Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 145 of 349
Found at i:46280115 original size:27 final size:26
Alignment explanation
Indices: 46280084--46280261 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
46280074 TAAATTGTAC
46280084 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
46280111 TGCACTAAGTGTGCGAATTGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
46280137 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
46280165 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* * *
46280193 AGCACTAAGTGTGCGATTTAATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
46280220 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
46280247 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46280262 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.79
28 26 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:46280200 original size:82 final size:81
Alignment explanation
Indices: 46280085--46280240 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
46280075 AAATTGTACA
* *
46280085 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAATTGAA-TATG-ATGCACTAAGT
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCG-ATTGAATTACGTA-GCACTAAGT
46280148 GTGCGAATTGACCATGCG
64 GTGCGAATTGACCATGCG
* *
46280166 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTAATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGATTGAATTACGTAGCACTAAGTG
*
46280231 TGCGAGTTGA
65 TGCGAATTGA
46280241 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 20 0.30
82 46 0.69
83 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGATTGAATTACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46280252 original size:82 final size:81
Alignment explanation
Indices: 46280081--46280261 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
46280071 GATTAAATTG
* *
46280081 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAATTGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGATGCACTAA
46280146 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
46280162 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG-ATTTAATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAATTGAA-TACGAT-GCAC
* **
46280225 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
46280244 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
46280262 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 23 0.27
82 61 0.73
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:46280272 original size:27 final size:27
Alignment explanation
Indices: 46280166--46280272 Score: 74
Period size: 27 Copynumber: 3.9 Consensus size: 27
46280156 TGACCATGCG
* * * *
46280166 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
* *
46280194 GCACTAAGTGTGCGA-TTTAAT-TACGTA
1 GCACTAAGTGTGCGAGCTCAATATA--TA
* * *
46280221 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
46280248 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
46280273 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.02
26 4 0.06
27 39 0.60
28 19 0.29
29 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:46287435 original size:13 final size:13
Alignment explanation
Indices: 46287417--46287441 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46287407 TAATGGTATA
46287417 TTGAATCCATGAC
1 TTGAATCCATGAC
46287430 TTGAATCCATGA
1 TTGAATCCATGA
46287442 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:46288021 original size:27 final size:26
Alignment explanation
Indices: 46287990--46288167 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 26
46287980 TAAATTGTAC
46287990 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* *
46288017 TGCACTAAGTGTGCGAATTGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
46288043 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
46288071 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
46288099 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
46288126 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
46288153 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46288168 GGCTCAATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:46288106 original size:82 final size:81
Alignment explanation
Indices: 46287991--46288146 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46287981 AAATTGTACA
* *
46287991 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAATTGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGTA-GCACTAAGTG
46288055 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* * *
46288072 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGTAGCACTAAGTG
*
46288137 TGCGAGTTGA
65 TGCGAATTGA
46288147 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46288158 original size:82 final size:81
Alignment explanation
Indices: 46287987--46288167 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
46287977 GATTAAATTG
* *
46287987 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAATTGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGATGCACTAA
46288052 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * *
46288068 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGAT-GCACT
* **
46288132 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
46288150 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
46288168 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAATTGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:46288178 original size:27 final size:27
Alignment explanation
Indices: 46288072--46288178 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
46288062 TGACCATGCG
* * * *
46288072 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
46288100 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
46288127 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
46288154 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
46288179 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:46292048 original size:19 final size:20
Alignment explanation
Indices: 46292011--46292048 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
46292001 ATAAGGTGGT
46292011 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
46292031 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
46292049 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:46300791 original size:42 final size:40
Alignment explanation
Indices: 46300682--46300832 Score: 108
Period size: 43 Copynumber: 3.5 Consensus size: 40
46300672 ATCTGAAATA
* * *
46300682 TCGTGTAAGACCGTTTCTGGGACACAGGCTTCG-ATTTGAGATT
1 TCGTGTAAGACCCTGTCTGGGACAC-GGCATCGTA-TT--GATT
* * *
46300725 TACGTGTAAGACCATGTTTAGGACATCGGCATCGTATCTGATT
1 T-CGTGTAAGACCCTGTCTGGGACA-CGGCATCGTAT-TGATT
*
46300768 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATT
1 TCGTGTAAGACCCTGTCTGGGACA-CGGCATCG-TATTG-ATT
* *
46300811 ACATGTAAGACCAC-GTCTGGGA
1 TCGTGTAAGACC-CTGTCTGGGA
46300833 TGTTGGCATT
Statistics
Matches: 89, Mismatches: 12, Indels: 14
0.77 0.10 0.12
Matches are distributed among these distances:
42 29 0.33
43 30 0.34
44 27 0.30
45 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (40 bp):
TCGTGTAAGACCCTGTCTGGGACACGGCATCGTATTGATT
Found at i:46300829 original size:43 final size:43
Alignment explanation
Indices: 46300683--46300832 Score: 130
Period size: 42 Copynumber: 3.5 Consensus size: 43
46300673 TCTGAAATAT
*** *
46300683 CGTGTAAGACCGTTTCTGGGACACAGGCTTCGAT-TTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACACAGGCATCGATATTGA-A-TTA
* * * *
46300727 CGTGTAAGACCATGTTTAGGACATC-GGCATCG-TATCTG-ATTT
1 CGTGTAAGACCACGTCTGGGACA-CAGGCATCGATAT-TGAATTA
*
46300769 CGTGTAAGACC-CTGTCTGGGACAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCAC-GTCTGGGACACAGGCATCGATATTGAATTA
*
46300812 CATGTAAGACCACGTCTGGGA
1 CGTGTAAGACCACGTCTGGGA
46300833 TGTTGGCATT
Statistics
Matches: 86, Mismatches: 12, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
42 30 0.35
43 26 0.30
44 27 0.31
45 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACACAGGCATCGATATTGAATTA
Found at i:46302796 original size:43 final size:43
Alignment explanation
Indices: 46302749--46302861 Score: 140
Period size: 44 Copynumber: 2.6 Consensus size: 43
46302739 GGAACGTTGA
* *
46302749 CTTCGATCTGAAATATCGTGTAAGACCGTGTCTGGGACACAGG
1 CTTCGATCTGAAATTTCGTGTAAGACCATGTCTGGGACACAGG
* **
46302792 CTTCGATTTGAAATTTACGTGTAAGACCATGTCTGGGACATTGG
1 CTTCGATCTGAAATTT-CGTGTAAGACCATGTCTGGGACACAGG
*
46302836 CATCGTATCTG--ATTTCGTGTAAGACC
1 CTTCG-ATCTGAAATTTCGTGTAAGACC
46302862 CTATTTGGGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
42 11 0.18
43 18 0.30
44 28 0.46
45 4 0.07
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
CTTCGATCTGAAATTTCGTGTAAGACCATGTCTGGGACACAGG
Found at i:46302880 original size:42 final size:42
Alignment explanation
Indices: 46302751--46302915 Score: 134
Period size: 43 Copynumber: 3.8 Consensus size: 42
46302741 AACGTTGACT
* * *
46302751 TCGATCTGAAATATCGTGTAAGACCGTGTCTGGGACACAGGCT
1 TCGATCTG-AATTTCGTGTAAGACCATGTCTGGGACACAGGCA
* **
46302794 TCGATTTGAAATTTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATCTG-AATTT-CGTGTAAGACCATGTCTGGGACACAGGCA
* * * *
46302838 TCGTATCTG-ATTTCGTGTAAGACCCTATTTGGGACAGAGGCA
1 TCG-ATCTGAATTTCGTGTAAGACCATGTCTGGGACACAGGCA
* * * * * *
46302880 TTGATATTGAATTACATGTAAGACCACGTCTAGGAC
1 TCGAT-CTGAATTTCGTGTAAGACCATGTCTGGGAC
46302916 GTTGGCATTG
Statistics
Matches: 97, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 2 0.02
42 28 0.29
43 35 0.36
44 28 0.29
45 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (42 bp):
TCGATCTGAATTTCGTGTAAGACCATGTCTGGGACACAGGCA
Found at i:46306333 original size:16 final size:16
Alignment explanation
Indices: 46306312--46306362 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
46306302 AAGAAAGAGC
46306312 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
46306328 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
46306344 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
46306360 AAA
1 AAA
46306363 ATACTAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:46310152 original size:15 final size:16
Alignment explanation
Indices: 46310120--46310152 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
46310110 ACCTTGAATT
46310120 TGTTTAATTTTTTATG
1 TGTTTAATTTTTTATG
46310136 TGTTTAATTTTTT-TG
1 TGTTTAATTTTTTATG
46310151 TG
1 TG
46310153 AAAAAAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.70
Consensus pattern (16 bp):
TGTTTAATTTTTTATG
Found at i:46312004 original size:89 final size:89
Alignment explanation
Indices: 46311853--46312032 Score: 306
Period size: 89 Copynumber: 2.0 Consensus size: 89
46311843 GGTTAATAGT
*
46311853 GCCATACTTGATGCCATTCACTCTTTGAGCAATGATGTTCGAAGTCTTCAAAAAGAGGTTCGATC
1 GCCATAATTGATGCCATTCACTCTTTGAGCAATGATGTTCGAAGTCTTCAAAAAGAGGTTCGATC
*
46311918 TCATAGGGAAGAAATGAACTCTAA
66 TCATAGGGAAGAAATGAACACTAA
* * *
46311942 GCCATAATTGATGCCATTCACTCTTTGAGCAATGATGTTCGAGGTCTTTAAGAAGAGGTTCGATC
1 GCCATAATTGATGCCATTCACTCTTTGAGCAATGATGTTCGAAGTCTTCAAAAAGAGGTTCGATC
*
46312007 TCATAGGGAAGACATGAACACTAA
66 TCATAGGGAAGAAATGAACACTAA
46312031 GC
1 GC
46312033 TATCTATTTT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (89 bp):
GCCATAATTGATGCCATTCACTCTTTGAGCAATGATGTTCGAAGTCTTCAAAAAGAGGTTCGATC
TCATAGGGAAGAAATGAACACTAA
Found at i:46312787 original size:21 final size:21
Alignment explanation
Indices: 46312724--46312788 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 21
46312714 TCAAGTAGTG
* *
46312724 AAAATGA-TTTCAATCAAGTT
1 AAAATGATTTTCAAACAAGTC
* *
46312744 AAAATCATTTT--AGCACA-TC
1 AAAATGATTTTCAAACA-AGTC
46312763 AAAATGATTTTCAAACAAGTC
1 AAAATGATTTTCAAACAAGTC
46312784 AAAAT
1 AAAAT
46312789 TGCTCAAGGC
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
19 14 0.40
20 8 0.23
21 13 0.37
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.31
Consensus pattern (21 bp):
AAAATGATTTTCAAACAAGTC
Found at i:46316019 original size:6 final size:6
Alignment explanation
Indices: 46315991--46316078 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
46315981 AAGAAACATT
* * *
46315991 ATCAGA A-CTAGA ATCAAA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
46316040 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
46316079 TACTATCAGG
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:46316043 original size:31 final size:31
Alignment explanation
Indices: 46316000--46316110 Score: 132
Period size: 31 Copynumber: 3.5 Consensus size: 31
46315990 TATCAGAACT
* *
46316000 AGAATCAAAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
46316031 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* ** *
46316062 AGAATCAAAATCAGAATTACTATCAGGTAAT
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
46316093 AGAATAAAAAATCAGAAT
1 AGAAT-CAAAATCAGAAT
46316111 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 59 0.84
32 11 0.16
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.21
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:46316246 original size:27 final size:26
Alignment explanation
Indices: 46316215--46316310 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 26
46316205 TTATCAAATG
* *
46316215 TTGTGACAAAGTCACCAGATACAGATA
1 TTGTGGCAAAGCCACCAGA-ACAGATA
* *
46316242 TTGTGGCAGAGCCACCAGAATAGATA
1 TTGTGGCAAAGCCACCAGAACAGATA
*
46316268 TTTGTGGCATAGCCACCAGAAACAGATA
1 -TTGTGGCAAAGCCACCAG-AACAGATA
*
46316296 ATGTGGCAAAGCCAC
1 TTGTGGCAAAGCCAC
46316311 TTAACAAAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 6 0.10
27 46 0.78
28 7 0.12
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
TTGTGGCAAAGCCACCAGAACAGATA
Found at i:46316498 original size:22 final size:22
Alignment explanation
Indices: 46316470--46316533 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
46316460 CAAATACGTG
*
46316470 TGGCACACAGCCATAATCAGGT
1 TGGCACAAAGCCATAATCAGGT
*
46316492 TGGCACAAAGCCAT-ATGTAGGT
1 TGGCACAAAGCCATAAT-CAGGT
*
46316514 TGACACAAAGCCATAATCAG
1 TGGCACAAAGCCATAATCAG
46316534 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAATCAGGT
Found at i:46317025 original size:27 final size:27
Alignment explanation
Indices: 46316967--46317141 Score: 217
Period size: 27 Copynumber: 6.3 Consensus size: 27
46316957 GGGGCAAAAT
* * * *
46316967 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
46316993 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
46317020 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
46317047 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
46317074 GGTAATTCTACCCTACAGGGTCTGTAGGTATTCC
1 GGTAATTCTACCCTACAGGG---GTA--T-TT-C
46317108 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
46317135 GGTAATT
1 GGTAATT
46317142 TTATAAACAA
Statistics
Matches: 131, Mismatches: 10, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
26 14 0.11
27 84 0.64
28 2 0.02
29 1 0.01
30 3 0.02
31 3 0.02
32 1 0.01
33 2 0.02
34 21 0.16
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:46317184 original size:54 final size:54
Alignment explanation
Indices: 46317123--46317303 Score: 292
Period size: 54 Copynumber: 3.4 Consensus size: 54
46317113 TTCTACCCTA
* *
46317123 CAGGGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
* * * *
46317177 CAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACATAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
*
46317231 CAGGGGTATTTTGGTAATTTTATAAGCCAAGGGTA-TTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
46317284 CAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
46317304 GGTAAACTAA
Statistics
Matches: 116, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
53 36 0.31
54 80 0.69
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
Found at i:46317310 original size:27 final size:27
Alignment explanation
Indices: 46317126--46317303 Score: 241
Period size: 27 Copynumber: 6.6 Consensus size: 27
46317116 TACCCTACAG
* *
46317126 GGGTATTTCGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
46317153 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
46317180 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
46317207 GGGTATTTTGGTAATTTTACATACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
46317234 GGGTATTTTGGTAATTTTATAAGCCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
46317261 GGGTA-TTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
46317287 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
46317304 GGTAAACTAA
Statistics
Matches: 130, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.17
27 108 0.83
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:46318819 original size:46 final size:44
Alignment explanation
Indices: 46318750--46318868 Score: 159
Period size: 46 Copynumber: 2.6 Consensus size: 44
46318740 GTTATTTGTC
*
46318750 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATG
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATG
*
46318794 TAAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTACAAGATG
1 T--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATG
* *
46318840 TGTCAGTGTAAGACCATGTCTAGGACATG
1 TGCCAGTGTAAGA-CATGTCTGGGACATG
46318869 GCATTGGCAC
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
44 12 0.18
45 15 0.23
46 39 0.59
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATG
Found at i:46323386 original size:30 final size:30
Alignment explanation
Indices: 46323345--46323401 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
46323335 AAAATTATAT
*
46323345 TTTGGCAAAATTACAATTTTGCCCCTAAAC
1 TTTGGCAAAATTACAATTTTACCCCTAAAC
* *
46323375 TTTGTCAAAATTACATTTTTACCCCTA
1 TTTGGCAAAATTACAATTTTACCCCTA
46323402 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTGGCAAAATTACAATTTTACCCCTAAAC
Found at i:46326086 original size:42 final size:43
Alignment explanation
Indices: 46325978--46326088 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
46325968 AGCATATACA
* * * * *
46325978 ATGCCAACGTCCCAGACGTGGTCATACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACATAG
* * * * *
46326021 ATGCCATTGTCCCAGATAAGGTCTTACATGAAATCAGATA-AG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACATAG
46326063 ATGCCAATGTCCCAGACATGGTCTTA
1 ATGCCAATGTCCCAGACATGGTCTTA
46326089 TACTCAAAAT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
42 24 0.44
43 31 0.56
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAACATAG
Found at i:46340489 original size:27 final size:27
Alignment explanation
Indices: 46340458--46340513 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
46340448 ATTACTAGAA
46340458 TGGTTTATAAAATCACCAAAATACCCC
1 TGGTTTATAAAATCACCAAAATACCCC
* *
46340485 TGGTTTGTAAAATTACCAAAATACCCC
1 TGGTTTATAAAATCACCAAAATACCCC
46340512 TG
1 TG
46340514 ATTTGTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.29
Consensus pattern (27 bp):
TGGTTTATAAAATCACCAAAATACCCC
Found at i:46340518 original size:27 final size:27
Alignment explanation
Indices: 46340465--46340646 Score: 143
Period size: 27 Copynumber: 6.7 Consensus size: 27
46340455 GAATGGTTTA
* *
46340465 TAAAATCACCAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTG
46340492 TAAAATTACCAAAATACCC-CTGATTTG
1 TAAAATTACCAAAATACCCTC-GATTTG
* ** **
46340519 TGAAATTACTGAAATACCCTCGACCTG
1 TAAAATTACCAAAATACCCTCGATTTG
*** * *
46340546 TAAAATTATTGAAATACCCTCAACTTG
1 TAAAATTACCAAAATACCCTCGATTTG
* * *
46340573 TAAAATTACCAAAGTATCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
*** *
46340600 TAAAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
* *
46340627 CAAAATTATCAAAATACCCT
1 TAAAATTACCAAAATACCCT
46340647 TGTAGGGTAG
Statistics
Matches: 126, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
27 125 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTG
Found at i:46340668 original size:27 final size:27
Alignment explanation
Indices: 46340638--46340878 Score: 270
Period size: 27 Copynumber: 8.9 Consensus size: 27
46340628 AAAATTATCA
* *
46340638 AAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
46340665 AAATACCCCCGTAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
46340692 AAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
46340719 AAATACCCCTGTTGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
46340746 AAATACCCCTGTAGGGTAGAATTA-TCG
1 AAATACCCCTGTAGGGTAGAATTACT-G
* *
46340773 AAATACCCTTGTAGGGTAGAAATACCT-
1 AAATACCCCTGTAGGGTAGAATTA-CTG
* *
46340800 AAATACCCCTGTAGGATAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
46340827 AAATACTCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * * *
46340854 AGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
46340879 CATTTTGCCC
Statistics
Matches: 177, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.01
27 174 0.98
29 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:46340890 original size:81 final size:81
Alignment explanation
Indices: 46340639--46340881 Score: 305
Period size: 81 Copynumber: 3.0 Consensus size: 81
46340629 AAATTATCAA
* * *
46340639 AATACCCTTGTAGGGTAGAAATACTGAAATACCCCCGT-AGGATAGAATTACCGAAATACCCTTG
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGG-TAGAATTACCGAAATACCCTTG
*
46340703 TAGGGTAGAAATACTGA-
65 TAGGGTAGAAATAC-CAT
* * * *
46340720 AATACCCCTGTTGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGT
1 AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGT
46340785 AGGGTAGAAATACC-T
66 AGGGTAGAAATACCAT
* * * *
46340800 AAATACCCCTGTAGGATAGAATTATTGAAATACTCCTGTAAGGTAGAATTACCGAGATACCCTTG
1 -AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTG
*
46340865 TGGGGTA-AAATTACCAT
65 TAGGGTAGAAA-TACCAT
46340882 TTTGCCCCTA
Statistics
Matches: 140, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
80 3 0.02
81 134 0.96
82 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (81 bp):
AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGT
AGGGTAGAAATACCAT
Found at i:46343479 original size:47 final size:47
Alignment explanation
Indices: 46343423--46343670 Score: 351
Period size: 47 Copynumber: 5.3 Consensus size: 47
46343413 TACAAGTATA
* *
46343423 TATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
*
46343470 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
* **
46343517 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
*
46343564 TATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-A-GTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
* *
46343609 TATCTATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGA-A-GTG
1 TA--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
46343656 TATAAATGTGATAAG
1 TAT--ATGTGATAAG
46343671 TCCCGAAGGG
Statistics
Matches: 185, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
45 4 0.02
46 1 0.01
47 180 0.97
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTG
Found at i:46343548 original size:22 final size:22
Alignment explanation
Indices: 46343521--46343642 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
46343511 CATGTGTATG
46343521 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
46343543 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
46343568 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ** *
46343590 TGTGATGAATG-TGAAAGTGTATCTA
1 TGTGAT-AAGGCCG-AA-TG-GCCAA
46343615 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
46343637 TGTGAT
1 TGTGAT
46343643 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 22 0.31
23 16 0.23
24 16 0.23
25 16 0.23
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:46346427 original size:47 final size:47
Alignment explanation
Indices: 46346340--46346606 Score: 403
Period size: 47 Copynumber: 5.6 Consensus size: 47
46346330 GTATATTTGA
46346340 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTG
46346391 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
46346438 ATGAATGTGAAA--GTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
46346483 ATGAATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
46346530 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
46346577 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
46346607 TCCCGAAGGG
Statistics
Matches: 203, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
45 45 0.22
47 143 0.70
51 15 0.07
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:46346473 original size:92 final size:93
Alignment explanation
Indices: 46346359--46346606 Score: 399
Period size: 92 Copynumber: 2.7 Consensus size: 93
46346349 AAAGTGTATA
46346359 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
46346424 TAATGGCCGATGTGATGAATGTGAAA-G
66 TAATGGCCGATGTGATGAATGTGAAAGG
*
46346451 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
46346516 TAATGGCCGATGTGATGAATGTGAAAGTG
66 TAATGGCCGATGTGATGAATGTGAAAG-G
* * * * * * * *
46346545 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
46346607 TCCCGAAGGG
Statistics
Matches: 144, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
92 90 0.62
94 54 0.38
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (93 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGG
Found at i:46346781 original size:37 final size:37
Alignment explanation
Indices: 46346725--46346803 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
46346715 CCGAGCTCTA
* *
46346725 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
46346762 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46346799 AAGAC
1 AAGAC
46346804 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46350120 original size:31 final size:31
Alignment explanation
Indices: 46350082--46350158 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 31
46350072 TTGCATTCCC
* * *
46350082 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
* * *
46350113 ATTCTGATTCTGATTCTGTCACTTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
46350144 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
46350159 TTGATTCTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTA
Found at i:46350124 original size:6 final size:6
Alignment explanation
Indices: 46350082--46350169 Score: 72
Period size: 6 Copynumber: 14.3 Consensus size: 6
46350072 TTGCATTCCC
* * *
46350082 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
46350131 -TCACTTA ATTCTG ATTCTG ATTCTG ATTTTG ATTCTG AT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT
46350170 CTAGTTCTGA
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
5 3 0.05
6 54 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:46351134 original size:18 final size:17
Alignment explanation
Indices: 46351107--46351140 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
46351097 TTTGTTTTCG
*
46351107 CAGTTTGTAGTCTTACTA
1 CAGTTCGTAGT-TTACTA
46351125 CAGTTCGTAGTTTACT
1 CAGTTCGTAGTTTACT
46351141 CTAACTAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.44
Consensus pattern (17 bp):
CAGTTCGTAGTTTACTA
Found at i:46359024 original size:27 final size:27
Alignment explanation
Indices: 46358993--46359170 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
46358983 ATATTGAGCC
* *
46358993 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
46359020 AGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
46359047 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
46359075 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
46359102 CGCACACTTAGTGCCT-CATATTCATTT
1 CGCACACTTAGTG-CTACATAATCAACT
* *
46359129 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
46359156 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46359171 GTACAATTTA
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46367086 original size:27 final size:27
Alignment explanation
Indices: 46367056--46367233 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
46367046 ATATTGAGCC
* *
46367056 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
46367083 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
46367110 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
46367138 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
46367165 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
46367192 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
46367219 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46367234 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:46367195 original size:82 final size:81
Alignment explanation
Indices: 46367077--46367232 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
46367067 TGCTATATAA
* * *
46367077 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
46367142 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
46367159 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
46367223 CACTTAGTGC
65 CACTTAGTGC
46367233 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46371385 original size:28 final size:28
Alignment explanation
Indices: 46371354--46371408 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
46371344 AAAAAAGTAT
46371354 AACAAAATAATTATTAAATAGAGATTGC
1 AACAAAATAATTATTAAATAGAGATTGC
46371382 AACAAAATAATTATTAAATAGAGATTG
1 AACAAAATAATTATTAAATAGAGATTG
46371409 TTTTTCAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.55, C:0.05, G:0.11, T:0.29
Consensus pattern (28 bp):
AACAAAATAATTATTAAATAGAGATTGC
Found at i:46371969 original size:24 final size:23
Alignment explanation
Indices: 46371942--46371986 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
46371932 GCAAGAAATA
46371942 TAAAAAAATTAAAAAATATATTTG
1 TAAAAAAATTAAAAAAT-TATTTG
*
46371966 TAAAAAAATTCAAAAATTATT
1 TAAAAAAATTAAAAAATTATT
46371987 AAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
TAAAAAAATTAAAAAATTATTTG
Found at i:46372009 original size:18 final size:18
Alignment explanation
Indices: 46371968--46372038 Score: 65
Period size: 18 Copynumber: 3.8 Consensus size: 18
46371958 TATATTTGTA
46371968 AAAAAATTCA-AAAATTATT
1 AAAAAATT-ATAAAA-TATT
46371987 -AAAAATTATAAAATATT
1 AAAAAATTATAAAATATT
*
46372004 AAAAAATAATTGTAAAATATT
1 --AAAA-AATTATAAAATATT
*
46372025 AAAAAATAATAAAA
1 AAAAAATTATAAAA
46372039 ATACTTAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
17 5 0.11
18 19 0.43
19 4 0.09
20 3 0.07
21 13 0.30
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (18 bp):
AAAAAATTATAAAATATT
Found at i:46372019 original size:21 final size:21
Alignment explanation
Indices: 46371990--46372046 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
46371980 AATTATTAAA
46371990 AATTATAAAATATTAAAAAAT
1 AATTATAAAATATTAAAAAAT
*
46372011 AATTGTAAAATATTAAAAAAT
1 AATTATAAAATATTAAAAAAT
46372032 AA-TA-AAAATACTTAA
1 AATTATAAAATA-TTAA
46372047 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 6 0.18
20 5 0.15
21 22 0.67
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (21 bp):
AATTATAAAATATTAAAAAAT
Found at i:46373263 original size:17 final size:18
Alignment explanation
Indices: 46373228--46373265 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
46373218 TTACTATTTA
46373228 TTTTTAAAAATTATAATT
1 TTTTTAAAAATTATAATT
* *
46373246 TTTTTAATAA-TATTATT
1 TTTTTAAAAATTATAATT
46373263 TTT
1 TTT
46373266 AAAATTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTAAAAATTATAATT
Found at i:46373472 original size:11 final size:12
Alignment explanation
Indices: 46373451--46373476 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46373441 AGTGGCTGTC
46373451 TTTTTCTTTTTT
1 TTTTTCTTTTTT
46373463 TTTTTCTTTTTT
1 TTTTTCTTTTTT
46373475 TT
1 TT
46373477 ATCATTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:46374048 original size:8 final size:7
Alignment explanation
Indices: 46374021--46374055 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
46374011 CAAAATGGAC
*
46374021 TTTAAGG
1 TTTAGGG
46374028 TTTAGGG
1 TTTAGGG
46374035 TTTAGGG
1 TTTAGGG
46374042 TTTTAGGG
1 -TTTAGGG
46374050 TTTAGG
1 TTTAGG
46374056 ATTTTAGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:46374048 original size:15 final size:15
Alignment explanation
Indices: 46374028--46374062 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
46374018 GACTTTAAGG
*
46374028 TTTAGGGTTTAGGGT
1 TTTAGGGTTTAGGAT
46374043 TTTAGGGTTTAGGAT
1 TTTAGGGTTTAGGAT
46374058 TTTAG
1 TTTAG
46374063 CTAACATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.34, T:0.49
Consensus pattern (15 bp):
TTTAGGGTTTAGGAT
Found at i:46377945 original size:74 final size:74
Alignment explanation
Indices: 46377820--46377969 Score: 264
Period size: 74 Copynumber: 2.0 Consensus size: 74
46377810 TTTTTAGGGA
**
46377820 GAAAGATTACTTTCAATGCTATACTAAACATAATTACGATACTCTGTAAAACTAAAAGTCCTTTC
1 GAAAGATTACTTTCAATGCTATACTAAACATAATTACGATACTCTAAAAAACTAAAAGTCCTTTC
46377885 CAATTGATG
66 CAATTGATG
* *
46377894 GAAAGATTACTTTCAATGCTATACTGAACATAATTATGATACTCTAAAAAACTAAAAGTCCTTTC
1 GAAAGATTACTTTCAATGCTATACTAAACATAATTACGATACTCTAAAAAACTAAAAGTCCTTTC
46377959 CAATTGATG
66 CAATTGATG
46377968 GA
1 GA
46377970 CCTGGAAAAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (74 bp):
GAAAGATTACTTTCAATGCTATACTAAACATAATTACGATACTCTAAAAAACTAAAAGTCCTTTC
CAATTGATG
Found at i:46379858 original size:28 final size:29
Alignment explanation
Indices: 46379822--46379886 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
46379812 AAGGTGATTT
* * *
46379822 TTGACAAAATTGTCAATT-AGGGATTAAA
1 TTGAGAAAAGTGTAAATTGAGGGATTAAA
*
46379850 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAGTGTAAATTGAGGGATTAAA
*
46379879 TTGTGAAA
1 TTGAGAAA
46379887 TAAATGAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.31
Consensus pattern (29 bp):
TTGAGAAAAGTGTAAATTGAGGGATTAAA
Found at i:46380445 original size:43 final size:42
Alignment explanation
Indices: 46380370--46380535 Score: 133
Period size: 42 Copynumber: 3.8 Consensus size: 42
46380360 TTGTAATTAC
*
46380370 ATGTAAGACCATGTCTAGGAGATTGGCATTGGCATTGTATTGTGATT
1 ATGTAAGACCATGTCTAGGAGATTGGCATT-G---TATA-TGTGATT
*
46380417 ATGTGTAAGACCATGTCTAGGAGATTGGCATCGTATAT-TGATT
1 A--TGTAAGACCATGTCTAGGAGATTGGCATTGTATATGTGATT
* * * * *
46380460 CATGTAAGACCCTGTCTGGGACAGTGGCATTG-ATATGTGATAAC
1 -ATGTAAGACCATGTCTAGGAGATTGGCATTGTATATGTGAT--T
*
46380504 ATGTAAGACCATATCTA--AGATATGGCATTGTA
1 ATGTAAGACCATGTCTAGGAGAT-TGGCATTGTA
46380536 CGAGCTTATG
Statistics
Matches: 98, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
41 6 0.06
42 37 0.38
43 20 0.20
44 2 0.02
45 3 0.03
47 1 0.01
48 1 0.01
49 28 0.29
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (42 bp):
ATGTAAGACCATGTCTAGGAGATTGGCATTGTATATGTGATT
Found at i:46381609 original size:42 final size:42
Alignment explanation
Indices: 46381542--46381677 Score: 200
Period size: 42 Copynumber: 3.2 Consensus size: 42
46381532 GCCCTTTTTT
* * *
46381542 CACACAGCTTGTGACACGGGTGTGTCTGGTAGCCATGTGAGG
1 CACACAGCCTGTGACACGGGCGTGTCTGGTAGCCGTGTGAGG
*
46381584 CACACAGCCTGTGACATGGGCGTGTCTGGTAGCCGTGTGAGG
1 CACACAGCCTGTGACACGGGCGTGTCTGGTAGCCGTGTGAGG
* * *
46381626 CACACGGCCTGTGACGCGGACGTGTCTGGTAGCCGTGTGAGG
1 CACACAGCCTGTGACACGGGCGTGTCTGGTAGCCGTGTGAGG
*
46381668 CACACGGCCT
1 CACACAGCCT
46381678 ATTCACACCG
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 86 1.00
ACGTcount: A:0.17, C:0.26, G:0.37, T:0.21
Consensus pattern (42 bp):
CACACAGCCTGTGACACGGGCGTGTCTGGTAGCCGTGTGAGG
Found at i:46400300 original size:39 final size:39
Alignment explanation
Indices: 46400252--46400349 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 39
46400242 TTGTGGATAC
* *
46400252 CTGACAGCTTGTGTGAGCAGCCA-TGTAGCAACATCGTGA
1 CTGATAGCTTGTGTGAGCA-ACAGTGTAGCAACATCGTGA
* *
46400291 CTGATAGCTTGTGTGAGCAATAGTGTAGCAACATCTTGA
1 CTGATAGCTTGTGTGAGCAACAGTGTAGCAACATCGTGA
*
46400330 CCGATAGCTTGTGTGAGCAA
1 CTGATAGCTTGTGTGAGCAA
46400350 ACCCGTGAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
38 1 0.02
39 52 0.98
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (39 bp):
CTGATAGCTTGTGTGAGCAACAGTGTAGCAACATCGTGA
Found at i:46402948 original size:30 final size:30
Alignment explanation
Indices: 46402891--46402948 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
46402881 TAGGCACTTC
** *
46402891 CACACGGGTGATCCACATGCCCGTGTGTGA
1 CACACGGGTGATCCACACACCCCTGTGTGA
46402921 CACACGGGTAGA-CCACACACCCCTGTGT
1 CACACGGGT-GATCCACACACCCCTGTGT
46402949 CATGGTCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.17
Consensus pattern (30 bp):
CACACGGGTGATCCACACACCCCTGTGTGA
Found at i:46405319 original size:28 final size:28
Alignment explanation
Indices: 46405279--46405342 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
46405269 TGGAAAGTAG
46405279 TTGGGCCTGATGGGCCATATGAATGCGA
1 TTGGGCCTGATGGGCCATATGAATGCGA
*
46405307 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGCGA
46405335 TTGGGCCT
1 TTGGGCCT
46405343 AAAGGGGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGCGA
Found at i:46405754 original size:53 final size:53
Alignment explanation
Indices: 46405668--46405997 Score: 396
Period size: 53 Copynumber: 6.2 Consensus size: 53
46405658 GAAATTACTA
* * * *
46405668 AAATACCCGT-GATTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATTGTCG
1 AAATACCC-TCGA-TTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
* * *
46405722 AAATACCCTCGATTGTGAAATTACTAAAATACCCTCAATTTGTAAAATTATCG
1 AAATACCCTCGATTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
* ** *
46405775 AAATACCCTCGATTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTATTG
1 AAATACCCTCGATTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
* * *
46405828 AAATACCCCCGATTCGTAAAATTACCAAAATACCCTCGA-TTGTGAAATTA-CTA
1 AAATACCCTCGATT-GTAAAATTACCAAAATACCCTCGATTTGTAAAATTATC-G
* * *
46405881 AAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTGAAATTAACG
1 AAATACCCTCGA-TTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
* * * *
46405935 AAACACCCTCGATTTGTAAAATTACCAAAACACCCCCAATTTGTAAAATTATCG
1 AAATACCCTCGA-TTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
46405989 AAATACCCT
1 AAATACCCT
46405998 TGTAGTGTAA
Statistics
Matches: 242, Mismatches: 28, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
53 142 0.59
54 99 0.41
55 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (53 bp):
AAATACCCTCGATTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCG
Found at i:46405823 original size:80 final size:81
Alignment explanation
Indices: 46405659--46405985 Score: 394
Period size: 80 Copynumber: 4.1 Consensus size: 81
46405649 TAACAAAGAG
* * *
46405659 AAATTACTAAAATACCCGT-GATTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATT-GTCG
1 AAATTACTAAAATACCC-TCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACT-A
* *
46405722 AAATACCCTCGA-TTGTG
64 AAATACCCTCAATTTGTA
* * *
46405739 AAATTACTAAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCGA-TTGTGAAATTACTGAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAA
*
46405803 ATACCCTCGATTTGTA
66 ATACCCTCAATTTGTA
* * * * * * *
46405819 AAATTATTGAAATACCCCCGATTCGTAAAATTACCAAAATACCCTCGA-TTGTGAAATTACTAAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAA
46405883 ATACCCTCAATTTGTA
66 ATACCCTCAATTTGTA
* * * * *
46405899 AAATTACCAAAATACCCTCGATTTGTGAAATTAACGAAACACCCTCGATTTGTAAAATTACCAAA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAA
* *
46405964 ACACCCCCAATTTGTA
66 ATACCCTCAATTTGTA
46405980 AAATTA
1 AAATTA
46405986 TCGAAATACC
Statistics
Matches: 216, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
79 23 0.11
80 159 0.74
81 34 0.16
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (81 bp):
AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTACTAAA
ATACCCTCAATTTGTA
Found at i:46405996 original size:27 final size:27
Alignment explanation
Indices: 46405668--46405997 Score: 359
Period size: 27 Copynumber: 12.3 Consensus size: 27
46405658 GAAATTACTA
46405668 AAATACCCGT-GATTTGTAAAATTATCG
1 AAATACCC-TCGATTTGTAAAATTATCG
* *
46405695 AAATACCCCCGATTTGTAAAATTGTCG
1 AAATACCCTCGATTTGTAAAATTATCG
* *
46405722 AAATACCCTCGA-TTGTGAAATTA-CTA
1 AAATACCCTCGATTTGTAAAATTATC-G
*
46405748 AAATACCCTCAATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
*
46405775 AAATACCCTCGA-TTGTGAAATTA-CTG
1 AAATACCCTCGATTTGTAAAATTATC-G
*
46405801 AAATACCCTCGATTTGTAAAATTATTG
1 AAATACCCTCGATTTGTAAAATTATCG
* * * *
46405828 AAATACCCCCGATTCGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCG
* *
46405855 AAATACCCTCGA-TTGTGAAATTA-CTA
1 AAATACCCTCGATTTGTAAAATTATC-G
* * *
46405881 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCG
* *
46405908 AAATACCCTCGATTTGTGAAATTAACG
1 AAATACCCTCGATTTGTAAAATTATCG
* * *
46405935 AAACACCCTCGATTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTATCG
* * *
46405962 AAACACCCCCAATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
46405989 AAATACCCT
1 AAATACCCT
46405998 TGTAGTGTAA
Statistics
Matches: 256, Mismatches: 37, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
25 3 0.01
26 64 0.25
27 187 0.73
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTATCG
Found at i:46410667 original size:26 final size:26
Alignment explanation
Indices: 46410631--46410684 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
46410621 CAATATTGTG
46410631 TTAGCTTCTATGAAGAGTCATAACAA
1 TTAGCTTCTATGAAGAGTCATAACAA
*
46410657 TTAGCTTCTATGAAGAGTCGTAACAA
1 TTAGCTTCTATGAAGAGTCATAACAA
46410683 TT
1 TT
46410685 TTATTTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (26 bp):
TTAGCTTCTATGAAGAGTCATAACAA
Found at i:46412350 original size:21 final size:22
Alignment explanation
Indices: 46412324--46412369 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
46412314 AATGTAGATT
46412324 AAAAAAT-AGATAAA-AACACTA
1 AAAAAATAAGATAAATAA-ACTA
46412345 AAAAAATAAGATAAATAAACTA
1 AAAAAATAAGATAAATAAACTA
46412367 AAA
1 AAA
46412370 CTTATTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.30
22 14 0.61
23 2 0.09
ACGTcount: A:0.74, C:0.07, G:0.04, T:0.15
Consensus pattern (22 bp):
AAAAAATAAGATAAATAAACTA
Found at i:46427409 original size:40 final size:39
Alignment explanation
Indices: 46427219--46427402 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
46427209 CGAATGATGT
* * * *
46427219 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
46427259 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* * *
46427299 CCAGGCTAAG-CCCGAAGGAATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46427337 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46427378 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
46427403 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46427424 original size:79 final size:79
Alignment explanation
Indices: 46427271--46427435 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
46427261 GGACTAAGAT
* **
46427271 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCGAAGGAATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAA
*
46427336 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
46427350 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCGAAGGAATTGGAACGAGTTA-C
* *
46427413 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
46427429 CCGAAGG
1 CCGAAGG
46427436 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:46435824 original size:11 final size:11
Alignment explanation
Indices: 46435762--46435836 Score: 62
Period size: 11 Copynumber: 6.9 Consensus size: 11
46435752 GATATTCCCT
*
46435762 TCAAAAATCTA
1 TCAAAATTCTA
*
46435773 TCAAATTTC-A
1 TCAAAATTCTA
** * *
46435783 TTGAAATTTTC
1 TCAAAATTCTA
* *
46435794 TCAAAATTTTC
1 TCAAAATTCTA
46435805 TCAAAATTCTA
1 TCAAAATTCTA
46435816 TCAAAATTCTA
1 TCAAAATTCTA
*
46435827 TCAAATTTCT
1 TCAAAATTCT
46435837 TTGTTTAAAA
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
10 6 0.12
11 45 0.88
ACGTcount: A:0.40, C:0.17, G:0.01, T:0.41
Consensus pattern (11 bp):
TCAAAATTCTA
Found at i:46436077 original size:48 final size:47
Alignment explanation
Indices: 46435969--46436079 Score: 154
Period size: 47 Copynumber: 2.3 Consensus size: 47
46435959 AGTGATAATT
*
46435969 TTAAATTTTCAATACTATTCGATATTTTTTAATTTATGCAAATTTAA
1 TTAAAATTTCAATACTATTCGATATTTTTTAATTTATGCAAATTTAA
* *
46436016 TT-AAATTTGCAATACTATTTGATATTTTATTCATTTATGC-AATTATAA
1 TTAAAATTT-CAATACTATTCGATATTTT-TTAATTTATGCAAATT-TAA
46436064 TTAAAATTTCAATACT
1 TTAAAATTTCAATACT
46436080 GATTGACTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
46 5 0.09
47 24 0.42
48 22 0.39
49 6 0.11
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.50
Consensus pattern (47 bp):
TTAAAATTTCAATACTATTCGATATTTTTTAATTTATGCAAATTTAA
Found at i:46436097 original size:48 final size:46
Alignment explanation
Indices: 46435969--46436099 Score: 149
Period size: 48 Copynumber: 2.7 Consensus size: 46
46435959 AGTGATAATT
* * *
46435969 TTAAATTTTCAATACTATTCGATATTTTTTAATTTATGCAAATTTAA
1 TTAAAATTTCAATACTATT-GATTTTTTTTCATTTATGCAAATTTAA
*
46436016 TT-AAATTTGCAATACTATTTGATATTTTATTCATTTATGC-AATTATAA
1 TTAAAATTT-CAATACTA-TTGAT-TTTTTTTCATTTATGCAAATT-TAA
46436064 TTAAAATTTCAATACTGATTGACTTTTTTTTCATTT
1 TTAAAATTTCAATACT-ATTGA-TTTTTTTTCATTT
46436100 TTGATGTTTG
Statistics
Matches: 72, Mismatches: 5, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
46 5 0.07
47 17 0.24
48 42 0.58
49 8 0.11
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (46 bp):
TTAAAATTTCAATACTATTGATTTTTTTTCATTTATGCAAATTTAA
Found at i:46437089 original size:7 final size:7
Alignment explanation
Indices: 46437077--46437109 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
46437067 TAATAAAATG
46437077 GTATTTA
1 GTATTTA
46437084 GTATTTA
1 GTATTTA
46437091 GTATTTA
1 GTATTTA
46437098 GTATTTA
1 GTATTTA
46437105 GTATT
1 GTATT
46437110 ATGTATTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:46437115 original size:7 final size:7
Alignment explanation
Indices: 46437105--46437129 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
46437095 TTAGTATTTA
46437105 GTATTAT
1 GTATTAT
46437112 GTATTAT
1 GTATTAT
46437119 GTATTAT
1 GTATTAT
46437126 GTAT
1 GTAT
46437130 ATAAGTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
GTATTAT
Found at i:46437115 original size:14 final size:14
Alignment explanation
Indices: 46437084--46437129 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
46437074 ATGGTATTTA
46437084 GTATTTAGTATT-T
1 GTATTTAGTATTAT
46437097 AGTATTTAGTATTAT
1 -GTATTTAGTATTAT
46437112 GTA-TTATGTATTAT
1 GTATTTA-GTATTAT
46437126 GTAT
1 GTAT
46437130 ATAAGTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 3 0.10
14 25 0.86
15 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (14 bp):
GTATTTAGTATTAT
Found at i:46441501 original size:126 final size:126
Alignment explanation
Indices: 46441276--46441630 Score: 557
Period size: 126 Copynumber: 2.8 Consensus size: 126
46441266 CAGTAGCCAG
* * *
46441276 AGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTAACAGTGCATCCTGCTTAAAGTGTTTT
1 AGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTT
*
46441341 TGACACTATTTGTTTAGAAACGTCTACTCAGAATTATTTTTCTATGAACTACTGTAACAAA
66 TGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTATGAACTACTGTAACAAA
* *
46441402 AGAGTGTCCACGTGGGATCTTTTTTCAGAAATTTTGTTGACAGTGCATCCTGCTTGAAGCGTTTT
1 AGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTT
* * *
46441467 CGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTATGAACTATTGTAGCAAA
66 TGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTATGAACTACTGTAACAAA
* * *
46441528 AGAGTGTCCACGTGGGAGCTTTTTTTAGAAATTTTGCTGACAGTGCGTCCTGCTTGAAGCATTTT
1 AGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTT
* * * * *
46441593 TTACACTAGTTGTTCAAAAACATCTACTCAAAATTATT
66 TGACACTATTTGTTCAGAAACGTCTACTCAGAATTATT
46441631 CTTGCAGAAA
Statistics
Matches: 209, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 209 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (126 bp):
AGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTT
TGACACTATTTGTTCAGAAACGTCTACTCAGAATTATTTTTCTATGAACTACTGTAACAAA
Found at i:46442244 original size:19 final size:19
Alignment explanation
Indices: 46442174--46442244 Score: 94
Period size: 19 Copynumber: 3.8 Consensus size: 19
46442164 ACCATTATGT
*
46442174 ATCAATTAACCCTAAATTA
1 ATCAATTAACCCTAATTTA
*
46442193 ATCAATTAACCTTAAATTTA
1 ATCAATTAACCCT-AATTTA
46442213 ATCAA-T--CCCTAATTTA
1 ATCAATTAACCCTAATTTA
46442229 ATCAATTAACCCTAAT
1 ATCAATTAACCCTAAT
46442245 ACCCAAAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
16 11 0.24
17 4 0.09
19 20 0.44
20 10 0.22
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (19 bp):
ATCAATTAACCCTAATTTA
Found at i:46442407 original size:32 final size:33
Alignment explanation
Indices: 46442355--46442416 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
46442345 TAAAAAACCC
46442355 TAAATCAATTAAATCCTTAAAAAACCCTAATCA
1 TAAATCAATTAAATCCTTAAAAAACCCTAATCA
* *
46442388 TAAATTAATT-AATCCTTAAAAAATCCTAA
1 TAAATCAATTAAATCCTTAAAAAACCCTAA
46442417 CCTAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 18 0.67
33 9 0.33
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.31
Consensus pattern (33 bp):
TAAATCAATTAAATCCTTAAAAAACCCTAATCA
Found at i:46444923 original size:20 final size:21
Alignment explanation
Indices: 46444880--46444923 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
46444870 ATATGTAAAT
** *
46444880 AATATACTATATAAATGATTA
1 AATATACTATATAAAAAATAA
46444901 AATATAC-ATATAAAAAATAA
1 AATATACTATATAAAAAATAA
46444921 AAT
1 AAT
46444924 TAGGAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (21 bp):
AATATACTATATAAAAAATAA
Found at i:46445112 original size:17 final size:17
Alignment explanation
Indices: 46445092--46445135 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
46445082 ACTCTCAAAG
46445092 AAAAATTAAATTCTAAA
1 AAAAATTAAATTCTAAA
46445109 AAAAATTAAATTCTAAA
1 AAAAATTAAATTCTAAA
*
46445126 TAAAA-TAAAT
1 AAAAATTAAAT
46445136 AAAACTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 5 0.19
17 21 0.81
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAAATTAAATTCTAAA
Found at i:46447253 original size:24 final size:24
Alignment explanation
Indices: 46447226--46447273 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
46447216 TATAATATCA
*
46447226 TATTAGAGTAAATTATAGTTTTAT
1 TATTAGACTAAATTATAGTTTTAT
*
46447250 TATTAGTCTAAATTATAGTTTTAT
1 TATTAGACTAAATTATAGTTTTAT
46447274 ATAAATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.52
Consensus pattern (24 bp):
TATTAGACTAAATTATAGTTTTAT
Found at i:46449978 original size:61 final size:61
Alignment explanation
Indices: 46449883--46450003 Score: 206
Period size: 61 Copynumber: 2.0 Consensus size: 61
46449873 TAATGTGAGG
* * *
46449883 TATCATATCAAATTCTAATTCAAGAGTATTCTTTCACATGAAACCAACCGTGGTGGCTTGT
1 TATCACATCAAATTCTAATTCAAGAGTATTCTTTCACATGAAACCAACCATGGAGGCTTGT
*
46449944 TATCACATCAATTTCTAATTCAAGAGTATTCTTTCACATGAAACCAACCATGGAGGCTTG
1 TATCACATCAAATTCTAATTCAAGAGTATTCTTTCACATGAAACCAACCATGGAGGCTTG
46450004 AAGATTAGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (61 bp):
TATCACATCAAATTCTAATTCAAGAGTATTCTTTCACATGAAACCAACCATGGAGGCTTGT
Found at i:46462709 original size:39 final size:40
Alignment explanation
Indices: 46462595--46462779 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
46462585 GCTACTCGTT
*
46462595 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
46462635 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
46462675 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * * * *
46462714 CAAATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
46462755 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46462780 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46462740 original size:79 final size:81
Alignment explanation
Indices: 46462597--46462779 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
46462587 TACTCGTTCA
* *
46462597 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
46462661 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
***
46462677 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
46462739 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
46462756 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
46462780 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:46463967 original size:56 final size:56
Alignment explanation
Indices: 46463905--46464136 Score: 437
Period size: 56 Copynumber: 4.1 Consensus size: 56
46463895 TATTAGTTTA
46463905 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
46463961 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
46464017 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
46464073 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACATAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
46464129 TTGCCCAT
1 TTGCCCAT
46464137 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:46467840 original size:55 final size:53
Alignment explanation
Indices: 46467708--46467997 Score: 217
Period size: 55 Copynumber: 5.5 Consensus size: 53
46467698 AACTTACCAT
* * * *
46467708 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAATTCATCAA
* * * *
46467761 TGCCATGCCTTGGCATAGTATTACATGGGACCTTTGCCTTATAGTAATTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AATTCATCAA
* * * *
46467816 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTT-ATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA-TTCATCAA
* * * *
46467870 TGCCATGCCTTGGCATGGTCTTACATGATA---T-CCTTAT---CTT-ACCAAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAATTCATC-AA
** **
46467916 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTATCTTATAGAACTT-ATCAA
1 TGCCATG--CCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA-TTCATCAA
*
46467971 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
46467998 ATATCCTTAT
Statistics
Matches: 187, Mismatches: 32, Indels: 35
0.74 0.13 0.14
Matches are distributed among these distances:
45 4 0.02
46 9 0.05
47 16 0.09
48 2 0.01
49 6 0.03
50 1 0.01
51 1 0.01
52 7 0.04
53 36 0.19
54 47 0.25
55 52 0.28
56 6 0.03
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAATTCATCAA
Found at i:46467887 original size:54 final size:54
Alignment explanation
Indices: 46467697--46468011 Score: 276
Period size: 54 Copynumber: 6.0 Consensus size: 54
46467687 TTTCCTTTTT
* * * * * *
46467697 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* * * * * ** *
46467750 GAACTCACCAATGCCATGCCTTGGCATAGTATTACATGGGA-CCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTACCTTATA
* *
46467804 GTAA-TTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATA
1 G-AACTT-ATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* *
46467859 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T-
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* ** * *
46467910 --AC-CA--AATGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTATCTTATA
1 GAACTTATCAATGCCATG--CCTTGACATGGTCTTACATGATATCCTTACCTTATA
* *
46467960 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTA
46468012 CCAAATGCCA
Statistics
Matches: 213, Mismatches: 32, Indels: 33
0.77 0.12 0.12
Matches are distributed among these distances:
46 9 0.04
47 24 0.11
48 4 0.02
49 3 0.01
52 5 0.02
53 46 0.22
54 70 0.33
55 50 0.23
56 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
Found at i:46467938 original size:47 final size:47
Alignment explanation
Indices: 46467883--46468083 Score: 226
Period size: 47 Copynumber: 4.1 Consensus size: 47
46467873 CATGCCTTGG
46467883 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * ***
46467930 CATGGTCTTACATGGTATCCTTATCTTATAGAACTTATCAATGCCATG--CCTTGG
1 CATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATGCCATGTTCC-AAA
46467984 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * *
46468031 CATGGTTTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCGAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
46468078 CATGGT
1 CATGGT
46468084 ATCCTTGTGT
Statistics
Matches: 129, Mismatches: 14, Indels: 22
0.78 0.08 0.13
Matches are distributed among these distances:
46 9 0.07
47 73 0.57
48 4 0.03
49 3 0.02
52 3 0.02
53 4 0.03
54 24 0.19
55 9 0.07
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:46468058 original size:101 final size:101
Alignment explanation
Indices: 46467828--46468058 Score: 417
Period size: 101 Copynumber: 2.3 Consensus size: 101
46467818 CCATGTCTTG
* * *
46467828 ACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTATCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
46467893 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
46467929 ACATGGTCTTACATGGTATCCTTATCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTATCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
46467994 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* *
46468030 ACATGGTTTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTATCTTA
46468059 CCAAATGCCA
Statistics
Matches: 125, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 125 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (101 bp):
ACATGGTCTTACATGGTATCCTTATCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:46468211 original size:44 final size:44
Alignment explanation
Indices: 46468144--46468228 Score: 143
Period size: 44 Copynumber: 1.9 Consensus size: 44
46468134 CCTTAATCAA
*
46468144 TACCGATGCCATGTATTGACATGGTCTTACATGGGATCCTTGCT
1 TACCAATGCCATGTATTGACATGGTCTTACATGGGATCCTTGCT
* *
46468188 TACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 TACCAATGCCATGTATTGACATGGTCTTACATGGGATCCTT
46468229 AACCGTCAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (44 bp):
TACCAATGCCATGTATTGACATGGTCTTACATGGGATCCTTGCT
Found at i:46468553 original size:29 final size:29
Alignment explanation
Indices: 46468511--46468566 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
46468501 TATGTTAGTC
46468511 GATACTTCCTTGTTATCATACAAAGCCTT
1 GATACTTCCTTGTTATCATACAAAGCCTT
46468540 GATACTTCCTTGTTATCATACAAAGCC
1 GATACTTCCTTGTTATCATACAAAGCC
46468567 ATAATACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.36
Consensus pattern (29 bp):
GATACTTCCTTGTTATCATACAAAGCCTT
Found at i:46468573 original size:29 final size:29
Alignment explanation
Indices: 46468512--46468573 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
46468502 ATGTTAGTCG
* *
46468512 ATACTTCCTTGTTATCATACAAAGCCTTG
1 ATACTTCCTTGTTATCATACAAAGCCATA
46468541 ATACTTCCTTGTTATCATACAAAGCCATA
1 ATACTTCCTTGTTATCATACAAAGCCATA
46468570 ATAC
1 ATAC
46468574 AAAATATGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.35
Consensus pattern (29 bp):
ATACTTCCTTGTTATCATACAAAGCCATA
Found at i:46469393 original size:12 final size:12
Alignment explanation
Indices: 46469376--46469400 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46469366 TAGACACACG
46469376 CCTGTGTGTCTA
1 CCTGTGTGTCTA
46469388 CCTGTGTGTCTA
1 CCTGTGTGTCTA
46469400 C
1 C
46469401 ACGGTGCTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.24, T:0.40
Consensus pattern (12 bp):
CCTGTGTGTCTA
Found at i:46476406 original size:41 final size:41
Alignment explanation
Indices: 46476360--46476447 Score: 104
Period size: 41 Copynumber: 2.1 Consensus size: 41
46476350 AGCCATGGTC
* * * * *
46476360 GTGTGAGACACACAACTTGTCACATGGGTGTGTGTGAGGTT
1 GTGTGACACACACAACCTATCACATGGGCGTGTGTGAGATT
* *
46476401 GTGTGACCCACACGACCTATCACATGGGCGTGTGTGAGATT
1 GTGTGACACACACAACCTATCACATGGGCGTGTGTGAGATT
*
46476442 ATGTGA
1 GTGTGA
46476448 TCCGCATATC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (41 bp):
GTGTGACACACACAACCTATCACATGGGCGTGTGTGAGATT
Found at i:46477359 original size:15 final size:15
Alignment explanation
Indices: 46477341--46477383 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
46477331 CTATTATTCA
46477341 TATTATTATT-GTTGT
1 TATTATTATTAG-TGT
46477356 TATTATTATTAGTGT
1 TATTATTATTAGTGT
* *
46477371 TAATATTAGTAGT
1 TATTATTATTAGT
46477384 CTATTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 24 0.96
16 1 0.04
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (15 bp):
TATTATTATTAGTGT
Found at i:46482849 original size:38 final size:38
Alignment explanation
Indices: 46482807--46482883 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
46482797 TATGTTAATT
46482807 TAGCAACTGATTGATTTTCTAGATTGGTAACTTATCAA
1 TAGCAACTGATTGATTTTCTAGATTGGTAACTTATCAA
46482845 TAGCAACTGATTGATTTTCTAGATTGGTAACTTATCAA
1 TAGCAACTGATTGATTTTCTAGATTGGTAACTTATCAA
46482883 T
1 T
46482884 TCGATCTCGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (38 bp):
TAGCAACTGATTGATTTTCTAGATTGGTAACTTATCAA
Found at i:46487443 original size:55 final size:53
Alignment explanation
Indices: 46487372--46487626 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 53
46487362 ATTAGGGTTT
* * *
46487372 AAGGATACCGTGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
46487427 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * *
46487482 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* *
46487535 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * * *
46487584 AAGGATACCACGTAAAACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
46487627 GTACCCGCGT
Statistics
Matches: 169, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 42 0.25
54 11 0.07
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:46487553 original size:108 final size:110
Alignment explanation
Indices: 46487382--46487579 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
46487372 AAGGATACCG
*
46487382 TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
46487447 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* * *
46487492 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
46487554 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
46487580 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 23 0.28
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:46487829 original size:16 final size:16
Alignment explanation
Indices: 46487808--46487838 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46487798 ATAAATTTGA
46487808 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
46487824 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
46487839 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:46492433 original size:26 final size:26
Alignment explanation
Indices: 46492397--46492448 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
46492387 AAAATGATAA
46492397 CTTATTCGAAAGATCTTACAGGAAGC
1 CTTATTCGAAAGATCTTACAGGAAGC
46492423 CTTATTCGAAAGATCTTACAGGAAGC
1 CTTATTCGAAAGATCTTACAGGAAGC
46492449 ACATAGTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (26 bp):
CTTATTCGAAAGATCTTACAGGAAGC
Found at i:46498683 original size:18 final size:18
Alignment explanation
Indices: 46498646--46498683 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
46498636 TTGTAACACT
*
46498646 GGTTGAACGAGCTTGCAA
1 GGTTGAACGAGCTTGAAA
46498664 GGTTGAA-GAGCTTGGAAA
1 GGTTGAACGAGCTT-GAAA
46498682 GG
1 GG
46498684 AGAAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.29, C:0.11, G:0.39, T:0.21
Consensus pattern (18 bp):
GGTTGAACGAGCTTGAAA
Found at i:46509311 original size:10 final size:10
Alignment explanation
Indices: 46509285--46509314 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
46509275 TGATTAAGGT
46509285 ATGATTTTTG
1 ATGATTTTTG
46509295 ATCGATTTTTG
1 AT-GATTTTTG
46509306 ATGATTTTT
1 ATGATTTTT
46509315 ACGTTTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.20, C:0.03, G:0.17, T:0.60
Consensus pattern (10 bp):
ATGATTTTTG
Found at i:46509311 original size:21 final size:18
Alignment explanation
Indices: 46509285--46509333 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 18
46509275 TGATTAAGGT
46509285 ATGATTTTTGATCGATTTTTG
1 ATGATTTTT-A-CG-TTTTTG
46509306 ATGATTTTTACGTTTTTG
1 ATGATTTTTACGTTTTTG
*
46509324 -TGATTGTTAC
1 ATGATTTTTAC
46509334 TTCGTTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 9 0.33
18 6 0.22
19 2 0.07
20 1 0.04
21 9 0.33
ACGTcount: A:0.18, C:0.06, G:0.18, T:0.57
Consensus pattern (18 bp):
ATGATTTTTACGTTTTTG
Found at i:46510075 original size:43 final size:42
Alignment explanation
Indices: 46510027--46510193 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 42
46510017 ATCTTGATGT
46510027 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
* *
46510069 AGATTACATGTAAGACCATGTTTGGGACATTGGCATCGTTAATT-
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-T-ATTG
* * * * * **
46510113 GATTTCGTGTAAGACCTTGTTTGGGACAATGGCA-TCAATATG
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TG
* * *
46510155 TGATTACATGTAAGACCATATCTAGGATA-TGGCATTGTA
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
46510194 CAACTTATAT
Statistics
Matches: 100, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 5 0.05
43 88 0.88
44 1 0.01
45 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
Found at i:46513412 original size:42 final size:42
Alignment explanation
Indices: 46513346--46513495 Score: 194
Period size: 42 Copynumber: 3.5 Consensus size: 42
46513336 ACTACATGTG
* *
46513346 AGACCATATCTGGGATGTGCCATCAATATGAGACTTTGTGTA
1 AGACCATATCTGGGATATGGCATCAATATGAGACTTTGTGTA
46513388 AGACCATATCTGGGATATGGCATCAATATGAGACTTTGTGTA
1 AGACCATATCTGGGATATGGCATCAATATGAGACTTTGTGTA
* * ** * **
46513430 AGACCATAGCTGGGTTATTGGCATCGGTACGAGA-TTACATGTA
1 AGACCATATCTGGGATA-TGGCATCAATATGAGACTT-TGTGTA
46513473 AGACCATATCTGGGATATGGCAT
1 AGACCATATCTGGGATATGGCAT
46513496 TGGTACGGTA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
42 63 0.66
43 32 0.34
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
AGACCATATCTGGGATATGGCATCAATATGAGACTTTGTGTA
Found at i:46515198 original size:46 final size:47
Alignment explanation
Indices: 46515092--46515213 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 47
46515082 TGTCTTCGAC
** * *
46515092 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
*
46515142 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
46515188 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
46515214 CTGTCCTGAC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 35 0.53
50 31 0.47
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:46522748 original size:43 final size:42
Alignment explanation
Indices: 46522698--46522816 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 42
46522688 ATATGTGTTC
46522698 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT-ATGTGAT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATAAT-TGAT
* * * *
46522740 TACGTGTAAGACCATGTCTAGGACATCGGCATCG-TAATTGAT
1 T-CGTGTAAGACCACGTCTGGGACGTTGGCATCGATAATTGAT
*
46522782 TTGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGAT
1 TCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT
46522817 TTATCGATAT
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
41 25 0.40
42 8 0.13
43 30 0.48
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATAATTGAT
Found at i:46533293 original size:48 final size:48
Alignment explanation
Indices: 46533218--46533363 Score: 211
Period size: 48 Copynumber: 3.0 Consensus size: 48
46533208 TGTTACATGT
*
46533218 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
* * * *
46533266 GATTCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCGACATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
* * * *
46533314 GATCCCATGTAAGACCATATCAGGGATATGGTATTGGCATCGATATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
46533362 GA
1 GA
46533364 CATCATGAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
Found at i:46533376 original size:48 final size:47
Alignment explanation
Indices: 46533223--46533380 Score: 181
Period size: 48 Copynumber: 3.3 Consensus size: 47
46533213 CATGTGATCC
* * *
46533223 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGAGATT
1 CATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGACT
* * * * *
46533270 CCATGTAAGACCATGTCTGGGACATGGCATTGGTATCGACATGTGATCC
1 -CATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGA-CT
* * *
46533319 CATGTAAGACCATATCAGGGATATGGTATTGGCATCGATATGAGACAT
1 CATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGAC-T
*
46533367 CATGAAAGACCATA
1 CATGTAAGACCATA
46533381 GCTAGGCTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
47 1 0.01
48 92 0.99
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (47 bp):
CATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGACT
Found at i:46549436 original size:24 final size:24
Alignment explanation
Indices: 46549402--46549478 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
46549392 AAAGACTGTC
46549402 AGGAGAAGATTTAGGAGCTAATAA
1 AGGAGAAGATTTAGGAGCTAATAA
* * *
46549426 GGGAGAGGATTTAGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTAATAA
* *
46549450 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTAATAA
46549474 AGGAG
1 AGGAG
46549479 CAGGAGTTGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.39, C:0.05, G:0.36, T:0.19
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTAATAA
Found at i:46551174 original size:33 final size:34
Alignment explanation
Indices: 46551097--46551177 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
46551087 TATGGGCCGT
*
46551097 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * ** *
46551131 AATGTAATCTGAA-AA-GGGCTGTGGCGCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
46551164 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
46551178 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:46559011 original size:25 final size:25
Alignment explanation
Indices: 46558983--46559061 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
46558973 CTAATGGCCG
46558983 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
46559008 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
46559030 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
46559055 ATGTGAT
1 ATGTGAT
46559062 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:46559033 original size:47 final size:47
Alignment explanation
Indices: 46558967--46559344 Score: 643
Period size: 47 Copynumber: 8.1 Consensus size: 47
46558957 GAAATGATAG
46558967 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46559014 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
46559061 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
46559108 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
46559155 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46559202 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46559249 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * *
46559296 -CGGGCCGAGTGGCCAACGTGATG-ATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46559341 TAAG
1 TAAG
46559345 TCCCGAAGGG
Statistics
Matches: 314, Mismatches: 16, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
45 20 0.06
46 18 0.06
47 276 0.88
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:46559518 original size:36 final size:37
Alignment explanation
Indices: 46559463--46559540 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
46559453 CCGAGCTCTA
* *
46559463 AAGACCCGATGACTACGTGTGG-GAATT-TTTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
46559499 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46559536 AAGAC
1 AAGAC
46559541 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 23 0.62
37 14 0.38
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46561438 original size:43 final size:43
Alignment explanation
Indices: 46561390--46561492 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
46561380 TTGGTTTTCA
46561390 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46561433 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
46561476 GCACTAAGTGTACGGGC
1 GCACTAAGTGTGCGGGC
46561493 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:46561545 original size:29 final size:29
Alignment explanation
Indices: 46561474--46561547 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
46561464 GTTGTGAGAT
* * *
46561474 TGGCACTAAGTGTACGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATACA
*
46561503 TGGCACTAAGTGTGCGAG-TTTAAAGTACA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TACA
46561532 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46561548 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATACA
Found at i:46561981 original size:40 final size:40
Alignment explanation
Indices: 46561858--46562053 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
46561848 TCGAATGATG
** *
46561858 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
46561898 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
46561938 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
46561978 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
46562018 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
46562054 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:46561994 original size:80 final size:81
Alignment explanation
Indices: 46561858--46562054 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
46561848 TCGAATGATG
**
46561858 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
46561920 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
46561938 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
46562002 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
46562018 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
46562055 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:46570293 original size:39 final size:40
Alignment explanation
Indices: 46570188--46570340 Score: 188
Period size: 40 Copynumber: 3.9 Consensus size: 40
46570178 AATGATGTCA
* *
46570188 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
* *
46570228 GGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
46570268 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
46570307 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
46570341 GTAACACCCC
Statistics
Matches: 98, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
39 34 0.35
40 54 0.55
41 10 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:46570324 original size:79 final size:80
Alignment explanation
Indices: 46570188--46570340 Score: 204
Period size: 79 Copynumber: 1.9 Consensus size: 80
46570178 AATGATGTCA
* *
46570188 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCAAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATTTGTG
46570253 CGAGTTACTAATTCC
66 CGAGTTACTAATTCC
* * ** *
46570268 GGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCAAAGGCATTTG
46570330 TGCGAGTTACT
64 TGCGAGTTACT
46570341 GTAACACCCC
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.02
79 49 0.77
80 14 0.22
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCAAAGGCATTTGTG
CGAGTTACTAATTCC
Found at i:46571742 original size:40 final size:40
Alignment explanation
Indices: 46571705--46571929 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
46571695 GCTACTCGTT
* *
46571705 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
46571745 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
46571785 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
46571825 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
46571864 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
46571905 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
46571930 CATCATTCGA
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 118 0.72
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:46571913 original size:119 final size:120
Alignment explanation
Indices: 46571707--46571929 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
46571697 TACTCGTTCA
*
46571707 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
46571772 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
46571827 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
46571889 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
46571930 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:46573122 original size:56 final size:56
Alignment explanation
Indices: 46573055--46573174 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
46573045 TATTAGTTTA
46573055 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
46573111 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
46573167 TTGCCCAT
1 TTGCCCAT
46573175 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:46579656 original size:11 final size:11
Alignment explanation
Indices: 46579640--46579669 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
46579630 TCTCCACTTG
46579640 TTTCTTTTATT
1 TTTCTTTTATT
46579651 TTTCTTTTATT
1 TTTCTTTTATT
*
46579662 TTCCTTTT
1 TTTCTTTT
46579670 CTAAACACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTCTTTTATT
Done.