAG
Found at i:44782373 original size:17 final size:18
Alignment explanation
Indices: 44782351--44782384 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
44782341 CACATTGAAG
44782351 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
44782368 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
44782385 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:44786028 original size:28 final size:29
Alignment explanation
Indices: 44785990--44786052 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 29
44785980 AAGTCTGCAT
*
44785990 ACATGCATATGGCCCATTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
44786018 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
44786047 ACATTC
1 ACATTC
44786053 GTATACATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 22 0.71
29 9 0.29
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:44786308 original size:16 final size:18
Alignment explanation
Indices: 44786267--44786309 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
44786257 GTAGCCAAAC
44786267 TTTCGGC-TTTTCGACAT
1 TTTCGGCATTTTCGACAT
44786284 TTT-GGCATTTT-GAC-T
1 TTTCGGCATTTTCGACAT
44786299 TTTCGGCATTT
1 TTTCGGCATTT
44786310 CGGGATTTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 4 0.17
16 13 0.54
17 7 0.29
ACGTcount: A:0.12, C:0.19, G:0.19, T:0.51
Consensus pattern (18 bp):
TTTCGGCATTTTCGACAT
Found at i:44796065 original size:37 final size:37
Alignment explanation
Indices: 44796004--44796082 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
44795994 TTATTACGAA
* *
44796004 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
*
44796041 GTCTTACCCGGACCA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGA-CATAATCCCCACACGAAGTCATCGG
44796078 GTCTT
1 GTCTT
44796083 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
Found at i:44796279 original size:47 final size:47
Alignment explanation
Indices: 44796201--44796709 Score: 901
Period size: 47 Copynumber: 10.8 Consensus size: 47
44796191 CCCTTCGGGA
* * * * * *
44796201 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
44796248 CCTGTCACATATATACACTTTCACATTCATCACATCGGACATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44796295 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44796342 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44796389 CTTATCACATATATACACTTTCACATTCATCAGATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44796436 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44796483 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44796532 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44796579 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44796626 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44796673 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
44796710 AATCCTAAAT
Statistics
Matches: 444, Mismatches: 16, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 397 0.89
49 47 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44796614 original size:237 final size:235
Alignment explanation
Indices: 44796201--44796709 Score: 901
Period size: 237 Copynumber: 2.2 Consensus size: 235
44796191 CCCTTCGGGA
* * * * * *
44796201 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
44796266 TTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
44796331 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGCCTTATCA
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
44796396 CATATATACACTTTCACATTCATCAGATCGGCCATTAGGC
196 CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44796436 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
*
44796501 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
44796566 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
44796631 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
194 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44796673 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
44796710 AATCCTAAAT
Statistics
Matches: 261, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
235 47 0.18
237 214 0.82
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (235 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGACATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44798164 original size:37 final size:37
Alignment explanation
Indices: 44798114--44798192 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
44798104 TTATTACGAA
* * *
44798114 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
44798151 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
44798188 GTCTT
1 GTCTT
44798193 TAGAGCTCCG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:44798387 original size:47 final size:47
Alignment explanation
Indices: 44798309--44798816 Score: 919
Period size: 47 Copynumber: 10.8 Consensus size: 47
44798299 CCCTTCGGGA
* * * * * *
44798309 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44798356 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44798403 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44798449 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44798496 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44798543 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44798590 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44798637 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44798684 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44798733 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44798780 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
44798817 AATCCTAAAT
Statistics
Matches: 448, Mismatches: 10, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
46 46 0.10
47 355 0.79
49 47 0.10
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44798743 original size:143 final size:141
Alignment explanation
Indices: 44798309--44798816 Score: 919
Period size: 140 Copynumber: 3.6 Consensus size: 141
44798299 CCCTTCGGGA
* * * * * * * *
44798309 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
44798374 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
44798439 GG-CATTAGGC
131 GGCCATTAGGC
44798449 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
44798514 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
44798579 GGCCATTAGGC
131 GGCCATTAGGC
44798590 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
44798655 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
44798720 TCGGCCATTAGGC
129 TCGGCCATTAGGC
44798733 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
44798798 TTTCACATTCATCACATCG
66 TTTCACATTCATCACATCG
44798817 AATCCTAAAT
Statistics
Matches: 357, Mismatches: 8, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
140 124 0.35
141 110 0.31
143 123 0.34
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:44800737 original size:56 final size:56
Alignment explanation
Indices: 44800670--44800789 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
44800660 TATTAGTTTA
*
44800670 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATATTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
44800726 TTGCCCATGCTTCTTATATTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATATTATTCTTCCATTAACACAACATGTTTCATGACATGTT
44800782 TTGCCCAT
1 TTGCCCAT
44800790 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATATTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:44801536 original size:44 final size:44
Alignment explanation
Indices: 44801439--44801529 Score: 155
Period size: 44 Copynumber: 2.1 Consensus size: 44
44801429 ATTCATATGT
* * *
44801439 ATGAATGTTTTTAAAAAGAATAAAATTTTATGGCTTAGATTTGT
1 ATGAATGTTTTTAAAAAGAATAAAATTTTATGGCTCAGAATTGC
44801483 ATGAATGTTTTTAAAAAGAATAAAATTTTATGGCTCAGAATTGC
1 ATGAATGTTTTTAAAAAGAATAAAATTTTATGGCTCAGAATTGC
44801527 ATG
1 ATG
44801530 TGTGTTTACA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (44 bp):
ATGAATGTTTTTAAAAAGAATAAAATTTTATGGCTCAGAATTGC
Found at i:44804441 original size:46 final size:47
Alignment explanation
Indices: 44804388--44804646 Score: 164
Period size: 46 Copynumber: 5.5 Consensus size: 47
44804378 TTTGTGCACT
44804388 AGTGTAAGA-CATGTCTGGGACATGCATTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATTGGCCACATTATGAGAGCC
* * * *
44804434 AGTGTAAGACCATGTCTAGGACATGGCA-T--CGACATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGCCACATT---ATGAGAGCC
* * ** *
44804482 AGTGTAAGACACA--TCTGGGACATGAATCGGCCTTGA-GATGTA-AGCC
1 AGTGTAAGAC-CATGTCTGGGACATGCATTGGCC-ACATTATG-AGAGCC
* * * *
44804528 AGTGTAAGA-CATGTCTGGGACATGCATTGG-C-TATGA-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATTGGCCACATTATGA-GAGCC
* * * * * *
44804572 AGTGTAAGATCATGTCTAGGACATGGCATCGGCACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATTGGC-CACAT-TATGAGAGCC
44804622 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
44804647 GTGTCGGCCT
Statistics
Matches: 162, Mismatches: 28, Indels: 43
0.70 0.12 0.18
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 15 0.09
45 20 0.12
46 46 0.28
47 24 0.15
48 21 0.13
49 6 0.04
50 25 0.15
51 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATTGGCCACATTATGAGAGCC
Found at i:44805549 original size:42 final size:42
Alignment explanation
Indices: 44805490--44805573 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
44805480 ACACACGGGT
* *
44805490 GTGTGTCTAGGTCGTGTGTGATACACGGTCAGCCCCATGGGC
1 GTGTGTCTAGGCCGTGTGTGACACACGGTCAGCCCCATGGGC
*
44805532 GTGTGTCTAGGCCGTGTGTGACACACGGTCAGCTCCATGGGC
1 GTGTGTCTAGGCCGTGTGTGACACACGGTCAGCCCCATGGGC
44805574 ATGTTGTTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.14, C:0.25, G:0.36, T:0.25
Consensus pattern (42 bp):
GTGTGTCTAGGCCGTGTGTGACACACGGTCAGCCCCATGGGC
Found at i:44815785 original size:46 final size:44
Alignment explanation
Indices: 44815701--44815800 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 44
44815691 GACAAAAACT
44815701 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT--GCC
* * *
44815747 AGTGTAAGATATGTCTGGGACATGCATCGG-CTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTGCC
44815791 AGTGTAAGAC
1 AGTGTAAGAC
44815801 CATATCTAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
44 11 0.22
45 2 0.04
46 36 0.73
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTGCC
Found at i:44827207 original size:42 final size:43
Alignment explanation
Indices: 44827108--44827222 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
44827098 AATGCCAACA
* * *
44827108 TCCCAGACGTGGTCTTACATGAAATCAAACATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGAAATCAGACATCGATGCCACTG
* * *
44827151 TCCTTA-ACAGGGTCTTACACGAAATCAGATA-CGATGCCGA-TG
1 TCC-CAGACATGGTCTTACACGAAATCAGACATCGATGCC-ACTG
*
44827193 TCCCAGACATGGTCTTACACGTAAAACAGA
1 TCCCAGACATGGTCTTACACG-AAATCAGA
44827223 AGTTAATGCT
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
41 1 0.02
42 26 0.44
43 31 0.53
44 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAATCAGACATCGATGCCACTG
Found at i:44834098 original size:23 final size:25
Alignment explanation
Indices: 44834048--44834100 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
44834038 ATGTCATAAA
*
44834048 CATAACTTCATCATATAACTTATAC
1 CATAACTTCATCATATAACATATAC
44834073 CATAAC-TCATTCATA-AACATAT-C
1 CATAACTTCA-TCATATAACATATAC
44834096 CATAA
1 CATAA
44834101 TCAAGCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.23
24 9 0.35
25 11 0.42
ACGTcount: A:0.43, C:0.25, G:0.00, T:0.32
Consensus pattern (25 bp):
CATAACTTCATCATATAACATATAC
Found at i:44835994 original size:50 final size:50
Alignment explanation
Indices: 44835906--44836116 Score: 201
Period size: 50 Copynumber: 4.2 Consensus size: 50
44835896 ATGACCTTTA
* * * * * *
44835906 ATATTCGACCACATAGGTATGTACATATATGATGTTATATTGGATCTTGT
1 ATATTCGGCCATAAAGGTATGCACATATGTGATATTATATTGGATCTTGT
* * *
44835956 ATATTCGGCTATAAAGGTATGCACAAATGTGATATTATATTTGAAT-TTGT
1 ATATTCGGCCATAAAGGTATGCACATATGTGATATTATA-TTGGATCTTGT
* * * * *
44836006 ATATTCAGCCATATAA-GTAAGCACATATGTGATGTTATATTTGATCTTGC
1 ATATTCGGCCATA-AAGGTATGCACATATGTGATATTATATTGGATCTTGT
* * * ** * *
44836056 ATATTTGGCCACATAGGTATGCTTATATGTGATATTATATTTGATCTCGT
1 ATATTCGGCCATAAAGGTATGCACATATGTGATATTATATTGGATCTTGT
44836106 ATATTCGGCCA
1 ATATTCGGCCA
44836117 AATGAGTGAT
Statistics
Matches: 129, Mismatches: 28, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
49 5 0.04
50 117 0.91
51 7 0.05
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (50 bp):
ATATTCGGCCATAAAGGTATGCACATATGTGATATTATATTGGATCTTGT
Found at i:44836086 original size:100 final size:100
Alignment explanation
Indices: 44835928--44836116 Score: 254
Period size: 100 Copynumber: 1.9 Consensus size: 100
44835918 ATAGGTATGT
* * *
44835928 ACATATATGATGTTATATTGGATCTTGTATATTCGGCTATAAAGGTATGCACAAATGTGATATTA
1 ACATATATGATGTTATATTGGATCTTGCATATTCGGCCACAAAGGTATGCACAAATGTGATATTA
*
44835993 TATTTGAAT-TTGTATATTCAGCCATATAAGTAAGC
66 TATTTG-ATCTCGTATATTCAGCCATATAAGTAAGC
* * * * ** *
44836028 ACATATGTGATGTTATATTTGATCTTGCATATTTGGCCACATAGGTATGCTTATATGTGATATTA
1 ACATATATGATGTTATATTGGATCTTGCATATTCGGCCACAAAGGTATGCACAAATGTGATATTA
*
44836093 TATTTGATCTCGTATATTCGGCCA
66 TATTTGATCTCGTATATTCAGCCA
44836117 AATGAGTGAT
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
99 2 0.03
100 74 0.97
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (100 bp):
ACATATATGATGTTATATTGGATCTTGCATATTCGGCCACAAAGGTATGCACAAATGTGATATTA
TATTTGATCTCGTATATTCAGCCATATAAGTAAGC
Found at i:44838347 original size:67 final size:65
Alignment explanation
Indices: 44838259--44838497 Score: 209
Period size: 64 Copynumber: 3.6 Consensus size: 65
44838249 CACCCATGTG
* * * ** *
44838259 ACCTAGCCAC-TTTATCTCGTAGCTCTCTTGTTTACATGGTGTCCTTCACCTGGA-ACCACACAT
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGT--TACAAAT-AATACCACACAT
44838322 GCA
63 GCA
* * * *
44838325 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACAAGGTG-TACAAATAATATCACCCATGCG
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTTACAAATAATACCACACATGCA
* * * * * * *
44838389 ACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTG-TACACATAGTATCACCCATGCG
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTTACAAATAATACCACACATGCA
*
44838453 ACCTAGCTACCTTATAATGTCTCGTAGCTCTCTTGTAC-ACATGGT
1 ACCTAGCTACATT-T-A--TCTCGTAGCTCTCTTGT-CTACATGGT
44838498 ATACATCCCG
Statistics
Matches: 148, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
63 1 0.01
64 83 0.56
65 1 0.01
66 10 0.07
67 29 0.20
68 23 0.16
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (65 bp):
ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTTACAAATAATACCACACATGCA
Found at i:44838415 original size:64 final size:64
Alignment explanation
Indices: 44838319--44838462 Score: 234
Period size: 64 Copynumber: 2.2 Consensus size: 64
44838309 TGGAACCACA
* * *
44838319 CATGCAACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACAAGGTGTACAAATAATATCACC
1 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACAAGGTGTACAAATAATATCACC
* * *
44838383 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACC
1 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACAAGGTGTACAAATAATATCACC
44838447 CATGCGACCTAGCTAC
1 CATGCGACCTAGCTAC
44838463 CTTATAATGT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
64 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (64 bp):
CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACAAGGTGTACAAATAATATCACC
Found at i:44839028 original size:29 final size:29
Alignment explanation
Indices: 44838995--44839051 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
44838985 TCCTTAACTC
44838995 AAACTTTTGCAAAATT-ACAATTTTGCCCT
1 AAACTTTTGC-AAATTCACAATTTTGCCCT
* *
44839024 AAACTTTTGCATATTCACACTTTTGCCC
1 AAACTTTTGCAAATTCACAATTTTGCCC
44839052 CTAGGCTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (29 bp):
AAACTTTTGCAAATTCACAATTTTGCCCT
Found at i:44840861 original size:43 final size:43
Alignment explanation
Indices: 44840814--44840901 Score: 99
Period size: 42 Copynumber: 2.0 Consensus size: 43
44840804 TCTTACATGC
44840814 AATCAAACATCGATGC-CATCGTCCCAGACAGGGCCTTACAC-TA
1 AATCAAACA-CGATGCTCAT-GTCCCAGACAGGGCCTTACACATA
* * * * *
44840857 AATCAGATACGATGCTGATGTCCCAGACATGGTCTTACACATA
1 AATCAAACACGATGCTCATGTCCCAGACAGGGCCTTACACATA
44840900 AA
1 AA
44840902 ATAGAAGTCG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
42 25 0.66
43 13 0.34
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (43 bp):
AATCAAACACGATGCTCATGTCCCAGACAGGGCCTTACACATA
Found at i:44843194 original size:17 final size:17
Alignment explanation
Indices: 44843172--44843207 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
44843162 AATTAATATT
*
44843172 AAAATGAAAATAAAATG
1 AAAATGAAAAGAAAATG
*
44843189 AAAATGATAAGAAAATG
1 AAAATGAAAAGAAAATG
44843206 AA
1 AA
44843208 GGAAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (17 bp):
AAAATGAAAAGAAAATG
Found at i:44845387 original size:47 final size:47
Alignment explanation
Indices: 44845333--44845462 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
44845323 GTGCGAATAA
* *
44845333 TACCTTGATTTGGCTATGGGCCATGGTATAAGTATTCAAAGATGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAAGTACTCAAAGATAAGT
* * *** *
44845380 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGGTAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAAGTACTCAAAGATAAGT
* *
44845427 TACCTTGATTTGGTTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAAGTACT
44845463 TATCGATTGT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAAGTACTCAAAGATAAGT
Found at i:44845480 original size:47 final size:48
Alignment explanation
Indices: 44845330--44845481 Score: 138
Period size: 47 Copynumber: 3.2 Consensus size: 48
44845320 TGGGTGCGAA
* *
44845330 TAATACCTTGATTTGGCTATGGGCCATGGTATAAGTA-TTCAAAGATGAG
1 TAATACCTTGATTTGGCTATGGGCCATGGTATAGGTACTT-AACGAT-AG
* * **
44845379 T--TACCTTGATTTGGCTACGGGCCATGGTATAGGTAC-T-CCG-GGG
1 TAATACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTAACGATAG
* * *
44845422 TAAGTTACCTTGATTTGGTTATGGGCCATGGTATAGGTACTTATCGATTG
1 TAA--TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTAACGATAG
44845472 TAAT-CCTTGA
1 TAATACCTTGA
44845482 GTATTTGATT
Statistics
Matches: 84, Mismatches: 11, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
43 2 0.02
45 1 0.01
47 72 0.86
48 2 0.02
49 3 0.04
50 4 0.05
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (48 bp):
TAATACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTAACGATAG
Found at i:44846460 original size:21 final size:21
Alignment explanation
Indices: 44846420--44846461 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
44846410 CCCCTCTAGA
*
44846420 TTTCAAATGGCCTAATTATAC
1 TTTCAAATGCCCTAATTATAC
44846441 TTTCAAATGACCCTAA-TATAC
1 TTTCAAATG-CCCTAATTATAC
44846462 CTCATTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (21 bp):
TTTCAAATGCCCTAATTATAC
Found at i:44849208 original size:37 final size:37
Alignment explanation
Indices: 44849158--44849229 Score: 128
Period size: 37 Copynumber: 1.9 Consensus size: 37
44849148 TGGAGATACT
44849158 TTCAAGAATACTTTATCTCTGACCTAGG-ACTCAATCA
1 TTCAAGAATACTTTATCTCTGACCT-GGAACTCAATCA
44849195 TTCAAGAATACTTTATCTCTGACCTGGAACTCAAT
1 TTCAAGAATACTTTATCTCTGACCTGGAACTCAAT
44849230 TTCTTTTCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
36 2 0.06
37 32 0.94
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.33
Consensus pattern (37 bp):
TTCAAGAATACTTTATCTCTGACCTGGAACTCAATCA
Found at i:44857679 original size:49 final size:50
Alignment explanation
Indices: 44857590--44857832 Score: 224
Period size: 49 Copynumber: 4.9 Consensus size: 50
44857580 CCTATTGTGA
* * * * *
44857590 GGTCACGTGTGTAGTACTAAGAGCAGGTTACTACGTGTACCAGATTATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTC
* * * * *
44857639 GGTCGCATGTGTACTTCTAAGTGCAGGCTACTATGCGTACCCGATAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TTC
* * * ** ** *
44857690 GATCACGTGTGTAGTACTAAATGCAGGCTACTACATGT--CAGATGGTTG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTC
** * * *
44857738 GGTCACGCGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATAATT-
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTC
* *
44857787 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
44857833 GCTTCGGCTA
Statistics
Matches: 153, Mismatches: 37, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
48 35 0.23
49 80 0.52
50 9 0.06
51 29 0.19
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTC
Found at i:44863421 original size:42 final size:43
Alignment explanation
Indices: 44863331--44863433 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
44863321 GTCCTGGACG
* ** *
44863331 TGGTCTTATATGTAATTCAATATCGATGCCTTTGTCCCAAATA
1 TGGTCTTATATGTAAATCAATATCGATGCCAATGTCCCAAACA
* * *
44863374 GGGTCTTACATG-AAATCAGATAT-GATGCCAATGTCCCAGACA
1 TGGTCTTATATGTAAATCA-ATATCGATGCCAATGTCCCAAACA
44863416 TGGTCTTATATGTAAATC
1 TGGTCTTATATGTAAATC
44863434 TCAATCGAGG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 30 0.61
43 19 0.39
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (43 bp):
TGGTCTTATATGTAAATCAATATCGATGCCAATGTCCCAAACA
Found at i:44870733 original size:38 final size:38
Alignment explanation
Indices: 44870691--44870787 Score: 131
Period size: 38 Copynumber: 2.6 Consensus size: 38
44870681 GGCTTAAAGA
*
44870691 CCCGCAGGCTTCGTGCTGGTAAAATATCCAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCCAGGATAAAT
** *
44870729 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTAAAATATCCAGGATAAAT
* * *
44870767 CCCACAGGCCTAGTGCTGGTA
1 CCCGCAGGCTTCGTGCTGGTA
44870788 CTATATTCGG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAAAATATCCAGGATAAAT
Found at i:44870793 original size:38 final size:38
Alignment explanation
Indices: 44870703--44870798 Score: 111
Period size: 38 Copynumber: 2.5 Consensus size: 38
44870693 CGCAGGCTTC
* * * * * *
44870703 GTGCTGGTAAAATATCCAGGTTAAATCCCGCAGGCTTC
1 GTGCTGGTAATATATCCGGGATAAATCCCACAGGCCTA
*
44870741 GTGCTGGTATTATATCCGGGATAAATCCCACAGGCCTA
1 GTGCTGGTAATATATCCGGGATAAATCCCACAGGCCTA
* *
44870779 GTGCTGGTACTATATTCGGG
1 GTGCTGGTAATATATCCGGG
44870799 CCTTCGTGCC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (38 bp):
GTGCTGGTAATATATCCGGGATAAATCCCACAGGCCTA
Found at i:44870915 original size:43 final size:43
Alignment explanation
Indices: 44870791--44870902 Score: 206
Period size: 43 Copynumber: 2.6 Consensus size: 43
44870781 GCTGGTACTA
44870791 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
44870834 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
44870877 TATTTGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
44870903 GTAATGCCGG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.10, C:0.25, G:0.34, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:44876830 original size:15 final size:15
Alignment explanation
Indices: 44876782--44876849 Score: 70
Period size: 14 Copynumber: 4.7 Consensus size: 15
44876772 TAAAGATAAC
*
44876782 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
44876796 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
44876811 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
44876826 AAGAAA-CCAGAGTA
1 AAGAAACCCAGAATA
44876840 AAGAAACCCA
1 AAGAAACCCA
44876850 AGATACGATA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
14 22 0.49
15 22 0.49
16 1 0.02
ACGTcount: A:0.59, C:0.18, G:0.16, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:44876844 original size:29 final size:30
Alignment explanation
Indices: 44876782--44876849 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 30
44876772 TAAAGATAAC
*
44876782 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
*
44876811 GAGAAACCCAGAATAAAGAAA-CC-AGAGTA
1 AAGAAACCCAGAATAAAGAAATCCAAGA-TA
44876840 AAGAAACCCA
1 AAGAAACCCA
44876850 AGATACGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 3 0.09
29 20 0.59
30 11 0.32
ACGTcount: A:0.59, C:0.18, G:0.16, T:0.07
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:44876846 original size:14 final size:15
Alignment explanation
Indices: 44876794--44876849 Score: 62
Period size: 15 Copynumber: 3.8 Consensus size: 15
44876784 GAAAACCGAA
*
44876794 TAAAGAAATCCA-AG
1 TAAAGAAACCCAGAG
* *
44876808 ATAGAGAAACCCAGAA
1 -TAAAGAAACCCAGAG
44876824 TAAAGAAA-CCAGAG
1 TAAAGAAACCCAGAG
44876838 TAAAGAAACCCA
1 TAAAGAAACCCA
44876850 AGATACGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 13 0.38
15 20 0.59
16 1 0.03
ACGTcount: A:0.57, C:0.18, G:0.16, T:0.09
Consensus pattern (15 bp):
TAAAGAAACCCAGAG
Found at i:44879956 original size:48 final size:49
Alignment explanation
Indices: 44879846--44880069 Score: 306
Period size: 49 Copynumber: 4.5 Consensus size: 49
44879836 CTGGTACGCA
* * * *
44879846 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACG
44879895 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATC-GGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACG
** * *
44879943 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCGGGTACACG
* * * *
44879993 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCGGGTACACG
44880044 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
44880070 TGCGACCTCA
Statistics
Matches: 157, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
48 41 0.26
49 42 0.27
50 38 0.24
51 35 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACG
Found at i:44880012 original size:50 final size:48
Alignment explanation
Indices: 44879846--44880069 Score: 304
Period size: 48 Copynumber: 4.5 Consensus size: 48
44879836 CTGGTACGCA
* * *
44879846 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTAT-CGGTACACG
44879895 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGTACACG
** *
44879943 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATC-GGTACACG
* * * *
44879993 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATC-GGTACACG
44880044 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
44880070 TGCGACCTCA
Statistics
Matches: 157, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
48 42 0.27
49 41 0.26
50 38 0.24
51 35 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGTACACG
Found at i:44882250 original size:15 final size:15
Alignment explanation
Indices: 44882202--44882269 Score: 70
Period size: 14 Copynumber: 4.7 Consensus size: 15
44882192 TAAAGATAAC
*
44882202 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
44882216 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
44882231 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
44882246 AAGAAA-CCAGAGTA
1 AAGAAACCCAGAATA
44882260 AAGAAACCCA
1 AAGAAACCCA
44882270 AGATACGATA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
14 22 0.49
15 22 0.49
16 1 0.02
ACGTcount: A:0.59, C:0.18, G:0.16, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:44882264 original size:29 final size:30
Alignment explanation
Indices: 44882202--44882269 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 30
44882192 TAAAGATAAC
*
44882202 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
*
44882231 GAGAAACCCAGAATAAAGAAA-CC-AGAGTA
1 AAGAAACCCAGAATAAAGAAATCCAAGA-TA
44882260 AAGAAACCCA
1 AAGAAACCCA
44882270 AGATACGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 3 0.09
29 20 0.59
30 11 0.32
ACGTcount: A:0.59, C:0.18, G:0.16, T:0.07
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:44882266 original size:14 final size:15
Alignment explanation
Indices: 44882214--44882269 Score: 62
Period size: 15 Copynumber: 3.8 Consensus size: 15
44882204 GAAAACCGAA
*
44882214 TAAAGAAATCCA-AG
1 TAAAGAAACCCAGAG
* *
44882228 ATAGAGAAACCCAGAA
1 -TAAAGAAACCCAGAG
44882244 TAAAGAAA-CCAGAG
1 TAAAGAAACCCAGAG
44882258 TAAAGAAACCCA
1 TAAAGAAACCCA
44882270 AGATACGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 13 0.38
15 20 0.59
16 1 0.03
ACGTcount: A:0.57, C:0.18, G:0.16, T:0.09
Consensus pattern (15 bp):
TAAAGAAACCCAGAG
Found at i:44885378 original size:48 final size:49
Alignment explanation
Indices: 44885255--44885491 Score: 296
Period size: 49 Copynumber: 4.8 Consensus size: 49
44885245 TAGCCAAAGC
* * * * * *
44885255 TATCTGGTACGCATAATAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
44885304 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
44885353 TATC-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
44885402 CATCTGATACACATAGTAGCCTGCACTTTGTACTACACACGTGATCACAGT
1 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
*
44885453 TTTCGGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACA
44885492 TGCGACCTCA
Statistics
Matches: 165, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
48 41 0.25
49 51 0.31
50 36 0.22
51 36 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:44887420 original size:20 final size:20
Alignment explanation
Indices: 44887395--44887434 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
44887385 GGATTAAACT
*
44887395 GAACTTATTCAGAAT-TTTCA
1 GAACTTAATCA-AATATTTCA
44887415 GAACTTAATCAAATATTTCA
1 GAACTTAATCAAATATTTCA
44887435 AAGCTGTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (20 bp):
GAACTTAATCAAATATTTCA
Found at i:44892037 original size:43 final size:43
Alignment explanation
Indices: 44891990--44892091 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 43
44891980 TCCCAGACGT
* ** *
44891990 GGTCTTATATGTAATTCA-ATATCGATGCCTTTGTCCCAAATAG
1 GGTCTTATATGTAAATCAGATA-CGATGCCAATGTCCCAAACAG
* * * *
44892033 GGTCTTACACG-AAATCAGATACGATGCCAATGTCCCAGACAT
1 GGTCTTATATGTAAATCAGATACGATGCCAATGTCCCAAACAG
44892075 GGTCTTATATGTAAATC
1 GGTCTTATATGTAAATC
44892092 TAAATCGAGG
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
42 30 0.64
43 17 0.36
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (43 bp):
GGTCTTATATGTAAATCAGATACGATGCCAATGTCCCAAACAG
Found at i:44892079 original size:42 final size:43
Alignment explanation
Indices: 44891979--44892128 Score: 110
Period size: 43 Copynumber: 3.5 Consensus size: 43
44891969 CAATGCCGAC
* * * * **
44891979 GTCCCAGACGTGGTCTTATATGTAATTCAATATCGATGCCTTT
1 GTCCCAGACATGGTCTTACACGTAAATCAATATCGATGCCAAT
* * *
44892022 GTCCCAAATAGGGTCTTACACG-AAATCAGATA-CGATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAAATCA-ATATCGATGCCAAT
* * * *
44892064 GTCCCAGACATGGTCTTATATGTAAATCTAA-ATCGA-GGCATGT
1 GTCCCAGACATGGTCTTACACGTAAATC-AATATCGATGCCA-AT
* *
44892107 GTCCCACACAAGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
44892129 ATGTCGCAGA
Statistics
Matches: 82, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
42 34 0.41
43 47 0.57
44 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATCAATATCGATGCCAAT
Found at i:44896289 original size:51 final size:50
Alignment explanation
Indices: 44896229--44896361 Score: 169
Period size: 51 Copynumber: 2.6 Consensus size: 50
44896219 TATTGTGAGG
* *
44896229 TCACGTGTGTAGTACTAAGTGCAGGCTACTATACGTACTC-GATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTA-TCAGAT-ACTTAGA
** ** *
44896280 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTATCAGATACTTAGA
*
44896330 TCACGTGTGTAGTACTAAGTGTAGGCTACTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTAC
44896362 GTGTACCGGA
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
50 36 0.49
51 37 0.51
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTATCAGATACTTAGA
Found at i:44896356 original size:50 final size:51
Alignment explanation
Indices: 44896226--44896409 Score: 198
Period size: 50 Copynumber: 3.7 Consensus size: 51
44896216 ATCTATTGTG
***
44896226 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATACGTACTCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCGATAACTT
* * **
44896277 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGAT-GGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTC-GATAACTT
*
44896327 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTAC-CGGATAA-TT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTC-GATAACTT
* * * * *
44896377 -GGTCGCATGTGTATTACTAGGTGCAAGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
44896410 TGCGTACCAG
Statistics
Matches: 112, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 27 0.24
50 47 0.42
51 38 0.34
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (51 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTCGATAACTT
Found at i:44905100 original size:47 final size:49
Alignment explanation
Indices: 44904976--44905104 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
44904966 AGGGTATAAT
*
44904976 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAA
* * * **
44905025 GCCGACGCCATCTCCCAAACATGGTCTTACACTGACTCA-T-CCATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATTGAAATCGAA
** *
44905072 GTTGATGCCATGTCCTAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
44905105 AGCTCACAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
47 28 0.42
48 3 0.04
49 35 0.52
50 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAA
Found at i:44909632 original size:23 final size:23
Alignment explanation
Indices: 44909580--44909677 Score: 80
Period size: 22 Copynumber: 4.3 Consensus size: 23
44909570 GCAGACAAAC
* *
44909580 GGTAAGCTCAATTA-AGCTGAACA
1 GGTAAGCTCCA-TAGAGCTGAAAA
*
44909603 -GTAAGCTCCATAGTGCTGAAAA
1 GGTAAGCTCCATAGAGCTGAAAA
* *
44909625 GGTAAGCTTCGA-AGAGCT-AAAC
1 GGTAAGC-TCCATAGAGCTGAAAA
*
44909647 GGTAAGCT-CATAAGAGCTGAAAC
1 GGTAAGCTCCAT-AGAGCTGAAAA
44909670 GGTAAGCT
1 GGTAAGCT
44909678 TGTACGAGCT
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
20 1 0.02
21 3 0.05
22 32 0.52
23 23 0.37
24 3 0.05
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (23 bp):
GGTAAGCTCCATAGAGCTGAAAA
Found at i:44909653 original size:22 final size:24
Alignment explanation
Indices: 44909617--44909678 Score: 85
Period size: 22 Copynumber: 2.7 Consensus size: 24
44909607 GCTCCATAGT
*
44909617 GCTGAAAAGGTAAGCTTC-GAAGA
1 GCTGAAACGGTAAGCTTCAGAAGA
*
44909640 GCT-AAACGGTAAGC-TCATAAGA
1 GCTGAAACGGTAAGCTTCAGAAGA
44909662 GCTGAAACGGTAAGCTT
1 GCTGAAACGGTAAGCTT
44909679 GTACGAGCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 2 0.06
22 17 0.50
23 14 0.41
24 1 0.03
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.19
Consensus pattern (24 bp):
GCTGAAACGGTAAGCTTCAGAAGA
Found at i:44909686 original size:23 final size:23
Alignment explanation
Indices: 44909617--44909688 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
44909607 GCTCCATAGT
*
44909617 GCTGAAAAGGTAAGCTTCG-AAGA
1 GCTGAAACGGTAAGCTT-GTAAGA
**
44909640 GCT-AAACGGTAAGCTCATAAGA
1 GCTGAAACGGTAAGCTTGTAAGA
*
44909662 GCTGAAACGGTAAGCTTGTACGA
1 GCTGAAACGGTAAGCTTGTAAGA
44909685 GCTG
1 GCTG
44909689 TGGTGAGTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
22 18 0.44
23 23 0.56
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (23 bp):
GCTGAAACGGTAAGCTTGTAAGA
Found at i:44916837 original size:129 final size:129
Alignment explanation
Indices: 44916605--44916858 Score: 280
Period size: 129 Copynumber: 2.0 Consensus size: 129
44916595 TCATATAGGC
** * * *
44916605 ATGTGACCCACTCACACAGCCATATGGCCTATCTTATACGAGCATGGCTCTTCTACACGGTTTAC
1 ATGTGACCCACTCACACAGCCATATGGCCTATCACACACGAGCATGGCTCTTCTAAAAGGTTTAC
**
44916670 CAACATAGTTGTGTGGTTAATCCCACACAAGCTAAGCTTTCA-CACACGGCCAAGGGACACGGGA
66 CAACATAGCAGTGTGGTTAATCCCACACAAGCTAAGCTTT-AGCACACGGCCAAGGGACACGGGA
* * * *
44916734 ATGTGACCCACTCACACGGCCATGTGGCCTATCACACATGAGCATGGCTCTTGTAAAAGGTTTAT
1 ATGTGACCCACTCACACAGCCATATGGCCTATCACACACGAGCATGGCTCTTCTAAAAGGTTTA-
* * * *** * * *
44916799 CGATACA-A-CAGTGTGGTTAATTCCTCATGGGCTGAGCTTTAGTACATGGCCAAGGGACAC
65 CCA-ACATAGCAGTGTGGTTAATCCCACACAAGCTAAGCTTTAGCACACGGCCAAGGGACAC
44916859 AGTCATGTAA
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
128 1 0.01
129 95 0.93
130 3 0.03
131 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (129 bp):
ATGTGACCCACTCACACAGCCATATGGCCTATCACACACGAGCATGGCTCTTCTAAAAGGTTTAC
CAACATAGCAGTGTGGTTAATCCCACACAAGCTAAGCTTTAGCACACGGCCAAGGGACACGGGA
Found at i:44918078 original size:30 final size:30
Alignment explanation
Indices: 44918042--44918101 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
44918032 TTCCCAAGCC
*
44918042 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
44918072 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
44918102 CATATTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:44920711 original size:24 final size:23
Alignment explanation
Indices: 44920667--44920711 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
44920657 TACATCAGTG
44920667 AAAGATTTATTGATTAGAAGCGT
1 AAAGATTTATTGATTAGAAGCGT
*
44920690 AAAGAGTTTCTTGAATTA-AAGC
1 AAAGA-TTTATTG-ATTAGAAGC
44920712 AGGGGAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 10 0.53
25 4 0.21
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (23 bp):
AAAGATTTATTGATTAGAAGCGT
Found at i:44930029 original size:29 final size:29
Alignment explanation
Indices: 44929990--44930068 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
44929980 CTTAATAATC
*
44929990 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
44930020 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
44930049 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
44930069 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:44938132 original size:29 final size:29
Alignment explanation
Indices: 44938093--44938171 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
44938083 CTTAATAATC
*
44938093 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
44938123 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
44938152 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
44938172 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:44967866 original size:39 final size:39
Alignment explanation
Indices: 44967817--44967985 Score: 191
Period size: 39 Copynumber: 4.3 Consensus size: 39
44967807 GCTCCTCGTT
* *
44967817 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATA-CCCGGATTTAGTAACTCGCA
* *
44967857 C-AATGCCTTCGGGACATAACCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATACCCGGATTTAGTAACTCGCA
* * *
44967895 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACAT-ACCCGGATTTAGTAACTCGCA
* * *
44967935 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACAT-ACCCGG-ATTTAGTAACTCGCA
44967974 CAAATGCCTTCG
1 CAAATGCCTTCG
44967986 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
38 17 0.15
39 63 0.55
40 35 0.30
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACATACCCGGATTTAGTAACTCGCA
Found at i:44971912 original size:56 final size:56
Alignment explanation
Indices: 44971816--44971923 Score: 150
Period size: 56 Copynumber: 1.9 Consensus size: 56
44971806 CAATGGCATC
* *
44971816 GATATATGTGTGCGAGTAAGACCACGATTTATACGTTGGCATCGATATGTGACTCT
1 GATATATGTGTGCGAGTAAGACCACGATCTAGACGTTGGCATCGATATGTGACTCT
44971872 GATATATGTGTGCGAGTAAGACC-CTG-TCTAGGACAG-TGGCATCGATATGTGA
1 GATATATGTGTGCGAGTAAGACCAC-GATCTA-GAC-GTTGGCATCGATATGTGA
44971924 TTACATGTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
55 4 0.09
56 42 0.89
57 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGATCTAGACGTTGGCATCGATATGTGACTCT
Found at i:44976657 original size:47 final size:47
Alignment explanation
Indices: 44976566--44976931 Score: 606
Period size: 47 Copynumber: 7.7 Consensus size: 47
44976556 TTAGGATTCT
* *
44976566 ATGTGATGGATGTGAACATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-A-GTGTATATATGTGATAAGGCCTAATGGCCG
44976615 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
44976662 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
44976709 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
44976756 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
44976803 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
44976850 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
44976897 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
44976932 TCCCGAAGGG
Statistics
Matches: 301, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 285 0.95
48 1 0.00
49 15 0.05
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:44979109 original size:19 final size:20
Alignment explanation
Indices: 44979085--44979122 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
44979075 GGTACCACCA
44979085 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
44979104 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
44979123 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:44979435 original size:46 final size:46
Alignment explanation
Indices: 44979350--44979471 Score: 199
Period size: 46 Copynumber: 2.7 Consensus size: 46
44979340 CGCCCCTAAT
* *
44979350 TGAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAG
* *
44979396 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAG
*
44979442 TGAACTCAGACTCAACTCAACAAGTTCGGA
1 TGAACTCGGACTCAACTCAACAAGTTCGGA
44979472 TGCTCAACCA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAG
Found at i:44987565 original size:43 final size:42
Alignment explanation
Indices: 44987495--44987652 Score: 160
Period size: 42 Copynumber: 3.7 Consensus size: 42
44987485 CACACGGTAC
* **
44987495 CATACCAATGCCATATCCCAGATATGGTCTTACATGGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCT
* *
44987537 CGTATCAATGCCAATAGCCCAGGA-ATGGTCTTACATGAAATCT
1 CATATCAATGCC-ATATCCCA-GATATGGTCTTACATGAAATCT
* * *
44987580 CATATCGATGCCATATCTCAGATATGGTCTTACA-CAAAGTCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAA-TCT
* * *
44987622 CATAT-AGATTCCTTATCCCATATATGGTCTT
1 CATATCA-ATGCCATATCCCAGATATGGTCTT
44987653 GCACATAGTC
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
41 5 0.05
42 55 0.57
43 34 0.35
44 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCT
Found at i:44998125 original size:23 final size:23
Alignment explanation
Indices: 44998082--44998125 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
44998072 AGGGCAATTG
* *
44998082 TTATACCTTGTGTAGCGAGCCAC
1 TTATACCTTGTATAGCAAGCCAC
*
44998105 TTATACCTTGTATAGTAAGCC
1 TTATACCTTGTATAGCAAGCC
44998126 TCATGAACCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (23 bp):
TTATACCTTGTATAGCAAGCCAC
Found at i:45000274 original size:47 final size:46
Alignment explanation
Indices: 45000128--45000446 Score: 221
Period size: 49 Copynumber: 6.7 Consensus size: 46
45000118 TTACTTGTAT
* * *
45000128 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATA
* * * **
45000174 GCCAGTGTAAGACCATGCCTGGGACATGGCATCGGCGTAGAGAATGAGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAG-ATGATA
*
45000223 GCCAGTCTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGATA
* * * * *
45000270 GCCAGTGTAAGACGTGTCTGGGACACGCATCAG-CTAAGAGTTG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGATA
* *** * * ** * *
45000314 GCTAGTGTAAGACATGTCTTTTACAGGCATCAGCACGTATAGACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-C-TCGAGATGATA
* * * * * *
45000362 GCTAGTATAAAACCATGTCTGGGACATGGGATCAGCCTCGATGATGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATGATA
**
45000411 GCCAGTGTAAGACCATGTCCAGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
45000447 AACATATCCC
Statistics
Matches: 213, Mismatches: 47, Indels: 23
0.75 0.17 0.08
Matches are distributed among these distances:
44 27 0.13
45 1 0.00
46 22 0.10
47 60 0.28
48 35 0.16
49 61 0.29
50 7 0.03
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATA
Found at i:45001265 original size:54 final size:55
Alignment explanation
Indices: 45001185--45001309 Score: 180
Period size: 54 Copynumber: 2.3 Consensus size: 55
45001175 GCACTTAAAA
* * * *
45001185 TTTAAAGTCAGTGCTGAACACGGGCAGGCCACACGGGCGTGTGTCAT-GTCGTGT
1 TTTAAAGTCAGTGTTGAACACAGGCAGGCCACACGGGCGTGTGTCATGGCCATGT
* * *
45001239 TTTAAAGTCAATGTTGTACACAGGCAGGCCACATGGGCGTGTGTCATGGCCATGT
1 TTTAAAGTCAGTGTTGAACACAGGCAGGCCACACGGGCGTGTGTCATGGCCATGT
45001294 TTTAAAGTCAGTGTTG
1 TTTAAAGTCAGTGTTG
45001310 CACATGGGCT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
54 42 0.68
55 20 0.32
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.28
Consensus pattern (55 bp):
TTTAAAGTCAGTGTTGAACACAGGCAGGCCACACGGGCGTGTGTCATGGCCATGT
Found at i:45010691 original size:16 final size:15
Alignment explanation
Indices: 45010650--45010692 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
45010640 ATGATGATAA
45010650 ATATTAATATATAATT
1 ATATTAAT-TATAATT
**
45010666 ATATCCATTATAATCT
1 ATATTAATTATAAT-T
45010682 ATATTAATTAT
1 ATATTAATTAT
45010693 TATCAACTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATTAATTATAATT
Found at i:45013638 original size:38 final size:38
Alignment explanation
Indices: 45013582--45013656 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
45013572 TATGTGTATT
* * *
45013582 CGGGTTAAATCCAGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCAGCAGGCCTAGTGCTGGTATTATATC
*
45013620 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCAGCAGGCCTAGTGCTGGTATTATAT
45013657 TCAGGCCTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCAGCAGGCCTAGTGCTGGTATTATATC
Found at i:45013816 original size:43 final size:43
Alignment explanation
Indices: 45013654--45013821 Score: 212
Period size: 43 Copynumber: 3.9 Consensus size: 43
45013644 GCTGGTATTA
* * *
45013654 TATTCAGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCAGTGATGTG
* *
45013697 TATTTGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCAGTGATGTG
* * * * *
45013740 TATTC-GACGCTTTGTGCCTAGCAAGCTTCATGCCGGTGATGTG
1 TATTCGGGC-CTTCGTGCCTAGCAGGCTTAATGCCAGTGATGTG
* *
45013783 TATTCGGGCCTTCGTGCCTAGTAGGCGTAATGCCAGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCAGTGA
45013822 AATGATATGT
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
42 2 0.02
43 102 0.96
44 2 0.02
ACGTcount: A:0.15, C:0.23, G:0.31, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAATGCCAGTGATGTG
Found at i:45016479 original size:46 final size:46
Alignment explanation
Indices: 45016412--45016585 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
45016402 TGTAACCCGC
45016412 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
45016458 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
45016508 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
45016550 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
45016586 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 36 0.33
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:45016578 original size:92 final size:93
Alignment explanation
Indices: 45016420--45016590 Score: 299
Period size: 92 Copynumber: 1.8 Consensus size: 93
45016410 GCCCATAAGT
* *
45016420 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
45016485 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
45016513 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
45016577 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
45016591 CAAATATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 46 0.62
93 28 0.38
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:45019005 original size:30 final size:30
Alignment explanation
Indices: 45018961--45019049 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
45018951 CAAAGATAAC
45018961 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
45018990 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
45019020 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
45019050 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:45019009 original size:15 final size:15
Alignment explanation
Indices: 45018961--45019040 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
45018951 CAAAGATAAC
*
45018961 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
45018975 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
45018990 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
45019005 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
45019020 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
45019035 AAGAAA
1 AAGAAA
45019041 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:45019049 original size:15 final size:15
Alignment explanation
Indices: 45018972--45019049 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
45018962 AGAAAACCGA
45018972 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
45018987 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
45019001 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
45019016 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
45019032 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
45019047 ATA
1 ATA
45019050 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:45022838 original size:27 final size:27
Alignment explanation
Indices: 45022808--45022985 Score: 164
Period size: 27 Copynumber: 6.6 Consensus size: 27
45022798 ATATTGAGCC
* *
45022808 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
45022835 CGCACACTTAGTGCCACGTAATCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
45022862 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
45022890 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
45022917 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
45022944 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
45022971 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45022986 GTACAATTTA
Statistics
Matches: 127, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 26 0.20
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:45025579 original size:27 final size:26
Alignment explanation
Indices: 45025549--45025615 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 26
45025539 TATTTTGGAA
*
45025549 AAATTACAATTTCGCCCCTAAGCTCGT
1 AAATTA-AATTTCGCCCCAAAGCTCGT
**
45025576 AAATTAAAACTTTTTCCCCAAAGCTCGT
1 AAATT-AAA-TTTCGCCCCAAAGCTCGT
45025604 AAATTAAATTTC
1 AAATTAAATTTC
45025616 AGCCTATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 3 0.09
27 10 0.29
28 21 0.62
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
AAATTAAATTTCGCCCCAAAGCTCGT
Found at i:45027800 original size:41 final size:41
Alignment explanation
Indices: 45027742--45027904 Score: 263
Period size: 41 Copynumber: 4.0 Consensus size: 41
45027732 AAAAGCCACT
* * *
45027742 GGTGGATCCACGTTCGTCAAGCAACCATGCAATCCTTAATC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCTATCCTCAATC
*
45027783 GGTGGATCCACGGTCGTCAAGCAACCATTCTATCCTCAATC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCTATCCTCAATC
*
45027824 GGTGGATCCACGGTCGTCAAGCAACCATTCTATCCTCAATC
1 GGTGGATCCACGGTCGTCAAGCAACCATGCTATCCTCAATC
* *
45027865 AGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 GGTGGATCCACGGTCGTCAAGCAACCATGCTATCCTCAAT
45027905 TTCTTCCTCC
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 115 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (41 bp):
GGTGGATCCACGGTCGTCAAGCAACCATGCTATCCTCAATC
Found at i:45028203 original size:27 final size:27
Alignment explanation
Indices: 45028151--45028526 Score: 248
Period size: 27 Copynumber: 14.0 Consensus size: 27
45028141 GGCAAATCTA
* * * *
45028151 CAAACCAATGGTATTTCGGTAGTTTTG
1 CAAATCAAGGGTATTTCTGTAATTTTG
* * * *
45028178 CAAACCAATGGTATTTCTATAATTTTT
1 CAAATCAAGGGTATTTCTGTAATTTTG
*
45028205 AAAAGTCAAGGGTATTTCTGTAATTTTG
1 CAAA-TCAAGGGTATTTCTGTAATTTTG
* * * *
45028233 TAAATTAGGGGTATTTCTGTAATTTTC
1 CAAATCAAGGGTATTTCTGTAATTTTG
*
45028260 CAAATCAAGGGTATTTCGGTAACTTTT-
1 CAAATCAAGGGTATTTCTGTAA-TTTTG
*
45028287 CAAATC-AGGGTATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCT-GTAATTTTG
* *
45028313 CAAATCGAGGGTATTT-TGTTAATTTTA
1 CAAATCAAGGGTATTTCTG-TAATTTTG
* * * *
45028340 CAAGTCGAGGGTATTTCGGTAATTTTA
1 CAAATCAAGGGTATTTCTGTAATTTTG
* ** * * * **
45028367 TAGGTCGAGAGTATTTCAGTAATTTCA
1 CAAATCAAGGGTATTTCTGTAATTTTG
* *
45028394 CAAATCAGGGGTATTT-TGGTAATTTTA
1 CAAATCAAGGGTATTTCT-GTAATTTTG
* *
45028421 CAAA-CTAGGGGTATTT-TGGTAATTTTT
1 CAAATC-AAGGGTATTTCT-GTAATTTTG
* *
45028448 CTAATCGAGGGTATTT-TGGTAATTTTG
1 CAAATCAAGGGTATTTCT-GTAATTTTG
* * *
45028475 TAAACCAAGGGTA-TTCAGTAATTTTG
1 CAAATCAAGGGTATTTCTGTAATTTTG
* * *
45028501 CAAACCAAGGGTATTTCAGTAGTTTT
1 CAAATCAAGGGTATTTCTGTAATTTT
45028527 ACCCTACAAG
Statistics
Matches: 292, Mismatches: 45, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
25 4 0.01
26 44 0.15
27 216 0.74
28 28 0.10
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCTGTAATTTTG
Found at i:45028487 original size:54 final size:53
Alignment explanation
Indices: 45028131--45028516 Score: 280
Period size: 54 Copynumber: 7.2 Consensus size: 53
45028121 TCACCCTACA
* * * * * * * * *
45028131 AGGGTGTTTTGGCAAATCTACAAACCAATGGTATTTCGGTAGTTTTGCAAACC
1 AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATC
* * * ** *
45028184 AATGGTATTTCT-ATAATTTTTA-AAAGTCAAGGGTATTTCTGTAATTTTGTAAATT
1 -AGGGTATTT-TGGTAA-TTTTACAAA-TCAAGGGTATTTCGGTAATTTTACAAATC
*
45028239 AGGGGTATTTCT-GTAATTTTCCAAATCAAGGGTATTTCGGTAACTTTT-CAAATC
1 A-GGGTATTT-TGGTAATTTTACAAATCAAGGGTATTTCGGTAA-TTTTACAAATC
* * * *
45028293 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGTTAATTTTACAAGTC
1 AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATC
* * ** * * * *
45028346 GAGGGTATTTCGGTAATTTTATAGGTCGAGAGTATTTCAGTAATTTCACAAATC
1 -AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATC
* * * *
45028400 AGGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTTCTAATC
1 A-GGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTTACAAATC
** * * * *
45028454 GAGGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTTGCAAACC
1 -AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATC
45028507 AAGGGTATTT
1 -AGGGTATTT
45028517 CAGTAGTTTT
Statistics
Matches: 264, Mismatches: 55, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
52 5 0.02
53 65 0.25
54 147 0.56
55 47 0.18
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATC
Found at i:45028536 original size:27 final size:27
Alignment explanation
Indices: 45028480--45028577 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
45028470 TTTTGTAAAC
* *
45028480 CAAGGGTA-TTCAGTAATTTT-GCAAA
1 CAAGGGTATTTCAGTAATTTTACCATA
* *
45028505 CCAAGGGTATTTCAGTAGTTTTACCCTA
1 -CAAGGGTATTTCAGTAATTTTACCATA
*
45028533 CAAGGGCATTTCAGTAATTTTACCATA
1 CAAGGGTATTTCAGTAATTTTACCATA
45028560 -AAGGGGTATTTCAGTAAT
1 CAA-GGGTATTTCAGTAAT
45028578 ACTAGCCTAC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
26 10 0.16
27 49 0.80
28 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTACCATA
Found at i:45028756 original size:32 final size:32
Alignment explanation
Indices: 45028715--45028781 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
45028705 CACTCATGAT
45028715 GGCCTCAACCATCACCTCAAAGCTCCCACACG
1 GGCCTCAACCATCACCTCAAAGCTCCCACACG
45028747 GGCCTCAACCATCACCTCAAAGCTCCCACACG
1 GGCCTCAACCATCACCTCAAAGCTCCCACACG
45028779 GGC
1 GGC
45028782 GCTCGCGCGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.27, C:0.46, G:0.15, T:0.12
Consensus pattern (32 bp):
GGCCTCAACCATCACCTCAAAGCTCCCACACG
Found at i:45035705 original size:14 final size:15
Alignment explanation
Indices: 45035677--45035705 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45035667 CTCTTTCAAG
45035677 GACAAGAATAATCCA
1 GACAAGAATAATCCA
45035692 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
45035706 TATGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Done.