Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 141 of 349
Found at i:45271603 original size:21 final size:21
Alignment explanation
Indices: 45271561--45271606 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 21
45271551 AATATGCATG
45271561 TATTAAAAATAATAATAATAA
1 TATTAAAAATAATAATAATAA
*
45271582 TATTTAAAAAATAATTATTAATAA
1 TA-TT-AAAAATAA-TAATAATAA
45271606 T
1 T
45271607 GTTACATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 2 0.10
23 8 0.38
24 9 0.43
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TATTAAAAATAATAATAATAA
Found at i:45271697 original size:25 final size:24
Alignment explanation
Indices: 45271668--45271732 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
45271658 AACTAATACT
*
45271668 AATAATAGTAAAACTAATAATATA-A
1 AATAATA-TAAAA-TAAAAATATAGA
*
45271693 CATAATATAAAATAAAAATATAGA
1 AATAATATAAAATAAAAATATAGA
45271717 AATAATACTAATAATA
1 AATAATA-TAA-AATA
45271733 TATACGAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 9 0.26
24 12 0.35
25 9 0.26
26 4 0.12
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (24 bp):
AATAATATAAAATAAAAATATAGA
Found at i:45273316 original size:21 final size:21
Alignment explanation
Indices: 45273290--45273336 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
45273280 TAAAATCTGC
**
45273290 AACTTTAATGTGCTCCACTGT
1 AACTTTAATCAGCTCCACTGT
*
45273311 AACTTTGATCAGCTCCACTGT
1 AACTTTAATCAGCTCCACTGT
45273332 AACTT
1 AACTT
45273337 CAGGGCTCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (21 bp):
AACTTTAATCAGCTCCACTGT
Found at i:45273610 original size:14 final size:14
Alignment explanation
Indices: 45273587--45273616 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
45273577 TTGATTTTTG
*
45273587 AAACATAAATTGAA
1 AAACAGAAATTGAA
45273601 AAACAGAAATTGAA
1 AAACAGAAATTGAA
45273615 AA
1 AA
45273617 TACCTCAACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.17
Consensus pattern (14 bp):
AAACAGAAATTGAA
Found at i:45273629 original size:85 final size:85
Alignment explanation
Indices: 45273459--45273755 Score: 425
Period size: 85 Copynumber: 3.4 Consensus size: 85
45273449 CATGTGACCC
* * * * *
45273459 GAGGCTCCACTCACCTCTCACAATATGA-TCTGACTTTTGATAAAAACAGAATTTGAAAAATAGA
1 GAGGCTCAACTCACCTCTCACAATATGAGT-TGA-TTTT--T-GAAACATAAATTGAAAAACAGA
*
45273523 AACTGAAAATACCTCAGCGTGTCCT
61 AATTGAAAATACCTCAGCGTGTCCT
45273548 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATAAATTGAAAAACAGAAATTG
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATAAATTGAAAAACAGAAATTG
* *
45273613 AAAATACCTCAACGTGTCTT
66 AAAATACCTCAGCGTGTCCT
* * *
45273633 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACGTAAATTGAAAAACAGAAATTA
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATAAATTGAAAAACAGAAATTG
*
45273698 AAAATACCTCAGCGTGTCCC
66 AAAATACCTCAGCGTGTCCT
*
45273718 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
45273756 TTTTTTGAAA
Statistics
Matches: 193, Mismatches: 14, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
85 157 0.81
86 1 0.01
88 4 0.02
89 30 0.16
90 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (85 bp):
GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACATAAATTGAAAAACAGAAATTG
AAAATACCTCAGCGTGTCCT
Found at i:45273804 original size:79 final size:79
Alignment explanation
Indices: 45273681--45273834 Score: 254
Period size: 79 Copynumber: 1.9 Consensus size: 79
45273671 GAAACGTAAA
*
45273681 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
45273746 GTTGATTTTTTTTT
66 GTTGATTTTTTTTT
* * * **
45273760 TTGAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
45273825 GTTGATTTTT
66 GTTGATTTTT
45273835 GAAACAGAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 69 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (79 bp):
TTGAAAAACAGAAATTAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTTT
Found at i:45273832 original size:164 final size:165
Alignment explanation
Indices: 45273459--45273852 Score: 528
Period size: 164 Copynumber: 2.4 Consensus size: 165
45273449 CATGTGACCC
* * * * *
45273459 GAGGCTCCACTCACCTCTCACAATATGA-TCTGACTTTTGATAAAAACAGAATTTGAAAAATAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGT-TGA-TTTT--T-GAAACAGAAATTGAAAAACAGA
* *
45273523 AACTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGA
61 AACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT--
45273588 AACATAAATTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTT
124 ---ATAAATTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTT
*
45273633 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAC-GTAAATTGAAAAACAGAAATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAG-AAATTGAAAAACAGAAACT
* ***
45273697 AAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TTTTT
65 AAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTATAAAT
* *
45273761 TGAAAGATAGAAATTGAAAATACCTCAACGTGTCTT
130 TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTT
45273797 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAGAAA-T-AAAAACA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAGAAATTGAAAAACA
45273853 TCAGAATACC
Statistics
Matches: 203, Mismatches: 14, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
162 7 0.03
163 1 0.00
164 82 0.40
165 1 0.00
169 1 0.00
170 76 0.37
171 1 0.00
173 4 0.02
174 29 0.14
175 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.28
Consensus pattern (165 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAGAAATTGAAAAACAGAAACTA
AAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTATAAATT
GAAAAACAGAAATTGAAAATACCTCAACGTGTCTT
Found at i:45282170 original size:22 final size:22
Alignment explanation
Indices: 45282142--45282186 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
45282132 CATGGATGAA
*
45282142 TGAATAAATGACAAATGAATGT
1 TGAATAAATAACAAATGAATGT
*
45282164 TGAATAAATAACGAATGAATGT
1 TGAATAAATAACAAATGAATGT
45282186 T
1 T
45282187 AGTCATGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.04, G:0.18, T:0.29
Consensus pattern (22 bp):
TGAATAAATAACAAATGAATGT
Found at i:45286235 original size:23 final size:23
Alignment explanation
Indices: 45286204--45286247 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
45286194 ATTGAGTATT
* *
45286204 AAAAGTATATATATAATATAGAC
1 AAAAATATATACATAATATAGAC
*
45286227 AAAAATATATGCATAATATAG
1 AAAAATATATACATAATATAG
45286248 TATTGAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (23 bp):
AAAAATATATACATAATATAGAC
Found at i:45286323 original size:13 final size:12
Alignment explanation
Indices: 45286303--45286421 Score: 67
Period size: 11 Copynumber: 10.1 Consensus size: 12
45286293 TGTGATATTA
45286303 AAATATATACAT
1 AAATATATACAT
*
45286315 AACATATATA-AA
1 AA-ATATATACAT
*
45286327 AAATAATATTA-AA
1 AAAT-ATA-TACAT
45286340 AATATATATACAT
1 AA-ATATATACAT
45286353 -AATATAT--AT
1 AAATATATACAT
45286362 AGAATATATACAT
1 A-AATATATACAT
*
45286375 -AATATAGTA-TT
1 AAATATA-TACAT
45286386 AAAATATATACAT
1 -AAATATATACAT
*
45286399 -AACATATACAT
1 AAATATATACAT
*
45286410 -AACATATACAT
1 AAATATATACAT
45286421 A
1 A
45286422 TTAGAAATGA
Statistics
Matches: 88, Mismatches: 5, Indels: 28
0.73 0.04 0.23
Matches are distributed among these distances:
9 2 0.02
11 43 0.49
12 15 0.17
13 26 0.30
14 2 0.02
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.33
Consensus pattern (12 bp):
AAATATATACAT
Found at i:45286326 original size:22 final size:22
Alignment explanation
Indices: 45286297--45286421 Score: 104
Period size: 22 Copynumber: 5.9 Consensus size: 22
45286287 GAATAATGTG
45286297 ATAT-TAAAATATATACATAAC
1 ATATATAAAATATATACATAAC
45286318 ATATATAAAA-A-ATA-AT---
1 ATATATAAAATATATACATAAC
* *
45286334 AT-TAAAAATATATATACATAAT
1 ATATATAAA-ATATATACATAAC
* *
45286356 ATATATAGAATATATACATAAT
1 ATATATAAAATATATACATAAC
45286378 ATAGTATTAAAATATATACATAAC
1 ATA-TA-TAAAATATATACATAAC
* * *
45286402 ATATACATAACATATACATA
1 ATATATAAAATATATACATA
45286422 TTAGAAATGA
Statistics
Matches: 85, Mismatches: 8, Indels: 21
0.75 0.07 0.18
Matches are distributed among these distances:
15 5 0.06
16 3 0.04
17 1 0.01
18 3 0.04
19 4 0.05
20 3 0.04
21 5 0.06
22 35 0.41
23 8 0.09
24 18 0.21
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.34
Consensus pattern (22 bp):
ATATATAAAATATATACATAAC
Found at i:45286329 original size:24 final size:23
Alignment explanation
Indices: 45286304--45286417 Score: 97
Period size: 24 Copynumber: 4.8 Consensus size: 23
45286294 GTGATATTAA
* *
45286304 AATATATACATAACATATATAAAA
1 AATATATA-ATAACATATATACAT
* *
45286328 AATAATATTAAAAATATATATACAT
1 AAT-ATA-TAATAACATATATACAT
45286353 AATATAT-ATAGA-ATATATACAT
1 AATATATAATA-ACATATATACAT
* *
45286375 AATATAGTATTAAAATATATACAT
1 AATATA-TAATAACATATATACAT
*
45286399 AACATATACATAACATATA
1 AATATATA-ATAACATATA
45286418 CATATTAGAA
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
22 18 0.24
23 6 0.08
24 31 0.42
25 17 0.23
26 2 0.03
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (23 bp):
AATATATAATAACATATATACAT
Found at i:45286340 original size:12 final size:13
Alignment explanation
Indices: 45286318--45286376 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 13
45286308 TATACATAAC
45286318 ATATATAAAAAAT
1 ATATATAAAAAAT
*
45286331 A-ATATTAAAAAT
1 ATATATAAAAAAT
* *
45286343 ATATATACATAAT
1 ATATATAAAAAAT
* *
45286356 ATATATAGAATAT
1 ATATATAAAAAAT
*
45286369 ATACATAA
1 ATATATAA
45286377 TATAGTATTA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
12 11 0.31
13 25 0.69
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (13 bp):
ATATATAAAAAAT
Found at i:45286357 original size:11 final size:11
Alignment explanation
Indices: 45286343--45286421 Score: 86
Period size: 11 Copynumber: 7.0 Consensus size: 11
45286333 TATTAAAAAT
45286343 ATATATACATA
1 ATATATACATA
* *
45286354 ATATATATAGA
1 ATATATACATA
45286365 ATATATACATA
1 ATATATACATA
* *
45286376 ATATAGTATTAAA
1 ATATA-TA-CATA
45286389 ATATATACATA
1 ATATATACATA
*
45286400 ACATATACATA
1 ATATATACATA
*
45286411 ACATATACATA
1 ATATATACATA
45286422 TTAGAAATGA
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
11 46 0.81
12 4 0.07
13 7 0.12
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (11 bp):
ATATATACATA
Found at i:45286420 original size:6 final size:6
Alignment explanation
Indices: 45286391--45286422 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
45286381 GTATTAAAAT
45286391 ATATAC ATA-AC ATATAC ATA-AC ATATAC ATAT
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATAT
45286423 TAGAAATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.42
6 14 0.58
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (6 bp):
ATATAC
Found at i:45286477 original size:11 final size:11
Alignment explanation
Indices: 45286461--45286486 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
45286451 TACTATTAAT
45286461 AATACTACATA
1 AATACTACATA
45286472 AATACTACATA
1 AATACTACATA
45286483 AATA
1 AATA
45286487 TGTACATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (11 bp):
AATACTACATA
Found at i:45290026 original size:24 final size:22
Alignment explanation
Indices: 45289984--45290027 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
45289974 TTAAAGTGTA
45289984 AATATGAAAAATTTGAAGGGAT
1 AATATGAAAAATTTGAAGGGAT
*
45290006 AATAGTGAAAATATTTTAAGGG
1 AATA-TGAAAA-ATTTGAAGGG
45290028 TGGAATGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.48, C:0.00, G:0.23, T:0.30
Consensus pattern (22 bp):
AATATGAAAAATTTGAAGGGAT
Found at i:45290255 original size:29 final size:30
Alignment explanation
Indices: 45290222--45290293 Score: 71
Period size: 31 Copynumber: 2.4 Consensus size: 30
45290212 TTGGTAATAT
*
45290222 TTTATAATTATTTAATTAGATA-ATTATTA
1 TTTATAATTATTTAATAAGATATATTATTA
*
45290251 TTTATTTAA-TATTTTAATAAGATATTTTATTA
1 TTTA--TAATTA-TTTAATAAGATATATTATTA
45290283 TTT-T-ATTATTT
1 TTTATAATTATTT
45290294 TATTTAGTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
28 4 0.11
29 7 0.19
30 2 0.06
31 14 0.39
32 9 0.25
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (30 bp):
TTTATAATTATTTAATAAGATATATTATTA
Found at i:45290284 original size:8 final size:8
Alignment explanation
Indices: 45290273--45290297 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
45290263 TTTAATAAGA
45290273 TATTTTAT
1 TATTTTAT
45290281 TATTTTAT
1 TATTTTAT
45290289 TATTTTAT
1 TATTTTAT
45290297 T
1 T
45290298 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:45292614 original size:43 final size:42
Alignment explanation
Indices: 45292469--45292737 Score: 193
Period size: 43 Copynumber: 6.3 Consensus size: 42
45292459 TTATGTGAAA
* *
45292469 AAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGC-CTTTTTTCAC
** * * * * * *
45292512 AATTGGCACTATAGAACATGACCTTTAGCATG-CTTTTATCAT
1 AAACGCCGCTAAAGAACATGACCTTTAGC-GGCCTTTTTTCAC
* * * *
45292554 AAATGCTGCTAAAGAACATAACCTTTAGCGGCACTTTTTTTAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGC-CTTTTTTCAC
* * * * *
45292597 AAACGCCGCTATAGAACATGTCCTTTAGTGGCACTTTTATGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGC-CTTTTTTCAC
* * * *
45292640 AAATGTCGCTAAA-AAGCATGACCTTTAGCGGCGTTTTTTTAC
1 AAACGCCGCTAAAGAA-CATGACCTTTAGCGGCCTTTTTTCAC
* * * *
45292682 AAACACCACTAAAGAACA-GTACCTTTAGCGCCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATG-ACCTTTAGCGGC-CTTTTTTCAC
**
45292725 AAATTCCGCTAAA
1 AAACGCCGCTAAA
45292738 AGTATCGTTC
Statistics
Matches: 172, Mismatches: 47, Indels: 14
0.74 0.20 0.06
Matches are distributed among these distances:
41 2 0.01
42 61 0.35
43 108 0.63
44 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCCTTTTTTCAC
Found at i:45292738 original size:85 final size:85
Alignment explanation
Indices: 45292474--45292737 Score: 259
Period size: 85 Copynumber: 3.1 Consensus size: 85
45292464 TGAAAAAACG
* ** ** *
45292474 CCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTTCCACAATTGGCACTATAGAACA-TGACCTTT
1 CCGCTAAAGAACATGACCTTTAGCGGCG-TTTTTTTACAAACGCCACTATAGAACAGT-ACCTTT
* * *
45292538 AGC-ATGCTTTTATCATAAATG
64 AGCGACGCTTTTATCACAAATT
* * * *
45292559 CTGCTAAAGAACATAACCTTTAGCGGCACTTTTTTTACAAACGCCGCTATAGAACATGT-CCTTT
1 CCGCTAAAGAACATGACCTTTAGCGGC-GTTTTTTTACAAACGCCACTATAGAACA-GTACCTTT
* * * *
45292623 AGTGGCACTTTTATGACAAATGT
64 AGCGACGCTTTTATCACAAAT-T
* *
45292646 -CGCTAAA-AAGCATGACCTTTAGCGGCGTTTTTTTACAAACACCACTAAAGAACAGTACCTTTA
1 CCGCTAAAGAA-CATGACCTTTAGCGGCGTTTTTTTACAAACGCCACTATAGAACAGTACCTTTA
*
45292709 GCGCCGCTTTTATCACAAATT
65 GCGACGCTTTTATCACAAATT
45292730 CCGCTAAA
1 CCGCTAAA
45292738 AGTATCGTTC
Statistics
Matches: 144, Mismatches: 27, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
84 3 0.02
85 107 0.74
86 33 0.23
87 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (85 bp):
CCGCTAAAGAACATGACCTTTAGCGGCGTTTTTTTACAAACGCCACTATAGAACAGTACCTTTAG
CGACGCTTTTATCACAAATT
Found at i:45293088 original size:21 final size:21
Alignment explanation
Indices: 45293063--45293112 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
45293053 TTCTGCTCTG
45293063 CTCTGCTTCCCTCGCTGCTAC
1 CTCTGCTTCCCTCGCTGCTAC
*
45293084 CTCTGCTTCCCTCGCTGCTGC
1 CTCTGCTTCCCTCGCTGCTAC
*
45293105 CTCCGCTT
1 CTCTGCTT
45293113 TAAGCTATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.02, C:0.48, G:0.16, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCTAC
Found at i:45293576 original size:13 final size:14
Alignment explanation
Indices: 45293550--45293578 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
45293540 ACTAACAAAA
45293550 AATTAAACCATTAT
1 AATTAAACCATTAT
45293564 AATTAAA-CATTAT
1 AATTAAACCATTAT
45293577 AA
1 AA
45293579 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:45298588 original size:9 final size:9
Alignment explanation
Indices: 45298574--45298735 Score: 102
Period size: 9 Copynumber: 17.8 Consensus size: 9
45298564 TAAGTATAAT
45298574 TAAGTTATG
1 TAAGTTATG
45298583 TAAGTTATG
1 TAAGTTATG
* * *
45298592 ATATGATATA
1 -TAAGTTATG
* *
45298602 T-ATTTATA
1 TAAGTTATG
45298610 T-A-TTATG
1 TAAGTTATG
45298617 TAAGTTATG
1 TAAGTTATG
*
45298626 TAAGTAATG
1 TAAGTTATG
*
45298635 TGAGTTATG
1 TAAGTTATG
45298644 TAAGTTATG
1 TAAGTTATG
* *
45298653 ATATGATATATA
1 -TAAG-T-TATG
45298665 TAAGTTAT-
1 TAAGTTATG
45298673 TAAGTTATG
1 TAAGTTATG
*
45298682 TATGTTATG
1 TAAGTTATG
45298691 -AGAGTTATG
1 TA-AGTTATG
45298700 TAAGTTATG
1 TAAGTTATG
* *
45298709 ATATGATATATA
1 -TAAG-T-TATG
45298721 TAAGTTAT-
1 TAAGTTATG
45298729 TAAGTTA
1 TAAGTTA
45298736 AGATCCAAAG
Statistics
Matches: 122, Mismatches: 19, Indels: 25
0.73 0.11 0.15
Matches are distributed among these distances:
7 5 0.04
8 23 0.19
9 65 0.53
10 15 0.12
11 8 0.07
12 6 0.05
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:45298681 original size:56 final size:56
Alignment explanation
Indices: 45298576--45298735 Score: 239
Period size: 56 Copynumber: 2.8 Consensus size: 56
45298566 AGTATAATTA
* *
45298576 AGTTATGTAAGTTATGATATGATATATATTTATATATTATGTAAGTTATGTAAGTAATGTG
1 AGTTATGTAAGTTATGATATGATATATA--TA-A-GTTAT-TAAGTTATGTAAGTAATGAG
* *
45298637 AGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATGTATGTTATGAG
1 AGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATGTAAGTAATGAG
45298693 AGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTA
1 AGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTA
45298736 AGATCCAAAG
Statistics
Matches: 95, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
56 60 0.63
57 4 0.04
58 1 0.01
59 2 0.02
61 28 0.29
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (56 bp):
AGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATGTAAGTAATGAG
Found at i:45298909 original size:18 final size:18
Alignment explanation
Indices: 45298888--45298923 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
45298878 TCATTTATAG
45298888 CAAAGTTATCTTTTATTC
1 CAAAGTTATCTTTTATTC
45298906 CAAAGTTATCTTTTATTC
1 CAAAGTTATCTTTTATTC
45298924 TTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.50
Consensus pattern (18 bp):
CAAAGTTATCTTTTATTC
Found at i:45299173 original size:10 final size:10
Alignment explanation
Indices: 45299142--45299179 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
45299132 ATATTGATAA
45299142 AAAAATATTT
1 AAAAATATTT
* *
45299152 ATAAGT-TTT
1 AAAAATATTT
45299161 AAAAATATTT
1 AAAAATATTT
45299171 AAAAATATT
1 AAAAATATT
45299180 AAATATTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
9 7 0.30
10 16 0.70
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (10 bp):
AAAAATATTT
Found at i:45299181 original size:19 final size:19
Alignment explanation
Indices: 45299142--45299182 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
45299132 ATATTGATAA
* * *
45299142 AAAAATATTTATAAGTTTT
1 AAAAATATTTAAAAATATT
45299161 AAAAATATTTAAAAATATT
1 AAAAATATTTAAAAATATT
45299180 AAA
1 AAA
45299183 TATTAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AAAAATATTTAAAAATATT
Found at i:45299195 original size:22 final size:22
Alignment explanation
Indices: 45299169--45299212 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
45299159 TTAAAAATAT
*
45299169 TTAAA-AATATTAAATATTAAAA
1 TTAAACAATATT-AATATAAAAA
*
45299191 TTAAACATTATTAATATAAAAA
1 TTAAACAATATTAATATAAAAA
45299213 AATAATTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
TTAAACAATATTAATATAAAAA
Found at i:45299978 original size:25 final size:25
Alignment explanation
Indices: 45299950--45299997 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
45299940 CAGAAAACAA
45299950 GAGAAGCAGCAGAGGGATGCCGACG
1 GAGAAGCAGCAGAGGGATGCCGACG
* * * *
45299975 GAGATGTAGTAGAGGGCTGCCGA
1 GAGAAGCAGCAGAGGGATGCCGA
45299998 TGATGATGCG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.17, G:0.44, T:0.10
Consensus pattern (25 bp):
GAGAAGCAGCAGAGGGATGCCGACG
Found at i:45302470 original size:21 final size:21
Alignment explanation
Indices: 45302446--45302485 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
45302436 CTATAAAACA
45302446 CTAAACCAT-AAACCCTAAATC
1 CTAAA-CATAAAACCCTAAATC
45302467 CTAAACATAAAACCCTAAA
1 CTAAACATAAAACCCTAAA
45302486 CCCAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.17
Consensus pattern (21 bp):
CTAAACATAAAACCCTAAATC
Found at i:45302555 original size:28 final size:29
Alignment explanation
Indices: 45302441--45302548 Score: 107
Period size: 28 Copynumber: 3.8 Consensus size: 29
45302431 CCTAACTATA
* * *
45302441 AAACACTAAACCATAAACCCTAAA-TCCT
1 AAACATTAAACCCTAAACCCTAAATTACT
* * *
45302469 AAACATAAAACCCTAAACCCAAAATAAC-
1 AAACATTAAACCCTAAACCCTAAATTACT
*
45302497 AAATC-TTAACCCCTAAA-CCTAAATTACT
1 AAA-CATTAAACCCTAAACCCTAAATTACT
*
45302525 AAACATTAAACCCTAAACTCTAAA
1 AAACATTAAACCCTAAACCCTAAA
45302549 GCCTAAAATC
Statistics
Matches: 63, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
27 9 0.14
28 47 0.75
29 7 0.11
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (29 bp):
AAACATTAAACCCTAAACCCTAAATTACT
Found at i:45316754 original size:50 final size:48
Alignment explanation
Indices: 45316642--45316821 Score: 163
Period size: 50 Copynumber: 3.7 Consensus size: 48
45316632 CGGGTAAGGT
* * * * *
45316642 GCCGATGCCATGTCCCAAACATGGTATTAAACT-GACTATCATCATCGA-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATAAT--ATG
* ** *
45316691 GCTGATGCCATGTCCTGGACATGGTCTTACACTAGCTCTCGCATATTCAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATAAT-ATG
* * *
45316741 GCCGATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATG
45316789 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG
45316822 TTCACACAAG
Statistics
Matches: 107, Mismatches: 19, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
46 10 0.09
47 15 0.14
48 12 0.11
49 30 0.28
50 36 0.34
51 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATG
Found at i:45321540 original size:46 final size:45
Alignment explanation
Indices: 45321470--45321644 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
45321460 TGTAACCCGC
*
45321470 CCATAAGTGAACTCGGACTTAACTCAACGAGCTCGGGCGTTCGTCT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTCT
* *
45321516 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTCT
* * * * ***
45321562 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGAATATTCG-CAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGCTCG-GGCTTCGTC-T
*
45321609 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
45321645 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 16, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
45 2 0.02
46 67 0.64
47 32 0.30
48 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTCT
Found at i:45321591 original size:93 final size:93
Alignment explanation
Indices: 45321478--45321648 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
45321468 GCCCATAAGT
* ** *
45321478 GAACTCGGACTTAACTCAACGAGCTCGGGCGTTCGTC-TCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCG-CATCCATAAGTGAACTCGGACTCAACTCA
45321542 ACGAGCTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
* *
45321571 GAACTCGGACTCAACTCAACGAGTTCGAATATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
45321636 CGAGTTCGGATGC
66 CGAGCTCGGATGC
45321649 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:45321664 original size:46 final size:46
Alignment explanation
Indices: 45321473--45321664 Score: 153
Period size: 46 Copynumber: 4.2 Consensus size: 46
45321463 AACCCGCCCA
* * ** * **
45321473 TAAGTGAACTCGGACTTAACTCAACGAGCTCGGGCGTTCGTC-TCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
*
45321518 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATCC
* * * ** *
45321567 TCA-CGAACTCGGACTCAACTCAACGAGTTCGAATATTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
45321611 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CATCC
45321659 T-AGTGA
1 TAAGTGA
45321665 CATGTCACTT
Statistics
Matches: 116, Mismatches: 19, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 3 0.03
46 69 0.59
47 29 0.25
48 8 0.07
49 2 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
Found at i:45329143 original size:46 final size:44
Alignment explanation
Indices: 45329000--45329143 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 44
45328990 CCCGCCCATA
**
45329000 AGTGAACTCGGACTCAACTCAACGACCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
45329047 CA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
45329093 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
45329139 AGTGA
1 AGTGA
45329144 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 28 0.37
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:45334421 original size:46 final size:45
Alignment explanation
Indices: 45334370--45334492 Score: 174
Period size: 46 Copynumber: 2.6 Consensus size: 45
45334360 CGTAGCAGTC
*
45334370 GCATGTCCCAGACATGTCTTATACTGGCTTACGTCCCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTATACTGGCTT-CGTCCCAAGGCCGAT
* *
45334416 GCATGTCCCAGACATGTCTTATACTGGCATTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTATACTGGC-TTCGTCCCAAGGCCGAT
*
45334462 GCCATGTCCCAGACATGGTCTTACACTGGCT
1 G-CATGTCCCAGACAT-GTCTTATACTGGCT
45334493 CTCATAATGT
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
46 41 0.59
47 17 0.24
48 12 0.17
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTATACTGGCTTCGTCCCAAGGCCGAT
Found at i:45340246 original size:80 final size:80
Alignment explanation
Indices: 45340062--45340286 Score: 274
Period size: 82 Copynumber: 2.8 Consensus size: 80
45340052 TTGAATGCTG
* * * * * * *
45340062 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
45340126 CGTGTGCGAGTTGTTAAA
64 CG-GTGCGAGTTGTTAAA
**
45340144 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
45340209 -GTGCGAGTTGTTAAA
65 GGTGCGAGTTGTTAAA
* * * * *
45340224 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
45340287 TGAACGAGGA
Statistics
Matches: 126, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
79 33 0.26
80 38 0.30
81 1 0.01
82 50 0.40
83 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
GTGCGAGTTGTTAAA
Found at i:45340268 original size:39 final size:40
Alignment explanation
Indices: 45340062--45340286 Score: 260
Period size: 40 Copynumber: 5.6 Consensus size: 40
45340052 TTGAATGCTG
* * * * *
45340062 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAA
*
45340102 TCCGGATTAAGAT-CCGAAGGCATTCGTGTGCGAGTTGTTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTC--GTGCGAGTTGTTAAA
45340144 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
45340184 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* * **
45340224 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* * *
45340263 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
45340287 TGAACGAGGA
Statistics
Matches: 166, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 34 0.20
40 95 0.57
41 4 0.02
42 27 0.16
43 6 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:45340306 original size:79 final size:80
Alignment explanation
Indices: 45340140--45340321 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 80
45340130 TGCGAGTTGT
** * *
45340140 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** ** *
45340205 ATTCGTGCGAGTTGT
66 ATTCGAACGAGGAGC
* * *
45340220 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
*
45340284 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
* *
45340299 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
45340322 TACGTGATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:45348033 original size:40 final size:40
Alignment explanation
Indices: 45347903--45348124 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
45347893 TTGAATGCTG
* * * * *
45347903 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAA
* * * *
45347943 TCCGGATTAAAGTTCCGAAGGCATTTGTGCGAG-AG-TAAA
1 TCCGGGTT-AAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
45347982 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
45348022 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* **
45348062 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* * *
45348101 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
45348125 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
38 22 0.14
39 44 0.27
40 74 0.46
41 15 0.09
42 7 0.04
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:45348115 original size:119 final size:119
Alignment explanation
Indices: 45347903--45348124 Score: 272
Period size: 119 Copynumber: 1.9 Consensus size: 119
45347893 TTGAATGCTG
* * *
45347903 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAAGTTCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAAGTCCCGAAGGCATT
* * *
45347968 TGTGCGAGAGTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 TGTGCGAGACTAAAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* * * *
45348022 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTT-AAGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAG-TGAATAAATCCGGATTAAAGTCCCGAAGGCA
* *
45348084 -TTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
64 TTTGTGCGAG--ACTAAAACCGGGCTAAGTCCCGAAGGCATT
45348125 TGAACGAGGA
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
117 8 0.09
118 13 0.15
119 58 0.67
120 8 0.09
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAAGTCCCGAAGGCATT
TGTGCGAGACTAAAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:45348144 original size:79 final size:79
Alignment explanation
Indices: 45347952--45348159 Score: 251
Period size: 79 Copynumber: 2.6 Consensus size: 79
45347942 ATCCGGATTA
*
45347952 AAGTTCCGAAGGCATTTGTGCGA-GAGTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT
1 AAGTCCCGAAGGCATTTGTGCGAGGAGTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT
** * *
45348016 GTTAAATCCGGGTT
66 ACTAAAACCGGGCT
* ** *
45348030 AAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGT
1 AAGTCCCGAAGGCATTTGTGCGAGGAG-TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT
45348094 TACTAAAACCGGGCT
65 TACTAAAACCGGGCT
* ** * *
45348109 ATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATCCCGAAGG
1 AAGTCCCGAAGGCATTTGTGCGAGGAG-TAAATCCGGGTTAAGTCCCGAAGG
45348160 TACGTGATTT
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
78 36 0.33
79 46 0.42
80 28 0.25
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (79 bp):
AAGTCCCGAAGGCATTTGTGCGAGGAGTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT
ACTAAAACCGGGCT
Found at i:45348144 original size:119 final size:119
Alignment explanation
Indices: 45347903--45348159 Score: 263
Period size: 119 Copynumber: 2.2 Consensus size: 119
45347893 TTGAATGCTG
* * * *
45347903 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAAGTTCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAAGTCCCGAAGGCATT
* * * ** ** *
45347968 TGTGCGAGAGTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 TGTGCGAGACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * *
45348022 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTT-AAGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCTAAG-TGAATAAATCCGGATTAAAGTCCCGAAGGCA
* * * *
45348084 -TTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTTGTGCGAG--ACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
45348141 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
45348160 TACGTGATTT
Statistics
Matches: 114, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
117 8 0.07
118 28 0.25
119 70 0.61
120 8 0.07
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAAGTCCCGAAGGCATT
TGTGCGAGACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:45350831 original size:45 final size:45
Alignment explanation
Indices: 45350729--45350992 Score: 141
Period size: 45 Copynumber: 5.9 Consensus size: 45
45350719 TTGGCTTGAA
* * * * **
45350729 GGAAACGAATAAGA-CATGGTTGAAAGATATTATGGCAGT-ATACC
1 GGAAACGTATAAGACCATAGTTGAAAGACACTATGGCA-TCATAAT
*
45350773 GG-AACTGAATAAGACCATAGTTGAAAGACACTATGGCATCATAAT
1 GGAAAC-GTATAAGACCATAGTTGAAAGACACTATGGCATCATAAT
* ** ** * *
45350818 GGAAACGTGTAAGACCATAGCAGAAAGACGTTGTGGCATCATGACT
1 GGAAACGTATAAGACCATAGTTGAAAGACACTATGGCATCAT-AAT
* * * * * * * *
45350864 -CAGACGAACAAGACCATGGTTAAAAGACATTATGGCATC--AAG
1 GGAAACGTATAAGACCATAGTTGAAAGACACTATGGCATCATAAT
* *
45350906 GCGAGAATGTATAAGACCATGGTTGAAAGACACTATGGCAT--TAA-
1 G-GA-AACGTATAAGACCATAGTTGAAAGACACTATGGCATCATAAT
* * * *
45350950 GACGAGAATGAATAAGACGATGGTTGAAAGACACTATGGCATC
1 G--GA-AACGTATAAGACCATAGTTGAAAGACACTATGGCATC
45350993 CTTCAATCAT
Statistics
Matches: 174, Mismatches: 35, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 13 0.07
45 152 0.87
46 5 0.03
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (45 bp):
GGAAACGTATAAGACCATAGTTGAAAGACACTATGGCATCATAAT
Found at i:45351115 original size:12 final size:12
Alignment explanation
Indices: 45351098--45351122 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45351088 TGAATATGTG
45351098 AAAATAAAATAA
1 AAAATAAAATAA
45351110 AAAATAAAATAA
1 AAAATAAAATAA
45351122 A
1 A
45351123 GAACACACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:45359812 original size:43 final size:43
Alignment explanation
Indices: 45359762--45359850 Score: 106
Period size: 43 Copynumber: 2.1 Consensus size: 43
45359752 ATATGTGATT
** * **
45359762 TTGATATGTGTTTACGGGTAAGACCTTGTCTGGGACAGTGGCA
1 TTGATATGTGACTACAGGTAAGACCACGTCTGGGACAGTGGCA
* * *
45359805 TTGATATGTGACTACATGTAAGACCACGTCTGGGACATTTGCA
1 TTGATATGTGACTACAGGTAAGACCACGTCTGGGACAGTGGCA
45359848 TTG
1 TTG
45359851 TACGACTTGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
TTGATATGTGACTACAGGTAAGACCACGTCTGGGACAGTGGCA
Found at i:45364561 original size:27 final size:27
Alignment explanation
Indices: 45364523--45364583 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
45364513 TGATCTATAA
45364523 AATTTCAAATTAATCTCATTCAAACAC
1 AATTTCAAATTAATCTCATTCAAACAC
45364550 AATTTCAAATTAATCTCATTCAAACAC
1 AATTTCAAATTAATCTCATTCAAACAC
45364577 AATTTCA
1 AATTTCA
45364584 TTCAATTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.34
Consensus pattern (27 bp):
AATTTCAAATTAATCTCATTCAAACAC
Found at i:45364594 original size:31 final size:30
Alignment explanation
Indices: 45364530--45364595 Score: 102
Period size: 27 Copynumber: 2.3 Consensus size: 30
45364520 TAAAATTTCA
45364530 AATTAATCTCATTCAAACACAATTTCA---
1 AATTAATCTCATTCAAACACAATTTCATTC
45364557 AATTAATCTCATTCAAACACAATTTCATTC
1 AATTAATCTCATTCAAACACAATTTCATTC
45364587 AATTTAATC
1 AA-TTAATC
45364596 CAACAACACA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
27 27 0.77
30 2 0.06
31 6 0.17
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.36
Consensus pattern (30 bp):
AATTAATCTCATTCAAACACAATTTCATTC
Found at i:45376491 original size:45 final size:45
Alignment explanation
Indices: 45376441--45376529 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
45376431 ATGTATTAAT
45376441 ATATTTCATATTAAAATGATATAATAATAACATATAATATATTTC
1 ATATTTCATATTAAAATGATATAATAATAACATATAATATATTTC
*
45376486 ATATTTCATATTAAAATGGTATAATAATAACATATAATATATTT
1 ATATTTCATATTAAAATGATATAATAATAACATATAATATATTT
45376530 AATAATATAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (45 bp):
ATATTTCATATTAAAATGATATAATAATAACATATAATATATTTC
Found at i:45376702 original size:22 final size:23
Alignment explanation
Indices: 45376658--45376709 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
45376648 TATATTTAAT
* * *
45376658 AAAAGCAAGCAATTAGTTCTAAA
1 AAAAACAAGCAATTAGATATAAA
45376681 AAAAACAAGCAATTA-ATATAAA
1 AAAAACAAGCAATTAGATATAAA
*
45376703 AGAAACA
1 AAAAACA
45376710 TAATTTAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.62, C:0.12, G:0.10, T:0.17
Consensus pattern (23 bp):
AAAAACAAGCAATTAGATATAAA
Found at i:45381085 original size:12 final size:12
Alignment explanation
Indices: 45381070--45381105 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
45381060 TTCTAAAATA
*
45381070 AAATTTAAATTT
1 AAATTTAAACTT
45381082 AAATTTAAACTT
1 AAATTTAAACTT
*
45381094 AAACTTAAACTT
1 AAATTTAAACTT
45381106 TTTATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
AAATTTAAACTT
Found at i:45382035 original size:18 final size:18
Alignment explanation
Indices: 45382014--45382072 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 18
45382004 CCTAAAAAAA
45382014 TAAAAAAATTATAATTTT
1 TAAAAAAATTATAATTTT
45382032 T--AAAAA--ATAATTTT
1 TAAAAAAATTATAATTTT
* *
45382046 TAACAAGATTATAATTTT
1 TAAAAAAATTATAATTTT
*
45382064 TTAAAAAAT
1 TAAAAAAAT
45382073 AAAATTTCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
14 9 0.28
16 8 0.25
18 15 0.47
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (18 bp):
TAAAAAAATTATAATTTT
Found at i:45382610 original size:17 final size:18
Alignment explanation
Indices: 45382585--45382621 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
45382575 AAAATTTAAA
45382585 TTAAAA-ATAAAAATAATT
1 TTAAAATATAAAAA-AATT
45382603 TTAAAATATAAAAAAATT
1 TTAAAATATAAAAAAATT
45382621 T
1 T
45382622 CCAAATTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAAATATAAAAAAATT
Found at i:45382627 original size:18 final size:19
Alignment explanation
Indices: 45382587--45382627 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
45382577 AATTTAAATT
*
45382587 AAAA-ATAAAAATAATTTT
1 AAAATATAAAAATAATTTC
45382605 AAAATATAAAAA-AATTTC
1 AAAATATAAAAATAATTTC
*
45382623 CAAAT
1 AAAAT
45382628 TTCAATGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAATATAAAAATAATTTC
Found at i:45383152 original size:13 final size:14
Alignment explanation
Indices: 45383123--45383159 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
45383113 ATATTAATTT
45383123 ATTTTAAAAATAAA
1 ATTTTAAAAATAAA
*
45383137 ATTTTTAAAA-AAA
1 ATTTTAAAAATAAA
45383150 A-TTTAAAAAT
1 ATTTTAAAAAT
45383160 TGTTTATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
12 7 0.35
13 4 0.20
14 9 0.45
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATTTTAAAAATAAA
Found at i:45384116 original size:18 final size:18
Alignment explanation
Indices: 45384089--45384166 Score: 63
Period size: 18 Copynumber: 4.3 Consensus size: 18
45384079 TTGAATATTG
*
45384089 TAAAAAATATTAAAATAT
1 TAAAATATATTAAAATAT
45384107 TAAAATATATTAAAATGA-
1 TAAAATATATTAAAAT-AT
* *
45384125 CAAAATATA--AAAAAAT
1 TAAAATATATTAAAATAT
*
45384141 TATAAATAATTATTAAAATTT
1 TA-AAAT-A-TATTAAAATAT
45384162 TAAAA
1 TAAAA
45384167 AATTAATTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
15 1 0.02
16 5 0.11
17 4 0.09
18 24 0.51
19 3 0.06
20 3 0.06
21 7 0.15
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (18 bp):
TAAAATATATTAAAATAT
Found at i:45384166 original size:8 final size:9
Alignment explanation
Indices: 45384091--45384166 Score: 50
Period size: 10 Copynumber: 8.4 Consensus size: 9
45384081 GAATATTGTA
*
45384091 AAAAATATT
1 AAAATTATT
45384100 AAAA-TATT
1 AAAATTATT
45384108 AAAATATATT
1 AAAAT-TATT
* *
45384118 AAAATGA-C
1 AAAATTATT
**
45384126 AAAATATAAA
1 AAAAT-TATT
*
45384136 AAAATTATA
1 AAAATTATT
45384145 AATAATTATT
1 AA-AATTATT
45384155 AAAATT-TT
1 AAAATTATT
45384163 AAAA
1 AAAA
45384167 AATTAATTGA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
8 19 0.34
9 15 0.27
10 22 0.39
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (9 bp):
AAAATTATT
Found at i:45385069 original size:20 final size:18
Alignment explanation
Indices: 45385028--45385066 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
45385018 TTTATGATTA
*
45385028 TTTA-TAATTTTTACCAT
1 TTTAGTAATTTTTACAAT
45385045 TTTAGTAATATTTTACAAT
1 TTTAGTAAT-TTTTACAAT
45385064 TTT
1 TTT
45385067 TAGAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 4 0.21
19 11 0.58
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTAGTAATTTTTACAAT
Found at i:45385204 original size:20 final size:22
Alignment explanation
Indices: 45385179--45385221 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
45385169 ATATTTATAA
*
45385179 TTTTTACCATT-TT-TAATATT
1 TTTTTACAATTCTTATAATATT
45385199 TTTTTACAATTCTTATAATATT
1 TTTTTACAATTCTTATAATATT
45385221 T
1 T
45385222 GAAATTTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 2 0.10
22 8 0.40
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTTACAATTCTTATAATATT
Found at i:45387918 original size:19 final size:19
Alignment explanation
Indices: 45387878--45387918 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
45387868 TGTTAGATTT
*
45387878 TGATTTAAGGATTAAATTG
1 TGATTTAAGGATTAAATCG
* *
45387897 TGATTTAGGGATTGAATCG
1 TGATTTAAGGATTAAATCG
45387916 TGA
1 TGA
45387919 AAATGTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.27, T:0.39
Consensus pattern (19 bp):
TGATTTAAGGATTAAATCG
Found at i:45388642 original size:35 final size:35
Alignment explanation
Indices: 45388547--45388631 Score: 143
Period size: 35 Copynumber: 2.4 Consensus size: 35
45388537 GATTAGTTCT
* *
45388547 TATGAGCAATAGTGTGTTTCAGATGGTTTAACTCG
1 TATGAGCATTAGTGTGTTTCAGATGGTTTAATTCG
45388582 TATGAGCATTAGTGTGTTTCAGATGGTTTAATTCG
1 TATGAGCATTAGTGTGTTTCAGATGGTTTAATTCG
*
45388617 TATGAGCATTGGTGT
1 TATGAGCATTAGTGT
45388632 ATTTTGGATG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.24, C:0.09, G:0.27, T:0.40
Consensus pattern (35 bp):
TATGAGCATTAGTGTGTTTCAGATGGTTTAATTCG
Found at i:45389617 original size:54 final size:54
Alignment explanation
Indices: 45389531--45389645 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
45389521 CAAGTCAGTT
* * *
45389531 AGTTACATGGCCTAGCATACGGCTTGGAACACGGGCA-TGTGGGGCTATTTCGAG
1 AGTTACACGACCTAGCACACGGCTTGGAACACGGG-AGTGTGGGGCTATTTCGAG
* *
45389585 AGTTACACGACCTAGCACACGGCTTGGCACACGGGAGTGTGGGGTTATTTCGAG
1 AGTTACACGACCTAGCACACGGCTTGGAACACGGGAGTGTGGGGCTATTTCGAG
45389639 AGTTACA
1 AGTTACA
45389646 GGCCTGGTAC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 1 0.02
54 54 0.98
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (54 bp):
AGTTACACGACCTAGCACACGGCTTGGAACACGGGAGTGTGGGGCTATTTCGAG
Found at i:45391037 original size:30 final size:30
Alignment explanation
Indices: 45391003--45391083 Score: 153
Period size: 30 Copynumber: 2.7 Consensus size: 30
45390993 TTTTTGAGCA
*
45391003 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTGCCAAAGTC
45391033 TAGGGGCAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTGCCAAAGTC
45391063 TAGGGGCAAAATGGTCATTTT
1 TAGGGGCAAAATGGTCATTTT
45391084 ATCGAAGATG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTGCCAAAGTC
Found at i:45391574 original size:46 final size:47
Alignment explanation
Indices: 45391430--45391743 Score: 268
Period size: 46 Copynumber: 6.6 Consensus size: 47
45391420 TTTGTGTGCT
* * *
45391430 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GACGAGAGCC
* ** ** * **
45391476 AGTGTAAGACCATGTCTGGGACATGGCATCAGTATTAAGACGAGTGGT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACGAGAGCC
45391524 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACG-AGAGCC
* * *
45391570 AGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGA--TGTGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGACGAGAGCC
* * * *
45391614 AGTGTAAGACCATGTCTGGGACATGACATCGGAAC-GGATATGCGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATG-CATCGG-CCTCGAGA--CGAGAGCC
* * *
45391664 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGA-GACGAGAGCC
*
45391713 AGTGTAAGACCATGTCCGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCG
45391744 ACAACTGACC
Statistics
Matches: 215, Mismatches: 36, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.05
45 17 0.08
46 66 0.31
47 29 0.13
48 21 0.10
49 36 0.17
50 33 0.15
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACGAGAGCC
Found at i:45391668 original size:94 final size:93
Alignment explanation
Indices: 45391430--45391743 Score: 299
Period size: 94 Copynumber: 3.3 Consensus size: 93
45391420 TTTGTGTGCT
45391430 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTAT-GAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG--ACGA-TATCGAGAGCCAGTGTAAGACCATGTCT
** * *
45391493 GGGACATGGCATCAGTATTAAGACGA-GTGGT-
63 GGGACATGGCATC-G-GCTACGACGATGTAGTC
* *
45391524 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-CGTA-AGCCAGTGTAAGA-CATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG--ACGATATCG-AGAGCCAGTGTAAGACCATGTCT
45391586 GGGACAT-GCATCGGCTACGA-GATGT-GTC
63 GGGACATGGCATCGGCTACGACGATGTAGTC
*
45391614 AGTGTAAGACCATGTCTGGGACATGACATCGGAACGGATATGCGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGG-AC-GATAT-CGAGAGCCAGTGTAAGACCATGT
* * *
45391679 TTGGGACATGGCATCGGCCT-CGATGATGATAGCC
61 CTGGGACATGGCATCGG-CTACGACGATG-TAGTC
*
45391713 AGTGTAAGACCATGTCCGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
45391744 ACAACTGACC
Statistics
Matches: 190, Mismatches: 12, Indels: 31
0.82 0.05 0.13
Matches are distributed among these distances:
89 4 0.02
90 15 0.08
91 17 0.09
92 14 0.07
93 15 0.08
94 62 0.33
95 15 0.08
96 10 0.05
97 6 0.03
98 1 0.01
99 30 0.16
100 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACGATATCGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGGCATCGGCTACGACGATGTAGTC
Found at i:45398753 original size:777 final size:774
Alignment explanation
Indices: 45397129--45398928 Score: 2858
Period size: 777 Copynumber: 2.3 Consensus size: 774
45397119 TAATAAGAAA
* * *
45397129 ATCAAGGACCTCAAAGCATGCAATAATAAGTTATTGGCCATGAAGTTGGATATCATGGTCAAATA
1 ATCAAGGACCTCAAAGCAAGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATA
*
45397194 GCTTTAGTGATCCCTTTCCAATCATTGAAAAAAAAGAGGGAGTAGTGAAGTGAAGTATGATGGTT
66 GCTTCAGTGATCCCTTTCCAATCATTGAAAAAAAAGAGGGAGTAGTGAAGTGAAGTATGAT-G-T
* *
45397259 TTTTTTTGGGACAATAATAAAAACAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGATAATT
129 TTTTTTTGGAACAATAAT--AAACAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGGTAATT
45397324 CTTCTGCTATTTGCACAAATGCTCACTCAATCTAGAAATTTTGTACTCCTTTCCTTATTTTGAAT
192 CTTCTGCT-TTTGCACAAATGCTCACTCAATCTAGAAATTTTGTACTCCTTTCCTTATTTTGAAT
* *
45397389 CATATATTATTGTCTTTTTTGTGTTAGAACATTAATTAATGGTTAAATTACTTTGAGATGAGGTA
256 CATATATTATTCTCTTTTTTGTGTTAGAACATTAATTAATGGTTAAATTAATTTGAGATGAGGTA
* *
45397454 GTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAATTGTGATGATTTTATT
321 GTTGAGATTCATTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTGATGATTTTATT
* * * *
45397519 TTTCCCAATATATATTTATTCAAATATTGCTAAAGGGGGAGATTGTTAACATATTTGAAGGCAAG
386 TTTCCCAACATATATTTATTAAAATATTCCTAAAGGGAGAGATTGTTAACATATTTGAAGGCAAG
*
45397584 GAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCTACAACTTGTGGCTCTGTTTCATTGC
451 GAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTCTGTTTCATTGC
45397649 TTTACTTGTCTATTTTAGAGTTGGAAAATTTTAGAACAAAAGCATTGGACAATTTGTTTTGGAGA
516 TTTACTTGTCTATTTTAGAGTTGGAAAATTTTAGAACAAAAGCATTGGACAATTTGTTTTGGAGA
* * *
45397714 TATTTAGACAAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTATAGTTGAAGACTTGAAGATT
581 TATTTACACAAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGATC
* *
45397779 AGTTACACGTGGATCAAATAAAGTCACTTTCCATTATTATAAGGATTGAATTACACTAAGACTCT
646 AGTTACACGTGGATCAAATAAAGTCACTTTCCATTATTATAAGCATTGAATTACACCAAGACTCT
*
45397844 TATGGAATTATGCCAAGACTATTCTATGCTAATTTTTAGCTTTACTTTATAGAAAAATGATTAG
711 TATGGAATTATGCCAAGACTATCCTATGCTAATTTTTAGCTTTACTTTATAGAAAAATGATTAG
* * * *
45397908 GTTAAGGACCTCAAAGCAAGCAACAATAAGCTATTTGCCATGAAGTTGGATATCAAGGTCAAATA
1 ATCAAGGACCTCAAAGCAAGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATA
* * *
45397973 GCTTCAGTGACCCCTTTGCAATCATTGAAAAAAAGAGAGGGAGTAGTGAAGTGAACTATGATGTT
66 GCTTCAGTGATCCCTTTCCAATCATTGAAAAAAA-AGAGGGAGTAGTGAAGTGAAGTATGATGTT
* * * **
45398038 TTTTTTGGTACAATAATAAACATAAGTTAGGGTTTCAATTCTCATTAATCTAGTATGGTGTTTCT
130 TTTTTTGGAACAATAATAAACA-AACTTAGGGTTTCAATTCTCATTAGTCTAGTATGGTAATTCT
* * * * *
45398103 TTTGCTTTGTGCACAAATGTTTACTCAATCTAGTAACTTTGTACTCCTTTCCTTATTTTGAATCA
194 TCTGCTTT-TGCACAAATGCTCACTCAATCTAGAAATTTTGTACTCCTTTCCTTATTTTGAATCA
* *
45398168 TATGTTATTCTCTTTTTTGTGTTA-ATACATTCATTAATGGTTAAATTAATTTGAGATGAGGTAG
258 TATATTATTCTCTTTTTTGTGTTAGA-ACATTAATTAATGGTTAAATTAATTTGAGATGAGGTAG
*
45398232 TTGAGATTCATTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTGACTGTGATGATTTTATTT
322 TTGAGATTCATTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTGATGATTTTATTT
*
45398297 TTCCC-ACATATATTTATTAAAATATTCCTAAAGGGAGAGATTGTTAACATATTTGAAGGTAAGG
387 TTCCCAACATATATTTATTAAAATATTCCTAAAGGGAGAGATTGTTAACATATTTGAAGGCAAGG
45398361 AAAAATTCTATGGTTGTTTCTATGGCTGAAAATTA-T-GCCACAACTTGTGGCTCTGTTTCATTG
452 AAAAATTCTATGGTTGTTTCTATGGCTG-AAA-TAGTGGCCACAACTTGTGGCTCTGTTTCATTG
45398424 CTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACAAAAGCATTGGACAATTTGTTTTGGA
515 CTTTACTTGTCTA-TTTTAGAGTTGGAAAATTTTAGAACAAAAGCATTGGACAATTTGTTTTGGA
*
45398489 GATATTTACACAAGTTAGAGCCCAAAACATGAAGACTAATTGAGTTAAAGTTGAAGACTTGAAGA
579 GATATTTACACAAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGA
* * * * *
45398554 TCAGTTACACGTGGATCAAATAAAGTCATTTTCCATTATTGTAATCATTGGATTACACCGAGACT
644 TCAGTTACACGTGGATCAAATAAAGTCACTTTCCATTATTATAAGCATTGAATTACACCAAGACT
* * *
45398619 CTTATGGAATTATGTCAAGATTATCCTATGCTGATTTTTAGCTTTACTTTATAGAAAAAT-AGTT
709 CTTATGGAATTATGCCAAGACTATCCTATGCTAATTTTTAGCTTTACTTTATAGAAAAATGA-TT
45398683 AG
773 AG
* * *
45398685 ATCAAGGACATCAAAGCAAGCAACACTAAACTATTGGCCATGAAGTTGGATATCATGGTCAAATA
1 ATCAAGGACCTCAAAGCAAGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATA
* *
45398750 GCTTCAGTGATCCCTTTCCAAACATTGAAAAAAAAAGAGGGAGTAGTGAAGTGAAGTGTGA--TT
66 GCTTCAGTGATCCCTTTCCAATCATTG-AAAAAAAAGAGGGAGTAGTGAAGTGAAGTATGATGTT
*
45398813 TTTTTTGGAACAATAATAAATAAAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGGTAATTC
130 TTTTTTGGAACAATAAT-AA-ACAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGGTAATTC
* * *
45398878 TTCTGCTCTCTGCACAAATGCTCACTTAATCTAGCAATTTTGTACTCCTTT
193 TTCTGCT-TTTGCACAAATGCTCACTCAATCTAGAAATTTTGTACTCCTTT
45398929 TGTGACAGCC
Statistics
Matches: 934, Mismatches: 75, Indels: 27
0.90 0.07 0.03
Matches are distributed among these distances:
775 18 0.02
776 211 0.23
777 562 0.60
778 27 0.03
779 90 0.10
780 26 0.03
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (774 bp):
ATCAAGGACCTCAAAGCAAGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATA
GCTTCAGTGATCCCTTTCCAATCATTGAAAAAAAAGAGGGAGTAGTGAAGTGAAGTATGATGTTT
TTTTTGGAACAATAATAAACAAACTTAGGGTTTCAATTCTCATTAGTCTAGTATGGTAATTCTTC
TGCTTTTGCACAAATGCTCACTCAATCTAGAAATTTTGTACTCCTTTCCTTATTTTGAATCATAT
ATTATTCTCTTTTTTGTGTTAGAACATTAATTAATGGTTAAATTAATTTGAGATGAGGTAGTTGA
GATTCATTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTGATGATTTTATTTTTCC
CAACATATATTTATTAAAATATTCCTAAAGGGAGAGATTGTTAACATATTTGAAGGCAAGGAAAA
ATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTCTGTTTCATTGCTTTAC
TTGTCTATTTTAGAGTTGGAAAATTTTAGAACAAAAGCATTGGACAATTTGTTTTGGAGATATTT
ACACAAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGATCAGTTA
CACGTGGATCAAATAAAGTCACTTTCCATTATTATAAGCATTGAATTACACCAAGACTCTTATGG
AATTATGCCAAGACTATCCTATGCTAATTTTTAGCTTTACTTTATAGAAAAATGATTAG
Found at i:45399258 original size:13 final size:13
Alignment explanation
Indices: 45399235--45399268 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
45399225 AAACATATTA
45399235 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
45399249 TAAAATTTTGTGT
1 TAAAATTTTGTGT
45399262 TAGAAAT
1 TA-AAAT
45399269 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:45400663 original size:40 final size:40
Alignment explanation
Indices: 45400571--45400775 Score: 333
Period size: 40 Copynumber: 5.2 Consensus size: 40
45400561 GGACTAAGAT
* * *
45400571 CCGAAGGTATTTGTGCTAGTGACTATATCCGGGCTAA-TC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
45400610 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
45400650 CCGAAGGCATTTGTGTGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
45400690 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
45400730 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
45400769 CCGAAGG
1 CCGAAGG
45400776 TACTTGGGTT
Statistics
Matches: 156, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
39 49 0.31
40 107 0.69
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:45404737 original size:39 final size:39
Alignment explanation
Indices: 45404615--45404824 Score: 246
Period size: 39 Copynumber: 5.3 Consensus size: 39
45404605 GCCACCACAA
* * * * *
45404615 AGCCCAGATATAATACTAGCAC-AAAGCCTACGGGACTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TT
* * *
45404654 AGCCCGGATATAACAATACTAGCAC-AAAGCCTACGGGACTTT
1 AGCCCGGATATAAC---ACCAGCACGAATGCCTTCGGGAC-TT
*
45404696 AGCCCGGATATAACAGCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
45404735 AGCCCGGATATAACACCAGCACGAATGCCTTCGGG-CTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
45404773 AGCCCGGATATAACACCAGCACGAATGCCTTCAGAACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
45404812 AGCCCGAATATAA
1 AGCCCGGATATAA
45404825 TTCTCCATTA
Statistics
Matches: 156, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
38 36 0.23
39 69 0.44
40 12 0.08
42 39 0.25
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:45404793 original size:77 final size:79
Alignment explanation
Indices: 45404615--45404824 Score: 248
Period size: 77 Copynumber: 2.7 Consensus size: 79
45404605 GCCACCACAA
* * * * * *
45404615 AGCCCAGATATAATACTAGCAC-AAAGCCTACGGGACTTTAGCCCGGATATAACAATACTAGCAC
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAAC-A-ACCAGCAC
45404679 AAAGCCTACGGGACTTT
63 AAAGCCTACGGGACTTT
*
45404696 AGCCCGGATATAACAGCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAC-ACCAGCACGAA
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCAC-AA
* *
45404760 TGCCTTCGGG-C-TT
65 AGCCTACGGGACTTT
* * *
45404773 AGCCCGGATATAACACCAGCACGAATGCCTTCAGAACTTAGCCCGAATATAA
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
45404825 TTCTCCATTA
Statistics
Matches: 114, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
77 50 0.44
78 8 0.07
79 10 0.09
81 34 0.30
82 12 0.11
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (79 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACAACCAGCACAAA
GCCTACGGGACTTT
Found at i:45406139 original size:39 final size:39
Alignment explanation
Indices: 45406085--45406162 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
45406075 CTCTCCCTGA
*
45406085 ATCCAAATTCGGCATATTTAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
45406124 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
45406163 CAACGTTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.29, G:0.08, T:0.24
Consensus pattern (39 bp):
ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
Found at i:45408859 original size:776 final size:774
Alignment explanation
Indices: 45406852--45414183 Score: 9776
Period size: 766 Copynumber: 9.5 Consensus size: 774
45406842 GGGCTGTCAC
* *
45406852 ATGA-TTTATTTTTCCCTAAATATATTTATTCAAAAATTTCTAAAGGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* * *
45406916 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTTTATGGCTGAAACAGTGGCCACAACTTATGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
* *
45406981 TATTTCATTGCTTTACTTGTCTA-TTTTAGAGTTGGAAAATTGTAGAATAAAAGCATTGGACTCT
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTAT
* * *
45407045 TTGTTTTGGAGACATTTGGATGAA-TTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
196 TTGTTTTGGAGATATTTAGA-CAAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
*
45407109 AGACTTGAAGATCGATTACTCGTGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
260 AGACTTGAAGATCGATTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
* * *
45407174 ACACCGAGACTC-T-T---ATTAAG-CAACGATTATTCTATACTAATTTTTAGCTTTACTTTATA
325 ACACCGAGACTCTTATGGAATTATGTCAA-GATTATCCTATGCTAATTTTTAGCTTTACTTTATA
* * * *
45407233 GAAAAATGATTAGGTTAAGGACCTCAAAGCAAGCAACAATAAGCTATTTGACATGAAGTTGGATA
389 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATA
* * *
45407298 TCAAGGTCAAATACCTTCAGTGATCCCCTTGCAATCATTGAAAAAAA-A-GGAGTAGTGAAGTGA
454 TCATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGA
* * * *
45407361 ACTATGATGTTTTTTGGTATAATAATAAACACAAACTTTGGGTTTCAATTCTCATTAATTTAGTA
519 ACTATGATGTTTTTTGG-ACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTA
*
45407426 TGGTGTTTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTG
583 TGGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTG
* * *
45407491 TTTTGAATCATATGTTATTGTCTTTTTTGTGTTAATACATTAATTAATGGTTAAATTATTTTGAG
648 TTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTTGAG
* * *
45407556 ATGAGTTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAAGGGAGAATTTGTGACTGTG
713 ATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTG
* *
45407618 ATGA-TATATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAAGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
*
45407682 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTTTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
* * * *
45407747 TATTTCATTACTTTACTTGTCTATTTTTAGAGTTTGAAACTTGTAGAA-AAAAGCATTGGACTCT
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTAT
* * * * *
45407811 TTGTTTTGGAGACATTTAGACGAA-TTAAAGCTCAAAACAAGAATACCAATTGAGTTAAACTTGA
196 TTGTTTTGGAGATATTTAGAC-AAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
* * *
45407875 AGACTTGAAGATCGATTACTCGCAGATCAAATAAAGTCATTTTCCATATTTGAAAGCATTGGATT
260 AGACTTGAAGATCGATTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATT
* * *
45407940 ACACCGAGACTCTTATGGAATTATGCCTAGATTATTCTATGCTAATTTTTAGCTTTACTTTATAG
325 ACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATAG
* *
45408005 AAAAATGATTAGATTAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAACTTGGATAT
390 AAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATAT
* * *
45408070 CAAGGTCAAATAGCTTTAGTGATCCCATTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGAA
455 CATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGAA
45408135 CTATGATGTGTTTTTGGTACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTA
520 CTATGATGT-TTTTTGG-ACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTA
* *
45408200 TGGTGTTTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTTCTTG
583 TGGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTG
* * *
45408265 TTTTGAATCATATGTTATTGTCTTTTTTGTGTTAATACATTCATTAACGGTTAAACTACTTTGAG
648 TTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTTGAG
* * * * * *
45408330 ATGAGGTACTTGAGATTCATTGAATAATGAGGAGAT-CTTAAAGGGGAGAATTTGTGACTGTG
713 ATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTT-AAGGGGAGAATTTGTAACTGTG
* *
45408392 ATGATTTTATTTTTCCTTATATATATTTATTCAAATATTGCTAAAGGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* * *
45408457 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGTTGGAACAGTGGCCACAACTTGTGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
* *
45408522 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTAGACAAT
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTAT
* * *
45408587 TTGTTTTGGAGATATTTAGAAAAGTTAGAGCCCAAAACAAGAAGACCATTTGAGTTAAAGTTAAA
196 TTGTTTTGGAGATATTTAGACAAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGAA
* *
45408652 GACTTGAAGATCGATTACTCGCAGATCAAATAAAGTCACTTTCCATATTTGTAGGCATTGGATTA
261 GACTTGAAGATCGATTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATTA
* * * * *
45408717 CACCGAGACTCTTATGGAATTAAGCCACGATTATTCTATGCTAATTTTTTGCTTTACTTTATAGA
326 CACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATAGA
* * ** * *
45408782 AAAATAATTAGGTTGAGGACCTCAAAGCAAGCAACAATAAGCTATTTGACATGAAGTTGGATATC
391 AAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATATC
* * * *
45408847 AAGGTTAAATAGCTTCAGTGATCCCTTTGTAATTATTGAAAAAAAGAGGGAGTAGTGAAGTGAAC
456 ATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGAAC
* *
45408912 TAGGATGTTTTATTGGTACAATAATAAACACAAACTTAGGGTTTCAATTCTCATTAATCTAGTAT
521 TATGATGTTTT-TTGG-ACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTAT
* * *
45408977 GGTGTTTCTTTTGCTTTCTGTACAAATGCTCACTCAATCTAGTAATTTTGTACACCTTTCCTTGT
584 GGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGT
* * * * *
45409042 TTTGAATTATATGTTATTGTTTTTTTTTTGTGTTAATACATTAATTAATGGTTAAATTATTTTGA
649 TTTGAATCATATATTATTG--TCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTTGA
* * * *
45409107 GATGAGTTAGTTGAGATTCTTTGATTAAAGGGGAGATCCTTAAAGGGAGAATTTTTAACTGTG
712 GATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTG
*
45409170 ATGA-TTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGTGATTGTTAACATA-
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
** * * * * * *
45409233 -T---GG--TTG----TTTTTATGGTTGTTTTTATGGTTGGAACAGTGGCCACAACTTGTGGCTC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
* * * *
45409288 TATTTCATTGCTTTACTTGTTTATTTTTAGAGATT-GAAAATTGTAGAACAAAAGCACTAGACTC
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAG-TTGGAAAATTGTAGAACAAAAGCATTGGACTA
* * * *
45409352 TTTGTTTTGGAGACATTTAGACGAA-TTAAAGCTCAAAACAAGAATACCAATTGAGTTAAAGTTG
195 TTTGTTTTGGAGATATTTAGAC-AAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTG
* ** *
45409416 AATACTTGAAGATCGATTACTTACAGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
259 AAGACTTGAAGATCGATTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
* * * *
45409481 TACACCGAGAATCTTATGAAATTATGCCAAGATTATTCTATGCTAATTTTTAGCTTTACTTTATA
324 TACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATA
* *
45409546 GAAAAATGATTAGATTAAGGACCTCAAAGCATGCAATAATAAGCTATTTGCCATGAAGTTGGATA
389 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATA
* * *
45409611 TCAAGGTCAAATAGCTTCACTGATCCCTTTGCAATCATTGGAAAAAA-AGGGAGTAGTGAAGTGA
454 TCATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGA
*
45409675 ACTAGGATGTTTCTTTGGTACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGT
519 ACTATGATGTTT-TTTGG-ACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGT
* * * * *
45409740 ATGATGCTTCTTTTGCTTTCTGTACAAATGCTCACTCAATCTCGTAATTTTGTACTCCTTTTCTT
582 ATGGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTT
* * *
45409805 GTTTTGAATCATATGTTGTTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTAATTTGA
647 GTTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTTGA
* * * * *
45409870 GATGAGGTAGTTGAGATTCATTGATTGAGGGGGAGATCTTTAAGGGAAGAATTTGTGACTGTG
712 GATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTG
** *
45409933 ATGATTTTATTTTTTCATATATATATATTTATTCAAATATTGCTAAAGGGGGAGATTGTTAACAT
1 ATGATTTTA-TTTTTC-CCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACAT
* * *
45409998 ATTTGAAGGCCAGAAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTCGTGGC
64 ATTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGC
* * * *
45410063 TCTGTTTCATTTCTTTACTTGTGTATTTTTAGAGTTGGAAAATTGTAGAATAAAAGCATTGGACT
129 TCTATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACT
* * * *
45410128 ATTT-TTTCGGAGATATTTACACGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTAAA-TCT
194 ATTTGTTTTGGAGATATTTAGACAAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGT-T
* * * * *
45410191 GAAGACTTGAAGATCGGTTACTCGCTGATCAAATAAAATCACTTTCCATTTTTGTAA-ACATTGG
258 GAAGACTTGAAGATCGATTACTCGCGGATCAAATAAAGTCACTTTCCATATTTG-AAGGCATTGG
* * * * * *
45410255 CTTTCACCGAGATTCTTATGAAATTATGTTAAGATTATCCTATGCTGATTTTTAGCTTTACTTTA
322 ATTACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTA
* * * * * *
45410320 TA-AAAAATAATTAGATCAAGGTCTTCAAAGCATGGAACAATAAGCTGTTGGCCATGAAGTTGGA
387 TAGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGA
* * * * *
45410384 TATCATGGTCAAATAGCCTCAGTAATCCCTTTCCAATCACTGAAAGAAAAGAGGGAGTATTGAAG
452 TATCATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAA-AAAAGAGGGAGTAGTGAAG
* * *
45410449 TGAACTATGA-------T-G-C--------ACA-AAA-TTAGGGTTTAAATTCTCATCAGTCTTG
516 TGAACTATGATGTTTTTTGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAG
* * *
45410495 TATGGTGATTCTTCTGCTCTT-TGCACAAATGCTCACTCAATCTAGTAATTTTGTACACTTTTCC
581 TATGGTGATTCTTTTGCT-TTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCC
** * * *
45410559 TTGTTTTGAATCATATATCGTTGTCTTTTTTGTGTTCATACACTCAATAATGGTTAAATTACTTT
645 TTGTTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTT
* * * *
45410624 GAGATGAGGTAGTTGAGATTCATTGATTAAGGGGGAAATCCTTAAGGGGAGAATTTTTAATTGTG
710 GAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTG
* * * ** * *
45410689 ATGATTTTATTTTTACCTATATATATTTATTCAAATATTTCTAAATAGAGAGATTGTTAACGTAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* * * * *
45410754 TTGAAGGTAAGGAAAAATTCTATGGTTGTTTCTATAGCTAAAAAAGTGGCCACAACTTGTGGCAC
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
* *
45410819 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTTTAGAACGAAAGCAATTGG-CTA
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGC-ATTGGACTA
* * *
45410883 TTTGTTTTGGAGATATTTAGACTAGTTAGAGCCCAAAACAAGAAGATCGATTGAGTTAAAGTTGA
195 TTTGTTTTGGAGATATTTAGACAAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
* * * * * *
45410948 TGATTTTAAGATC-AGTTACTCAC-GAGTCAAATAAAGTCACTTTCCATATTTGAAGGTAGTGGA
260 AGACTTGAAGATCGA-TTACTCGCGGA-TCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGA
* * * * *
45411011 TTACACCGAGACTTTTATGGATTTATTTGAAGATTATCCTATGCTGATTTTTAGCTTTACTTTAT
323 TTACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTAT
*
45411076 AGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTGGCCATGAAGTTGGAT
388 AGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGAT
* * * * * * *
45411141 ATCATGGTCAAATAGCTTTAGTGATCCCTTTCCGATCATTGAAAAGAAAAAAGGAGTAGAGGAGT
453 ATCATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAA-AAAGAGGGAGTAGTGAAGT
* * * * *
45411206 GAAGTATGACGTTTTTTTTGGACAATAATAAACACAAACTTAGGGTCTGAATTCTCATCAGTCTA
517 GAACTATGA--TGTTTTTTGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTA
* *
45411271 GTATGGTGATTCTTCTT-CTCTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTATTCCTTTC
580 GTATGGTGATTCTT-TTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTC
* *
45411335 CTTGTTTTGAATCATATATGT-TTGTCTTTTTTGTTTTAATACATTCAATAATGGTTAAATTACT
644 CTTGTTTTGAATCATATAT-TATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACT
* * * * * *
45411399 TTGAGGTGAGGTAGTTGAGATTCTTTGATTAAGTGGGAGATCTTTAAGGGAAGAATTTGTAATTT
708 TTGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTG
45411464 TG
773 TG
* * * *
45411466 ATGATTTTATTTTTACCTATATATATTTATTCAAATATTGCTAAAAGGGGAGATTATTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
** * *
45411531 TTGAAGTTAAGGAAAAATTCTATGGTTGTTT-TGATGGCTGAAAAAGTGGCCACAACTTGTAGCT
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCT-ATGGCTGAAATAGTGGCCACAACTTGTGGCT
* * * *
45411595 CTGTTTCATTGCTTTACTTGTCTCTTTTTAGAGTTGGAAAATTTTATAACAAAAGCATTGGACTA
130 CTATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTA
** * *
45411660 TTTGTTTTGGAG--ATTTAGATGAGTTAGAGCCCAAAACATGAAGACCAATTGAGTTGAAGTTGA
195 TTTGTTTTGGAGATATTTAGACAAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
* * * *
45411723 AGACTTGAAGATC-AGTTACTCGTGGATCAAATAAAGTCACTTTCTATTTTTGTAA-GCATTGGG
260 AGACTTGAAGATCGA-TTACTCGCGGATCAAATAAAGTCACTTTCCATATTTG-AAGGCATTGGA
* * *
45411786 TTACACCGAGACTCATATGG-ATATATGTGAAGATTATCCTATGCTGATTTTTAGCTTTACTTTA
323 TTACACCGAGACTCTTATGGAAT-TATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTA
* * * *
45411850 TAGAAAAATGATTAGATCAAGGACCTTAAAGCATGTATCAATATGCTATTAT-CCATGAAGTTGG
387 TAGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATT-TGCCATGAAGTTGG
*
45411914 ATATCATGGTCAAATAGCTTCAGTGATCCCTTT-CTAATCATTGAAAAAAAAGAGGGAGTAGTAA
451 ATATCATGGTCAAATAGCTTCAGTGATCCCTTTGC-AATCATTG-AAAAAAAGAGGGAGTAGTGA
* * * *
45411978 AGTGAAGTATGATGTTTTTTTTCGGACAATAATAAACACAAACTTAGGGTTTGAATTATCATCAG
514 AGTGAACTATGATG--TTTTTT-GGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAA
* * * * *
45412043 TCTAGTATGGTGATTCTTCTACTCTT-TACACAATTGCTCACTTAATCTAGTAATTTTGTACTCC
576 TCTAGTATGGTGATTCTTTTGCT-TTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCC
* * * * **
45412107 TTTCCTTGTTTTGATTGATATACTATTGTCTTTTTTGTGTTAATACATTCAATAATTTTTAAATT
640 TTTCCTTGTTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATT
* * * * *
45412172 ACTTTGAGATAAGTTATTTCAGATTCTTTGATTAAGGGGGAGATCCTTAAGAGGAGAATTTGTAA
705 ACTTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAA
* *
45412237 TTTTG
770 CTGTG
* *
45412242 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTTCTAAA-GGGGAAATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
*
45412306 TTGAAGGCAA-GAAGAAATTCTATGGTTGTTTCTATGGCTGAAAAAGTGGCCACAACTTGTGGCT
66 TTGAAGGCAAGGAA-AAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCT
* * * **
45412370 CTGTTTCATTGCTTTACTTGTCTATTTTTAGAGCTGGAAAATTGTAGAAAAAAAGTGTTGGACTA
130 CTATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTA
* * ** * * *
45412435 TTTTTTTTTGGAGATATTTAAATGAGTTAGAGCCCAAAACATGAAGACTAATTAAGTTAAAGTTG
195 -TTTGTTTTGGAGATATTTAGACAAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTG
** * * *
45412500 AAGACTTGACTATCGGTTACTCACGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTAGAT
259 AAGACTTGAAGATCGATTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
* * *
45412565 TACACCGAGAATCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTGCTTTATT
324 TACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATA
*
45412630 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATTAAGTTGGATA
389 GAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATA
* * * * * *
45412695 TCATGGTCAACTAGCTTCAATGATCCCTTTGCAATCATTGAGAAAGAAGAGGAAGTAATGAATTG
454 TCATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGA-AAAAAAGAGGGAGTAGTGAAGTG
*
45412760 AAGTATGATGTTTTTTTTGGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCAT-AAGTCT
518 AACTATGATG--TTTTTT-GGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAA-TCT
* * * * * *
45412824 ATTATGGTGATTCTTTTTCTTTTTGTACAAATACTCACTCAATTTAGTAATTTTGTACTCCTTTC
579 AGTATGGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTC
* *
45412889 CTTGTTTTGAATCATATATTATTGTCTTTATTGTGTTAATACATTCATTAATGGTTAAATTAGTT
644 CTTGTTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTT
* *
45412954 TGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGATATCCTTAAGGGGAGAATTTGCAACTGT
709 TGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGT
45413019 G
774 G
* * *
45413020 ATTATTTTATTTTTCCCTCTATATATTTATTCAAAAATTACTAAAGGGGGAGATTGTTAACATAT
1 ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
* ** *
45413085 TTGGAGGCAAGGAAAAATTCTAT-G--G------T---TGAAATAGTGGCCACAACTTAAGGCTT
66 TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
* * * *
45413138 TGTTTCATTGCTTTACTAGTCTATTTTTAGAGTTGGAAAATTTTAGAACGAAAGCAATTGG-CTA
131 TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGC-ATTGGACTA
* * *
45413202 TTTGTTTTGGAGATATTTAGACTAGTTAGAGCCCAAAACAAGAAGATCGATTGAGTTAAAGTTGA
195 TTTGTTTTGGAGATATTTAGACAAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGA
* * * * *
45413267 TGATTTTAAGATC-AGTTACTCGC-GAGTCAAATAAAGTCACTTTCCATATTTGAAGGTAGTGGA
260 AGACTTGAAGATCGA-TTACTCGCGGA-TCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGA
* * *
45413330 TTACATCGAGACTCTTATGGAATTATGTAAAGATTATCCTATGCTGATTTTTAGCTTTACTTTAT
323 TTACACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTAT
* ** * * *
45413395 AGAAAAGTGATTAGATCAAGGATATCAAAGCATGCAACAATAAGTTATTGGCCATGAAGTTGTAT
388 AGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGAT
* * *
45413460 ATCATGGTCAAATAGCTTCAATGATCCCTTTGCAATCATTGAACAAAAAAGAGAGAGTAGTGCAG
453 ATCATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTG-A-AAAAAAGAGGGAGTAGTGAAG
* * *
45413525 TGAAGTATGATGTTCTTTTTTGGACAATAATAAACACAAACTTAGGGTTTAAATTCTCATCAGTC
516 TGAACTATGATG---TTTTTTGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATC
* * * *
45413590 TAGTGTGGTGATTCTTCTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTTTACTCATTT
578 TAGTATGGTGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTT
* * * *
45413655 CCTTATTTTGAATAATATATTGTTGTCTTTTTTGTGTTAATACATTTATTAATGGTTAAATTACT
643 CCTTGTTTTGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACT
*
45413720 TTGAGATGAGGTAGTTGAAATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTG
708 TTGAGATGAGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTG
45413785 TG
773 TG
* * * *
45413787 ATGATTTTATAGTTTCTCTATAGATATTTTTTCAAAAATTGCTAAAGGGGGAGATTGTTAACATA
1 ATGATTTTAT-TTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATA
*
45413852 TTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGAGGCT
65 TTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCT
* * * *
45413917 C-AGTTTCA-----TTACTAGTCTATTTTTAGAGTTGAAAAATTTTAGAACAAAAGCATTGAACT
130 CTA-TTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACT
* * * * *
45413976 ATTTGTTTTAGATATATTTAGACGAGTTAGAGCCCAAAACATGAAGACCAATTGAGCTAAAGTTG
194 ATTTGTTTTGGAGATATTTAGACAAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTG
* * * * * *
45414041 AAGACTTGAAGATCGGTTATTTGTGGATGAAATAAAGTCCCTTTCCATATTTGAAGGCATTGGAT
259 AAGACTTGAAGATCGATTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGAT
* * * *
45414106 TACACC-AGGACTCTTATGGAATTATGTCAATATTATGCTATACTGATTTTTAGCTTTACTTTAT
324 TACACCGA-GACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTAT
*
45414170 AG-AAAATTATTAGA
388 AGAAAAATGATTAGA
45414184 CTATGACTCT
Statistics
Matches: 5842, Mismatches: 596, Indels: 248
0.87 0.09 0.04
Matches are distributed among these distances:
754 159 0.03
755 168 0.03
756 323 0.06
757 5 0.00
758 3 0.00
763 99 0.02
764 4 0.00
765 167 0.03
766 980 0.17
767 358 0.06
768 86 0.01
769 2 0.00
770 2 0.00
771 147 0.03
772 5 0.00
773 29 0.00
774 251 0.04
775 883 0.15
776 901 0.15
777 567 0.10
778 628 0.11
779 42 0.01
780 33 0.01
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (774 bp):
ATGATTTTATTTTTCCCTATATATATTTATTCAAAAATTGCTAAAGGGGGAGATTGTTAACATAT
TTGAAGGCAAGGAAAAATTCTATGGTTGTTTCTATGGCTGAAATAGTGGCCACAACTTGTGGCTC
TATTTCATTGCTTTACTTGTCTATTTTTAGAGTTGGAAAATTGTAGAACAAAAGCATTGGACTAT
TTGTTTTGGAGATATTTAGACAAGTTAGAGCCCAAAACAAGAAGACCAATTGAGTTAAAGTTGAA
GACTTGAAGATCGATTACTCGCGGATCAAATAAAGTCACTTTCCATATTTGAAGGCATTGGATTA
CACCGAGACTCTTATGGAATTATGTCAAGATTATCCTATGCTAATTTTTAGCTTTACTTTATAGA
AAAATGATTAGATCAAGGACCTCAAAGCATGCAACAATAAGCTATTTGCCATGAAGTTGGATATC
ATGGTCAAATAGCTTCAGTGATCCCTTTGCAATCATTGAAAAAAAGAGGGAGTAGTGAAGTGAAC
TATGATGTTTTTTGGACAATAATAAACACAAACTTAGGGTTTCAATTCTCATCAATCTAGTATGG
TGATTCTTTTGCTTTCTGCACAAATGCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGTTT
TGAATCATATATTATTGTCTTTTTTGTGTTAATACATTCATTAATGGTTAAATTACTTTGAGATG
AGGTAGTTGAGATTCTTTGATTAAGGGGGAGATCCTTAAGGGGAGAATTTGTAACTGTG
Found at i:45409248 original size:12 final size:12
Alignment explanation
Indices: 45409231--45409262 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
45409221 ATTGTTAACA
45409231 TATGGTTGTTTT
1 TATGGTTGTTTT
45409243 TATGGTTGTTTT
1 TATGGTTGTTTT
45409255 TATGGTTG
1 TATGGTTG
45409263 GAACAGTGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.00, G:0.28, T:0.62
Consensus pattern (12 bp):
TATGGTTGTTTT
Found at i:45412290 original size:775 final size:775
Alignment explanation
Indices: 45410461--45414183 Score: 5099
Period size: 775 Copynumber: 4.8 Consensus size: 775
45410451 AACTATGATG
* *
45410461 CACAAAATTAGGGTTTAAATTCTCATCAGTCTTGTATGGTGATTCTTCTGCTCTTTGCACAAATG
1 CACAAACTTAGGGTTTAAATTCTCATCAGTCTAGTATGGTGATTCTTCTGCTCTTTGCACAAATG
* * *
45410526 CTCACTCAATCTAGTAATTTTGTACACTTTTCCTTGTTTTGAATCATATATCGTTGTCTTTTTTG
66 CTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGTTTTGAATCATATAT-ATTGTCTTTTTTG
* * *
45410591 TGTTCATACACTCAATAATGGTTAAATTACTTTGAGATGAGGTAGTTGAGATTCATTGATTAAGG
130 TGTTAATACATTCAATAATGGTTAAATTACTTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGG
* * *
45410656 GGGAAATCCTTAAGGGGAGAATTTTTAATTGTGATGATTTTATTTTTACCTATATATATTTATTC
195 GGGAGATCCTTAAGGGGAGAATTTGTAATTGTGATGATTTTATTTTTCCCTATATATATTTATTC
* * ** * * *
45410721 AAATATTTCTAAATAGAGAGATTGTTAACGTATTTGAAGGTAAGGAAAAATTCTATGGTTGTTTC
260 AAAAATTGCTAAAGGGGGAGATTGTTAACATATTTGAAGGCAAGGAAAAATTCTATGGTTGTTTC
* * * * *
45410786 TATAGCTAAAAAAGTGGCCACAACTTGTGGCACTATTTCATTGCTTTACTTGTCTATTTTTAGAG
325 TATGGCTGAAAAAGTGGCCACAACTTGTAGCTCTGTTTCATTGCTTTACTTGTCTATTTTTAGAG
*
45410851 TTGGAAAATTTTAGAACGAAAGCAATTGG-CTATTTGTTTTGGAGATATTTAGACT-AGTTAGAG
390 TTGGAAAATTTTAGAACAAAAGC-ATTGGACTATTTGTTTTGGAGA-ATTTAGA-TGAGTTAGAG
* * * * * * **
45410914 CCCAAAACAAGAAGATCGATTGAGTTAAAGTTGATGATTTTAAGATCAGTTACTC-ACGAGTCAA
452 CCCAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGATCAGTTACTCGTGGA-TCAA
* * * * * *
45410978 ATAAAGTCACTTTCCATATTTGAAGGTAGTGGATTACACCGAGACTTTTATGGATTTATTTGAAG
516 ATAAAGTCACTTTCCATATTTGAAGGCATTGGATTACACCGAGACTCTTATGGAATTATGTCAAG
45411043 ATTATCCTATGCTGATTTTTAGCTTTACTTTATAGAAAAATGATTAGATCAAGGACCTCAAAGCA
581 ATTATCCTATGCTGATTTTTAGCTTTACTTTATAGAAAAATGATTAGATCAAGGACCTCAAAGCA
* * *
45411108 TGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATAGCTTTAGTGATCCCTTTC
646 TGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATAGCTTCAATGATCCCTTTG
* * * *
45411173 CGATCATTGAAAAGAAAA-AAGGAGTAG-AGGAGTGAAGTATGACGTTTTTTTTGGACAATAATA
711 CAATCATTGAAAA-AAAAGAGGGAGTAGTA-AAGTGAAGTATGATGTTTTTTTTGGACAATAATA
45411236 AA
774 AA
* * * *
45411238 CACAAACTTAGGGTCTGAATTCTCATCAGTCTAGTATGGTGATTCTTCTTCTCTCTGCACAAATG
1 CACAAACTTAGGGTTTAAATTCTCATCAGTCTAGTATGGTGATTCTTCTGCTCTTTGCACAAATG
* *
45411303 CTCACTCAATCTAGTAATTTTGTATTCCTTTCCTTGTTTTGAATCATATATGTTTGTCTTTTTTG
66 CTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGTTTTGAATCATATAT-ATTGTCTTTTTTG
* * *
45411368 TTTTAATACATTCAATAATGGTTAAATTACTTTGAGGTGAGGTAGTTGAGATTCTTTGATTAAGT
130 TGTTAATACATTCAATAATGGTTAAATTACTTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGG
* * * *
45411433 GGGAGATCTTTAAGGGAAGAATTTGTAATTTTGATGATTTTATTTTTACCTATATATATTTATTC
195 GGGAGATCCTTAAGGGGAGAATTTGTAATTGTGATGATTTTATTTTTCCCTATATATATTTATTC
* * * **
45411498 AAATATTGCTAAAAGGGGAGATTATTAACATATTTGAAGTTAAGGAAAAATTCTATGGTTGTTT-
260 AAAAATTGCTAAAGGGGGAGATTGTTAACATATTTGAAGGCAAGGAAAAATTCTATGGTTGTTTC
*
45411562 TGATGGCTGAAAAAGTGGCCACAACTTGTAGCTCTGTTTCATTGCTTTACTTGTCTCTTTTTAGA
325 T-ATGGCTGAAAAAGTGGCCACAACTTGTAGCTCTGTTTCATTGCTTTACTTGTCTATTTTTAGA
*
45411627 GTTGGAAAATTTTATAACAAAAGCATTGGACTATTTGTTTTGGAG-ATTTAGATGAGTTAGAGCC
389 GTTGGAAAATTTTAGAACAAAAGCATTGGACTATTTGTTTTGGAGAATTTAGATGAGTTAGAGCC
*
45411691 CAAAACATGAAGACCAATTGAGTTGAAGTTGAAGACTTGAAGATCAGTTACTCGTGGATCAAATA
454 CAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGATCAGTTACTCGTGGATCAAATA
* * * * *
45411756 AAGTCACTTTCTATTTTTGTAA-GCATTGGGTTACACCGAGACTCATATGG-ATATATGTGAAGA
519 AAGTCACTTTCCATATTTG-AAGGCATTGGATTACACCGAGACTCTTATGGAAT-TATGTCAAGA
*
45411819 TTATCCTATGCTGATTTTTAGCTTTACTTTATAGAAAAATGATTAGATCAAGGACCTTAAAGCAT
582 TTATCCTATGCTGATTTTTAGCTTTACTTTATAGAAAAATGATTAGATCAAGGACCTCAAAGCAT
* * * ** *
45411884 GTATCAATATGCTATTATCCATGAAGTTGGATATCATGGTCAAATAGCTTCAGTGATCCCTTT-C
647 GCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATAGCTTCAATGATCCCTTTGC
45411948 TAATCATTGAAAAAAAAGAGGGAGTAGTAAAGTGAAGTATGATGTTTTTTTTCGGACAATAATAA
712 -AATCATTGAAAAAAAAGAGGGAGTAGTAAAGTGAAGTATGATGTTTTTTTT-GGACAATAATAA
45412013 A
775 A
* * * * *
45412014 CACAAACTTAGGGTTTGAATTATCATCAGTCTAGTATGGTGATTCTTCTACTCTTTACACAATTG
1 CACAAACTTAGGGTTTAAATTCTCATCAGTCTAGTATGGTGATTCTTCTGCTCTTTGCACAAATG
* * *
45412079 CTCACTTAATCTAGTAATTTTGTACTCCTTTCCTTGTTTTGATTGATATACTATTGTCTTTTTTG
66 CTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGTTTTGAATCATATA-TATTGTCTTTTTTG
** * * * *
45412144 TGTTAATACATTCAATAATTTTTAAATTACTTTGAGATAAGTTATTTCAGATTCTTTGATTAAGG
130 TGTTAATACATTCAATAATGGTTAAATTACTTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGG
* *
45412209 GGGAGATCCTTAAGAGGAGAATTTGTAATTTTGATGATTTTATTTTTCCCTATATATATTTATTC
195 GGGAGATCCTTAAGGGGAGAATTTGTAATTGTGATGATTTTATTTTTCCCTATATATATTTATTC
* *
45412274 AAAAATTTCTAAA-GGGGAAATTGTTAACATATTTGAAGGCAA-GAAGAAATTCTATGGTTGTTT
260 AAAAATTGCTAAAGGGGGAGATTGTTAACATATTTGAAGGCAAGGAA-AAATTCTATGGTTGTTT
*
45412337 CTATGGCTGAAAAAGTGGCCACAACTTGTGGCTCTGTTTCATTGCTTTACTTGTCTATTTTTAGA
324 CTATGGCTGAAAAAGTGGCCACAACTTGTAGCTCTGTTTCATTGCTTTACTTGTCTATTTTTAGA
* * * ** * *
45412402 GCTGGAAAATTGTAGAAAAAAAGTGTTGGACTATTTTTTTTTGGAGATATTTAAATGAGTTAGAG
389 GTTGGAAAATTTTAGAACAAAAGCATTGGACTA-TTTGTTTTGGAGA-ATTTAGATGAGTTAGAG
* * ** * **
45412467 CCCAAAACATGAAGACTAATTAAGTTAAAGTTGAAGACTTGACTATCGGTTACTCACGGATCAAA
452 CCCAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGATCAGTTACTCGTGGATCAAA
* *
45412532 TAAAGTCACTTTCCATATTTGAAGGCATTAGATTACACCGAGAATCTTATGGAATTATGTCAAGA
517 TAAAGTCACTTTCCATATTTGAAGGCATTGGATTACACCGAGACTCTTATGGAATTATGTCAAGA
* * *
45412597 TTATCCTATGCTAATTTTTAGCTTTGCTTTATTGAAAAATGATTAGATCAAGGACCTCAAAGCAT
582 TTATCCTATGCTGATTTTTAGCTTTACTTTATAGAAAAATGATTAGATCAAGGACCTCAAAGCAT
* * *
45412662 GCAACAATAAGCTATTTGCCATTAAGTTGGATATCATGGTCAACTAGCTTCAATGATCCCTTTGC
647 GCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATAGCTTCAATGATCCCTTTGC
* * * * * *
45412727 AATCATTGAGAAAGAAGAGGAAGTAATGAATTGAAGTATGATGTTTTTTTTGGGACAATAATAAA
712 AATCATTGAAAAAAAAGAGGGAGTAGTAAAGTGAAGTATGATGTTTTTTTT-GGACAATAATAAA
* * * * * * * *
45412792 CACAAACTTAGGGTTTCAATTCTCATAAGTCTATTATGGTGATTCTTTTTCTTTTTGTACAAATA
1 CACAAACTTAGGGTTTAAATTCTCATCAGTCTAGTATGGTGATTCTTCTGCTCTTTGCACAAATG
* *
45412857 CTCACTCAATTTAGTAATTTTGTACTCCTTTCCTTGTTTTGAATCATATATTATTGTCTTTATTG
66 CTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGTTTTGAATCATATA-TATTGTCTTTTTTG
* *
45412922 TGTTAATACATTCATTAATGGTTAAATTAGTTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGG
130 TGTTAATACATTCAATAATGGTTAAATTACTTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGG
* * * * *
45412987 GGGATATCCTTAAGGGGAGAATTTGCAACTGTGATTATTTTATTTTTCCCTCTATATATTTATTC
195 GGGAGATCCTTAAGGGGAGAATTTGTAATTGTGATGATTTTATTTTTCCCTATATATATTTATTC
* *
45413052 AAAAATTACTAAAGGGGGAGATTGTTAACATATTTGGAGGCAAGGAAAAATTCTAT-G--G----
260 AAAAATTGCTAAAGGGGGAGATTGTTAACATATTTGAAGGCAAGGAAAAATTCTATGGTTGTTTC
* * * *
45413110 --T---TGAAATAGTGGCCACAACTT-AAGGCTTTGTTTCATTGCTTTACTAGTCTATTTTTAGA
325 TATGGCTGAAAAAGTGGCCACAACTTGTA-GCTCTGTTTCATTGCTTTACTTGTCTATTTTTAGA
*
45413169 GTTGGAAAATTTTAGAACGAAAGCAATTGG-CTATTTGTTTTGGAGATATTTAGACT-AGTTAGA
389 GTTGGAAAATTTTAGAACAAAAGC-ATTGGACTATTTGTTTTGGAGA-ATTTAGA-TGAGTTAGA
* * * * * * *
45413232 GCCCAAAACAAGAAGATCGATTGAGTTAAAGTTGATGATTTTAAGATCAGTTACTCG-CGAGTCA
451 GCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGATCAGTTACTCGTGGA-TCA
* * * *
45413296 AATAAAGTCACTTTCCATATTTGAAGGTAGTGGATTACATCGAGACTCTTATGGAATTATGTAAA
515 AATAAAGTCACTTTCCATATTTGAAGGCATTGGATTACACCGAGACTCTTATGGAATTATGTCAA
* **
45413361 GATTATCCTATGCTGATTTTTAGCTTTACTTTATAGAAAAGTGATTAGATCAAGGATATCAAAGC
580 GATTATCCTATGCTGATTTTTAGCTTTACTTTATAGAAAAATGATTAGATCAAGGACCTCAAAGC
* *
45413426 ATGCAACAATAAGTTATTGGCCATGAAGTTGTATATCATGGTCAAATAGCTTCAATGATCCCTTT
645 ATGCAACAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATAGCTTCAATGATCCCTTT
* **
45413491 GCAATCATTGAACAAAAAAGAGAGAGTAGTGCAGTGAAGTATGATGTTCTTTTTTGGACAATAAT
710 GCAATCATTGAA-AAAAAAGAGGGAGTAGTAAAGTGAAGTATGATGTT-TTTTTTGGACAATAAT
45413556 AAA
773 AAA
*
45413559 CACAAACTTAGGGTTTAAATTCTCATCAGTCTAGTGTGGTGATTCTTCTGCT-TTCTGCACAAAT
1 CACAAACTTAGGGTTTAAATTCTCATCAGTCTAGTATGGTGATTCTTCTGCTCTT-TGCACAAAT
* * * * *
45413623 GCTCACTCAATCTAGTAATTTTTTACTCATTTCCTTATTTTGAATAATATATTGTTGTCTTTTTT
65 GCTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGTTTTGAATCATATA-TATTGTCTTTTTT
* * *
45413688 GTGTTAATACATTTATTAATGGTTAAATTACTTTGAGATGAGGTAGTTGAAATTCTTTGATTAAG
129 GTGTTAATACATTCAATAATGGTTAAATTACTTTGAGATGAGGTAGTTGAGATTCTTTGATTAAG
* * * * *
45413753 GGGGAGATCCTTAAGGGGAGAATTTGTAACTGTGATGATTTTATAGTTTCTCTATAGATATTTTT
194 GGGGAGATCCTTAAGGGGAGAATTTGTAATTGTGATGATTTTAT-TTTTCCCTATATATATTTAT
45413818 TCAAAAATTGCTAAAGGGGGAGATTGTTAACATATTTGAAGGCAAGGAAAAATTCTATGGTTGTT
258 TCAAAAATTGCTAAAGGGGGAGATTGTTAACATATTTGAAGGCAAGGAAAAATTCTATGGTTGTT
* * *
45413883 TCTATGGCTGAAATAGTGGCCACAACTTG-AGGCTCAGTTTCA-----TTACTAGTCTATTTTTA
323 TCTATGGCTGAAAAAGTGGCCACAACTTGTA-GCTCTGTTTCATTGCTTTACTTGTCTATTTTTA
* * * * *
45413942 GAGTTGAAAAATTTTAGAACAAAAGCATTGAACTATTTGTTTTAGATATATTTAGACGAGTTAGA
387 GAGTTGGAAAATTTTAGAACAAAAGCATTGGACTATTTGTTTTGGAGA-ATTTAGATGAGTTAGA
* * * * *
45414007 GCCCAAAACATGAAGACCAATTGAGCTAAAGTTGAAGACTTGAAGATCGGTTATTTGTGGATGAA
451 GCCCAAAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGATCAGTTACTCGTGGATCAA
*
45414072 ATAAAGTCCCTTTCCATATTTGAAGGCATTGGATTACACC-AGGACTCTTATGGAATTATGTCAA
516 ATAAAGTCACTTTCCATATTTGAAGGCATTGGATTACACCGA-GACTCTTATGGAATTATGTCAA
* * * *
45414136 TATTATGCTATACTGATTTTTAGCTTTACTTTATAG-AAAATTATTAGA
580 GATTATCCTATGCTGATTTTTAGCTTTACTTTATAGAAAAATGATTAGA
45414184 CTATGACTCT
Statistics
Matches: 2617, Mismatches: 283, Indels: 95
0.87 0.09 0.03
Matches are distributed among these distances:
765 2 0.00
766 265 0.10
767 331 0.13
768 81 0.03
769 1 0.00
770 1 0.00
771 1 0.00
774 25 0.01
775 620 0.24
776 284 0.11
777 393 0.15
778 540 0.21
779 39 0.01
780 34 0.01
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (775 bp):
CACAAACTTAGGGTTTAAATTCTCATCAGTCTAGTATGGTGATTCTTCTGCTCTTTGCACAAATG
CTCACTCAATCTAGTAATTTTGTACTCCTTTCCTTGTTTTGAATCATATATATTGTCTTTTTTGT
GTTAATACATTCAATAATGGTTAAATTACTTTGAGATGAGGTAGTTGAGATTCTTTGATTAAGGG
GGAGATCCTTAAGGGGAGAATTTGTAATTGTGATGATTTTATTTTTCCCTATATATATTTATTCA
AAAATTGCTAAAGGGGGAGATTGTTAACATATTTGAAGGCAAGGAAAAATTCTATGGTTGTTTCT
ATGGCTGAAAAAGTGGCCACAACTTGTAGCTCTGTTTCATTGCTTTACTTGTCTATTTTTAGAGT
TGGAAAATTTTAGAACAAAAGCATTGGACTATTTGTTTTGGAGAATTTAGATGAGTTAGAGCCCA
AAACATGAAGACCAATTGAGTTAAAGTTGAAGACTTGAAGATCAGTTACTCGTGGATCAAATAAA
GTCACTTTCCATATTTGAAGGCATTGGATTACACCGAGACTCTTATGGAATTATGTCAAGATTAT
CCTATGCTGATTTTTAGCTTTACTTTATAGAAAAATGATTAGATCAAGGACCTCAAAGCATGCAA
CAATAAGCTATTGGCCATGAAGTTGGATATCATGGTCAAATAGCTTCAATGATCCCTTTGCAATC
ATTGAAAAAAAAGAGGGAGTAGTAAAGTGAAGTATGATGTTTTTTTTGGACAATAATAAA
Found at i:45415947 original size:16 final size:16
Alignment explanation
Indices: 45415923--45415955 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
45415913 TAATGAGTAC
45415923 AATAATATATAAAAAT
1 AATAATATATAAAAAT
*
45415939 AATACTATATAAAAAT
1 AATAATATATAAAAAT
45415955 A
1 A
45415956 CATATGCACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AATAATATATAAAAAT
Found at i:45416104 original size:23 final size:22
Alignment explanation
Indices: 45416064--45416119 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
45416054 CCATTTTTAC
45416064 ATAAAGATATACCTA-TATATATA
1 ATAAAGATATA--TACTATATATA
* *
45416087 TTAAAGATATATAC-ATATGTA
1 ATAAAGATATATACTATATATA
45416108 ATAAA-ATATATA
1 ATAAAGATATATA
45416120 AATAACATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 7 0.24
21 12 0.41
23 10 0.34
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (22 bp):
ATAAAGATATATACTATATATA
Found at i:45416190 original size:18 final size:19
Alignment explanation
Indices: 45416164--45416203 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
45416154 TATGATAAAA
*
45416164 ATAATAATATACATAATAT
1 ATAATAATACACATAATAT
*
45416183 ATAA-AATACATATAATAT
1 ATAATAATACACATAATAT
45416201 ATA
1 ATA
45416204 CATATACTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
ATAATAATACACATAATAT
Found at i:45416191 original size:16 final size:15
Alignment explanation
Indices: 45416163--45416233 Score: 51
Period size: 16 Copynumber: 4.7 Consensus size: 15
45416153 GTATGATAAA
*
45416163 AATAATAATATACAT
1 AATAATAAAATACAT
45416178 AATATATAAAATACAT
1 AATA-ATAAAATACAT
*
45416194 -ATAAT-ATATACAT
1 AATAATAAAATACAT
*
45416207 -ATACTAGAAATGACAAT
1 AATAATA-AAAT-AC-AT
45416224 AAT-ATAAAAT
1 AATAATAAAAT
45416234 GAACTTGCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
13 11 0.24
14 2 0.04
15 10 0.22
16 16 0.36
17 4 0.09
18 2 0.04
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAAAATACAT
Found at i:45416204 original size:13 final size:14
Alignment explanation
Indices: 45416164--45416209 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
45416154 TATGATAAAA
45416164 ATAATAATATACAT
1 ATAATAATATACAT
*
45416178 AATATATAAAATACAT
1 -ATA-ATAATATACAT
45416194 ATAAT-ATATACAT
1 ATAATAATATACAT
45416207 ATA
1 ATA
45416210 CTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 10 0.36
14 2 0.07
15 6 0.21
16 10 0.36
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATAATATACAT
Found at i:45416226 original size:28 final size:28
Alignment explanation
Indices: 45416163--45416229 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 28
45416153 GTATGATAAA
45416163 AATAATAATATACATAATATATAAAATAC
1 AATAAT-ATATACATAATATATAAAATAC
*
45416192 ATATAATATATACAT-ATACTA-GAAATGAC
1 A-ATAATATATACATAATA-TATAAAAT-AC
45416221 AATAATATA
1 AATAATATA
45416230 AAATGAACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
28 15 0.44
29 14 0.41
30 5 0.15
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.31
Consensus pattern (28 bp):
AATAATATATACATAATATATAAAATAC
Found at i:45416325 original size:17 final size:19
Alignment explanation
Indices: 45416303--45416346 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
45416293 AGAAATACTT
*
45416303 AATATATA-ATAAT-TTAA
1 AATATATACATAATATAAA
*
45416320 AATATATACATGATATAAA
1 AATATATACATAATATAAA
45416339 AATATATA
1 AATATATA
45416347 TAGAACGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 4 0.17
19 11 0.48
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
AATATATACATAATATAAA
Found at i:45416460 original size:9 final size:9
Alignment explanation
Indices: 45416438--45416503 Score: 50
Period size: 9 Copynumber: 7.7 Consensus size: 9
45416428 ACATACAATG
*
45416438 TATATAAAA
1 TATATATAA
*
45416447 AATATATAA
1 TATATATAA
45416456 TATATATACA
1 TATATATA-A
45416466 -ATATAT-A
1 TATATATAA
* *
45416473 CATATCTAA
1 TATATATAA
45416482 TATA-ATAA
1 TATATATAA
*
45416490 TAAATAT-A
1 TATATATAA
45416498 TATATA
1 TATATA
45416504 AAAAATATTG
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
7 1 0.02
8 17 0.38
9 26 0.58
10 1 0.02
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.38
Consensus pattern (9 bp):
TATATATAA
Found at i:45416462 original size:11 final size:11
Alignment explanation
Indices: 45416438--45416503 Score: 50
Period size: 11 Copynumber: 6.4 Consensus size: 11
45416428 ACATACAATG
* *
45416438 TATATAAAAAA
1 TATATAATATA
45416449 TATATAATATA
1 TATATAATATA
*
45416460 TATACAATATA
1 TATATAATATA
* *
45416471 TACAT-ATCTA
1 TATATAATATA
45416481 -ATATAATA-A
1 TATATAATATA
*
45416490 TAAAT-ATATA
1 TATATAATATA
45416500 TATA
1 TATA
45416504 AAAAATATTG
Statistics
Matches: 42, Mismatches: 10, Indels: 7
0.71 0.17 0.12
Matches are distributed among these distances:
9 7 0.17
10 13 0.31
11 22 0.52
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.38
Consensus pattern (11 bp):
TATATAATATA
Found at i:45416565 original size:35 final size:34
Alignment explanation
Indices: 45416483--45416625 Score: 102
Period size: 35 Copynumber: 4.2 Consensus size: 34
45416473 CATATCTAAT
**
45416483 ATAATA-ATAAATATATATATAAAAAATATTGATA
1 ATAATATATAAATATATATAT-AAAAATATACATA
** *
45416517 ATGCT-TCACAAATATATATACTAAAAATATACATA
1 ATAATAT-ATAAATATATATA-TAAAAATATACATA
*
45416552 ATAATATATAAATATAGTAT-TAAAAGTAT--AT-
1 ATAATATATAAATATA-TATATAAAAATATACATA
** *
45416583 ATAACGTATAAATATATATATACAAAAAATA-ATA
1 ATAATATATAAATATATATATA-AAAATATACATA
45416617 CATAATATA
1 -ATAATATA
45416626 GACACATTTG
Statistics
Matches: 84, Mismatches: 15, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
30 3 0.04
31 16 0.19
32 7 0.08
33 2 0.02
34 11 0.13
35 40 0.48
36 5 0.06
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (34 bp):
ATAATATATAAATATATATATAAAAATATACATA
Found at i:45416717 original size:3 final size:3
Alignment explanation
Indices: 45416709--45416748 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
45416699 ATGACAACAC
45416709 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
45416749 ATTAAAGTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:45417300 original size:14 final size:14
Alignment explanation
Indices: 45417278--45417319 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
45417268 TTTGAGTAGG
*
45417278 AAAAGGAAAGAAAA
1 AAAAAGAAAGAAAA
45417292 AAAAAGAAA-AGAAA
1 AAAAAGAAAGA-AAA
45417306 AAAAAGAAAGAAAA
1 AAAAAGAAAGAAAA
45417320 TCGATTGGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 1 0.04
14 23 0.92
15 1 0.04
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAGAAAA
Found at i:45418200 original size:44 final size:44
Alignment explanation
Indices: 45418152--45418251 Score: 137
Period size: 44 Copynumber: 2.3 Consensus size: 44
45418142 AAATTTGTGG
* * *
45418152 CTTTGATCTGCTTCACTATAACTTCAGAAAGACAAGACTTGCAA
1 CTTTGACCTGCTTCACTACAACTTCAGAAAGACAAAACTTGCAA
* * **
45418196 CTTTGACCTGCTTCATTGCAACTTCAGGGAGACAAAACTTGCAA
1 CTTTGACCTGCTTCACTACAACTTCAGAAAGACAAAACTTGCAA
45418240 CTTTGACCTGCT
1 CTTTGACCTGCT
45418252 CCGCTGCAAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (44 bp):
CTTTGACCTGCTTCACTACAACTTCAGAAAGACAAAACTTGCAA
Found at i:45418260 original size:44 final size:44
Alignment explanation
Indices: 45418152--45418263 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 44
45418142 AAATTTGTGG
* * ** *
45418152 CTTTGATCTGCTTCACTATAACTTCAGAAAGACAAGACTTGCAA
1 CTTTGACCTGCTCCACTGCAACTTCAGAAAGACAAAACTTGCAA
* * **
45418196 CTTTGACCTGCTTCATTGCAACTTCAGGGAGACAAAACTTGCAA
1 CTTTGACCTGCTCCACTGCAACTTCAGAAAGACAAAACTTGCAA
*
45418240 CTTTGACCTGCTCCGCTGCAACTT
1 CTTTGACCTGCTCCACTGCAACTT
45418264 TAGAGAGGCC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (44 bp):
CTTTGACCTGCTCCACTGCAACTTCAGAAAGACAAAACTTGCAA
Found at i:45418520 original size:80 final size:77
Alignment explanation
Indices: 45418424--45418703 Score: 233
Period size: 73 Copynumber: 3.7 Consensus size: 77
45418414 GCCAAAACTT
* **
45418424 AACTCACCTCTCGCAATATAAGTT-AGTTTTGAAACTT-AAAAATAGATTTTGAAAATACCTCGA
1 AACTCACCTCTCGCAATATAAGTTGACTTTT-----TTGAAAAATAGAAATTGAAAATACCTCGA
45418487 CATGTGACCCGCGGTTC
61 CATGTGACCCGCGGTTC
* * * *
45418504 AACTCACTTTTCGCAATATGAGTTGACTTTTTTGAAAAATATAAATTGAAAATACCTCGACATGT
1 AACTCACCTCTCGCAATATAAGTTGACTTTTTTGAAAAATAGAAATTGAAAATACCTCGACATGT
*
45418569 GACCCG-GGCTC
66 GACCCGCGGTTC
* * * * *
45418580 AAATCACCTCTGGCAATATGCA-TTGA--TTTTTGAAAAACATAAATTGAAAATACCTC-AGC--
1 AACTCACCTCTCGCAATAT-AAGTTGACTTTTTTGAAAAATAGAAATTGAAAATACCTCGA-CAT
* *
45418639 GTG-CCCTGAGGCTC
64 GTGACCC-GCGGTTC
* * *
45418653 AACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAGAAATTTGAAAA
1 AACTCACCTCTCGCAATATAAGTTGACTTTTTTGAAAAATAGAAA-TTGAAAA
45418704 ACAGAAACTG
Statistics
Matches: 173, Mismatches: 19, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
71 3 0.02
72 5 0.03
73 42 0.24
74 37 0.21
76 25 0.14
77 35 0.20
80 21 0.12
81 5 0.03
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (77 bp):
AACTCACCTCTCGCAATATAAGTTGACTTTTTTGAAAAATAGAAATTGAAAATACCTCGACATGT
GACCCGCGGTTC
Found at i:45418632 original size:74 final size:75
Alignment explanation
Indices: 45418472--45418703 Score: 287
Period size: 73 Copynumber: 3.1 Consensus size: 75
45418462 AAAATAGATT
* * * *
45418472 TTGAAAATACCTCGACATGTGACCCGCGGTTCAACTCACTTTTCGCAATATGAGTTGACTTTTTT
1 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
*
45418537 GAAAAATATAAA
64 GAAAAACATAAA
* *
45418549 TTGAAAATACCTCGACATGTGACCCG-GGCTCAAATCACCTCTGGCAATATGCA-TTGATTTTTG
1 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATG-AGTTGATTTTTG
45418612 AAAAACATAAA
65 AAAAACATAAA
45418623 TTGAAAATACCTC-AGC--GTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TTGAAAATACCTCGA-CATGTGACCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
45418684 GACAAACAGAAA
64 GAAAAACATAAA
45418696 TTTGAAAA
1 -TTGAAAA
45418704 ACAGAAACTG
Statistics
Matches: 139, Mismatches: 10, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
71 3 0.02
72 5 0.04
73 43 0.31
74 37 0.27
76 24 0.17
77 27 0.19
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (75 bp):
TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
AAAACATAAA
Found at i:45418705 original size:15 final size:15
Alignment explanation
Indices: 45418681--45418710 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45418671 TGAGTTGATT
*
45418681 TTTGACAAACAGAAA
1 TTTGAAAAACAGAAA
45418696 TTTGAAAAACAGAAA
1 TTTGAAAAACAGAAA
45418711 CTGAAAATAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.10, G:0.13, T:0.20
Consensus pattern (15 bp):
TTTGAAAAACAGAAA
Found at i:45418761 original size:90 final size:88
Alignment explanation
Indices: 45418608--45418773 Score: 262
Period size: 90 Copynumber: 1.9 Consensus size: 88
45418598 TGCATTGATT
* * *
45418608 TTTGAAAAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAACAGAAACTGAAAATACCTCAGCGTGCACTGAGGCTCAACTCACCTCTCGCAATATG
45418673 AGTTGATTTTTGACAAACAGAAA
66 AGTTGATTTTTGACAAACAGAAA
*
45418696 TTTGAAAAACAGAAACTGAAAATACCTCAGCATGTGAGAC-GAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAACTGAAAATACCTCAGC--GTG-CACTGAGGCTCAACTCACCTCTCGCAAT
45418760 ATGAGTTGATTTTT
63 ATGAGTTGATTTTT
45418774 TTGAAAAGAA
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
88 29 0.41
90 41 0.58
91 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.27
Consensus pattern (88 bp):
TTTGAAAAACAGAAACTGAAAATACCTCAGCGTGCACTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGACAAACAGAAA
Found at i:45418927 original size:90 final size:87
Alignment explanation
Indices: 45418773--45418944 Score: 238
Period size: 90 Copynumber: 1.9 Consensus size: 87
45418763 AGTTGATTTT
* * * *
45418773 TTTGAAAAGAAGAAATTTAAAATTCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAAAAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
*
45418838 AGTTGATTTTTGAAAAACATAA
66 AATTGATTTTTGAAAAACATAA
* *
45418860 TTTGAAAAAACAGAAATTGAAAATACCTCAGTACGTGAACCC-AGGTTCAACTCACCTCTCGCCA
1 TTTGAAAAAA-AGAAATTGAAAATACCTCAG--CGTG-ACCCGAGGCTCAACTCACCTCTCGCAA
45418924 TATGAATTGATTTTTGAAAAA
62 TATGAATTGATTTTTGAAAAA
45418945 TAGCATTTGA
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
87 9 0.12
88 18 0.24
90 44 0.59
91 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.27
Consensus pattern (87 bp):
TTTGAAAAAAAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AATTGATTTTTGAAAAACATAA
Found at i:45419001 original size:73 final size:73
Alignment explanation
Indices: 45418860--45419103 Score: 310
Period size: 73 Copynumber: 3.3 Consensus size: 73
45418850 AAAAACATAA
* * *
45418860 TTTGAAAAAACAGAAATTGAAAATACCTCAGTACGTGAACCC-AGGTTCAACTCACCTCTCGCCA
1 TTTG-AAAAATAGAAATTGAAAATACCTCAGT--GTG-ACCCGAGGCTCAACTCACCTCTCGCAA
*
45418924 TATGAATTGATT
62 TATGAGTTGATT
* * * *
45418936 TTTGAAAAATAGCATTTGAAAATACCTCAGTGTGCCCCGAGGCCCAACTCACCTCTCGCAATATG
1 TTTGAAAAATAGAAATTGAAAATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
45419001 AGTTGATT
66 AGTTGATT
* * * * * *
45419009 TTTGAAATATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATG
1 TTTGAAAAATAGAAATTGAAAATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
45419074 AGTTGATT
66 AGTTGATT
*
45419082 TTTGAAAAGTAGAAATTGAAAA
1 TTTGAAAAATAGAAATTGAAAA
45419104 ACAGAAATTG
Statistics
Matches: 147, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
72 3 0.02
73 116 0.79
75 24 0.16
76 4 0.03
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (73 bp):
TTTGAAAAATAGAAATTGAAAATACCTCAGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATT
Found at i:45419015 original size:163 final size:161
Alignment explanation
Indices: 45418534--45419029 Score: 635
Period size: 165 Copynumber: 3.0 Consensus size: 161
45418524 AGTTGACTTT
* * * * *
45418534 TTTGAAAAATATAAATTGAAAATACCTC-GACATGTG-ACCCGGGCTCAAATCACCTCTGGCAAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAGAC--GTGAACCCAGGCTCAACTCACCTCTCGCAAT
* * * *
45418597 ATGCATTGATTTTTGAAAAACATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
64 ATGAATTGATTTTTGAAAAA-AGAATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCT
*
45418662 CTCGCAATATGAGTTGATTTTTGACAAACAGAAA
128 CTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
* * *
45418696 TTTGAAAAACAGAAACTGAAAATACCTCAGCATGTGAGA-CGAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAATTGAAAATACCTCAG-ACGTGA-ACCCAGGCTCAACTCACCTCTCGCAAT
* *
45418760 ATGAGTTGATTTTTTTGAAAAGAAGAAATTT-AAAATTCCTCAGCGTGCCCCGAGGCTCAACTCA
64 ATGAATTGA--TTTTTGAAAA-AAG-AATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCA
*
45418824 CCTCTCGCAATATGAGTTGATTTTTGAAAAACA-TAA
125 CCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
* *
45418860 TTTGAAAAAACAGAAATTGAAAATACCTCAGTACGTGAACCCAGGTTCAACTCACCTCTCGCCAT
1 TTTG-AAAAACAGAAATTGAAAATACCTCAG-ACGTGAACCCAGGCTCAACTCACCTCTCGCAAT
* * *
45418925 ATGAATTGATTTTTGAAAAATAGCATTTGAAAATACCTCAGTGTGCCCCGAGGCCCAACTCACCT
64 ATGAATTGATTTTTGAAAAA-AGAATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCT
* *
45418990 CTCGCAATATGAGTTGATTTTTGAAATATAGAAA
128 CTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
45419024 -TTGAAA
1 TTTGAAA
45419030 TTACCTCAGC
Statistics
Matches: 291, Mismatches: 30, Indels: 26
0.84 0.09 0.07
Matches are distributed among these distances:
162 36 0.12
163 105 0.36
164 11 0.04
165 134 0.46
166 5 0.02
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (161 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGACGTGAACCCAGGCTCAACTCACCTCTCGCAATAT
GAATTGATTTTTGAAAAAAGAATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTGAAAAACAGAAA
Found at i:45419114 original size:87 final size:87
Alignment explanation
Indices: 45419010--45419192 Score: 300
Period size: 87 Copynumber: 2.1 Consensus size: 87
45419000 GAGTTGATTT
* *
45419010 TTGAAATATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
45419075 GTTGA-TTTTTGAAAAGTAGAAA
66 GTTGATTTTTTGAAAA-TAGAAA
*
45419097 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
45419162 GTTGATTTTTTTGAAAATAGAAA
66 GTTGA-TTTTTTGAAAATAGAAA
45419185 -T-AAAAACA
1 TTGAAAAACA
45419193 TCAAAATACC
Statistics
Matches: 91, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
86 7 0.08
87 68 0.75
88 6 0.07
89 10 0.11
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (87 bp):
TTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCACCTCTCGCAATATGA
GTTGATTTTTTGAAAATAGAAA
Found at i:45431692 original size:21 final size:20
Alignment explanation
Indices: 45431663--45431707 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
45431653 AAGATATACC
* *
45431663 TATATATATATATTAAAGATA
1 TATACATATATAATAAA-ATA
*
45431684 TATACATATGTAATAAAATA
1 TATACATATATAATAAAATA
45431704 TATA
1 TATA
45431708 AATGACATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (20 bp):
TATACATATATAATAAAATA
Found at i:45431778 original size:18 final size:19
Alignment explanation
Indices: 45431752--45431791 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
45431742 TATGATAAAA
*
45431752 ATAATAATATACATAATAT
1 ATAATAATACACATAATAT
*
45431771 ATAA-AATACATATAATAT
1 ATAATAATACACATAATAT
45431789 ATA
1 ATA
45431792 CATATACTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (19 bp):
ATAATAATACACATAATAT
Found at i:45431779 original size:16 final size:15
Alignment explanation
Indices: 45431751--45431821 Score: 51
Period size: 16 Copynumber: 4.7 Consensus size: 15
45431741 GTATGATAAA
*
45431751 AATAATAATATACAT
1 AATAATAAAATACAT
45431766 AATATATAAAATACAT
1 AATA-ATAAAATACAT
*
45431782 -ATAAT-ATATACAT
1 AATAATAAAATACAT
*
45431795 -ATACTAGAAATGACAAT
1 AATAATA-AAAT-AC-AT
45431812 AAT-ATAAAAT
1 AATAATAAAAT
45431822 GAACTTGCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
13 11 0.24
14 2 0.04
15 10 0.22
16 16 0.36
17 4 0.09
18 2 0.04
ACGTcount: A:0.59, C:0.07, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAAAATACAT
Found at i:45431792 original size:13 final size:14
Alignment explanation
Indices: 45431752--45431797 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
45431742 TATGATAAAA
45431752 ATAATAATATACAT
1 ATAATAATATACAT
*
45431766 AATATATAAAATACAT
1 -ATA-ATAATATACAT
45431782 ATAAT-ATATACAT
1 ATAATAATATACAT
45431795 ATA
1 ATA
45431798 CTAGAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 10 0.36
14 2 0.07
15 6 0.21
16 10 0.36
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATAATATACAT
Found at i:45431814 original size:28 final size:28
Alignment explanation
Indices: 45431751--45431817 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 28
45431741 GTATGATAAA
45431751 AATAATAATATACATAATATATAAAATAC
1 AATAAT-ATATACATAATATATAAAATAC
*
45431780 ATATAATATATACAT-ATACTA-GAAATGAC
1 A-ATAATATATACATAATA-TATAAAAT-AC
45431809 AATAATATA
1 AATAATATA
45431818 AAATGAACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
28 15 0.44
29 14 0.41
30 5 0.15
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.31
Consensus pattern (28 bp):
AATAATATATACATAATATATAAAATAC
Found at i:45431913 original size:17 final size:19
Alignment explanation
Indices: 45431891--45431936 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
45431881 AGAGATACTT
*
45431891 AATATATA-ATAAT-TTAA
1 AATATATATATAATATAAA
*
45431908 AATATATATATGATATAAA
1 AATATATATATAATATAAA
45431927 AATATATATA
1 AATATATATA
45431937 GAACGTAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 8 0.32
18 4 0.16
19 13 0.52
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AATATATATATAATATAAA
Found at i:45432309 original size:3 final size:3
Alignment explanation
Indices: 45432301--45432334 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
45432291 ATGACAACAC
*
45432301 ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
45432335 ATTAAAGTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:45432986 original size:15 final size:15
Alignment explanation
Indices: 45432962--45432993 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
45432952 TTCGAGTAGG
*
45432962 AAAAGGAAAGAAAAA
1 AAAAGAAAAGAAAAA
45432977 AAAAGAAAAGAAAAA
1 AAAAGAAAAGAAAAA
45432992 AA
1 AA
45432994 GAAGGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAGAAAAA
Found at i:45433546 original size:16 final size:18
Alignment explanation
Indices: 45433520--45433553 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
45433510 GTTATTGTTT
45433520 GGGTTTGTGGG-TTAGTG
1 GGGTTTGTGGGTTTAGTG
45433537 GGGTTT-TGGGTTTAGTG
1 GGGTTTGTGGGTTTAGTG
45433554 TAATGTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.06, C:0.00, G:0.50, T:0.44
Consensus pattern (18 bp):
GGGTTTGTGGGTTTAGTG
Found at i:45434330 original size:23 final size:23
Alignment explanation
Indices: 45434304--45434350 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
45434294 ATTTGTAATT
45434304 ATAAATTATAATTTATGATCATA
1 ATAAATTATAATTTATGATCATA
*
45434327 ATAAATTATAATTTCTGATCATA
1 ATAAATTATAATTTATGATCATA
45434350 A
1 A
45434351 AATCTACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (23 bp):
ATAAATTATAATTTATGATCATA
Found at i:45442247 original size:16 final size:16
Alignment explanation
Indices: 45442221--45442259 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
45442211 GGCAACCCAA
*
45442221 ATTTT-TTATTTTTTT
1 ATTTTATTATTTATTT
45442236 ATTTTATTATTTATTT
1 ATTTTATTATTTATTT
*
45442252 ATATTATT
1 ATTTTATT
45442260 TACTATTTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
ATTTTATTATTTATTT
Found at i:45442261 original size:20 final size:20
Alignment explanation
Indices: 45442225--45442268 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
45442215 ACCCAAATTT
* *
45442225 TTTATTTTTTTATTTTATTA
1 TTTATTTTATTATTTTACTA
45442245 TTTATTTATATTA-TTTACTA
1 TTTATTT-TATTATTTTACTA
45442265 TTTA
1 TTTA
45442269 CTATTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTATTTTATTATTTTACTA
Found at i:45447621 original size:15 final size:15
Alignment explanation
Indices: 45447601--45447649 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
45447591 ATCATATCTC
45447601 ATATTTTCCATTTCA
1 ATATTTTCCATTTCA
45447616 ATATTTTCTCATCTT--
1 ATATTTTC-CAT-TTCA
*
45447631 ATCTTTTCCATTTCA
1 ATATTTTCCATTTCA
45447646 ATAT
1 ATAT
45447650 CAATCACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 2 0.07
14 3 0.11
15 18 0.64
16 3 0.11
17 2 0.07
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.55
Consensus pattern (15 bp):
ATATTTTCCATTTCA
Found at i:45448825 original size:18 final size:18
Alignment explanation
Indices: 45448802--45448838 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
45448792 AAAAATAGAG
*
45448802 AAAAATTAAGGATTCTCT
1 AAAAATGAAGGATTCTCT
45448820 AAAAATGAAGGATTCTCT
1 AAAAATGAAGGATTCTCT
45448838 A
1 A
45448839 TCTCCTTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.30
Consensus pattern (18 bp):
AAAAATGAAGGATTCTCT
Found at i:45449518 original size:16 final size:16
Alignment explanation
Indices: 45449503--45449560 Score: 89
Period size: 16 Copynumber: 3.6 Consensus size: 16
45449493 GATTATAACT
*
45449503 CTATTTCATTACAACT
1 CTATTTCATTACAACC
*
45449519 CTATTACATTACAACC
1 CTATTTCATTACAACC
45449535 CTATTTCATTACAACC
1 CTATTTCATTACAACC
*
45449551 CTATTCCATT
1 CTATTTCATT
45449561 CCACTGAACC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (16 bp):
CTATTTCATTACAACC
Found at i:45449539 original size:32 final size:32
Alignment explanation
Indices: 45449494--45449560 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
45449484 TGAATTACTG
* * *
45449494 ATTATAACTCTATTTCATTACAACTCTATTAC
1 ATTACAACCCTATTTCATTACAACCCTATTAC
*
45449526 ATTACAACCCTATTTCATTACAACCCTATTCC
1 ATTACAACCCTATTTCATTACAACCCTATTAC
45449558 ATT
1 ATT
45449561 CCACTGAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.27, G:0.00, T:0.40
Consensus pattern (32 bp):
ATTACAACCCTATTTCATTACAACCCTATTAC
Found at i:45453114 original size:27 final size:27
Alignment explanation
Indices: 45453083--45453177 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 27
45453073 TTAGTTTACC
* *
45453083 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
45453110 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TACCCTCGATTTGTA
* *
45453137 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
45453164 AAATCACTAAAATA
1 AAATTACTCAAATA
45453178 AGATAGAATT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.05
27 49 0.88
28 4 0.07
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
AAATTACTCAAATACCCTCGATTTGTA
Found at i:45453222 original size:27 final size:27
Alignment explanation
Indices: 45453182--45453485 Score: 428
Period size: 27 Copynumber: 11.3 Consensus size: 27
45453172 AAAATAAGAT
*
45453182 AGAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
45453209 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
45453236 AAAATTACTATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
45453263 AGAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
45453290 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
45453317 AGAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
45453344 AGAATTACTATTTTACCCTTGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
45453371 AGAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
45453398 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
45453425 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
** *
45453452 AGAATTACTGTTTTATCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
45453479 AAAATTA
1 AGAATTA
45453486 TTGAAATACC
Statistics
Matches: 250, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 250 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:45453285 original size:81 final size:81
Alignment explanation
Indices: 45453180--45453485 Score: 477
Period size: 81 Copynumber: 3.8 Consensus size: 81
45453170 CTAAAATAAG
* * *
45453180 ATAGAATTACCATTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACT
1 ATAGAATTACCATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACC
45453245 ATTTTACCCTCGATTT
66 ATTTTACCCTCGATTT
* *
45453261 ACAGAATTACCATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACC
1 ATAGAATTACCATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACC
*
45453326 GTTTTACCCTCGATTT
66 ATTTTACCCTCGATTT
* ** * * *
45453342 ATAGAATTACTATTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACC
1 ATAGAATTACCATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACC
45453407 ATTTTACCCTCGATTT
66 ATTTTACCCTCGATTT
* * *
45453423 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTATCCTCGATTTACAAAATTA
1 ATAGAATTACCATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTA
45453486 TTGAAATACC
Statistics
Matches: 205, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 205 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACC
ATTTTACCCTCGATTT
Found at i:45453519 original size:27 final size:27
Alignment explanation
Indices: 45453489--45453631 Score: 128
Period size: 27 Copynumber: 5.3 Consensus size: 27
45453479 AAAATTATTG
*
45453489 AAATACCCTTAGTTTACAAAATTACCA
1 AAATACCCTTAGTTTATAAAATTACCA
* * *
45453516 AAATACCC-TCGATCAGTAAAATTACCA
1 AAATACCCTTAGTTTA-TAAAATTACCA
* * * *
45453543 AAATACCCCTGGTTTGTAAAATTACTA
1 AAATACCCTTAGTTTATAAAATTACCA
* * * *
45453570 AAATAACCTTGGTTTGTAAAATTACTA
1 AAATACCCTTAGTTTATAAAATTACCA
* *
45453597 AAATACCCTT-GACTTGTAAAATTACCA
1 AAATACCCTTAG-TTTATAAAATTACCA
45453624 AAATACCC
1 AAATACCC
45453632 CTGATTTGTG
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.05
27 91 0.92
28 3 0.03
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATACCCTTAGTTTATAAAATTACCA
Found at i:45453564 original size:81 final size:81
Alignment explanation
Indices: 45453479--45453655 Score: 230
Period size: 81 Copynumber: 2.2 Consensus size: 81
45453469 CTCGATTTAC
* *
45453479 AAAATTATTGAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTATTAAAATAACCTTAGTTTACAAAATTACCAAAATACCCTCGACT-AGTAAAATTACCA
*
45453543 AAATACCCCTGGTTTGT
65 AAATACCCCTGATTTGT
* * ** * * *
45453560 AAAATTACTAAAATAACCTTGGTTTGTAAAATTACTAAAATACCCTTGACTTGTAAAATTACCAA
1 AAAATTATTAAAATAACCTTAGTTTACAAAATTACCAAAATACCCTCGACTAGTAAAATTACCAA
45453625 AATACCCCTGATTTGT
66 AATACCCCTGATTTGT
* *
45453641 GAAATTATCAAAATA
1 AAAATTATTAAAATA
45453656 CTCTCGATTT
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
81 81 0.99
82 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTATTAAAATAACCTTAGTTTACAAAATTACCAAAATACCCTCGACTAGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:45453640 original size:27 final size:27
Alignment explanation
Indices: 45453506--45453687 Score: 181
Period size: 27 Copynumber: 6.8 Consensus size: 27
45453496 CTTAGTTTAC
**
45453506 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
45453533 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
45453560 AAAATTACTAAAATAACCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
45453587 AAAATTACTAAAATACCCTTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
45453614 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
45453641 GAAATTATCAAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* * *
45453668 ATAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
45453688 TAGGATAGAA
Statistics
Matches: 133, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
26 13 0.10
27 116 0.87
28 4 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Done.