Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 146 of 349
Found at i:46582797 original size:15 final size:16
Alignment explanation
Indices: 46582779--46582808 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46582769 ATGGAAACTA
46582779 TGATAT-ATGAAATAT
1 TGATATAATGAAATAT
46582794 TGATATAATGAAATA
1 TGATATAATGAAATA
46582809 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (16 bp):
TGATATAATGAAATAT
Found at i:46587843 original size:54 final size:54
Alignment explanation
Indices: 46587785--46587927 Score: 196
Period size: 54 Copynumber: 2.6 Consensus size: 54
46587775 CGATTTACAA
* **
46587785 AATTATTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCAGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCAGTAGGGTAG
* *
46587839 AATTATCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCAGTAGGGTAG
* * * * *
46587893 AATTATCGAGATACCATTATGGGGTAAAATTACCA
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCA
46587928 TTTTGCCCCT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 78 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCAGTAGGGTAG
Found at i:46587918 original size:27 final size:27
Alignment explanation
Indices: 46587785--46587907 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
46587775 CGATTTACAA
*
46587785 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
**
46587812 AATTA-CTGAAATACCCCAGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
46587839 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * * *
46587866 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
46587893 AATTATCGAGATACC
1 AATTATCGAAATACC
46587908 ATTATGGGGT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
27 80 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTATCGAAATACCCTTGTAGGGTAG
Found at i:46588196 original size:25 final size:25
Alignment explanation
Indices: 46588129--46588198 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
46588119 AGAAAGTGCT
* * *
46588129 AAAAGGGCTATGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
46588154 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
46588179 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
46588199 ATTAAACGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:46588467 original size:31 final size:31
Alignment explanation
Indices: 46588418--46588500 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
46588408 CGCTTACAGT
46588418 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46588448 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46588479 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
46588501 TCGAGACTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:46590521 original size:46 final size:45
Alignment explanation
Indices: 46590471--46590646 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
46590461 TGGTTGAGCA
*
46590471 TCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
46590517 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
46590564 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
46590610 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46590647 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 66 0.60
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:46590627 original size:93 final size:93
Alignment explanation
Indices: 46590468--46590638 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
46590458 GGATGGTTGA
*
46590468 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
46590533 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
46590561 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
46590625 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
46590639 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:46593643 original size:27 final size:27
Alignment explanation
Indices: 46593578--46593652 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
46593568 ATTACTGAAA
* *
46593578 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTGCAAAATTACCAAAG
* ***
46593605 TACCC-CTAATTTGCAAAATTACCATTT
1 TACCCTC-GATTTGCAAAATTACCAAAG
*
46593632 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTGCAAAATTA
46593653 TTGAAATACC
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 1 0.03
27 36 0.95
28 1 0.03
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTGCAAAATTACCAAAG
Found at i:46593706 original size:54 final size:54
Alignment explanation
Indices: 46593648--46593770 Score: 165
Period size: 54 Copynumber: 2.3 Consensus size: 54
46593638 CGATTTACAA
* * *
46593648 AATTATTGAAATACCCTTGTACGATAGAATTACTAAAATACCCCAGTAGGGTAG
1 AATTATCGAAATACCCTTGTACGATAGAAATACCAAAATACCCCAGTAGGGTAG
* * * *
46593702 AATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTACGATAGAAATACCAAAATACCCCAGTAGGGTAG
* *
46593756 AATTACCGAGATACC
1 AATTATCGAAATACC
46593771 ATTATGGGGT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (54 bp):
AATTATCGAAATACCCTTGTACGATAGAAATACCAAAATACCCCAGTAGGGTAG
Found at i:46593780 original size:27 final size:27
Alignment explanation
Indices: 46593655--46593789 Score: 144
Period size: 27 Copynumber: 5.0 Consensus size: 27
46593645 CAAAATTATT
* * *
46593655 GAAATACCCTTGTACGATAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* ** *
46593682 AAAATACCCCAGTAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
46593709 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
46593736 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * * * *
46593763 GAGATACCATTATGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
46593790 ATTTTGCCCT
Statistics
Matches: 88, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:46594059 original size:25 final size:25
Alignment explanation
Indices: 46593992--46594061 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
46593982 AGGAAGTGCT
* * *
46593992 AAAAGGGCTATGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
46594017 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
46594042 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
46594062 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:46594074 original size:24 final size:25
Alignment explanation
Indices: 46593992--46594074 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
46593982 AGGAAGTGCT
* * *
46593992 AAAAG-GGCTATGCCCCAATTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
46594016 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
*
46594041 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
46594065 AAAAGAGGCT
1 AAAAGAGGCT
46594075 AGGCCTTCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
24 16 0.31
25 35 0.69
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:46594330 original size:31 final size:31
Alignment explanation
Indices: 46594281--46594363 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
46594271 CGCTTACAGT
*
46594281 AAAGGCTTTGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46594311 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46594342 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
46594364 TCGAGACTGA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 15 0.29
31 36 0.71
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:46594411 original size:29 final size:28
Alignment explanation
Indices: 46594377--46594431 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
46594367 AGACTGAATT
* *
46594377 AGGGCTTAGGCCCATACTACTACTGTTTA
1 AGGGCTAAGGCCCAGACTA-TACTGTTTA
46594406 AGGGCTAAGGCCCAGACTATACTGTT
1 AGGGCTAAGGCCCAGACTATACTGTT
46594432 ACTCAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (28 bp):
AGGGCTAAGGCCCAGACTATACTGTTTA
Found at i:46596687 original size:20 final size:21
Alignment explanation
Indices: 46596648--46596687 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
46596638 GTCGAGTTGG
46596648 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTGTTGCCCTT
46596669 CCACACG-GACGTG-TGCCCT
1 CCACACGAG-CGTGTTGCCCT
46596688 ATTTTAAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACGAGCGTGTTGCCCTT
Found at i:46598242 original size:48 final size:47
Alignment explanation
Indices: 46598190--46598369 Score: 227
Period size: 48 Copynumber: 3.8 Consensus size: 47
46598180 GCACACTAAG
* * *
46598190 TGCTAATATCATGGTGC-GAAGCCAACTCAATGTATCTCGCACTCGAAA
1 TGCTAATATCATGG-CCTGAAGCCAAATCAATGTATCTCACAC-CGAAA
*
46598238 TGCTAATATCATGGCCTGAAGCCAAATCAATGTATCTCACACCCAAA
1 TGCTAATATCATGGCCTGAAGCCAAATCAATGTATCTCACACCGAAA
* *
46598285 GTGCTAATATCATGGCCTGAAGCCAAATCAATGAATCTCACACCCGAAG
1 -TGCTAATATCATGGCCTGAAGCCAAATCAATGTATCTCACA-CCGAAA
** * *
46598334 TGCCGATATCATGGCCCGAAGCTAAATCAATGTATC
1 TGCTAATATCATGGCCTGAAGCCAAATCAATGTATC
46598370 CCCTAATAAC
Statistics
Matches: 117, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
47 5 0.04
48 108 0.92
49 4 0.03
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (47 bp):
TGCTAATATCATGGCCTGAAGCCAAATCAATGTATCTCACACCGAAA
Found at i:46598355 original size:96 final size:96
Alignment explanation
Indices: 46598187--46598369 Score: 260
Period size: 96 Copynumber: 1.9 Consensus size: 96
46598177 CTCGCACACT
* * * * * *
46598187 AAGTGCTAATATCATGGTGCGAAGCCAACTCAATGTATCTCGCACTCGAAATGCTAATATCATGG
1 AAGTGCTAATATCATGGTCCGAAGCCAAATCAATGAATCTCACACCCGAAATGCCAATATCATGG
*
46598252 CCTGAAGCCAAATCAATGTATCTCACACCCA
66 CCCGAAGCCAAATCAATGTATCTCACACCCA
* *
46598283 AAGTGCTAATATCATGG-CCTGAAGCCAAATCAATGAATCTCACACCCGAAGTGCCGATATCATG
1 AAGTGCTAATATCATGGTCC-GAAGCCAAATCAATGAATCTCACACCCGAAATGCCAATATCATG
*
46598347 GCCCGAAGCTAAATCAATGTATC
65 GCCCGAAGCCAAATCAATGTATC
46598370 CCCTAATAAC
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
95 1 0.01
96 75 0.99
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (96 bp):
AAGTGCTAATATCATGGTCCGAAGCCAAATCAATGAATCTCACACCCGAAATGCCAATATCATGG
CCCGAAGCCAAATCAATGTATCTCACACCCA
Found at i:46598955 original size:21 final size:20
Alignment explanation
Indices: 46598927--46598965 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
46598917 CAAAACTTGT
46598927 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
46598947 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
46598966 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:46607178 original size:38 final size:38
Alignment explanation
Indices: 46607107--46607293 Score: 207
Period size: 38 Copynumber: 4.8 Consensus size: 38
46607097 ATTTGATGTG
* *
46607107 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
*
46607147 TATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* *
46607185 TATCCGGGTTAAATCCCGCAGGCTTCGTACTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* *
46607223 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * * *
46607261 TATCCGAGTTTAAAGTCCCACAGGTTTTGTGCT
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCT
46607294 AGTGACTGGA
Statistics
Matches: 130, Mismatches: 12, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
37 2 0.02
38 92 0.71
39 13 0.10
40 23 0.18
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:46607206 original size:76 final size:77
Alignment explanation
Indices: 46607107--46607284 Score: 234
Period size: 76 Copynumber: 2.3 Consensus size: 77
46607097 ATTTGATGTG
* *
46607107 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGCAAGCT
1 TATCCGGG-TTAAAGTCCCGCAGGCT-TCATACTGGAATTATATCCGGGTTAAATCCCGCAAGCT
*
46607171 TCGTGCTGGTAATA
64 TAGTGCTGGTAATA
* * *
46607185 TATCCGGGTTAAA-TCCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAATCCCGCAGGCTTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTCATACTGGAATTATATCCGGGTTAAATCCCGCAAGCTTA
*
46607249 GTGCTGGTATTA
66 GTGCTGGTAATA
* *
46607261 TATCCGAGTTTAAAGTCCCACAGG
1 TATCCG-GGTTAAAGTCCCGCAGG
46607285 TTTTGTGCTA
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
75 1 0.01
76 60 0.68
77 11 0.12
78 16 0.18
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (77 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTCATACTGGAATTATATCCGGGTTAAATCCCGCAAGCTTA
GTGCTGGTAATA
Found at i:46615139 original size:38 final size:37
Alignment explanation
Indices: 46615092--46615233 Score: 151
Period size: 38 Copynumber: 3.7 Consensus size: 37
46615082 AGCTTAAAGA
*
46615092 CCCGCAGGCTATATGCTGGAATTATATCTGGGTTAAAT
1 CCCGCAGGCT-TATGCTGGAATTATATCAGGGTTAAAT
* * ** *
46615130 CCCGTAGGCTTCGTATTGGTAA-TATATCCGGGTTAAAT
1 CCCGCAGGCTT-ATGCTGG-AATTATATCAGGGTTAAAT
* *
46615168 CCCGCAGGCTTCGTGCTGGTATTATATCAGGGTTAAAT
1 CCCGCAGGCTT-ATGCTGGAATTATATCAGGGTTAAAT
*
46615206 CCCGCAGGCTTAGTGCTGGTATTATATC
1 CCCGCAGGCTTA-TGCTGGAATTATATC
46615234 CGAGCTTAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
37 2 0.02
38 85 0.96
39 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (37 bp):
CCCGCAGGCTTATGCTGGAATTATATCAGGGTTAAAT
Found at i:46615185 original size:76 final size:76
Alignment explanation
Indices: 46615092--46615235 Score: 200
Period size: 76 Copynumber: 1.9 Consensus size: 76
46615082 AGCTTAAAGA
* * * *
46615092 CCCGCAGGCTATATGCTGGAATTATATCTGGGTTAAATCCCGTAGGCTTCGTATTGGTAATATAT
1 CCCGCAGGCTATATGCTGGAATTATATCAGGGTTAAATCCCGCAGGCTTAGTACTGGTAATATAT
46615157 CCGGGTTAAAT
66 CCGGGTTAAAT
* * * *
46615168 CCCGCAGGCT-TCGTGCTGGTATTATATCAGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTATA
1 CCCGCAGGCTAT-ATGCTGGAATTATATCAGGGTTAAATCCCGCAGGCTTAGTACTGGTAATATA
46615232 TCCG
65 TCCG
46615236 AGCTTAAAGT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
75 1 0.02
76 58 0.98
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (76 bp):
CCCGCAGGCTATATGCTGGAATTATATCAGGGTTAAATCCCGCAGGCTTAGTACTGGTAATATAT
CCGGGTTAAAT
Found at i:46617134 original size:48 final size:48
Alignment explanation
Indices: 46617081--46617275 Score: 174
Period size: 48 Copynumber: 3.8 Consensus size: 48
46617071 CTCTCACACT
* * *
46617081 AAGTGCTAATATCATGGCCCGAAGCCAACTCAATGTATCTCGCACCTG
1 AAGTGCTAATATCATGGCCTGAAGCCAAATCAATGTATCTCGCACCCG
46617129 AAGTGCTAATATCACGGCCAATATCATGGCCTGAAGCCAAATCAATGTATCTCGCACCCG
1 AAGTGC-----T-A------ATATCATGGCCTGAAGCCAAATCAATGTATCTCGCACCCG
* * * * * *
46617189 AAGTGCTAATATTATGGCCTGAAGCCATATCAATGAAACTCACACCCA
1 AAGTGCTAATATCATGGCCTGAAGCCAAATCAATGTATCTCGCACCCG
** *
46617237 AAGTGCCGATATCATGGCCTGAAGCTAAATCAATGTATC
1 AAGTGCTAATATCATGGCCTGAAGCCAAATCAATGTATC
46617276 CCTTAATGAC
Statistics
Matches: 119, Mismatches: 16, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
48 72 0.61
53 1 0.01
54 2 0.02
55 1 0.01
60 43 0.36
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (48 bp):
AAGTGCTAATATCATGGCCTGAAGCCAAATCAATGTATCTCGCACCCG
Found at i:46617181 original size:60 final size:60
Alignment explanation
Indices: 46617088--46617200 Score: 199
Period size: 60 Copynumber: 1.9 Consensus size: 60
46617078 ACTAAGTGCT
* *
46617088 AATATCATGGCCCGAAGCCAACTCAATGTATCTCGCACCTGAAGTGCTAATATCACGGCC
1 AATATCATGGCCCGAAGCCAAATCAATGTATCTCGCACCCGAAGTGCTAATATCACGGCC
*
46617148 AATATCATGGCCTGAAGCCAAATCAATGTATCTCGCACCCGAAGTGCTAATAT
1 AATATCATGGCCCGAAGCCAAATCAATGTATCTCGCACCCGAAGTGCTAATAT
46617201 TATGGCCTGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (60 bp):
AATATCATGGCCCGAAGCCAAATCAATGTATCTCGCACCCGAAGTGCTAATATCACGGCC
Found at i:46619766 original size:29 final size:29
Alignment explanation
Indices: 46619733--46619806 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
46619723 GTTGTGAGAT
* *
46619733 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
46619762 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
46619791 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46619807 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:46624098 original size:40 final size:40
Alignment explanation
Indices: 46624043--46624180 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
46624033 CGGATGGTAA
*
46624043 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
46624083 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* *
46624123 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
* *
46624163 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
46624181 TACTTGGTTT
Statistics
Matches: 90, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 15 0.17
40 74 0.82
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:46632271 original size:40 final size:40
Alignment explanation
Indices: 46632212--46632389 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 40
46632202 CGGATGGTAA
* * *
46632212 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
46632252 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
46632293 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* * *
46632332 CCGAGCTAAGTCCCGAAGGCATTTGAGCGAGTAACT-ATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
46632372 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
46632390 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.02
39 14 0.11
40 106 0.85
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:46633831 original size:27 final size:27
Alignment explanation
Indices: 46633801--46633934 Score: 74
Period size: 27 Copynumber: 5.0 Consensus size: 27
46633791 CGTTCTTTTT
46633801 GTATTACGCCATAAAGGCTACT-CTTTC
1 GTATTACGCCATAAAGGC-ACTCCTTTC
** * *
46633828 GTATTTTGCCACAAAGGCATTCCTTTC
1 GTATTACGCCATAAAGGCACTCCTTTC
* * ***
46633855 ATATTGCGCCATAAAGGTTGTCCTTT-
1 GTATTACGCCATAAAGGCACTCCTTTC
* * * *
46633881 GATATTGCGCCACAAAGGTATTCCTTTC
1 G-TATTACGCCATAAAGGCACTCCTTTC
* * * * *
46633909 ATATTACACCACAAACGCATTCCTTT
1 GTATTACGCCATAAAGGCACTCCTTT
46633935 TATATTTCAG
Statistics
Matches: 84, Mismatches: 20, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
26 2 0.02
27 82 0.98
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.34
Consensus pattern (27 bp):
GTATTACGCCATAAAGGCACTCCTTTC
Found at i:46633865 original size:54 final size:54
Alignment explanation
Indices: 46633802--46633915 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
46633792 GTTCTTTTTG
**
46633802 TATTACGCCATAAAGGCTACT-CTTTCG-TATTTTGCCACAAAGGCATTCCTTTCA
1 TATTACGCCATAAAGG-TACTCCTTT-GATATTGCGCCACAAAGGCATTCCTTTCA
* ** *
46633856 TATTGCGCCATAAAGGTTGTCCTTTGATATTGCGCCACAAAGGTATTCCTTTCA
1 TATTACGCCATAAAGGTACTCCTTTGATATTGCGCCACAAAGGCATTCCTTTCA
46633910 TATTAC
1 TATTAC
46633916 ACCACAAACG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
53 3 0.06
54 48 0.94
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (54 bp):
TATTACGCCATAAAGGTACTCCTTTGATATTGCGCCACAAAGGCATTCCTTTCA
Found at i:46633933 original size:54 final size:54
Alignment explanation
Indices: 46633835--46633940 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 54
46633825 TTCGTATTTT
* * * **
46633835 GCCACAAAGGCATTCCTTTCATATTGCGCCATAAAGGTTGTCCTTTGATATTGC
1 GCCACAAAGGCATTCCTTTCATATTACACCACAAAGCATGTCCTTTGATATTGC
* *
46633889 GCCACAAAGGTATTCCTTTCATATTACACCACAAACGCAT-TCCTTTTATATT
1 GCCACAAAGGCATTCCTTTCATATTACACCACAAA-GCATGTCCTTTGATATT
46633941 TCAGTTAGTA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 42 0.95
55 2 0.05
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.34
Consensus pattern (54 bp):
GCCACAAAGGCATTCCTTTCATATTACACCACAAAGCATGTCCTTTGATATTGC
Found at i:46633939 original size:27 final size:27
Alignment explanation
Indices: 46633836--46633940 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 27
46633826 TCGTATTTTG
* * *
46633836 CCACAAAGGCATTCCTTTCATATTGCG
1 CCACAAACGCATTCCTTTCATATTACA
* ** * * *
46633863 CCATAAA-GGTTGTCCTTTGATATTGCG
1 CCACAAACGCAT-TCCTTTCATATTACA
* *
46633890 CCACAAAGGTATTCCTTTCATATTACA
1 CCACAAACGCATTCCTTTCATATTACA
*
46633917 CCACAAACGCATTCCTTTTATATT
1 CCACAAACGCATTCCTTTCATATT
46633941 TCAGTTAGTA
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.03
27 59 0.94
28 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (27 bp):
CCACAAACGCATTCCTTTCATATTACA
Found at i:46636340 original size:22 final size:22
Alignment explanation
Indices: 46636310--46636355 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
46636300 AACAAAGGAT
*
46636310 AATATGAGTTGGAAAATAATTA
1 AATAAGAGTTGGAAAATAATTA
46636332 AATAAGAGTTGGAAAATAATTA
1 AATAAGAGTTGGAAAATAATTA
46636354 AA
1 AA
46636356 GTGTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.28
Consensus pattern (22 bp):
AATAAGAGTTGGAAAATAATTA
Found at i:46649059 original size:21 final size:21
Alignment explanation
Indices: 46649035--46649075 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
46649025 GATATGAGAA
46649035 TTAAAAGTTAAAAAAAACCAC
1 TTAAAAGTTAAAAAAAACCAC
*
46649056 TTAAACGTTAAAAAAAACCA
1 TTAAAAGTTAAAAAAAACCA
46649076 TGGAAAGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.61, C:0.15, G:0.05, T:0.20
Consensus pattern (21 bp):
TTAAAAGTTAAAAAAAACCAC
Found at i:46649089 original size:21 final size:20
Alignment explanation
Indices: 46649038--46649090 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
46649028 ATGAGAATTA
*
46649038 AAAGTTAAAAAAAACCACTT
1 AAAGTTAAAAAAAACCACTG
46649058 AAACGTTAAAAAAAACCA-TGG
1 AAA-GTTAAAAAAAACCACT-G
46649079 AAAGTTCAAAAA
1 AAAGTT-AAAAA
46649091 GTTTTTATGC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 7 0.24
21 22 0.76
ACGTcount: A:0.60, C:0.13, G:0.09, T:0.17
Consensus pattern (20 bp):
AAAGTTAAAAAAAACCACTG
Found at i:46653347 original size:95 final size:95
Alignment explanation
Indices: 46653184--46653380 Score: 358
Period size: 95 Copynumber: 2.1 Consensus size: 95
46653174 AGTCATTCAC
* *
46653184 TCTATGTGATGCAAACGAACAACAGAAATTGGATAACGATCAAATTAGATTTAAAGAAGGCTTAC
1 TCTATGCGATGCAAACGAACAACAGAAATTGGATAAAGATCAAATTAGATTTAAAGAAGGCTTAC
46653249 GACAGAGTGAGTTGGGATTTCATTAGTGCT
66 GACAGAGTGAGTTGGGATTTCATTAGTGCT
*
46653279 TCTATGCGCTGCAAACGAACAACAGAAATTGGATAAAGATCAAATTAGATTTAAAGAAGGCTTAC
1 TCTATGCGATGCAAACGAACAACAGAAATTGGATAAAGATCAAATTAGATTTAAAGAAGGCTTAC
*
46653344 GACAGAGTGAGTTGGGATTTTATTAGTGCT
66 GACAGAGTGAGTTGGGATTTCATTAGTGCT
46653374 TCTATGC
1 TCTATGC
46653381 AGGCTATTGA
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 98 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (95 bp):
TCTATGCGATGCAAACGAACAACAGAAATTGGATAAAGATCAAATTAGATTTAAAGAAGGCTTAC
GACAGAGTGAGTTGGGATTTCATTAGTGCT
Found at i:46658414 original size:49 final size:50
Alignment explanation
Indices: 46658174--46658419 Score: 264
Period size: 49 Copynumber: 4.9 Consensus size: 50
46658164 ATCTATTGTG
* * *
46658174 AGGTCACGTGTGTAGTTCTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
46658224 -GGTCACATGTGTAGTTCTAAGTGCAGGCTACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-TT
* * * * * **
46658274 CGATCACATGTGTAGTACTAAGTGCATGCTACTACATGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
46658324 AGGTCACTTGTGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
46658374 -GGTCGCATGTGCAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
46658420 GTTTTGGCTA
Statistics
Matches: 163, Mismatches: 29, Indels: 9
0.81 0.14 0.04
Matches are distributed among these distances:
49 78 0.48
50 50 0.31
51 35 0.21
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:46668318 original size:49 final size:49
Alignment explanation
Indices: 46668250--46668430 Score: 229
Period size: 49 Copynumber: 3.7 Consensus size: 49
46668240 TCTATTGTGA
* * * *
46668250 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACTGGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
* * **
46668299 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-GGATAATT
* *
46668348 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
* *
46668398 GGTCATATGTGTGGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
46668431 TGCGTACTAG
Statistics
Matches: 113, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.01
49 70 0.62
50 42 0.37
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
Found at i:46668420 original size:99 final size:99
Alignment explanation
Indices: 46668249--46668430 Score: 301
Period size: 99 Copynumber: 1.8 Consensus size: 99
46668239 ATCTATTGTG
* * * *
46668249 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACTGGATTATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCACATGTGTAGT
46668314 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
* * *
46668348 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCATATGTGTGGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCACATGTGTAGT
46668413 ACTAAGTGCAGGCTACTA
66 ACTAAGTGCAGGCTACTA
46668431 TGCGTACTAG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
99 76 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (99 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCACATGTGTAGT
ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:46674243 original size:37 final size:37
Alignment explanation
Indices: 46674185--46674366 Score: 328
Period size: 37 Copynumber: 4.9 Consensus size: 37
46674175 GCTCAGATGA
* *
46674185 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTTATCGGGTCTTACCCGGACAT
*
46674222 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTTATCGGGTCTTACCCGGACAT
46674259 AATCTCCACACGTAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTTATCGGGTCTTACCCGGACAT
*
46674296 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTTATCGGGTCTTACCCGGACAT
46674333 AATCTCCACACGTAGTTATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTTATCGGGTCTTACCCGGA
46674367 ATATATTTCC
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTTATCGGGTCTTACCCGGACAT
Found at i:46674640 original size:48 final size:48
Alignment explanation
Indices: 46674513--46674804 Score: 451
Period size: 48 Copynumber: 6.0 Consensus size: 48
46674503 ACACATCGCC
*
46674513 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
46674565 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
46674613 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
46674663 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
46674711 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
46674759 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
46674805 TATGCATCAA
Statistics
Matches: 223, Mismatches: 13, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
48 135 0.61
49 1 0.00
50 44 0.20
51 1 0.00
52 42 0.19
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:46674717 original size:98 final size:98
Alignment explanation
Indices: 46674513--46674804 Score: 489
Period size: 98 Copynumber: 3.0 Consensus size: 98
46674503 ACACATCGCC
*
46674513 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATATATATTTCACA
* *
46674578 TTGACCATTCGGCTTTACCACATATGCATATCTCA
64 TTAACCATTCGGCTTTACCACATATACATATCTCA
*
46674613 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
*
46674678 AACCATTCAGCTTTACCACATATACATATCTCA
66 AACCATTCGGCTTTACCACATATACATATCTCA
*
46674711 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
*
46674774 AGCCATTCGGCTTTACCACATATACATATCT
66 AACCATTCGGCTTTACCACATATACATATCT
46674805 TATGCATCAA
Statistics
Matches: 183, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
96 44 0.24
98 94 0.51
100 45 0.25
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (98 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
AACCATTCGGCTTTACCACATATACATATCTCA
Found at i:46674757 original size:146 final size:147
Alignment explanation
Indices: 46674516--46674804 Score: 474
Period size: 146 Copynumber: 2.0 Consensus size: 147
46674506 CATCGCCTAC
* * *
46674516 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACATTG
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTC--A-ATACATATTTCACATTG
* *
46674581 ACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTTGGCTTTACCA
63 ACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA
46674646 CATATACATATCTCATATAT
128 CATATACATATCTCATATAT
*
46674666 ATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTC-ATACATATTTCACATT-AGC
1 ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTGA-C
46674729 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
65 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
46674794 TATACATATCT
130 TATACATATCT
46674805 TATGCATCAA
Statistics
Matches: 132, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
145 1 0.01
146 90 0.68
150 41 0.31
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (147 bp):
ATATTTCACACTAACCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTGACC
ATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT
ATACATATCTCATATAT
Found at i:46678301 original size:40 final size:40
Alignment explanation
Indices: 46678257--46678615 Score: 459
Period size: 40 Copynumber: 9.0 Consensus size: 40
46678247 GAATACACAT
* * * *
46678257 CACCAGCATGATTGCTCTTCGAGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
46678297 CACCAGCACAAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
46678337 CTCTAGCACAAATGCTCTTTGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
46678377 CACCAGCACGAATGCTCTTTGGGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
46678417 CACCAGCACAAATGCTTTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
46678457 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
** *
46678497 CACCAGCACGAATGCTCTTCGGGACTTAGCCTAGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
46678537 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * **
46678577 CGCCAGCACAAATGCTGGT-GGGAACTTAGCCCGGATATA
1 CACCAGCACGAATGCTCTTCGGG-ACTTAGCCCGGATATA
46678616 TATATAACTC
Statistics
Matches: 276, Mismatches: 42, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 3 0.01
40 273 0.99
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:46679936 original size:37 final size:37
Alignment explanation
Indices: 46679877--46680066 Score: 236
Period size: 37 Copynumber: 4.9 Consensus size: 37
46679867 AGCTCAGATG
* * *
46679877 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
46679914 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
46679951 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
46679988 CAATCTCCACACGTAGTCATCGTAGTCATCGGGTCTTACCCGGACA
1 AAATCT---C-C--A--CA-CGTAGTCATCGGGTCTTACCCGGACA
* *
46680034 TAATCTCCACACGTAGTCATCGCGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
46680067 AAATATATTT
Statistics
Matches: 137, Mismatches: 7, Indels: 18
0.85 0.04 0.11
Matches are distributed among these distances:
37 96 0.70
38 2 0.01
40 2 0.01
41 1 0.01
42 1 0.01
43 2 0.01
45 2 0.01
46 31 0.23
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:46679973 original size:74 final size:79
Alignment explanation
Indices: 46679878--46680065 Score: 260
Period size: 83 Copynumber: 2.4 Consensus size: 79
46679868 GCTCAGATGA
* *
46679878 AATCTCCACACGAAGTTATCGGGTCTTACCCAGACAAAATCT-C-C-A-CA-CGTAGTCATCGGG
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCACGAGCATCGTAGTCATCGGG
46679938 TCTTACCCGGACAT
66 TCTTACCCGGACAT
* *
46679952 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACACAATCTCCACACGTAGTCATCGTAGTCAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAAAATCT-C-CACG-AG-CATCGTAGTCAT
46680017 CGGGTCTTACCCGGACAT
62 CGGGTCTTACCCGGACAT
*
46680035 AATCTCCACACGTAGTCATCGCGTCTTACCC
1 AATCTCCACACGTAGTCATCGGGTCTTACCC
46680066 GAAATATATT
Statistics
Matches: 100, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
74 38 0.38
77 1 0.01
78 1 0.01
80 1 0.01
82 2 0.02
83 57 0.57
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.24
Consensus pattern (79 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCACGAGCATCGTAGTCATCGGG
TCTTACCCGGACAT
Found at i:46680029 original size:46 final size:46
Alignment explanation
Indices: 46679962--46680055 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
46679952 AATCTCCACA
46679962 CGTAGTCATCGGGTCTTACCCGGACACAATCTCCACACGTAGTCAT
1 CGTAGTCATCGGGTCTTACCCGGACACAATCTCCACACGTAGTCAT
*
46680008 CGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCAT
1 CGTAGTCATCGGGTCTTACCCGGACACAATCTCCACACGTAGTCAT
46680054 CG
1 CG
46680056 CGTCTTACCC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (46 bp):
CGTAGTCATCGGGTCTTACCCGGACACAATCTCCACACGTAGTCAT
Found at i:46680341 original size:48 final size:49
Alignment explanation
Indices: 46680215--46680358 Score: 236
Period size: 50 Copynumber: 2.9 Consensus size: 49
46680205 ACACATCGCC
46680215 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * *
46680265 TATATATTTCACATTACCCATTCAGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
*
46680313 TACATATTTCACATTAGCCATTCGGCTTTACCACGTATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
46680359 TATGCATTAA
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
48 43 0.49
50 44 0.51
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:46683018 original size:51 final size:47
Alignment explanation
Indices: 46682896--46683070 Score: 179
Period size: 49 Copynumber: 3.5 Consensus size: 47
46682886 TCTATTGTGA
* *
46682896 GGTCACGTGTGTAGTACTAAATGCAAGCTACTACGTGTACCAAATTATT
1 GGTCACGTGTGTAGTACTAAGTGCAA-CTACTACGTGTACCTAA-TATT
* * * *
46682945 GGTCGCATGTGTAGTACTAAGTGCAATCTACTATGCGTACCTAATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAA-CTACTACGTGTACCTAAT-A-TT
* * * *
46682995 CGATCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTATCTGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCA-ACTACTACGTGTACCTAAT-ATT
46683045 AGGTCACGTGTGTAGTACTAAGTGCA
1 -GGTCACGTGTGTAGTACTAAGTGCA
46683071 GTGTGACAGC
Statistics
Matches: 104, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 38 0.37
50 28 0.27
51 36 0.35
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.31
Consensus pattern (47 bp):
GGTCACGTGTGTAGTACTAAGTGCAACTACTACGTGTACCTAATATT
Found at i:46685881 original size:28 final size:28
Alignment explanation
Indices: 46685816--46685966 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
46685806 GAGATTGGCG
* * * *
46685816 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
46685845 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
46685873 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46685901 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46685929 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
46685956 CTGAGTGTGCG
1 CTAAGTGTGCG
46685967 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:46694115 original size:28 final size:28
Alignment explanation
Indices: 46694050--46694200 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
46694040 GAGATTGGCG
* * * *
46694050 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
46694079 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
46694107 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46694135 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
46694163 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
46694190 CTGAGTGTGCG
1 CTAAGTGTGCG
46694201 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:46696600 original size:79 final size:80
Alignment explanation
Indices: 46696469--46696616 Score: 228
Period size: 79 Copynumber: 1.9 Consensus size: 80
46696459 TATTCGGATG
* * **
46696469 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAAG-CCCGAAGGCA
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
46696533 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
*
46696548 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGC
46696612 ATTTG
65 ATTTG
46696617 AGCAAGTAGC
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
78 2 0.03
79 46 0.74
80 14 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:46696638 original size:79 final size:79
Alignment explanation
Indices: 46696469--46696639 Score: 222
Period size: 79 Copynumber: 2.2 Consensus size: 79
46696459 TATTCGGATG
* * **
46696469 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* *
46696534 TTGTGCGAGTTACT
66 TTGAGCAAGTTACT
*
46696548 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
46696612 ATTTGAGCAAG-TAGCT
64 ATTTGAGCAAGTTA-CT
*
46696628 ATATCC-GGCTAA
1 ATAACCGGGCTAA
46696640 ATTCCGAAGG
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
78 2 0.02
79 54 0.67
80 25 0.31
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACT
Found at i:46696649 original size:39 final size:40
Alignment explanation
Indices: 46696469--46696616 Score: 228
Period size: 40 Copynumber: 3.7 Consensus size: 40
46696459 TATTCGGATG
* *
46696469 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
46696509 A-ATTTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
46696548 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
46696588 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
46696617 AGCAAGTAGC
Statistics
Matches: 97, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
39 34 0.35
40 63 0.65
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:46701569 original size:67 final size:68
Alignment explanation
Indices: 46701461--46701615 Score: 260
Period size: 67 Copynumber: 2.3 Consensus size: 68
46701451 GAGGAAGCGT
46701461 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCTACATATATCTAT-TCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCTACATATATCTATATCTGGTGACTTCGTCACA
46701525 ATA
66 ATA
* *
46701528 TCTGGCAGCCTCGTTGCAATCTGGTGGCCTCGCTACATATATCTGTATCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCTACATATATCTATATCTGGTGACTTCGTCACA
46701593 ATA
66 ATA
*
46701596 TCTGGC-TCCTTCGCTGCAAT
1 TCTGGCAGCC-TCGCTGCAAT
46701616 TTCTATGGTG
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
67 46 0.56
68 36 0.44
ACGTcount: A:0.18, C:0.28, G:0.21, T:0.32
Consensus pattern (68 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCTACATATATCTATATCTGGTGACTTCGTCACA
ATA
Found at i:46712135 original size:22 final size:22
Alignment explanation
Indices: 46712107--46712180 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
46712097 AAGTGTATAT
46712107 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * ***
46712129 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GCCG
46712152 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
46712174 ATGTGAT
1 ATGTGAT
46712181 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:46712140 original size:47 final size:47
Alignment explanation
Indices: 46712036--46712348 Score: 474
Period size: 47 Copynumber: 6.7 Consensus size: 47
46712026 TTAGGATTCT
* * *
46712036 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGG-CTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
46712082 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46712129 ATGTGATGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
46712174 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46712221 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
46712268 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
46712315 ACGTGATGGATGTGAAAGTG-ATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
46712349 TCCCGAAGGG
Statistics
Matches: 248, Mismatches: 15, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
45 46 0.19
46 42 0.17
47 160 0.65
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:46712240 original size:139 final size:138
Alignment explanation
Indices: 46712036--46712348 Score: 477
Period size: 139 Copynumber: 2.2 Consensus size: 138
46712026 TTAGGATTCT
*
46712036 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGGATGTGAA-AGTG-ATATATGTGATAAGGCTAATGGCCGATGTGATGAATGTGAAAG
*
46712100 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATGTGATAAGGC
64 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATGTGACAAGGC
* *
46712164 CTAATGGCCG
129 CGAATGGCCA
* *
46712174 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGGATGTGAAAGTG-ATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAG
*
46712239 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGG
64 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATGTGACAAGG
*
46712304 CCGAGTGGCCA
128 CCGAATGGCCA
* *
46712315 ACGTGATGGATGTGAAAGTGATAAATGTGATAAG
1 ATGTGATGGATGTGAAAGTGATATATGTGATAAG
46712349 TCCCGAAGGG
Statistics
Matches: 158, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
137 1 0.01
138 30 0.19
139 77 0.49
140 12 0.08
141 38 0.24
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (138 bp):
ATGTGATGGATGTGAAAGTGATATATGTGATAAGGCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATGTGACAAGGCCG
AATGGCCA
Found at i:46712522 original size:36 final size:37
Alignment explanation
Indices: 46712467--46712544 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
46712457 CCGAGCTCTA
* *
46712467 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
46712503 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46712540 AAGAC
1 AAGAC
46712545 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46713782 original size:43 final size:43
Alignment explanation
Indices: 46713734--46713879 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
46713724 TTGGTTTTCA
46713734 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46713777 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46713820 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46713863 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
46713880 TTGAAATGCA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:46713896 original size:29 final size:29
Alignment explanation
Indices: 46713861--46713934 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
46713851 GTTGTGAGAT
* *
46713861 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
46713890 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
46713919 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46713935 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:46714365 original size:40 final size:40
Alignment explanation
Indices: 46714321--46714477 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
46714311 GAGTTACTAA
*
46714321 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
46714361 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
** * *
46714401 ATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
46714441 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
46714478 CGTGTATTCG
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:46714379 original size:80 final size:80
Alignment explanation
Indices: 46714242--46714471 Score: 225
Period size: 80 Copynumber: 2.9 Consensus size: 80
46714232 TCGAATGATG
** * * *
46714242 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGCGA-TATATCCGGGCTAAG-TCCCGAAGAGC
** *
46714303 ATTGGTGCGAGTTACTAAA
63 ATTCATGCGAGTGA-TAAA
*
46714322 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
* **
46714387 CATGCTAGTGATGTA
66 CATGCGAGTGATAAA
** * * * * *
46714402 TCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
46714467 CATGC
66 CATGC
46714472 TGGTGACGTG
Statistics
Matches: 126, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.01
80 101 0.80
81 18 0.14
82 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
CATGCGAGTGATAAA
Found at i:46714457 original size:120 final size:120
Alignment explanation
Indices: 46714242--46714472 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 120
46714232 TCGAATGATG
** *
46714242 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
* * *
46714307 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
66 GTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTA
** * * *
46714362 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTTCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
* * *
46714425 TTCGTGCTAGTGA-TATATCCGTGCTAAATCCCGAAGAGCAATCATGCT
63 TTCGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCT
46714473 GGTGACGTGT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
120 68 0.72
121 20 0.21
122 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTA
Found at i:46718728 original size:47 final size:47
Alignment explanation
Indices: 46718677--46719038 Score: 559
Period size: 47 Copynumber: 7.7 Consensus size: 47
46718667 TTAGGATTCT
* * *
46718677 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
46718724 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
46718771 ATGTGACGAATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46718816 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46718863 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
46718910 ATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
46718957 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
46719004 ACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
46719039 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
45 43 0.15
46 1 0.00
47 248 0.85
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:46718829 original size:139 final size:140
Alignment explanation
Indices: 46718677--46719038 Score: 566
Period size: 139 Copynumber: 2.6 Consensus size: 140
46718667 TTAGGATTCT
* * *
46718677 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
46718741 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGT-ATATGTGATAAGG
65 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTAATATGTGATAAGG
46718805 CCTAATGGCCG
130 CCTAATGGCCG
46718816 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
46718881 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGG
66 TGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTA-ATATGTGATAAGG
46718946 CCTAATGGCCG
130 CCTAATGGCCG
* * * * * * *
46718957 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
46719022 TGCATAAATGTGATAAG
66 TGTATATATGTGATAAG
46719039 TCCCGAAGGG
Statistics
Matches: 206, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
138 1 0.00
139 108 0.52
141 97 0.47
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (140 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTAATATGTGATAAGGC
CTAATGGCCG
Found at i:46718916 original size:22 final size:22
Alignment explanation
Indices: 46718888--46718963 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
46718878 AAGTGTATAT
46718888 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** * **
46718910 ATGTGATGAATGTGAAAGTGTACAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
46718935 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
46718957 ATGTGAT
1 ATGTGAT
46718964 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:46719213 original size:37 final size:37
Alignment explanation
Indices: 46719157--46719236 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
46719147 CCGAGCTCTA
* * *
46719157 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
46719194 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
46719231 AAGACT
1 AAGACT
46719237 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46720981 original size:26 final size:26
Alignment explanation
Indices: 46720952--46721001 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
46720942 GAAAATTATT
46720952 AAAATTTATG-GAATGAATTGGATAAG
1 AAAATTTATGAG-ATGAATTGGATAAG
*
46720978 AAAATTTATGAGATGAATTTGATA
1 AAAATTTATGAGATGAATTGGATA
46721002 TTTGAAATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.20, T:0.34
Consensus pattern (26 bp):
AAAATTTATGAGATGAATTGGATAAG
Found at i:46723492 original size:44 final size:42
Alignment explanation
Indices: 46723442--46723600 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 42
46723432 TATGTGTTCT
*
46723442 CGTGTAAGACCATGTCTGGGATGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGA-TT-TGATTTA
46723486 CGTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTT-
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCG-ATTTGATTTA
* * * *
46723528 CGTGTAAGACCCTATCTGGGAAAG-TGACATCGATATTTGA-TTA
1 CGTGTAAGACCATGTCTGGG-ACGTTGGCATCG--ATTTGATTTA
* *
46723571 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTTGGCAT
46723601 TTTATGAGCT
Statistics
Matches: 99, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
42 29 0.29
43 36 0.36
44 33 0.33
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCGATTTGATTTA
Found at i:46731053 original size:43 final size:43
Alignment explanation
Indices: 46730897--46731054 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
46730887 ATGTGTTCTA
*
46730897 GTGTAAGACCACGTCTGGGACGTTGGCATC-A-ACTTATGATTTAC
1 GTGTAAGACCACGTCTAGGACGTTGGCATCGATA-TT-TGA-TTAC
* * * *
46730941 GTTTAAGACCACGTCTAGAACATTGGCATCG-TATTTGATTTC
1 GTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTAC
46730983 GTGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTAGGAC-GTTGGCATCGATATTTGATTAC
* *
46731026 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTAGGACGTTGGCAT
46731055 TGTATGAGCT
Statistics
Matches: 96, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 29 0.30
43 36 0.38
44 29 0.30
45 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTAC
Found at i:46740891 original size:43 final size:43
Alignment explanation
Indices: 46740708--46740891 Score: 235
Period size: 43 Copynumber: 4.3 Consensus size: 43
46740698 GCTATAGATG
* * * *
46740708 ACGCCGCTAAAGGTCATGACCTTTAGCGGCGCGTTACCCATAA
1 ACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTACCCAAAA
* * * *
46740751 ACGCCGCTAAATG-TGATGACCTTTAGCGACGCTTTACCCACAA
1 ACGCCACTAAA-GATCATGACCTTTAGCGGCGCTTTACCCAAAA
* * *
46740794 ACGCCACTAAATATCATAACCTTTAGCGGCGCTTTACCCAGAA
1 ACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTACCCAAAA
46740837 ACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTACCCAAAA
1 ACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTACCCAAAA
* *
46740880 AAGTCACTAAAG
1 ACGCCACTAAAG
46740892 GTAATGAAAT
Statistics
Matches: 124, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
43 123 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (43 bp):
ACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTACCCAAAA
Found at i:46741091 original size:19 final size:21
Alignment explanation
Indices: 46741050--46741097 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
46741040 TTAAAATTTT
46741050 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
46741071 AA-TAAAAAT-TTAGAATCAA
1 AACTAAAAATATTAAAATAAA
46741090 AACTAAAA
1 AACTAAAA
46741098 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.23
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:46742968 original size:24 final size:24
Alignment explanation
Indices: 46742936--46742984 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
46742926 ATATACAAAG
46742936 AAATAGCAAGTTCTACCTTCTAAA
1 AAATAGCAAGTTCTACCTTCTAAA
46742960 AAATAGCAAGTTCTACCTTCTAAA
1 AAATAGCAAGTTCTACCTTCTAAA
46742984 A
1 A
46742985 CAGGACTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (24 bp):
AAATAGCAAGTTCTACCTTCTAAA
Found at i:46746395 original size:14 final size:14
Alignment explanation
Indices: 46746376--46746402 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
46746366 GGATTATAGG
46746376 AAGAATAAAAATGA
1 AAGAATAAAAATGA
46746390 AAGAATAAAAATG
1 AAGAATAAAAATG
46746403 TCACCAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
AAGAATAAAAATGA
Found at i:46748744 original size:15 final size:14
Alignment explanation
Indices: 46748706--46748744 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
46748696 AATTAATCTA
*
46748706 AACCCCAAACCCTT
1 AACCTCAAACCCTT
46748720 AACCTCAAACCCTT
1 AACCTCAAACCCTT
*
46748734 ACACCTTAAAC
1 A-ACCTCAAAC
46748745 TCTAACTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (14 bp):
AACCTCAAACCCTT
Found at i:46748840 original size:14 final size:14
Alignment explanation
Indices: 46748823--46748913 Score: 56
Period size: 14 Copynumber: 6.0 Consensus size: 14
46748813 CTAGTTAACT
46748823 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
* * *
46748837 CCTAAACCATATAT
1 CCTAAACCTTAAAC
* *
46748851 CTTAAACCATAGTTAAC
1 CCTAAACC-T--TAAAC
*
46748868 TCATAAACCTTAAAC
1 -CCTAAACCTTAAAC
46748883 CCTAAACCATCTTAAAC
1 CCTAAA-C--CTTAAAC
*
46748900 CATAAACCTTAAAC
1 CCTAAACCTTAAAC
46748914 TATAATGATA
Statistics
Matches: 58, Mismatches: 12, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
14 30 0.52
15 5 0.09
16 1 0.02
17 15 0.26
18 7 0.12
ACGTcount: A:0.44, C:0.30, G:0.01, T:0.25
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:46749119 original size:41 final size:41
Alignment explanation
Indices: 46749072--46749277 Score: 215
Period size: 41 Copynumber: 5.1 Consensus size: 41
46749062 GTTATATGAC
* * *
46749072 TTTTAGCGGTGTTTTACCAAAAGCACCGCTAATGCTCTGGG
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
46749113 TTTTAGCGACGTTTTACCAAAAGTGCCGCTAATACTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
46749154 TTTTAGCGGCGTTTTA-CTAAAGCGCCTCT-ATGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * *
46749192 TTTTAGCGGCGTTTTTTACTAAAA-CGCCGCTATTTCTCT-GT
1 TTTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
46749233 TTTTAGCGGAGTTTTACCAAAAACACCGCTATTGCTCTGTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG-GT
46749275 TTT
1 TTT
46749278 ACAATTTTTG
Statistics
Matches: 138, Mismatches: 20, Indels: 13
0.81 0.12 0.08
Matches are distributed among these distances:
38 13 0.09
39 16 0.12
40 34 0.25
41 70 0.51
42 5 0.04
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:46749231 original size:80 final size:80
Alignment explanation
Indices: 46749072--46749278 Score: 222
Period size: 79 Copynumber: 2.6 Consensus size: 80
46749062 GTTATATGAC
* *
46749072 TTTTAGCGGTGTTTTACCAAAAGCACCGCTAATGCTCTGGGTTTTAGCGACGTTTTACCAAAAGT
1 TTTTAGCGGAGTTTTA-CAAAAGCACCGCTAATGCTCTGGGTTTTAGCGACGTTTTACCAAAAGC
46749137 GCCGCTAATACTCTGGT
65 GCCGCTAATACTCT-GT
* * * * * * *
46749154 TTTTAGCGGCGTTTTACTAAAGCGCCTCT-ATGCTCT-GTTTTTAGCGGCGTTTTTTACTAAAA-
1 TTTTAGCGGAGTTTTACAAAAGCACCGCTAATGCTCTGGGTTTTAGCGACG--TTTTACCAAAAG
* *
46749216 CGCCGCTATTTCTCTGT
64 CGCCGCTAATACTCTGT
* * *
46749233 TTTTAGCGGAGTTTTACCAAAAACACCGCTATTGCTCTGTGTTTTA
1 TTTTAGCGGAGTTTTA-CAAAAGCACCGCTAATGCTCTGGGTTTTA
46749279 CAATTTTTGC
Statistics
Matches: 102, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
79 28 0.27
80 28 0.27
81 26 0.25
82 20 0.20
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (80 bp):
TTTTAGCGGAGTTTTACAAAAGCACCGCTAATGCTCTGGGTTTTAGCGACGTTTTACCAAAAGCG
CCGCTAATACTCTGT
Found at i:46756508 original size:21 final size:20
Alignment explanation
Indices: 46756484--46756559 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 20
46756474 CTAGGAATTA
46756484 TGTGATCTGAACTCATGGAGT
1 TGTGATCTGAACTCAT-GAGT
** *
46756505 TGTGATCTGAGTTCATGATAT
1 TGTGATCTGAACTCATGA-GT
46756526 ATGTGACATCTGAACTCATTGAGT
1 -TGTG--ATCTGAACTCA-TGAGT
*
46756550 TGTGGTCTGA
1 TGTGATCTGA
46756560 GTTCATGATG
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
20 2 0.05
21 20 0.47
22 4 0.09
23 4 0.09
24 10 0.23
25 3 0.07
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAACTCATGAGT
Found at i:46756544 original size:45 final size:45
Alignment explanation
Indices: 46756488--46756578 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
46756478 GAATTATGTG
*
46756488 ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATATGAC
* * *
46756533 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATATGAC
1 ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATATGAC
46756578 A
1 A
46756579 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.36
Consensus pattern (45 bp):
ATCTGAACTCATGGAGTTGTGATCTGAGTTCATGATATATATGAC
Found at i:46757001 original size:43 final size:43
Alignment explanation
Indices: 46756940--46757026 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
46756930 AACTCATGAG
*
46756940 AATGACATGAGATATGATGAACTTGTGGTAAGAATAAGAATAT
1 AATGACATGAGATATGATGAACTAGTGGTAAGAATAAGAATAT
*
46756983 AATGATATGAGATATGATGAACTAGTGGTAAGAATAAGAATAT
1 AATGACATGAGATATGATGAACTAGTGGTAAGAATAAGAATAT
46757026 A
1 A
46757027 TATATATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.46, C:0.03, G:0.23, T:0.28
Consensus pattern (43 bp):
AATGACATGAGATATGATGAACTAGTGGTAAGAATAAGAATAT
Found at i:46775398 original size:48 final size:48
Alignment explanation
Indices: 46775327--46775614 Score: 526
Period size: 48 Copynumber: 6.0 Consensus size: 48
46775317 CAAGATAAAT
* *
46775327 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
46775375 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
46775423 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
46775471 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
46775517 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
46775565 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
46775613 AT
1 AT
46775615 GTGTGTATAT
Statistics
Matches: 233, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
46 45 0.19
48 188 0.81
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:46775541 original size:142 final size:143
Alignment explanation
Indices: 46775327--46775614 Score: 524
Period size: 142 Copynumber: 2.0 Consensus size: 143
46775317 CAAGATAAAT
* *
46775327 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-GTATGAGATATGTATATGTGGTAA
46775392 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
65 AGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
*
46775457 GAAATATGTATGAG
130 GAAATATGTAGGAG
*
46775471 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-TATGAGATATGTATATGTGGTAAA
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAGTATGAGATATGTATATGTGGTAAA
46775535 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
66 GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
46775600 AAATATGTAGGAG
131 AAATATGTAGGAG
46775613 AT
1 AT
46775615 GTGTGTATAT
Statistics
Matches: 140, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
142 103 0.74
144 37 0.26
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (143 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATAGTATGAGATATGTATATGTGGTAAA
GCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
AAATATGTAGGAG
Found at i:46775578 original size:94 final size:94
Alignment explanation
Indices: 46775327--46775605 Score: 513
Period size: 94 Copynumber: 2.9 Consensus size: 94
46775317 CAAGATAAAT
* *
46775327 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
46775392 AGCCGAATGGCTAGTGTGAAATATGTATGAG
66 AGCCGAATGGCTAGTGTGAAATA--TATGAG
46775423 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
*
46775488 AGCCGAATGGCTAATGTGAAATATATGAG
66 AGCCGAATGGCTAGTGTGAAATATATGAG
46775517 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
46775582 AGCCGAATGGCTAGTGTGAAATAT
66 AGCCGAATGGCTAGTGTGAAATAT
46775606 GTAGGAGATG
Statistics
Matches: 179, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
94 94 0.53
96 85 0.47
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (94 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAGTGTGAAATATATGAG
Found at i:46775810 original size:37 final size:37
Alignment explanation
Indices: 46775755--46775857 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
46775745 GGAAATATAT
46775755 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
46775792 TCCGGGTAAGACCTGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
46775829 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
46775858 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:46780889 original size:99 final size:95
Alignment explanation
Indices: 46780766--46780988 Score: 256
Period size: 99 Copynumber: 2.3 Consensus size: 95
46780756 CATCAAGTCA
*
46780766 ATGCCATGTCCCAGACATGGTCTTACACTG-ACTATCAAAATCGAGCCCGACGCCATGTCCTAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTGCAC-ATCAAAA-CGAG-CCGACGCCATGTCCCAAA
*
46780830 CATGGTCTTACACTAGCTCTCA-CATATCCGTGCCG
63 CATGGTCTTACACTAGCTCTCATAATAT--G-GCCG
* * * * * *
46780865 ATGCCATGTCCCAGACATGGTCTTACACTGTCACCTCTATACGTGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTG-CACATCAAAACGAGCCGACGCCATGTCCCAAACA
* *
46780930 TGGTCTTACATTGGCTCTCATAATATGGCCG
65 TGGTCTTACACTAGCTCTCATAATATGGCCG
*
46780961 ATG-CATGTCCTAGACAT-GTCTTACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
46780989 GCGCACAAAT
Statistics
Matches: 110, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
94 11 0.10
95 13 0.12
96 7 0.06
97 1 0.01
98 35 0.32
99 37 0.34
100 4 0.04
101 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (95 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGCACATCAAAACGAGCCGACGCCATGTCCCAAACAT
GGTCTTACACTAGCTCTCATAATATGGCCG
Found at i:46780925 original size:48 final size:48
Alignment explanation
Indices: 46780716--46780990 Score: 224
Period size: 48 Copynumber: 5.7 Consensus size: 48
46780706 GGGTATAATA
* * * * *
46780716 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCATCCATCAAGT-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTCTAT-ACGTG
* * * * *
46780764 -CAATGCCATGTCCCAGACATGGTCTTACACT-G-ACTATCAAAATCGAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC-CTCTATA-CGTG
* * * * * * *
46780811 CCCGACGCCATGTCCTAAACATGGTCTTACACTAGCTCTCACATATCCGTG
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC-CTC-TATACGTG
*
46780862 CCGATGCCATGTCCCAGACATGGTCTTACACTGTCACCTCTATACGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTCTATACGTG
* * *
46780910 CCGATGCCATGTCCCAGACATGGTCTTACATTGGC-TCTCATAATATG-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTC-T-ATACGTG
*
46780958 CCGATG-CATGTCCTAGACAT-GTCTTACACTGGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC
46780991 GCACAAATAA
Statistics
Matches: 185, Mismatches: 32, Indels: 22
0.77 0.13 0.09
Matches are distributed among these distances:
45 2 0.01
46 18 0.10
47 45 0.24
48 48 0.26
49 33 0.18
50 32 0.17
51 6 0.03
52 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACCTCTATACGTG
Found at i:46794013 original size:26 final size:26
Alignment explanation
Indices: 46793958--46794013 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
46793948 CAACCTTAAC
* *
46793958 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTGCA
*
46793984 CCTAGGGGTAAATCTGTAAATTTT-CA
1 CCTAGGGGTAAATCAGT-AATTTTGCA
46794010 CCTA
1 CCTA
46794014 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTGCA
Found at i:46801645 original size:43 final size:44
Alignment explanation
Indices: 46801555--46801678 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 44
46801545 TCACTTATCG
* * * * * * *
46801555 ATGCCACTGCCCCAGATAGGGTCTTACACGAAATCA-TATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAACA
46801598 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT-ACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAACA
* * *
46801641 ATGCCAATGTCCCAGACATAGTCTTACATGTAACCACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
46801679 TCTCGGTAAC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
43 68 0.97
44 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAACA
Found at i:46813294 original size:3 final size:3
Alignment explanation
Indices: 46813286--46813326 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
46813276 GTTCCAACTT
46813286 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
46813327 TTAGGTTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:46814768 original size:43 final size:43
Alignment explanation
Indices: 46814707--46814794 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
46814697 TAAGGAGCAT
*
46814707 TACCAGACAGACAGAACATTATAGAATTACAAATATCACATAG
1 TACCAGACAGACAAAACATTATAGAATTACAAATATCACATAG
46814750 TACCAGACAGACAAAACATTATAGAATTACAAATATCACATAG
1 TACCAGACAGACAAAACATTATAGAATTACAAATATCACATAG
46814793 TA
1 TA
46814795 TTATCATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.50, C:0.18, G:0.10, T:0.22
Consensus pattern (43 bp):
TACCAGACAGACAAAACATTATAGAATTACAAATATCACATAG
Found at i:46814790 original size:22 final size:22
Alignment explanation
Indices: 46814722--46814790 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 22
46814712 GACAGACAGA
46814722 ACATTATAGAATTACAAATATC
1 ACATTATAGAATTACAAATATC
** * * * **
46814744 ACA-TAGTACCA-GACAGACAAA
1 ACATTA-TAGAATTACAAATATC
46814765 ACATTATAGAATTACAAATATC
1 ACATTATAGAATTACAAATATC
46814787 ACAT
1 ACAT
46814791 AGTATTATCA
Statistics
Matches: 30, Mismatches: 14, Indels: 6
0.60 0.28 0.12
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.51, C:0.17, G:0.07, T:0.25
Consensus pattern (22 bp):
ACATTATAGAATTACAAATATC
Found at i:46817507 original size:39 final size:40
Alignment explanation
Indices: 46817412--46817673 Score: 310
Period size: 39 Copynumber: 6.7 Consensus size: 40
46817402 TTGAATGATG
*
46817412 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
46817450 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
46817491 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
46817530 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
46817569 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
46817608 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
46817647 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46817674 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 57 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:46824212 original size:40 final size:40
Alignment explanation
Indices: 46824159--46824235 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
46824149 CTTAGTACCA
* ** *
46824159 CATAAAGCCGAAGCTATTTCAATTTGCACACTAAGTGATG
1 CATAAAGCCGAAGCTATCTCAAAATACACACTAAGTGATG
* *
46824199 CATATAGCTGAAGCTATCTCAAAATACACACTAAGTG
1 CATAAAGCCGAAGCTATCTCAAAATACACACTAAGTG
46824236 CCAAACATAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.26
Consensus pattern (40 bp):
CATAAAGCCGAAGCTATCTCAAAATACACACTAAGTGATG
Found at i:46826156 original size:59 final size:59
Alignment explanation
Indices: 46826084--46826203 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
46826074 AAATTTAAGT
46826084 TAATTAGTAAGGGTAAATTGGTAATTAATCAAATAAATACAAACAAATAACTAAAATGC
1 TAATTAGTAAGGGTAAATTGGTAATTAATCAAATAAATACAAACAAATAACTAAAATGC
46826143 TAATTAGTAAGGGTAAATTGGTAATTAATCAAATAAATACAAACAAATAACTAAAATGC
1 TAATTAGTAAGGGTAAATTGGTAATTAATCAAATAAATACAAACAAATAACTAAAATGC
46826202 TA
1 TA
46826204 TCATCTTCTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.28
Consensus pattern (59 bp):
TAATTAGTAAGGGTAAATTGGTAATTAATCAAATAAATACAAACAAATAACTAAAATGC
Found at i:46827515 original size:12 final size:12
Alignment explanation
Indices: 46827498--46827523 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46827488 TAAAGTCCTT
46827498 TATAGATACAGA
1 TATAGATACAGA
46827510 TATAGATACAGA
1 TATAGATACAGA
46827522 TA
1 TA
46827524 CAAATAACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.15, T:0.27
Consensus pattern (12 bp):
TATAGATACAGA
Found at i:46839929 original size:25 final size:24
Alignment explanation
Indices: 46839885--46839935 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
46839875 ATTTTGACGA
*
46839885 TATCCCACTAAATCACAACCCCCAT
1 TATCCCACTAAAACACAA-CCCCAT
**
46839910 TATCCCACTAAAACTTAACCCCAT
1 TATCCCACTAAAACACAACCCCAT
46839934 TA
1 TA
46839936 GAATTCTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (24 bp):
TATCCCACTAAAACACAACCCCAT
Found at i:46847096 original size:27 final size:27
Alignment explanation
Indices: 46847066--46847157 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
46847056 ATTACCAAAG
* * *
46847066 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
46847093 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
46847120 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
46847147 TACCATCGATT
1 TACCCTCGATT
46847158 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:46847219 original size:27 final size:27
Alignment explanation
Indices: 46847189--46847288 Score: 139
Period size: 27 Copynumber: 3.7 Consensus size: 27
46847179 TATAGGGTAG
46847189 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
46847216 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
46847243 AATTATCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
46847270 AATTACCAAAATACCCCTA
1 AATTACCAAAATACCCCTA
46847289 ATTTACAAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.05
27 55 0.89
28 4 0.06
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:46847228 original size:54 final size:53
Alignment explanation
Indices: 46847156--46847288 Score: 135
Period size: 54 Copynumber: 2.5 Consensus size: 53
46847146 TTACCATCGA
* ** *
46847156 TTGTGAAATTACTGAAATACCCCTATAGGGT-AGAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCCTAT-GGGTGA-AATTACCAAAATACCCTC-AAT
* * ** *
46847210 TTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTATCAAAATACCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-ATGGGTGAAATTACCAAAATACCCTCAAT
46847264 TTGTAAAATTACCAAAATACCCCTA
1 TTGTAAAATTACCAAAATACCCCTA
46847289 ATTTACAAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
54 62 0.95
55 3 0.05
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTATGGGTGAAATTACCAAAATACCCTCAAT
Found at i:46847291 original size:27 final size:27
Alignment explanation
Indices: 46847189--46847301 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
46847179 TATAGGGTAG
*
46847189 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
46847216 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
46847243 AATTATCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
**
46847270 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
46847297 AATTA
1 AATTA
46847302 TAGAAATACC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.04
27 66 0.90
28 4 0.05
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:46847308 original size:27 final size:27
Alignment explanation
Indices: 46847242--46847367 Score: 89
Period size: 27 Copynumber: 4.6 Consensus size: 27
46847232 CTGGTTTGTG
* **
46847242 AAATTATCA-AAATACCCTCAATTTGTA
1 AAATTAT-AGAAATACCCTTAATTTACA
* *
46847269 AAATTACCA-AAATACCCCTAATTTACA
1 AAATTA-TAGAAATACCCTTAATTTACA
*
46847296 AAATTATAGAAATACCCTTGACTTT-CTAA
1 AAATTATAGAAATACCCTT-AATTTAC--A
* **
46847325 AAATTATAGAAATACCATTGGTTTACA
1 AAATTATAGAAATACCCTTAATTTACA
46847352 AAATTACT-GAAATACC
1 AAATTA-TAGAAATACC
46847368 TTTGGTTTGT
Statistics
Matches: 81, Mismatches: 11, Indels: 14
0.76 0.10 0.13
Matches are distributed among these distances:
26 1 0.01
27 52 0.64
28 8 0.10
29 20 0.25
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (27 bp):
AAATTATAGAAATACCCTTAATTTACA
Found at i:46847372 original size:27 final size:27
Alignment explanation
Indices: 46847290--46847375 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
46847280 ATACCCCTAA
* *
46847290 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCATTG-G
46847318 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCATTGG
*
46847346 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTACAAAATTA-TAGAAATACCATTGG
46847373 TTT
1 TTT
46847376 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 23 0.45
28 7 0.14
29 21 0.41
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCATTGG
Found at i:46847459 original size:27 final size:27
Alignment explanation
Indices: 46847416--46847489 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
46847406 AAATGACTAA
*
46847416 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
46847443 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
46847470 AATATCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
46847490 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:46847493 original size:27 final size:27
Alignment explanation
Indices: 46847429--46847493 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
46847419 ACCCCTAATA
*
46847429 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
46847456 GGTAAAGTGACCGTAATA-TCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
46847483 GGTAAAATGAC
1 GGTAAAATGAC
46847494 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:46848351 original size:24 final size:25
Alignment explanation
Indices: 46848275--46848344 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
46848265 AGGAAGTGCT
* * *
46848275 AAAAGGG-TTATGGCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTATCA
46848300 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
46848325 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
46848345 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:46848357 original size:24 final size:24
Alignment explanation
Indices: 46848300--46848371 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
46848290 CAGTTTACCG
46848300 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
46848324 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
46848348 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
46848372 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:46848613 original size:31 final size:31
Alignment explanation
Indices: 46848564--46848641 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
46848554 CGCTTACAGT
46848564 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46848594 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46848625 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
46848642 ATCTGTCGAG
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 11 0.23
31 36 0.77
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:46855757 original size:46 final size:48
Alignment explanation
Indices: 46855701--46855817 Score: 166
Period size: 46 Copynumber: 2.5 Consensus size: 48
46855691 TGATATGTGT
* * *
46855701 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATAGACAA
* *
46855747 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATAGACAA
*
46855795 GCTAGTGTAAGACCTGTCTGGGA
1 GCTAGTGTAAGACATGTCTGGGA
46855818 TATCGCGTCA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 39 0.62
47 1 0.02
48 23 0.37
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATAGACAA
Found at i:46860171 original size:15 final size:15
Alignment explanation
Indices: 46860145--46860187 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
46860135 ATAGTCTCGA
46860145 ATCTTGGGATTTCTCT
1 ATCTT-GGATTTCTCT
*
46860161 ATCTTGGATTTCTTT
1 ATCTTGGATTTCTCT
*
46860176 A-CTTGGTTTTCT
1 ATCTTGGATTTCT
46860188 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 10 0.40
15 10 0.40
16 5 0.20
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.56
Consensus pattern (15 bp):
ATCTTGGATTTCTCT
Found at i:46865173 original size:29 final size:29
Alignment explanation
Indices: 46865110--46865222 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
46865100 ATACATATGG
* * * **
46865110 CCCACTAGGCCC-AATCTCATTCACATGG
1 CCCATTAGGCCCAAATCACATTCATATAA
* *
46865138 CCTATTAGGCCCAAATCACATTCCTATAA
1 CCCATTAGGCCCAAATCACATTCATATAA
* **
46865167 CCCATTAAGCCCAAATCACATTCATATGG
1 CCCATTAGGCCCAAATCACATTCATATAA
46865196 CCCATTAGGCCCAAATCACATTCATAT
1 CCCATTAGGCCCAAATCACATTCATAT
46865223 TCATGCTTTC
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 10 0.14
29 61 0.86
ACGTcount: A:0.32, C:0.34, G:0.10, T:0.25
Consensus pattern (29 bp):
CCCATTAGGCCCAAATCACATTCATATAA
Found at i:46865457 original size:16 final size:16
Alignment explanation
Indices: 46865438--46865468 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46865428 AAACTTTCAG
*
46865438 CTTTTTGGCATTTCGA
1 CTTTTCGGCATTTCGA
46865454 CTTTTCGGCATTTCG
1 CTTTTCGGCATTTCG
46865469 GGATTTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.23, G:0.19, T:0.48
Consensus pattern (16 bp):
CTTTTCGGCATTTCGA
Found at i:46867168 original size:49 final size:49
Alignment explanation
Indices: 46867096--46867195 Score: 155
Period size: 49 Copynumber: 2.0 Consensus size: 49
46867086 ACGATTGGGC
** **
46867096 ATTTTTCATACGACTCGACTCACCCCGAGGTGGAGCGTATCATTTAGGT
1 ATTTTTCATAAAACTCGACTCACCCCGAGGCAGAGCGTATCATTTAGGT
*
46867145 ATTTTTCATAAAACTCGACTCACCCCGAGGCAGAGCGTATCATTTGGGT
1 ATTTTTCATAAAACTCGACTCACCCCGAGGCAGAGCGTATCATTTAGGT
46867194 AT
1 AT
46867196 CAGAGCTACA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (49 bp):
ATTTTTCATAAAACTCGACTCACCCCGAGGCAGAGCGTATCATTTAGGT
Found at i:46867311 original size:36 final size:35
Alignment explanation
Indices: 46867264--46867334 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
46867254 CTCATCAAGT
**
46867264 AAGTTTCAAAAAAATTTTGAAAAAAATTCAAAAAAA
1 AAGTTTCAAAAAAA-TACGAAAAAAATTCAAAAAAA
46867300 AAGTTTCAAAAAAATACGAAAAAAATTCAAAAAAA
1 AAGTTTCAAAAAAATACGAAAAAAATTCAAAAAAA
46867335 TGTTAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 19 0.58
36 14 0.42
ACGTcount: A:0.66, C:0.07, G:0.06, T:0.21
Consensus pattern (35 bp):
AAGTTTCAAAAAAATACGAAAAAAATTCAAAAAAA
Found at i:46867366 original size:11 final size:11
Alignment explanation
Indices: 46867271--46867368 Score: 65
Period size: 12 Copynumber: 8.6 Consensus size: 11
46867261 AGTAAGTTTC
46867271 AAAAAAATTTTG
1 AAAAAAA-TTTG
**
46867283 AAAAAAATTCAA
1 AAAAAAATT-TG
*
46867295 AAAAAAAGTTTC
1 AAAAAAA-TTTG
**
46867307 AAAAAAATACG
1 AAAAAAATTTG
*
46867318 AAAAAAA-TTC
1 AAAAAAATTTG
46867328 AAAAAAATGTT-
1 AAAAAAAT-TTG
*
46867339 AAAAAAATTCGG
1 AAAAAAATT-TG
*
46867351 GAAAAAATTTG
1 AAAAAAATTTG
46867362 AAAAAAA
1 AAAAAAA
46867369 AATTTGAACA
Statistics
Matches: 66, Mismatches: 14, Indels: 13
0.71 0.15 0.14
Matches are distributed among these distances:
10 8 0.12
11 25 0.38
12 31 0.47
13 2 0.03
ACGTcount: A:0.66, C:0.05, G:0.08, T:0.20
Consensus pattern (11 bp):
AAAAAAATTTG
Found at i:46867368 original size:13 final size:13
Alignment explanation
Indices: 46867352--46867376 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46867342 AAAATTCGGG
46867352 AAAAAATTTGAAA
1 AAAAAATTTGAAA
46867365 AAAAAATTTGAA
1 AAAAAATTTGAA
46867377 CATTGTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
AAAAAATTTGAAA
Found at i:46880719 original size:18 final size:18
Alignment explanation
Indices: 46880696--46880730 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
46880686 ACCGGCCAGC
46880696 ATGGGCTAAATGGGCCCG
1 ATGGGCTAAATGGGCCCG
46880714 ATGGGCTAAATGGGCCC
1 ATGGGCTAAATGGGCCC
46880731 ATAATAGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.17
Consensus pattern (18 bp):
ATGGGCTAAATGGGCCCG
Found at i:46880838 original size:29 final size:28
Alignment explanation
Indices: 46880797--46880876 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
46880787 GACTGTAAAA
*
46880797 GTGATTGGGCCTACTGGGCCATAT-AGAT
1 GTGATTGGGCCTAATGGGCCATATGA-AT
46880825 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAATGGGCCATATGAAT
* * *
46880854 GAGATTGGGCCTAGTAGGCCATA
1 GTGATTGGGCCTAATGGGCCATA
46880877 AGCATGTATG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 21 0.46
29 24 0.52
30 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAATGGGCCATATGAAT
Found at i:46885109 original size:29 final size:28
Alignment explanation
Indices: 46885076--46885170 Score: 111
Period size: 29 Copynumber: 3.3 Consensus size: 28
46885066 CACTAAGCCT
*
46885076 AATCATATTCATATGGCCCATTAGGCCCA
1 AATCACATT-ATATGGCCCATTAGGCCCA
* *
46885105 AATCACCTGTATATGGCTCATTAGGCCCA
1 AATCACAT-TATATGGCCCATTAGGCCCA
*
46885134 AATCACATTTATATGGCCCGTTAGGCCC-
1 AATCACA-TTATATGGCCCATTAGGCCCA
*
46885162 AGTCACATT
1 AATCACATT
46885171 CAAATTCATG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
27 2 0.04
28 6 0.11
29 47 0.82
30 2 0.04
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (28 bp):
AATCACATTATATGGCCCATTAGGCCCA
Found at i:46885412 original size:16 final size:16
Alignment explanation
Indices: 46885393--46885428 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
46885383 AACTTTCAGT
46885393 TTTTCGACATTTCGGC
1 TTTTCGACATTTCGGC
* *
46885409 TTTTCGGCATTTCGTC
1 TTTTCGACATTTCGGC
46885425 TTTT
1 TTTT
46885429 GCTGATACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.08, C:0.22, G:0.17, T:0.53
Consensus pattern (16 bp):
TTTTCGACATTTCGGC
Done.