Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 147 of 349
Found at i:46886728 original size:16 final size:17
Alignment explanation
Indices: 46886696--46886734 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
46886686 ACAAAGAAAG
46886696 TTTGGGATTTCAGGATT
1 TTTGGGATTTCAGGATT
46886713 TTTGGG-TTTC-GAGATT
1 TTTGGGATTTCAG-GATT
46886729 TTTGGG
1 TTTGGG
46886735 GCGTTACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.05
16 14 0.67
17 6 0.29
ACGTcount: A:0.13, C:0.05, G:0.33, T:0.49
Consensus pattern (17 bp):
TTTGGGATTTCAGGATT
Found at i:46889662 original size:28 final size:29
Alignment explanation
Indices: 46889631--46889734 Score: 124
Period size: 29 Copynumber: 3.7 Consensus size: 29
46889621 GGCCTACTAA
*
46889631 GCCC-AATCATATTCATATGGCCCATTAG
1 GCCCAAATCACATTCATATGGCCCATTAG
*
46889659 GCCCAAATCACCTGT-ATATGGCCCATTAG
1 GCCCAAATCACAT-TCATATGGCCCATTAG
* *
46889688 GCCCAAATCACATTTATATGGCCCGTTAG
1 GCCCAAATCACATTCATATGGCCCATTAG
* *
46889717 G-CCTAGTCACATTCATAT
1 GCCCAAATCACATTCATAT
46889735 TCATGCTCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
28 19 0.29
29 46 0.70
30 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
GCCCAAATCACATTCATATGGCCCATTAG
Found at i:46889717 original size:58 final size:57
Alignment explanation
Indices: 46889611--46889719 Score: 146
Period size: 58 Copynumber: 1.9 Consensus size: 57
46889601 AATTTCACAT
* * *
46889611 ACCTGTATTTGGCCTACTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCACTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
46889668 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTGTATATGGCCCACTAAGCCC-AATCACATTCATATGGCCCATTAGGCC
46889720 TAGTCACATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 20 0.45
58 24 0.55
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (57 bp):
ACCTGTATATGGCCCACTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:46889968 original size:16 final size:16
Alignment explanation
Indices: 46889944--46889986 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
46889934 GTAGCCAAAC
46889944 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
* *
46889960 TTTCAGCTTTTCGGCA
1 TTTCGGCTTTTCAGCA
46889976 TTTCGGCTTTT
1 TTTCGGCTTTT
46889987 ACCGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.09, C:0.23, G:0.19, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:46891553 original size:49 final size:49
Alignment explanation
Indices: 46891430--46891553 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
46891420 TTTGTGTTAG
* * *
46891430 TGTAAGACCTGTCTGGGACATGGAATCGACACCAACATATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACACCAACATATGAAAGCCAA
** * * * * *
46891479 TGTAAGACCTGTCTAAGACACGGCATCGGC-CTAGATATATGAAAGTCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGACACCA-ACATATGAAAGCCAA
46891528 TGTAAGACCTGTCTGGGACATGGCAT
1 TGTAAGACCTGTCTGGGACATGGCAT
46891554 TGACTTTAAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
48 2 0.03
49 59 0.97
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACACCAACATATGAAAGCCAA
Found at i:46897684 original size:46 final size:46
Alignment explanation
Indices: 46897632--46897807 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
46897622 TATTTGGACA
* *
46897632 TCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * *
46897678 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
*
46897725 TCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
46897771 CCCGAGCTCATTGAGTTGAGTCCAAATTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
46897808 GCAGGTTACA
Statistics
Matches: 102, Mismatches: 23, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
45 1 0.01
46 66 0.65
47 34 0.33
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:46904602 original size:17 final size:18
Alignment explanation
Indices: 46904565--46904603 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
46904555 ATTTTATGTA
46904565 ATATAAATCACATAATAT
1 ATATAAATCACATAATAT
* *
46904583 ATATAAAT-ATATATTAT
1 ATATAAATCACATAATAT
46904600 ATAT
1 ATAT
46904604 TATAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
ATATAAATCACATAATAT
Found at i:46908178 original size:13 final size:13
Alignment explanation
Indices: 46908160--46908185 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46908150 AAAATATATA
46908160 TATATTTAAAATT
1 TATATTTAAAATT
46908173 TATATTTAAAATT
1 TATATTTAAAATT
46908186 AGAGTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATTTAAAATT
Found at i:46908794 original size:12 final size:12
Alignment explanation
Indices: 46908758--46908800 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
46908748 TCGTACAATA
*
46908758 AAAAATTAAAAT
1 AAAAATTAAACT
*
46908770 TAAAATTAAAAACT
1 AAAAATT--AAACT
46908784 AAAAATTAAACT
1 AAAAATTAAACT
46908796 AAAAA
1 AAAAA
46908801 AATTACCTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 16 0.62
14 10 0.38
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAATTAAACT
Found at i:46908959 original size:30 final size:28
Alignment explanation
Indices: 46908913--46908968 Score: 85
Period size: 30 Copynumber: 1.9 Consensus size: 28
46908903 ATAATATAAG
*
46908913 AATTAAAAATTATTAAATTATTAATTTT
1 AATTAAAAATTATTAAATAATTAATTTT
46908941 AATTAAAAATAATATTAAATAATTAATT
1 AATTAAAAAT--TATTAAATAATTAATT
46908969 ATATAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 10 0.40
30 15 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
AATTAAAAATTATTAAATAATTAATTTT
Found at i:46911861 original size:23 final size:22
Alignment explanation
Indices: 46911810--46911861 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
46911800 CCTCGTCTTT
*
46911810 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
46911832 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
46911855 TTCTTTT
1 TTCTTTT
46911862 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:46911870 original size:12 final size:12
Alignment explanation
Indices: 46911819--46911873 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
46911809 TTTCTTTTGT
46911819 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
46911832 -TCATTTTC-TC
1 TTCTTTTTCAAC
46911842 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
46911855 TTCTTTTTCAAT
1 TTCTTTTTCAAC
46911867 TTCTTTT
1 TTCTTTT
46911874 CTGTTTCACA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.12
12 22 0.65
13 7 0.21
ACGTcount: A:0.13, C:0.24, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:46918967 original size:55 final size:53
Alignment explanation
Indices: 46918879--46919134 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
46918869 CATTAGGGTT
* *
46918879 TAAGGATATCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGG
* ** * ** *
46918934 TAAGGAAATAATGTAAGACCATGTCAAGACATGGCATTAATAAGTTACTACAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCT--AAGG
* * * *
46918989 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGG
1 -TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGG
* * *
46919042 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA--
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGG
* * * * *
46919092 -AAGGATACCACGTAAGACTATGACAAGTCATGGCAATGGTAAG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
46919135 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 28, Indels: 18
0.78 0.13 0.08
Matches are distributed among these distances:
49 39 0.23
52 6 0.04
53 42 0.25
54 11 0.07
55 65 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGG
Found at i:46919245 original size:23 final size:24
Alignment explanation
Indices: 46919208--46919252 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
46919198 AAGGTAAGGT
* *
46919208 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAAACAAGTTCATGCTAAA
46919231 AAGGTAAAACAAGTTCATGCTA
1 AAGGTAAAACAAGTTCATGCTA
46919253 GAAGAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (24 bp):
AAGGTAAAACAAGTTCATGCTAAA
Found at i:46919352 original size:16 final size:16
Alignment explanation
Indices: 46919331--46919361 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46919321 ATAAATTTGA
46919331 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
46919347 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
46919362 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:46925148 original size:57 final size:58
Alignment explanation
Indices: 46925050--46925169 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 58
46925040 GAGATAGTGT
* *
46925050 AAATGGAGAAATAGGAAACACTCGAAAATTATTATGGTTTTCTCC-AAAATAAAAATGA
1 AAATGGAGAAATAGGAAACACTCGAAAATGAATATGGTTTTCTCCAAAAAT-AAAATGA
* * * *
46925108 AAATGGAGAAATA-GAATCATTTGAAAATGAATGTGGTTTTCTCCAAAAATAAAATGA
1 AAATGGAGAAATAGGAAACACTCGAAAATGAATATGGTTTTCTCCAAAAATAAAATGA
46925165 AAATG
1 AAATG
46925170 AAAAATGAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 37 0.67
58 18 0.33
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.27
Consensus pattern (58 bp):
AAATGGAGAAATAGGAAACACTCGAAAATGAATATGGTTTTCTCCAAAAATAAAATGA
Found at i:46925176 original size:13 final size:13
Alignment explanation
Indices: 46925158--46925183 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46925148 CTCCAAAAAT
46925158 AAAATGAAAATGA
1 AAAATGAAAATGA
46925171 AAAATGAAAATGA
1 AAAATGAAAATGA
46925184 CCTGAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:46925190 original size:57 final size:57
Alignment explanation
Indices: 46925084--46925196 Score: 149
Period size: 57 Copynumber: 2.0 Consensus size: 57
46925074 AAAATTATTA
* * **
46925084 TGGTTTTCTCCAAAATAAAAATGAAAATGGAGAAATAGAATCATTTGAAAATGAATG
1 TGGTTTTCTCCAAAATAAAAATGAAAATGGAAAAATAAAATCACCTGAAAATGAATG
*
46925141 TGGTTTTCTCCAAAA-ATAAAATGAAAAT-GAAAAATGAAAATGACCTGAAAATGAAT
1 TGGTTTTCTCCAAAATA-AAAATGAAAATGGAAAAAT-AAAATCACCTGAAAATGAAT
46925197 TTATCTTTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
56 7 0.14
57 42 0.86
ACGTcount: A:0.50, C:0.08, G:0.16, T:0.27
Consensus pattern (57 bp):
TGGTTTTCTCCAAAATAAAAATGAAAATGGAAAAATAAAATCACCTGAAAATGAATG
Found at i:46926388 original size:13 final size:13
Alignment explanation
Indices: 46926370--46926396 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46926360 TTAGTGAGAA
46926370 AACGCATTTATTT
1 AACGCATTTATTT
46926383 AACGCATTTATTT
1 AACGCATTTATTT
46926396 A
1 A
46926397 TGAATGCGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.44
Consensus pattern (13 bp):
AACGCATTTATTT
Found at i:46930207 original size:58 final size:59
Alignment explanation
Indices: 46930136--46930247 Score: 190
Period size: 58 Copynumber: 1.9 Consensus size: 59
46930126 CCTCAATAAA
* * *
46930136 TTTTTTTAAAAATATGTCGTTATTTTTTCA-ATTGCATCATTTTTTATAGTAATAATAT
1 TTTTTTTAAAAATATGTCGTCATTATTTCACATTGCATAATTTTTTATAGTAATAATAT
46930194 TTTTTTTAAAAATATGTCGTCATTATTTCACATTGCATAATTTTTTATAGTAAT
1 TTTTTTTAAAAATATGTCGTCATTATTTCACATTGCATAATTTTTTATAGTAAT
46930248 TTATGTCGTC
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
58 28 0.56
59 22 0.44
ACGTcount: A:0.31, C:0.08, G:0.07, T:0.54
Consensus pattern (59 bp):
TTTTTTTAAAAATATGTCGTCATTATTTCACATTGCATAATTTTTTATAGTAATAATAT
Found at i:46931576 original size:364 final size:364
Alignment explanation
Indices: 46930907--46931607 Score: 1330
Period size: 364 Copynumber: 1.9 Consensus size: 364
46930897 TATATATATG
46930907 TATATATTTATGCATGTATCATATTACAAAAACAAAATTTTAATTACTTATACCTAATAAAACAT
1 TATATATTTATGCATGTATCATATTACAAAAACAAAATTTTAATTACTTATACCTAATAAAACAT
46930972 GCATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTT
66 GCATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTT
46931037 AATATTTTAATTTAATTTTAATAATGCATACTTTATTCTGATGAAGTATGTATTAGCAGATTCAG
131 AATATTTTAATTTAATTTTAATAATGCATACTTTATTCTGATGAAGTATGTATTAGCAGATTCAG
* *
46931102 TAATATCTAGTTGGACTGCCACGTAGGATTACCGTTAGGGAGATAACAGTACTTAACGGAAGAGT
196 TAATATCTAGTTAGACTGCCACGTAGGATTACCGTTAGGGAGATAACAGAACTTAACGGAAGAGT
*
46931167 GATCACTTCATAATAAAATAATAACATAAGTGACTAAAACGTAACATTTCAAACATAAGTGACGA
261 GATCACTTCATAATAAAATAATAACATAACTGACTAAAACGTAACATTTCAAACATAAGTGACGA
46931232 AAATGTAACATGTATTAGCAGATTCACTATATGATTATA
326 AAATGTAACATGTATTAGCAGATTCACTATATGATTATA
46931271 TATATATTTATGCATGTATCATATTACAAAAACAAAATTTTAATTACTTATACCTAATAAAACAT
1 TATATATTTATGCATGTATCATATTACAAAAACAAAATTTTAATTACTTATACCTAATAAAACAT
*
46931336 GCATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATATTTTTATTTCTTATTT
66 GCATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTT
46931401 AATATTTTAATTTAATTTTAATAATGCATACTTTATTCTGATGAAGTATGTATTAGCAGATTCAG
131 AATATTTTAATTTAATTTTAATAATGCATACTTTATTCTGATGAAGTATGTATTAGCAGATTCAG
* *
46931466 TAATATCTAGTTAGACTGTCACGTAGGATTACTGTTAGGGAGATAACAGAACTTAACGGAAGAGT
196 TAATATCTAGTTAGACTGCCACGTAGGATTACCGTTAGGGAGATAACAGAACTTAACGGAAGAGT
* *
46931531 GATCACTTCGTAATAAAATAATAACATAACTGACTAAAACGTAACATTTCAAACATAAGTGACTA
261 GATCACTTCATAATAAAATAATAACATAACTGACTAAAACGTAACATTTCAAACATAAGTGACGA
46931596 AAATGTAACATG
326 AAATGTAACATG
46931608 AGTCAAACAA
Statistics
Matches: 329, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
364 329 1.00
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.37
Consensus pattern (364 bp):
TATATATTTATGCATGTATCATATTACAAAAACAAAATTTTAATTACTTATACCTAATAAAACAT
GCATCTCATTACAATAATAGTTATTTTCCAAATAACATATTGTTTTATAATTTTATTTCTTATTT
AATATTTTAATTTAATTTTAATAATGCATACTTTATTCTGATGAAGTATGTATTAGCAGATTCAG
TAATATCTAGTTAGACTGCCACGTAGGATTACCGTTAGGGAGATAACAGAACTTAACGGAAGAGT
GATCACTTCATAATAAAATAATAACATAACTGACTAAAACGTAACATTTCAAACATAAGTGACGA
AAATGTAACATGTATTAGCAGATTCACTATATGATTATA
Found at i:46931622 original size:31 final size:29
Alignment explanation
Indices: 46931561--46931626 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
46931551 ATAACATAAC
* *
46931561 TGACTAAAACGTAACATTTCAAACATAAG
1 TGACTAAAACGTAACATGTCAAACAAAAG
*
46931590 TGACTAAAATGTAACATGAGTCAAACAAAAG
1 TGACTAAAACGTAACAT--GTCAAACAAAAG
46931621 TGACTA
1 TGACTA
46931627 TTTTTATAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.48, C:0.15, G:0.14, T:0.23
Consensus pattern (29 bp):
TGACTAAAACGTAACATGTCAAACAAAAG
Found at i:46932220 original size:28 final size:27
Alignment explanation
Indices: 46932184--46932238 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
46932174 TTTTATCATG
* *
46932184 ATTTGAATATTAATATTAATATATTTTA
1 ATTTAAATAATAATATTAATA-ATTTTA
*
46932212 ATTTAAATAATATTATTAATAATTTTA
1 ATTTAAATAATAATATTAATAATTTTA
46932239 GGTACATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (27 bp):
ATTTAAATAATAATATTAATAATTTTA
Found at i:46932519 original size:19 final size:19
Alignment explanation
Indices: 46932495--46932534 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
46932485 TATGCTCAAT
*
46932495 TTTTATTATTCGATTTTTA
1 TTTTATTATTAGATTTTTA
*
46932514 TTTTATTATTATATTTTTA
1 TTTTATTATTAGATTTTTA
46932533 TT
1 TT
46932535 ATTTGAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTTATTATTAGATTTTTA
Found at i:46932901 original size:162 final size:161
Alignment explanation
Indices: 46932653--46932955 Score: 452
Period size: 162 Copynumber: 1.9 Consensus size: 161
46932643 ATTAGACGTT
* * *
46932653 AACTCAATTATAAATTTATAAAAAAATCTTTCGTATTTAAAATGAATTATATTATTCAATGGTAC
1 AACTCAATTACAAATTTACAAAAAAAACTTTCGTATTTAAAATGAATTATATTATTCAATGGTAC
*
46932718 TTTAGTTAATTTAATTAAAAAATAAAAATATATGTATTAT-AAATTTGAACCTAT-GTCAATTAC
66 TTTAGTTAATTTAATTAAAAAATAAAAATATATGTATTATGAAATTTGAACCCATAG-CAATTAC
*
46932781 ATTGAAAAAAATATACGAGTTAATTAGGCACC
130 ATTAAAAAAAATATACGAGTTAATTAGGCACC
* *
46932813 AACTCAATTACGAATTTACAAAAAAAGACTTTTCGTATTTAAAAT-AAGTTATATTATTCGA-GA
1 AACTCAATTACAAATTTACAAAAAAA-AC-TTTCGTATTTAAAATGAA-TTATATTATTCAATG-
* *
46932876 GTACTTTAGTTACTTTAATTAAAAAATAAAAATATATGTATTATGAGATTTGAACCCATAGCAAT
62 GTACTTTAGTTAATTTAATTAAAAAATAAAAATATATGTATTATGAAATTTGAACCCATAGCAAT
46932941 TACATTAAAAAAAAT
127 TACATTAAAAAAAAT
46932956 TTAAATTTAT
Statistics
Matches: 128, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
160 23 0.18
161 4 0.03
162 70 0.55
163 30 0.23
164 1 0.01
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (161 bp):
AACTCAATTACAAATTTACAAAAAAAACTTTCGTATTTAAAATGAATTATATTATTCAATGGTAC
TTTAGTTAATTTAATTAAAAAATAAAAATATATGTATTATGAAATTTGAACCCATAGCAATTACA
TTAAAAAAAATATACGAGTTAATTAGGCACC
Found at i:46939461 original size:21 final size:20
Alignment explanation
Indices: 46939423--46939481 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
46939413 AGCTTCTCGA
*
46939423 AGAAGAAG-AGAAGGAAAAGCG
1 AGAAGAAGAAGAA-CAAAAG-G
*
46939444 TGAAGAAGAAGAACAAAAGG
1 AGAAGAAGAAGAACAAAAGG
*
46939464 AGAGGAA-AAGAACAAAAG
1 AGAAGAAGAAGAACAAAAG
46939482 AACGAGAGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 11 0.33
20 6 0.18
21 12 0.36
22 4 0.12
ACGTcount: A:0.61, C:0.05, G:0.32, T:0.02
Consensus pattern (20 bp):
AGAAGAAGAAGAACAAAAGG
Found at i:46939488 original size:22 final size:19
Alignment explanation
Indices: 46939447--46939495 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 19
46939437 AAAAGCGTGA
*
46939447 AGAAGAAGAACAAAAGGAG
1 AGAAAAAGAACAAAAGGAG
*
46939466 AGGAAAAGAACAAAAGAACGAG
1 AGAAAAAGAACAAAAG---GAG
46939488 AGAAAAAG
1 AGAAAAAG
46939496 CTCAGGAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 14 0.58
22 10 0.42
ACGTcount: A:0.65, C:0.06, G:0.29, T:0.00
Consensus pattern (19 bp):
AGAAAAAGAACAAAAGGAG
Found at i:46941049 original size:129 final size:129
Alignment explanation
Indices: 46940810--46941066 Score: 338
Period size: 129 Copynumber: 2.0 Consensus size: 129
46940800 TCAACGATCA
* * * *
46940810 GATGGGAGAGATACTTCAAGCTGCGTTCAAAATGGTTTCTCCGAGTGTCAGGTGAAGGGAATTGA
1 GATGGGAGAGATACTTCAAGCTGCATTCAAAATGGCTTCTCCGAGTGTCAGGTGAAAGGAATCGA
* * *
46940875 TAAAAAAGAGGATGTCAATGGAGGCATTGCTTTGGAAAGCGAGGCATTGTTTGGACATTCACCT
66 AAAAAAACAGGATGTCAATGGAGGCATTGCTTTGGAAAGCCAGGCATTGTTTGGACATTCACCT
* * * *
46940939 GATGGGAGAGATTCTTC-AGTCTGCATTCAAGATGGCTTCTCTGAGTGTCAGGTTAAAGGAATCG
1 GATGGGAGAGATACTTCAAG-CTGCATTCAAAATGGCTTCTCCGAGTGTCAGGTGAAAGGAATCG
* ** * *
46941003 AAAAAAAACAGGATGTCAATGGGGGGGTTGCTTTGGTATA-CCAGGCATTGTTTGGGCATTCACC
65 AAAAAAAACAGGATGTCAATGGAGGCATTGCTTTGG-AAAGCCAGGCATTGTTTGGACATTCACC
46941067 AGACAGTAGA
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
128 2 0.02
129 106 0.96
130 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (129 bp):
GATGGGAGAGATACTTCAAGCTGCATTCAAAATGGCTTCTCCGAGTGTCAGGTGAAAGGAATCGA
AAAAAAACAGGATGTCAATGGAGGCATTGCTTTGGAAAGCCAGGCATTGTTTGGACATTCACCT
Found at i:46945076 original size:17 final size:19
Alignment explanation
Indices: 46945043--46945077 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
46945033 ATTATTTGGA
46945043 TATTATATAACTTTTGTTT
1 TATTATATAACTTTTGTTT
46945062 TATTAT-TAA-TTTTGTT
1 TATTATATAACTTTTGTT
46945078 ACTATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (19 bp):
TATTATATAACTTTTGTTT
Found at i:46945538 original size:22 final size:23
Alignment explanation
Indices: 46945493--46945549 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
46945483 AAAAAATATT
*
46945493 TTTTATTTTTTCTTCTTCTTCCC
1 TTTTATTTTTTCTTCTTCTCCCC
46945516 TTTTATTATTTT-TT-TTCTCCCC
1 TTTTATT-TTTTCTTCTTCTCCCC
**
46945538 TTCAATTTTTTC
1 TTTTATTTTTTC
46945550 ATGCTCTCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 4 0.14
22 12 0.41
23 9 0.31
24 4 0.14
ACGTcount: A:0.09, C:0.23, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTTATTTTTTCTTCTTCTCCCC
Found at i:46945624 original size:17 final size:19
Alignment explanation
Indices: 46945602--46945637 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
46945592 CTTTTGTTTT
46945602 TCCTTT-TTT-TTCTTCTC
1 TCCTTTCTTTATTCTTCTC
46945619 TCCTTTCTTTATTCTTCTC
1 TCCTTTCTTTATTCTTCTC
46945638 CCAAACTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.67
Consensus pattern (19 bp):
TCCTTTCTTTATTCTTCTC
Found at i:46947178 original size:50 final size:49
Alignment explanation
Indices: 46947060--46947189 Score: 197
Period size: 50 Copynumber: 2.6 Consensus size: 49
46947050 TTGGTACCCA
* * **
46947060 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTAATACACG
* *
46947109 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAATCTAATACACG
46947159 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
46947190 TCACAGTTTT
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
49 31 0.42
50 43 0.58
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTAATACACG
Found at i:46947233 original size:101 final size:99
Alignment explanation
Indices: 46947060--46947246 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
46947050 TTGGTACCCA
* * *
46947060 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCGGGTACACATAGTAGCCTGCACTTA
*
46947125 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * *
46947159 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACA---ATCGGGTACACATAGTAGCCTGCAC
*
46947223 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
46947247 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 3 0.04
99 30 0.39
101 43 0.57
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:46948961 original size:15 final size:15
Alignment explanation
Indices: 46948905--46948969 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
46948895 TAAAGATAAC
*
46948905 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
46948919 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
46948934 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
46948949 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
46948964 AAGAAA
1 AAGAAA
46948970 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:46948971 original size:30 final size:31
Alignment explanation
Indices: 46948905--46948973 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
46948895 TAAAGATAAC
*
46948905 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
46948935 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
46948964 AAGAAACCCA
1 AAGAAACCCA
46948974 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:46948991 original size:17 final size:17
Alignment explanation
Indices: 46948969--46949003 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
46948959 GAATAAAGAA
46948969 ACCCAAGATACGATACT
1 ACCCAAGATACGATACT
46948986 ACCCAAGATACGATACT
1 ACCCAAGATACGATACT
46949003 A
1 A
46949004 TGTCGGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.29, G:0.11, T:0.17
Consensus pattern (17 bp):
ACCCAAGATACGATACT
Found at i:46952042 original size:48 final size:48
Alignment explanation
Indices: 46951971--46952164 Score: 210
Period size: 50 Copynumber: 3.9 Consensus size: 48
46951961 AGCCGAAGCT
* *
46951971 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAC
* * *
46952019 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAAC
** * * *
46952069 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-AC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAC
* * *
46952116 AGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 A----TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
46952165 TCACAATAGA
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
47 2 0.02
48 40 0.33
49 1 0.01
50 44 0.36
51 36 0.29
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (48 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAC
Found at i:46952147 original size:101 final size:98
Alignment explanation
Indices: 46951983--46952168 Score: 257
Period size: 101 Copynumber: 1.9 Consensus size: 98
46951973 CTGGTACGCA
* * *
46951983 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACATCTGGTACACGTAGTAGCCTGCACTTAG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACATCGGGTACACATAGTAGCCTGCACTTAG
*
46952048 TACTACACACGTGACCTCACCATCTAATACACG
66 TACTACACACGCGACCTCACCATCTAATACACG
* * *
46952081 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACA----TCGGGTACACATAGTAGCCTGCAC
*
46952145 TTAGTACTACACATGCGACCTCAC
62 TTAGTACTACACACGCGACCTCAC
46952169 AATAGATCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
97 3 0.04
98 30 0.39
101 43 0.57
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACATCGGGTACACATAGTAGCCTGCACTTAG
TACTACACACGCGACCTCACCATCTAATACACG
Found at i:46959985 original size:47 final size:47
Alignment explanation
Indices: 46959818--46960306 Score: 867
Period size: 47 Copynumber: 10.4 Consensus size: 47
46959808 TTCAGCCAAG
46959818 AAGTGTATATATGTGATAAGG--TAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
46959863 AAGTGTATA-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
46959909 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
46959958 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
46960005 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
46960052 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
46960099 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
46960146 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
46960193 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* * * * * * *
46960240 AAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
46960287 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
46960307 TCCCGAAGGG
Statistics
Matches: 429, Mismatches: 10, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
44 11 0.03
45 9 0.02
46 29 0.07
47 334 0.78
48 4 0.01
49 42 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
Found at i:46960481 original size:37 final size:37
Alignment explanation
Indices: 46960425--46960503 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46960415 CCGAGCTCTA
* * *
46960425 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
46960462 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46960499 AAGAC
1 AAGAC
46960504 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46961954 original size:40 final size:40
Alignment explanation
Indices: 46961711--46961942 Score: 338
Period size: 40 Copynumber: 5.8 Consensus size: 40
46961701 GAGAATTGAG
*
46961711 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
46961751 AGTGATATATCCGGGCTAAGTATCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46961791 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
46961831 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTCCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
46961871 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
46961911 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
46961943 ATCATGCTGG
Statistics
Matches: 169, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 169 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:46965498 original size:47 final size:47
Alignment explanation
Indices: 46965445--46965893 Score: 749
Period size: 47 Copynumber: 9.5 Consensus size: 47
46965435 ATTCAGCCAA
46965445 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
46965492 GAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
46965539 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
46965588 GAAAGTGTATA-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
46965634 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
46965683 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
46965730 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
46965778 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
46965825 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
46965872 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
46965894 TCTCGAAGGG
Statistics
Matches: 382, Mismatches: 12, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
46 77 0.20
47 167 0.44
48 15 0.04
49 123 0.32
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:46965581 original size:22 final size:22
Alignment explanation
Indices: 46965553--46965627 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
46965543 GTGTATATAT
46965553 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ****
46965575 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCTAA-TGGCCG
46965599 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
46965621 ATGTGAT
1 ATGTGAT
46965628 GAATGTGAAA
Statistics
Matches: 35, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
22 16 0.46
23 10 0.29
24 9 0.26
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:46965713 original size:142 final size:141
Alignment explanation
Indices: 46965445--46965893 Score: 749
Period size: 142 Copynumber: 3.2 Consensus size: 141
46965435 ATTCAGCCAA
*
46965445 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46965510 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
46965575 ATGTGATGAATGT
129 ATGTGATGAATGT
46965588 GAAAGTGTATA-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGT
46965652 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46965717 ATGTGATGAATGT
129 ATGTGATGAATGT
46965730 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATATATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
* * * * *
46965794 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
64 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
46965859 ACGTGATGGATGT
129 ATGTGATGAATGT
*
46965872 GAAAGTGTATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
46965894 TCTCGAAGGG
Statistics
Matches: 292, Mismatches: 9, Indels: 13
0.93 0.03 0.04
Matches are distributed among these distances:
140 14 0.05
142 176 0.60
143 11 0.04
144 61 0.21
145 30 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGT
Found at i:46965767 original size:191 final size:189
Alignment explanation
Indices: 46965445--46965893 Score: 783
Period size: 191 Copynumber: 2.4 Consensus size: 189
46965435 ATTCAGCCAA
*
46965445 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGA
46965510 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
46965575 ATGTGATGAATGTGAAAGTGTATA-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 ATGTGATG-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
46965634 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGT
46965699 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
64 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
46965764 CGATGTGATGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
129 CGATGTGATGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
46965825 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGA
46965890 TAAG
66 TAAG
46965894 TCTCGAAGGG
Statistics
Matches: 248, Mismatches: 9, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
189 61 0.25
190 15 0.06
191 172 0.69
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (189 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:46966068 original size:37 final size:37
Alignment explanation
Indices: 46966012--46966090 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46966002 CCGAGCTCTA
* * *
46966012 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
46966049 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46966086 AAGAC
1 AAGAC
46966091 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46968520 original size:69 final size:69
Alignment explanation
Indices: 46968409--46968545 Score: 274
Period size: 69 Copynumber: 2.0 Consensus size: 69
46968399 CAAATGCTTC
46968409 AATTGATAGTGTGATAGATATCTCTGACTTCCGTTGACCCTTGAGCTAGATAGGCGACACTATAA
1 AATTGATAGTGTGATAGATATCTCTGACTTCCGTTGACCCTTGAGCTAGATAGGCGACACTATAA
46968474 GAAG
66 GAAG
46968478 AATTGATAGTGTGATAGATATCTCTGACTTCCGTTGACCCTTGAGCTAGATAGGCGACACTATAA
1 AATTGATAGTGTGATAGATATCTCTGACTTCCGTTGACCCTTGAGCTAGATAGGCGACACTATAA
46968543 GAA
66 GAA
46968546 AAATGAAAGG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (69 bp):
AATTGATAGTGTGATAGATATCTCTGACTTCCGTTGACCCTTGAGCTAGATAGGCGACACTATAA
GAAG
Found at i:46968925 original size:47 final size:48
Alignment explanation
Indices: 46968852--46969071 Score: 210
Period size: 47 Copynumber: 4.7 Consensus size: 48
46968842 GTAAGGAGCT
*
46968852 GATGCCATGTCCCAGACACGGTCTTACACTAGCTCAT-ATCTCATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCATGTC
* * *
46968899 GGTGCCATGTCCCAGACATGGCCTTACACT-GACT-ATCATCTCGTAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCATCTCAT-GTC
* * *
46968947 GATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTCGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-ATGTC
* * *
46968993 GATGCTATGTCCCAGACATGGTCTTACACTGGCTC-TCA--TAATGTTGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCATG-T-C
*
46969040 TGATG-CATGTCCCAGACA-CGTCTTACACTAGC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGC
46969072 GCACAATGAC
Statistics
Matches: 143, Mismatches: 19, Indels: 23
0.77 0.10 0.12
Matches are distributed among these distances:
45 3 0.02
46 38 0.27
47 77 0.54
48 25 0.17
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCATGTC
Found at i:46969019 original size:94 final size:93
Alignment explanation
Indices: 46968848--46969071 Score: 274
Period size: 94 Copynumber: 2.4 Consensus size: 93
46968838 GTGGGTAAGG
* * *
46968848 AGCTGATGCCATGTCCCAGACACGGTCTTACACTAGCTCATATCTCATGTCGGTGCCATGTCCCA
1 AGCTGATG-CATGTCCCAGACAC-GTCTTACACTAGCACATATCTCATGCCGATGCCATGTCCCA
*
46968913 GACATGGCCTTACACTGACTATCAT-CTCGT
64 GACATGGCCTTACACTGACTATCATAAT-GT
* * *
46968943 AG-TCGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCGTCTCGATGCCGATGCTATGTCCC
1 AGCT-GATGCATGTCCCAGACACGTCTTACACTAGCACAT-ATCTC-ATGCCGATGCCATGTCCC
* * *
46969006 AGACATGGTCTTACACTGGCTCTCATAATGT
63 AGACATGGCCTTACACTGACTATCATAATGT
*
46969037 TGCTGATGCATGTCCCAGACACGTCTTACACTAGC
1 AGCTGATGCATGTCCCAGACACGTCTTACACTAGC
46969072 GCACAATGAC
Statistics
Matches: 112, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
92 1 0.01
93 18 0.16
94 85 0.76
95 8 0.07
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (93 bp):
AGCTGATGCATGTCCCAGACACGTCTTACACTAGCACATATCTCATGCCGATGCCATGTCCCAGA
CATGGCCTTACACTGACTATCATAATGT
Found at i:46971194 original size:40 final size:40
Alignment explanation
Indices: 46971149--46971340 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
46971139 ATAACCACAA
* * *
46971149 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
46971189 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
46971229 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
46971269 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
46971309 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
46971341 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:46971233 original size:80 final size:80
Alignment explanation
Indices: 46971120--46971339 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
46971110 ACCCAAGTTT
* * * * * * * * *
46971120 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
46971183 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
46971199 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
46971263 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
46971279 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
46971340 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:46973418 original size:59 final size:59
Alignment explanation
Indices: 46973352--46973464 Score: 190
Period size: 59 Copynumber: 1.9 Consensus size: 59
46973342 TCAACAACTC
*
46973352 AATTTTGACCATTTCTCTTTCTTATGTCCCCTACGGCTGGCTAGCATCCTCTCTCACTT
1 AATTTTGAACATTTCTCTTTCTTATGTCCCCTACGGCTGGCTAGCATCCTCTCTCACTT
* * *
46973411 AATTTTGAACATTTCTCTTTCTTCTGTCCCCTATGGTTGGCTAGCATCCTCTCT
1 AATTTTGAACATTTCTCTTTCTTATGTCCCCTACGGCTGGCTAGCATCCTCTCT
46973465 AAGGTCTATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.15, C:0.30, G:0.12, T:0.42
Consensus pattern (59 bp):
AATTTTGAACATTTCTCTTTCTTATGTCCCCTACGGCTGGCTAGCATCCTCTCTCACTT
Found at i:46980029 original size:46 final size:47
Alignment explanation
Indices: 46979835--46980064 Score: 231
Period size: 47 Copynumber: 4.9 Consensus size: 47
46979825 GTGGGTAAGG
*
46979835 TGCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCGT-ATCTC-A
1 TGCCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTC-TCATCTCGA
* * *
46979882 TGTCAATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCG-
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCGA
* * * *
46979929 TAGCCGATG-CATGTCCCAAACATGTCTTTCACTGGCT-TACATCTTGA
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGA
* * * *
46979976 GGTCGATG-CTTGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGA
1 TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGA
*
46980022 TGCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCAT
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCAT
46980065 AATGTGGCTA
Statistics
Matches: 150, Mismatches: 22, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 61 0.41
47 65 0.43
48 23 0.15
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGA
Found at i:46983628 original size:20 final size:21
Alignment explanation
Indices: 46983585--46983630 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
46983575 ACAATTTTAT
46983585 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
46983605 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
46983624 TATGGGC
1 TATGGGC
46983631 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:46983723 original size:60 final size:61
Alignment explanation
Indices: 46983625--46983785 Score: 152
Period size: 60 Copynumber: 2.7 Consensus size: 61
46983615 CTGTGTTAAT
* * * * *
46983625 ATGGGCAAGGCCCAATATA-TCTCGA-CTTGTAATAGGGCTACGACCTAGATTGATACTGAC
1 ATGGGCTAGGCCCAGTATACTCT-GATATTGTAATAGGGCTACGACCCAGATTAATACTGAC
* * * * *
46983685 ATGGGCTAGGCCCAGTATACTCTGATATTGTAA-GGGGCTATGGCCCAGATTAATATTGAT
1 ATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTACGACCCAGATTAATACTGAC
*
46983745 ATGGGCTAAGGCCCAGT-TAACTCTGAT-TTCTGAATAGGGCT
1 ATGGGCT-AGGCCCAGTAT-ACTCTGATATTGT-AATAGGGCT
46983786 TAGGCCTAGT
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
60 50 0.60
61 28 0.34
62 5 0.06
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (61 bp):
ATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTACGACCCAGATTAATACTGAC
Found at i:46986732 original size:129 final size:128
Alignment explanation
Indices: 46986474--46986813 Score: 407
Period size: 129 Copynumber: 2.6 Consensus size: 128
46986464 GTCCAACGAA
* * * * * * *
46986474 AAATCGAAACCCAGCAAGGTAGGGTATGATTCCCCGAATTTCCAAACTTTGAACATTGCCTT-AT
1 AAATCGCAACCCAGCACGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCAT
* ** * ** * *
46986538 TTTAGAATTTAGAGAA-CACAAGTGAAATTCTAAAGGGATATTCGATTATTTTGAACAAACAGG
66 TTAAGAATTTTTA-AATGACAAGTGAAAAACCAAAGGAATATTCGATTATTTTGAACAAACAGG
* *
46986601 AAATCGCAACCCAGCACGGTAGGGCACGATTCCCCGAATTGCCTAACATCGAACATTACCTTCAT
1 AAATCGCAACCCAGCACGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCAT
* *
46986666 TTAAAGAATTTTTAAATGA-ATAGTGAAAAACCAAAGGAATATTCGATTATTTTGAACAAGCGGG
66 TT-AAGAATTTTTAAATGACA-AGTGAAAAACCAAAGGAATATTCGATTATTTTGAACAAACAGG
* * *
46986730 AAATTGCAACCTAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCGT
1 AAATCGCAACCCAGCACGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTC--
*
46986795 TTTTAAGAATTTTTAAATG
64 ATTTAAGAATTTTTAAATG
46986814 GATAATTATA
Statistics
Matches: 182, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
127 53 0.29
128 7 0.04
129 104 0.57
130 15 0.08
131 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (128 bp):
AAATCGCAACCCAGCACGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTCAT
TTAAGAATTTTTAAATGACAAGTGAAAAACCAAAGGAATATTCGATTATTTTGAACAAACAGG
Found at i:46989647 original size:45 final size:45
Alignment explanation
Indices: 46989515--46989647 Score: 128
Period size: 45 Copynumber: 3.0 Consensus size: 45
46989505 CATTTTAATC
* ** ** *
46989515 CTACTCTACTGCAACTTCAAAGAGATAAGGAT-TGTGA-CTTCAAT
1 CTACTCCACTGCAACTTCAGGGAGATAA-GATCTGCAATCTTCAGT
* * *
46989559 CTACTCCACTGCAACTTCAGGGGGATACGATCTGCTATCTTCAGT
1 CTACTCCACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCAGT
* *
46989604 CTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGCAATTTTCAG
1 CTACTCCACTGCAACTTCAGGGAGATAAGATC-TGCAATCTTCAG
46989648 CCTGTTACCT
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
43 3 0.04
44 27 0.37
45 43 0.59
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (45 bp):
CTACTCCACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCAGT
Found at i:46989700 original size:89 final size:87
Alignment explanation
Indices: 46989603--46989882 Score: 323
Period size: 89 Copynumber: 3.3 Consensus size: 87
46989593 CTATCTTCAG
* *
46989603 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCAATTTTCAGCCTGTTACCTTACTACTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCAATCTTCAGCCTGTTACCCTACTACTTAA
*
46989668 GGGATTAAGGCTTATTGTCTTCGA
66 GGG-TTAAGGCTTGTT-TCTTCGA
* * **
46989692 TTTACTCCACTGCAACTTCAGGGAGATAAGA-TCTAAAATCTTCAGCCTGTTACCCTACTACTTA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCAATCTTCAGCCTGTTACCCTACTACTTA
*
46989756 GGGGGTTAAGGCTTGTTTTCTTCGA
65 -AGGGTTAAGGCTTG-TTTCTTCGA
*
46989781 TCTGCTCCACTGGAGA---C---GAGAT----C-TGCAATCTTCAGCCTGTTACCCTACTACTTA
1 TCTGCTCCACTGCA-ACTTCAGGGAGATAAGACTTGCAATCTTCAGCCTGTTACCCTACTACTTA
*
46989835 GAGGGTTAAGGCTTGCTTCTTCGA
65 -AGGGTTAAGGCTTGTTTCTTCGA
46989859 TCTGCTCCACTGCAACTTCAGGGA
1 TCTGCTCCACTGCAACTTCAGGGA
46989883 TTCAAGATCT
Statistics
Matches: 164, Mismatches: 16, Indels: 28
0.79 0.08 0.13
Matches are distributed among these distances:
77 1 0.01
78 21 0.13
79 43 0.26
80 1 0.01
83 2 0.01
84 5 0.03
87 1 0.01
88 1 0.01
89 83 0.51
90 6 0.04
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (87 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCAATCTTCAGCCTGTTACCCTACTACTTAA
GGGTTAAGGCTTGTTTCTTCGA
Found at i:46992987 original size:79 final size:81
Alignment explanation
Indices: 46992819--46993003 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
46992809 GCTACTTGTT
*
46992819 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
46992883 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* * * **
46992900 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTTGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
46992962 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
46992979 CAAAGCCTTCGGGACATAGCCCGGA
1 CAAAGCCTTCGGGACATAGCCCGGA
46993004 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCAC
Found at i:46993003 original size:40 final size:40
Alignment explanation
Indices: 46992819--46993003 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
46992809 GCTACTTGTT
* *
46992819 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
46992859 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
46992899 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
46992938 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
*
46992979 CAAA-GCCTTCGGGACATAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46993004 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:46994204 original size:56 final size:56
Alignment explanation
Indices: 46994137--46994256 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
46994127 TATTAGTTTA
46994137 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
46994193 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
46994249 TTGCCCAT
1 TTGCCCAT
46994257 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:47000859 original size:39 final size:40
Alignment explanation
Indices: 47000745--47000929 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
47000735 GCTACTCGTT
*
47000745 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
47000785 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
47000825 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
47000864 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
47000905 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47000930 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:47000889 original size:79 final size:81
Alignment explanation
Indices: 47000712--47000929 Score: 227
Period size: 79 Copynumber: 2.7 Consensus size: 81
47000702 AAATCACGTA
* * * * * * *
47000712 CCTTCGGAATTTAA-CCAGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTAT
1 CCTTCGGGACTTAACCCGGATATAG-TAACTCGTACCAATGCCTTCGGGACTTAGCCCGGAATAT
47000774 AGTAACTCGCACAAATG
65 AGTAACTCGCACAAATG
*
47000791 CCTTCGGGACTTAACCCGGATTTAGTAACTCGTACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGTACCAATGCCTTCGGGACTTAGCCCGGAATATA
47000854 GTAACTCGCACAAATG
66 GTAACTCGCACAAATG
** * * *
47000870 CCTTC-GGATCTTAGTCCGGATATGGTCACT--TAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTAACTCGTA-C-CAATGCCTTCGGGACTTAGCCCGGA
47000930 CATCATTCGA
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
77 2 0.02
78 4 0.03
79 73 0.62
80 39 0.33
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTCGTACCAATGCCTTCGGGACTTAGCCCGGAATATA
GTAACTCGCACAAATG
Found at i:47002134 original size:56 final size:56
Alignment explanation
Indices: 47002067--47002186 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
47002057 TATTAGTTTA
*
47002067 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGCT
*
47002123 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGCT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGCT
47002179 TTGCCCAT
1 TTGCCCAT
47002187 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGCT
Found at i:47009827 original size:129 final size:130
Alignment explanation
Indices: 47009677--47009921 Score: 357
Period size: 129 Copynumber: 1.9 Consensus size: 130
47009667 GTGAAATTCT
* * * *
47009677 AAAGGGATATTCGATTATTTTGAACAAATAGGAAATCGCAACCCAACACGGTAGGACACGATTCC
1 AAAGGAATATTCAATTATTTTGAACAAACAGGAAATCGCAACCCAACACGATAGGACACGATTCC
* * *
47009742 CCGAATTGCCTAACATCGAACTTTACCTTCG-TTTAAAGAATTTTTAAATGAATAGTGAAAAACC
66 CCGAATTGCCAAACATCCAACATTACCTTCGTTTTAAAGAATTTTTAAATGAATAGTGAAAAACC
* * * * *
47009806 AAAGGAATATTCAATTATTTTGAACAAGCGGGAAATTGCAACCCATCACGATAGGGCACGATTCC
1 AAAGGAATATTCAATTATTTTGAACAAACAGGAAATCGCAACCCAACACGATAGGACACGATTCC
* *
47009871 CCGAATTGCCAAACATCCAACATTGCCTTCGTTTTTAAGAATTTTTAAATG
66 CCGAATTGCCAAACATCCAACATTACCTTCGTTTTAAAGAATTTTTAAATG
47009922 GATAATTATA
Statistics
Matches: 101, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
129 83 0.82
130 18 0.18
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (130 bp):
AAAGGAATATTCAATTATTTTGAACAAACAGGAAATCGCAACCCAACACGATAGGACACGATTCC
CCGAATTGCCAAACATCCAACATTACCTTCGTTTTAAAGAATTTTTAAATGAATAGTGAAAAACC
Found at i:47014526 original size:31 final size:31
Alignment explanation
Indices: 47014483--47014587 Score: 140
Period size: 31 Copynumber: 3.4 Consensus size: 31
47014473 CTATGGCATC
*
47014483 CATAA-AGATAGTCCGTTAGGACAATAAACA
1 CATAATAGATAGTCCGTTGGGACAATAAACA
*
47014513 CATAATAGGTAGTCCGTTGGGACAATAAACA
1 CATAATAGATAGTCCGTTGGGACAATAAACA
* * **
47014544 TAGAATAGATAGTTTGTTGGGACAATAAACA
1 CATAATAGATAGTCCGTTGGGACAATAAACA
*
47014575 CAAAATAGATAGT
1 CATAATAGATAGT
47014588 TTTTGAGACA
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
30 5 0.08
31 60 0.92
ACGTcount: A:0.44, C:0.12, G:0.20, T:0.24
Consensus pattern (31 bp):
CATAATAGATAGTCCGTTGGGACAATAAACA
Found at i:47014588 original size:31 final size:31
Alignment explanation
Indices: 47014501--47014602 Score: 134
Period size: 31 Copynumber: 3.3 Consensus size: 31
47014491 TAGTCCGTTA
* * **
47014501 GGACAATAAACACATAATAGGTAGTCCGTTG
1 GGACAATAAACACAAAATAGATAGTTTGTTG
* *
47014532 GGACAATAAACATAGAATAGATAGTTTGTTG
1 GGACAATAAACACAAAATAGATAGTTTGTTG
47014563 GGACAATAAACACAAAATAGATAGTTT-TTG
1 GGACAATAAACACAAAATAGATAGTTTGTTG
*
47014593 AGACAATAAA
1 GGACAATAAA
47014603 TATAGAACAA
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
30 12 0.19
31 51 0.81
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.25
Consensus pattern (31 bp):
GGACAATAAACACAAAATAGATAGTTTGTTG
Found at i:47014617 original size:30 final size:31
Alignment explanation
Indices: 47014502--47014618 Score: 119
Period size: 31 Copynumber: 3.8 Consensus size: 31
47014492 AGTCCGTTAG
* * * ** *
47014502 GACAATAAACACATAATAGGTAGTCCGTTGG
1 GACAATAAACATAGAATAGATAGTTTGTTGA
*
47014533 GACAATAAACATAGAATAGATAGTTTGTTGG
1 GACAATAAACATAGAATAGATAGTTTGTTGA
* *
47014564 GACAATAAACACAAAATAGATAGTTT-TTGA
1 GACAATAAACATAGAATAGATAGTTTGTTGA
* * *
47014594 GACAATAAATATAGAACAAATAGTT
1 GACAATAAACATAGAATAGATAGTT
47014619 CATCGGAATA
Statistics
Matches: 73, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
30 23 0.32
31 50 0.68
ACGTcount: A:0.46, C:0.10, G:0.18, T:0.26
Consensus pattern (31 bp):
GACAATAAACATAGAATAGATAGTTTGTTGA
Found at i:47014618 original size:61 final size:62
Alignment explanation
Indices: 47014501--47014618 Score: 157
Period size: 61 Copynumber: 1.9 Consensus size: 62
47014491 TAGTCCGTTA
* * * * *
47014501 GGACAATAAACACATAATAGGTAGTCCGTTGGGACAATAAACATAGAATAGATAGTTTGTTG
1 GGACAATAAACACAAAATAGATAGTCCGTTGAGACAATAAACATAGAACAAATAGTTTGTTG
** *
47014563 GGACAATAAACACAAAATAGATAGT-TTTTGAGACAATAAATATAGAACAAATAGTT
1 GGACAATAAACACAAAATAGATAGTCCGTTGAGACAATAAACATAGAACAAATAGTT
47014619 CATCGGAATA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
61 25 0.52
62 23 0.48
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (62 bp):
GGACAATAAACACAAAATAGATAGTCCGTTGAGACAATAAACATAGAACAAATAGTTTGTTG
Found at i:47019921 original size:49 final size:49
Alignment explanation
Indices: 47019812--47019925 Score: 131
Period size: 49 Copynumber: 2.3 Consensus size: 49
47019802 CTTGGTACTC
* * * *
47019812 AGTGCCTAGGTGTGTTTCGGAGGGATGCTAGCTTATGGGCTTGACACTT
1 AGTGCCTAGGTGTGTTTCAGAAGGATGCTAGCCTATGGGCTTGACACTG
* * * *
47019861 AGTTCCTAGGTGTGTTTTAGAAGGATGTTAGCCTATGGGCTTGGCACCTG
1 AGTGCCTAGGTGTGTTTCAGAAGGATGCTAGCCTATGGGCTTGACA-CTG
*
47019911 A-TGCCGAGGTGTGTT
1 AGTGCCTAGGTGTGTT
47019926 CTCGGTTGGA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 51 0.94
50 3 0.06
ACGTcount: A:0.17, C:0.16, G:0.34, T:0.33
Consensus pattern (49 bp):
AGTGCCTAGGTGTGTTTCAGAAGGATGCTAGCCTATGGGCTTGACACTG
Found at i:47021105 original size:22 final size:22
Alignment explanation
Indices: 47021066--47021108 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
47021056 ATCACTCTTC
* *
47021066 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
47021088 CTCTCCATTTGTTATTCTTTT
1 CTCTCCATTTATTATTCTTTT
47021109 CTTCTTCTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:47022386 original size:27 final size:27
Alignment explanation
Indices: 47022346--47022433 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
47022336 AGGAAGCGTC
*
47022346 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
47022373 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
47022400 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
*
47022428 TTGGTG
1 CTGGTG
47022434 ACTTTATCGC
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 3 0.06
27 41 0.77
28 9 0.17
ACGTcount: A:0.15, C:0.23, G:0.25, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:47024258 original size:50 final size:50
Alignment explanation
Indices: 47024115--47024259 Score: 229
Period size: 50 Copynumber: 2.9 Consensus size: 50
47024105 AAAATCAAAT
* * * *
47024115 ATATAACATCACATATGTACATA-TCTATATGGCCGAATATGCAAGTTAAA
1 ATATAACATCACATATGTACATACT-TATGTGGCCGAATATACATGATAAA
*
47024165 ATATAACATCACATATGTACATACCTATGTGGCCGAATATACATGATAAA
1 ATATAACATCACATATGTACATACTTATGTGGCCGAATATACATGATAAA
47024215 ATATAACATCACATATGTACATACTTATGTGGCCGAATATACATG
1 ATATAACATCACATATGTACATACTTATGTGGCCGAATATACATG
47024260 GTCATTTAGC
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 88 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (50 bp):
ATATAACATCACATATGTACATACTTATGTGGCCGAATATACATGATAAA
Found at i:47025592 original size:19 final size:20
Alignment explanation
Indices: 47025568--47025605 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
47025558 GGTACCACCA
47025568 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
47025587 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
47025606 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:47025900 original size:46 final size:45
Alignment explanation
Indices: 47025833--47025998 Score: 169
Period size: 47 Copynumber: 3.6 Consensus size: 45
47025823 CGCCCCTAAG
* *
47025833 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTT-GCATCCATAAA
* * *
47025879 TGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTGCATCCATAAA
* * *
47025926 CGAACTCGGACTCAACTCAACGAGTTC-GACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGAC-GTTGCATCCATAAA
47025971 TGAACTCGGACTCAACTCAACGAGTTCG
1 TGAACTCGGACTCAACTCAACGAGTTCG
47025999 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 11, Indels: 18
0.78 0.09 0.14
Matches are distributed among these distances:
42 6 0.06
43 3 0.03
44 1 0.01
45 26 0.26
46 26 0.26
47 28 0.28
48 1 0.01
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCATCCATAAA
Found at i:47025992 original size:92 final size:92
Alignment explanation
Indices: 47025834--47026002 Score: 277
Period size: 92 Copynumber: 1.8 Consensus size: 92
47025824 GCCCCTAAGT
* *
47025834 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
47025899 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGTTC-GATGCCTAGTTACATCTCAC
* * *
47025927 GAACTCGGACTCAACTCAACGAGTTC-GACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
47025991 CGAGTTCGATGC
66 CGAGTTCGATGC
47026003 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 5 0.07
92 41 0.58
93 25 0.35
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGATGCCTAGTTACATCTCAC
Found at i:47026018 original size:45 final size:45
Alignment explanation
Indices: 47025828--47026011 Score: 125
Period size: 46 Copynumber: 4.0 Consensus size: 45
47025818 TAACCCGCCC
* * *
47025828 CTAAGTGAACTCGGACTCAACTCAACGAGCTCG-GGCGTTC--GCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGATGC--TCAACCAT
*
47025872 CCATAAATGAACTCGGACTCAACTCAACGAGTTCAGATGC-CTAGTTA-CAT
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTTC-GATGCTC-A---ACCAT
* * * *
47025922 CTCA-CGAACTCGGACTCAACTCAACGAGTTCGACAT-TTGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCG--ATGCT-CAACCAT
47025967 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGATGCTCAACCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGATGCTCAACCAT
47026011 C
1 C
47026012 CTAGTGACAT
Statistics
Matches: 110, Mismatches: 11, Indels: 36
0.70 0.07 0.23
Matches are distributed among these distances:
43 7 0.06
44 3 0.03
45 29 0.26
46 32 0.29
47 27 0.25
48 7 0.06
49 2 0.02
50 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (45 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGATGCTCAACCAT
Found at i:47026455 original size:30 final size:30
Alignment explanation
Indices: 47026421--47026480 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
47026411 ATTTAATACG
47026421 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
47026451 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
47026481 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:47032925 original size:19 final size:20
Alignment explanation
Indices: 47032901--47032938 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
47032891 GGTACCACCA
47032901 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
47032920 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
47032939 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:47037962 original size:24 final size:24
Alignment explanation
Indices: 47037930--47037979 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
47037920 ACTATTGTTG
47037930 TAAGCGAATTCAATCAAAGGTACA
1 TAAGCGAATTCAATCAAAGGTACA
47037954 TAAGCGAATTCAATCAAAGGTACA
1 TAAGCGAATTCAATCAAAGGTACA
47037978 TA
1 TA
47037980 CCGTTCCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (24 bp):
TAAGCGAATTCAATCAAAGGTACA
Found at i:47043457 original size:27 final size:27
Alignment explanation
Indices: 47043430--47043584 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
47043420 TGCTATATAA
* * *
47043430 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
47043457 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* * *
47043484 TCAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAG
* *
47043512 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
47043539 TCATTTCGCACAC-TAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
*
47043565 TCAAATCGCACCCTTAGTGC
1 TCAAATCGCACACTTAGTGC
47043585 TGTACAATTT
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
26 20 0.19
27 63 0.59
28 23 0.22
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:47043495 original size:55 final size:54
Alignment explanation
Indices: 47043410--47043585 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
47043400 ATATTGAGCC
* * * *
47043410 CGCACAC-TCGTGCTATATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
47043463 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
47043518 CGCACACTTAGTGC-ATCATATTCATTTCGCACAC-TAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
*
47043571 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
47043586 GTACAATTTA
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
53 35 0.34
54 22 0.21
55 46 0.45
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:47043550 original size:82 final size:80
Alignment explanation
Indices: 47043430--47043584 Score: 204
Period size: 82 Copynumber: 1.9 Consensus size: 80
47043420 TGCTATATAA
* * *
47043430 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACAC-TAGTGCAACATAGTCA-AATCGCA
47043495 CACTTAGTGCCGCATGG
64 CACTTAGTGCCGCATGG
* * **
47043512 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTAGTGCAACATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTAGTGCAACATAGTCAAATCGCAC
*
47043576 CCTTAGTGC
65 ACTTAGTGC
47043585 TGTACAATTT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 15 0.23
81 17 0.27
82 32 0.50
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTAGTGCAACATAGTCAAATCGCACA
CTTAGTGCCGCATGG
Found at i:47048508 original size:21 final size:21
Alignment explanation
Indices: 47048482--47048521 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
47048472 CTTTTAGGCT
47048482 AATCCCACACGTCCATGTGGA
1 AATCCCACACGTCCATGTGGA
*
47048503 AATCCCACGCGTCCATGTG
1 AATCCCACACGTCCATGTG
47048522 TGATAGCTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.20, T:0.20
Consensus pattern (21 bp):
AATCCCACACGTCCATGTGGA
Found at i:47051154 original size:23 final size:25
Alignment explanation
Indices: 47051098--47051154 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 25
47051088 AAATATTTAA
47051098 AATTAAATTTTTGAAAATATATTTTTT
1 AATT-AATTTTTG-AAATATATTTTTT
47051125 AA-T--TTTTTG-AAT-TATTTTTT
1 AATTAATTTTTGAAATATATTTTTT
47051145 AATTAATTTT
1 AATTAATTTT
47051155 AAATAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
20 10 0.37
21 4 0.15
23 10 0.37
26 1 0.04
27 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (25 bp):
AATTAATTTTTGAAATATATTTTTT
Found at i:47057152 original size:49 final size:49
Alignment explanation
Indices: 47057099--47057280 Score: 173
Period size: 49 Copynumber: 3.8 Consensus size: 49
47057089 ACATCTAAGT
47057099 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGC
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGC
* * * ** * * *
47057148 CGATGCCATGCCCCAGAGAAGTCTTACACTGGCTCT-CACT-TATC-TGTGT
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACT-TACA-TACATCAAG-GC
* *
47057197 CGATGCCATGTCCCAGACAGGTCTTACACTAAC--AC--ACCTCAA-GC
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGC
* *
47057241 CGATGCCATGTCCCAGATATGTCTTACACTAACTTGCATA
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATA
47057281 TCTTGATTTC
Statistics
Matches: 103, Mismatches: 20, Indels: 21
0.72 0.14 0.15
Matches are distributed among these distances:
44 32 0.31
45 2 0.02
46 1 0.01
47 1 0.01
48 2 0.02
49 63 0.61
50 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (49 bp):
CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGC
Found at i:47057294 original size:93 final size:95
Alignment explanation
Indices: 47057074--47057317 Score: 275
Period size: 93 Copynumber: 2.6 Consensus size: 95
47057064 CAAACATAGC
** ** *
47057074 CTTACACTGGCTCTCAC-ATCTAAGTCGATGCCATGTCCCAGATAGGTCTTACACTAACTTACAT
1 CTTACACTAACTCTCACTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAAC-TACA-
47057138 ACATCAAGGCCGATGCCATGCCCCAGAGAAGT
64 ACATCAAGGCCGATGCCATGCCCCAGAGAAGT
**
47057170 CTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAAC-AC-A
1 CTTACACTAACTCTCAC-TATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAACTACAA
* * * *
47057233 CCTCAA-GCCGATGCCATGTCCCAGATATGT
65 CATCAAGGCCGATGCCATGCCCCAGAGAAGT
* *
47057263 CTTACACTAACT-TGCA-TATCTTGATTTCGATGCGATGTCCCAGACAGGTCTTACA
1 CTTACACTAACTCT-CACTATC-TG-TGTCGATGCCATGTCCCAGACAGGTCTTACA
47057318 ATGGCTCTCA
Statistics
Matches: 132, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
91 4 0.03
92 3 0.02
93 62 0.47
94 6 0.05
96 19 0.14
98 38 0.29
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (95 bp):
CTTACACTAACTCTCACTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAACTACAAC
ATCAAGGCCGATGCCATGCCCCAGAGAAGT
Found at i:47057342 original size:49 final size:49
Alignment explanation
Indices: 47057148--47057366 Score: 166
Period size: 49 Copynumber: 4.6 Consensus size: 49
47057138 ACATCAAGGC
* * * * * *
47057148 CGATGCCATGCCCCAGAGAAGTCTTACACTGGCTCTCACTTATCTGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACAATGGCTCTCACATATCTGTAT
* * * ** *
47057197 CGATGCCATGTCCCAGACAGGTCTTAC-A-----CTAACACACCTCAAGC
1 CGATGCCATGTCCCAGACAGGTCTTACAATGGCTCTCACATATCTGTA-T
* * * ** * *
47057241 CGATGCCATGTCCCAGATATGTCTTACACTAACT-T-GCATATCTTGATTT
1 CGATGCCATGTCCCAGACAGGTCTTACAATGGCTCTCACATATC-TG-TAT
*
47057290 CGATGCGATGTCCCAGACAGGTCTTACAATGGCTCTCACATATCTGTAT
1 CGATGCCATGTCCCAGACAGGTCTTACAATGGCTCTCACATATCTGTAT
*
47057339 CGATGCCATGTCCCAGACAGGTTTTACA
1 CGATGCCATGTCCCAGACAGGTCTTACA
47057367 CTGACACATA
Statistics
Matches: 127, Mismatches: 32, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
43 7 0.06
44 25 0.20
48 4 0.03
49 82 0.65
50 3 0.02
51 6 0.05
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACAATGGCTCTCACATATCTGTAT
Found at i:47057355 original size:142 final size:142
Alignment explanation
Indices: 47057099--47057374 Score: 392
Period size: 142 Copynumber: 1.9 Consensus size: 142
47057089 ACATCTAAGT
47057099 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGCCGATGCCATGCCCCAG
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGCCGATGCCATGCCCCAG
* * * *
47057164 AGAAGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGACAGGTCTTACACTAA
66 ACAAGTCTTACAATGGCTCTCACATATCTGTATCGATGCCATGTCCCAGACAGGTCTTACACTAA
47057229 CACACCTCAAGC
131 CACACCTCAAGC
* * ** *** * *
47057241 CGATGCCATGTCCCAGATATGTCTTACACTAACTTGCATATC-TTGATTTCGATGCGATGTCCCA
1 CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATA-CATCAAGGCCGATGCCATGCCCCA
* * *
47057305 GACAGGTCTTACAATGGCTCTCACATATCTGTATCGATGCCATGTCCCAGACAGGTTTTACACTG
65 GACAAGTCTTACAATGGCTCTCACATATCTGTATCGATGCCATGTCCCAGACAGGTCTTACACTA
47057370 ACACA
130 ACACA
47057375 TACATCACCC
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
142 116 0.99
143 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (142 bp):
CGATGCCATGTCCCAGATAGGTCTTACACTAACTTACATACATCAAGGCCGATGCCATGCCCCAG
ACAAGTCTTACAATGGCTCTCACATATCTGTATCGATGCCATGTCCCAGACAGGTCTTACACTAA
CACACCTCAAGC
Found at i:47058442 original size:14 final size:14
Alignment explanation
Indices: 47058423--47058452 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
47058413 GAGCTCCTAA
47058423 TCGCTAAAATTAAT
1 TCGCTAAAATTAAT
47058437 TCGCTAAAATTAAT
1 TCGCTAAAATTAAT
47058451 TC
1 TC
47058453 ACCAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.37
Consensus pattern (14 bp):
TCGCTAAAATTAAT
Found at i:47058459 original size:14 final size:14
Alignment explanation
Indices: 47058428--47058461 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
47058418 CCTAATCGCT
* *
47058428 AAAATTAATTCGCT
1 AAAATTAATTCACC
47058442 AAAATTAATTCACC
1 AAAATTAATTCACC
47058456 AAAATT
1 AAAATT
47058462 TTCATGCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.32
Consensus pattern (14 bp):
AAAATTAATTCACC
Found at i:47064926 original size:49 final size:48
Alignment explanation
Indices: 47064776--47065046 Score: 266
Period size: 49 Copynumber: 5.6 Consensus size: 48
47064766 CGATGCTGAC
* * **
47064776 GCCATGTTCCAAACATGGTCTTACACTGGCTCTCAC-ATCTAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTCTCACTATCTGGGTCGAT
* * * * * * *
47064824 GCCATGTCCCAAATAGGCCTTACACTGACT-T-AC-ATACATCGAGGCCAAC
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTAT-C-T-G-GGTCGAT
* *
47064873 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCAC-TATCTGGGTCGAT
*
47064922 GCCATGTCCCAGACAGGTCTTACACTAGCT-TGCA-TATCTTGAGGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCT-CACTATC-TG-GGTCGAT
* *
47064971 GCCATGTCCCAGACCGGTCTTACACTGGCTCTCACTTATCTGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCAC-TATCTGGGTCGAT
47065020 GCCATGTCCCAGACAGGTCTTACACTG
1 GCCATGTCCCAGACAGGTCTTACACTG
47065047 ACATACACAT
Statistics
Matches: 186, Mismatches: 23, Indels: 27
0.79 0.10 0.11
Matches are distributed among these distances:
45 4 0.02
46 2 0.01
47 18 0.10
48 16 0.09
49 131 0.70
50 5 0.03
51 7 0.04
52 1 0.01
53 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTATCTGGGTCGAT
Found at i:47064944 original size:98 final size:98
Alignment explanation
Indices: 47064774--47065053 Score: 370
Period size: 98 Copynumber: 2.9 Consensus size: 98
47064764 TGCGATGCTG
* * ** *
47064774 ACGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAC--ATCTAAGTCGATGCCATGTCCCAAA
1 ACGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGA
* *
47064837 TAGGCCTTACACTGACTTACATA-CATCGAGGCCA
65 CAGGTCTTACACTGACTTACATATC-TCGAGGCCA
*
47064871 ACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGCCGATGCCATGTCCCAGAC
1 ACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGAC
* * * *
47064936 AGGTCTTACACT-AGCTTGCATATCTTGAGGTCG
66 AGGTCTTACACTGA-CTTACATATCTCGAGGCCA
* *
47064969 ATGCCATGTCCCAGACCGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGAC
1 ACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGAC
*
47065034 AGGTCTTACACTGACATACA
66 AGGTCTTACACTGACTTACA
47065054 CATCACCCAA
Statistics
Matches: 161, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
96 20 0.12
97 16 0.10
98 123 0.76
99 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (98 bp):
ACGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCCAGAC
AGGTCTTACACTGACTTACATATCTCGAGGCCA
Found at i:47067868 original size:151 final size:151
Alignment explanation
Indices: 47067594--47067898 Score: 574
Period size: 151 Copynumber: 2.0 Consensus size: 151
47067584 CTTCTTACAA
47067594 TAGTGAAACCTTTTGTCTCGCTTCTTTGGTGCTACCAAAACAAAAGCTTGCTTTCTGCCTTACTA
1 TAGTGAAACCTTTTGTCTCGCTTCTTTGGTGCTACCAAAACAAAAGCTTGCTTTCTGCCTTACTA
*
47067659 TCCAAACCAAACTCATTGTCGAGTTTGTTTCTACTCAACAAATGACCCTTCATATCTTTGAATGA
66 TCCAAACCAAACTCATTGTCGAGTTTGTCTCTACTCAACAAATGACCCTTCATATCTTTGAATGA
*
47067724 GAGTTTATCTTTGCCATAAAT
131 GAGTTTATCTTTACCATAAAT
*
47067745 TAGTGAAACCTTTTGTCTCGCTTCTTTGGTGCTACCAAAACAATAGCTTGCTTTCTGCCTTACTA
1 TAGTGAAACCTTTTGTCTCGCTTCTTTGGTGCTACCAAAACAAAAGCTTGCTTTCTGCCTTACTA
*
47067810 TCCAAACCAAACTCATTGTCGAGTTTGTCTCTACTCAGCAAATGACCCTTCATATCTTTGAATGA
66 TCCAAACCAAACTCATTGTCGAGTTTGTCTCTACTCAACAAATGACCCTTCATATCTTTGAATGA
47067875 GAGTTTATCTTTACCATAAAT
131 GAGTTTATCTTTACCATAAAT
47067896 TAG
1 TAG
47067899 GGTCTCCTTG
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 150 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.36
Consensus pattern (151 bp):
TAGTGAAACCTTTTGTCTCGCTTCTTTGGTGCTACCAAAACAAAAGCTTGCTTTCTGCCTTACTA
TCCAAACCAAACTCATTGTCGAGTTTGTCTCTACTCAACAAATGACCCTTCATATCTTTGAATGA
GAGTTTATCTTTACCATAAAT
Found at i:47073347 original size:29 final size:29
Alignment explanation
Indices: 47073284--47073351 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
47073274 TAATCAACCG
47073284 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
47073313 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
47073342 CGCACACTTA
1 CGCACACTTA
47073352 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:47073463 original size:173 final size:174
Alignment explanation
Indices: 47073173--47073499 Score: 602
Period size: 173 Copynumber: 1.9 Consensus size: 174
47073163 AACTCAAGGT
*
47073173 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
47073238 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
47073303 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
47073347 ACTTACCTTTTCCGCTGTCCAAAA-TGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
47073411 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
47073476 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
47073500 TGTACAATTT
Statistics
Matches: 148, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
173 124 0.84
174 24 0.16
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:47073491 original size:29 final size:30
Alignment explanation
Indices: 47073452--47073530 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
47073442 CTTAATAATC
47073452 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
47073482 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
47073511 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
47073531 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:47081407 original size:29 final size:29
Alignment explanation
Indices: 47081344--47081411 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
47081334 TAATCAACCG
47081344 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
47081373 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
47081402 CGCACACTTA
1 CGCACACTTA
47081412 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:47081524 original size:174 final size:174
Alignment explanation
Indices: 47081233--47081560 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
47081223 AACTCAAGGT
* *
47081233 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
47081298 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
47081363 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
47081407 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
47081472 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
47081537 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
47081561 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:47081552 original size:29 final size:30
Alignment explanation
Indices: 47081513--47081591 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
47081503 CTTAATAATC
47081513 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
47081543 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
47081572 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
47081592 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:47091550 original size:19 final size:20
Alignment explanation
Indices: 47091509--47091551 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
47091499 TTTACTAAAG
* *
47091509 TTTGTAAAATAGATGGTACT
1 TTTGTAAAATAGATGGAAAT
*
47091529 TTTGTGAAATA-ATGGAAAT
1 TTTGTAAAATAGATGGAAAT
47091548 TTTG
1 TTTG
47091552 GGTTGCTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (20 bp):
TTTGTAAAATAGATGGAAAT
Found at i:47092091 original size:48 final size:48
Alignment explanation
Indices: 47092034--47092138 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
47092024 ATGAGAACTT
*
47092034 GTGTAAGACATGTCTAGGACATGCAT-GAGCCTTGAGATATACAAGCCA
1 GTGTAAGACATGTCTAGGACATGCATCG-GCCTCGAGATATACAAGCCA
* *
47092082 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTA
1 GTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCCA
47092130 GTGTAAGAC
1 GTGTAAGAC
47092139 CTATCTGAGA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
48 52 0.98
49 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (48 bp):
GTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCCA
Found at i:47092151 original size:48 final size:48
Alignment explanation
Indices: 47092034--47092151 Score: 159
Period size: 48 Copynumber: 2.5 Consensus size: 48
47092024 ATGAGAACTT
*
47092034 GTGTAAGACATGTCT-AGGACATGCATGAGCCTTGAGATATACAAGCCA
1 GTGTAAGACATGTCTGA-GACATGCATGAGCCTCGAGATATACAAGCCA
* *
47092082 GTGTAAGACATGTCTGGGACATGCATCG-GCCTCGAGATATACAAGCTA
1 GTGTAAGACATGTCTGAGACATGCAT-GAGCCTCGAGATATACAAGCCA
* *
47092130 GTGTAAGACCTATCTGAGACAT
1 GTGTAAGACATGTCTGAGACAT
47092152 AGCGTCAGCT
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
48 61 0.98
49 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.24
Consensus pattern (48 bp):
GTGTAAGACATGTCTGAGACATGCATGAGCCTCGAGATATACAAGCCA
Found at i:47092230 original size:49 final size:49
Alignment explanation
Indices: 47092172--47092344 Score: 154
Period size: 49 Copynumber: 3.6 Consensus size: 49
47092162 TGTTATGTGT
* *
47092172 CAGTGTAAGACTTGTCTGGGACATGGCGTCGACAC-CGATAGATGAGAAC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAGAAC
* *** * **
47092221 CAGTGTAAGACCTATCTGGGACACATCATCGACCTCGATATATGAGAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAGAAC
* * * * * ** *
47092270 CAGTGTAAGACCTGCCTAGGACATGGCATCAACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAGAAC
47092317 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
47092345 GTCAGCATCT
Statistics
Matches: 98, Mismatches: 24, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
47 16 0.16
48 14 0.14
49 68 0.69
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAGAAC
Found at i:47092293 original size:142 final size:143
Alignment explanation
Indices: 47092079--47092347 Score: 309
Period size: 142 Copynumber: 1.9 Consensus size: 143
47092069 GATATACAAG
* * *
47092079 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTATC
1 CCAGTGTAAGACATATCTGGGACATGCATCGACCTCGAGATATACAAGCTAGTGTAAGACCTACC
* * * *
47092144 TGAGACATAGCGTCAGCTTGTTATGTG-T-CAGTGTAAGA-CTTGTCTGGGACATGGCGTCGACA
66 TGAGACATAGCATCAACTT-TGATGTGCTACAGTGTAAGACCATGTCTGGGACATGGCGTCGACA
47092206 CCGATAGATGAGAA
130 CCGATAGATGAGAA
* * *
47092220 CCAGTGTAAGACCTATCTGGGACACAT-CATCGACCTCGATATATGA-GAG-TCAGTGTAAGACC
1 CCAGTGTAAGACATATCTGGG--ACATGCATCGACCTCGAGATAT-ACAAGCT-AGTGTAAGACC
* *
47092282 TGCCT-AGGACATGGCATCAACTTTGATGTGCTAGCCAGTGTAAGACCATGTCTGGGACATGGCG
62 TACCTGA-GACATAGCATCAACTTTGATGTGCTA--CAGTGTAAGACCATGTCTGGGACATGGCG
47092346 TC
124 TC
47092348 AGCATCTTAA
Statistics
Matches: 106, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
141 27 0.25
142 45 0.42
143 5 0.05
145 10 0.09
146 19 0.18
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (143 bp):
CCAGTGTAAGACATATCTGGGACATGCATCGACCTCGAGATATACAAGCTAGTGTAAGACCTACC
TGAGACATAGCATCAACTTTGATGTGCTACAGTGTAAGACCATGTCTGGGACATGGCGTCGACAC
CGATAGATGAGAA
Found at i:47100584 original size:49 final size:47
Alignment explanation
Indices: 47100363--47100770 Score: 654
Period size: 47 Copynumber: 8.6 Consensus size: 47
47100353 CCCTTCGGGA
* * * * * *
47100363 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47100410 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47100457 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47100504 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47100551 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47100600 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47100647 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47100696 CTTATCACATATATTACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGC
47100744 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
47100771 TATTCAAATA
Statistics
Matches: 338, Mismatches: 18, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
47 201 0.59
48 45 0.13
49 92 0.27
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47100601 original size:96 final size:96
Alignment explanation
Indices: 47100363--47100770 Score: 657
Period size: 96 Copynumber: 4.3 Consensus size: 96
47100353 CCCTTCGGGA
* * * * * * *
47100363 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47100426 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
47100457 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47100520 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
47100551 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47100616 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
47100647 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-TA
* *
47100712 CACTTTCACATTCATCACATTGGCCATTCGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
47100744 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
47100771 TATTCAAATA
Statistics
Matches: 294, Mismatches: 15, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 91 0.31
95 19 0.06
96 143 0.49
97 40 0.14
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47103362 original size:50 final size:52
Alignment explanation
Indices: 47103287--47103400 Score: 169
Period size: 56 Copynumber: 2.2 Consensus size: 52
47103277 ACAAGGGATG
47103287 ATGGGCAAAACATGTCATGAAACA-TG-TAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATTGTTAATGGAAAAATAAAATAAGAAGC
*
47103337 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACA---T-TGTTAATGGAAAAATAAAATAAGAAGC
47103393 ATGGGCAA
1 ATGGGCAA
47103401 TAAACTAATA
Statistics
Matches: 57, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
50 24 0.42
55 2 0.04
56 31 0.54
ACGTcount: A:0.47, C:0.10, G:0.23, T:0.20
Consensus pattern (52 bp):
ATGGGCAAAACATGTCATGAAACATTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:47104898 original size:40 final size:39
Alignment explanation
Indices: 47104814--47104996 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 39
47104804 TCGAATGATG
* * *
47104814 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
47104853 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
*
47104894 TCCGGGCTAAGCCCGAAGGCA-TT-TGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
47104931 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
47104970 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
47104997 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
37 22 0.18
38 12 0.10
39 12 0.10
40 65 0.54
41 9 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:47104948 original size:77 final size:79
Alignment explanation
Indices: 47104814--47104996 Score: 212
Period size: 77 Copynumber: 2.3 Consensus size: 79
47104804 TCGAATGATG
* * *
47104814 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGACCCGAAGGCATT-TGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
47104879 GTGCGAGATACTA-A
65 GTGCGAGATACTATA
* * * **
47104893 TTCCGGGCTAAG-CCCGAAGGCATTTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 -TCCGGGCTAAGACCCGAAGGCATTTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
47104955 TGTGCGAGTTACTATA
64 TGTGCGAGATACTATA
* *
47104971 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
47104997 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
76 1 0.01
77 49 0.54
78 18 0.20
79 11 0.12
80 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGACCCGAAGGCATTTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGATACTATA
Found at i:47110848 original size:56 final size:56
Alignment explanation
Indices: 47110762--47110934 Score: 298
Period size: 56 Copynumber: 3.1 Consensus size: 56
47110752 ACAAGGGATG
47110762 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
47110818 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGG-AAAAT-AAATAAGAA-C
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* * *
47110871 ATGGGTAAAACATGTCATGAAACATGTTGTCTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
47110927 ATGGGCAA
1 ATGGGCAA
47110935 TAAACTAATA
Statistics
Matches: 110, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
53 37 0.34
54 13 0.12
55 14 0.13
56 46 0.42
ACGTcount: A:0.45, C:0.09, G:0.22, T:0.24
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:47112443 original size:40 final size:39
Alignment explanation
Indices: 47112359--47112543 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 39
47112349 TCGAATGATG
* * *
47112359 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
47112398 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
47112439 TCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
47112478 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
47112517 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
47112544 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 35 0.29
40 78 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:47112495 original size:79 final size:81
Alignment explanation
Indices: 47112359--47112543 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
47112349 TCGAATGATG
* *
47112359 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
47112423 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
47112438 TTCCGGGCTAAG-CCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
47112500 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
47112518 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
47112544 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.64
80 32 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:47112565 original size:79 final size:79
Alignment explanation
Indices: 47112412--47112576 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
47112402 GGACTAAGAT
* ***
47112412 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
47112477 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
47112491 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
47112554 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47112570 CCGAAGG
1 CCGAAGG
47112577 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:47126256 original size:48 final size:48
Alignment explanation
Indices: 47126185--47126727 Score: 978
Period size: 48 Copynumber: 11.3 Consensus size: 48
47126175 TGTACAAGAT
* * *
47126185 AAATATATAAGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
47126233 AAATATATAAGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
47126281 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
47126329 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* * *
47126377 AAATATGTATGAGATATGTATATTTGGTAAAGCTGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
47126425 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
47126473 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
47126521 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATAGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
47126569 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
47126617 AAATATGAATGGGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
47126665 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
47126713 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
47126728 GTGTGTATAT
Statistics
Matches: 479, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 479 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
Found at i:47126922 original size:37 final size:37
Alignment explanation
Indices: 47126872--47126970 Score: 162
Period size: 37 Copynumber: 2.7 Consensus size: 37
47126862 ATATATTCCG
47126872 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
* * *
47126909 GGTAAGACCCGATGACTACGTGTGGAGATTTTTTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
*
47126946 GGTAAGACCCGATAACTACGTGTGG
1 GGTAAGACCCGATGACTACGTGTGG
47126971 GGACTATTCG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCA
Found at i:47130907 original size:27 final size:27
Alignment explanation
Indices: 47130857--47131116 Score: 285
Period size: 27 Copynumber: 9.7 Consensus size: 27
47130847 CCATTAATCA
* * *
47130857 GTAAAATGACTATTTTTCCTTTATGAG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* * *
47130884 GTAAAATAATTGTTCTGCCCTTATGAG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* * * * *
47130911 TTAAAATAATTGTTTTGCCCTTACGTG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* *
47130938 GTAAAATGACTATTTTGCCCTTATGCG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* *
47130965 GCAAAATGACTGTTCTGCCCTTATGAG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* *
47130992 GTAAAATGACTATTTTGCCCTTA-CATG
1 GTAAAATGACTGTTTTGCCCTTATGA-G
*
47131019 GTAAAATGAC-GTTTTG-CCTTATGAT
1 GTAAAATGACTGTTTTGCCCTTATGAG
*
47131044 GTAAAATGACTGTTTTGCCCTTTTGAG
1 GTAAAATGACTGTTTTGCCCTTATGAG
* *
47131071 GTAAAATGACTATTTTACCCTTAT-ATG
1 GTAAAATGACTGTTTTGCCCTTATGA-G
47131098 GTAAAATGACTGTTTTGCC
1 GTAAAATGACTGTTTTGCC
47131117 TTTTTATGGT
Statistics
Matches: 194, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
25 15 0.08
26 14 0.07
27 165 0.85
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (27 bp):
GTAAAATGACTGTTTTGCCCTTATGAG
Found at i:47130997 original size:81 final size:81
Alignment explanation
Indices: 47130857--47131116 Score: 344
Period size: 81 Copynumber: 3.2 Consensus size: 81
47130847 CCATTAATCA
* * * * * * *
47130857 GTAAAATGACTATTTTTCCTTTATGAGGTAAAATAATTGTTCTGCCCTTATGAGTTAAAATAATT
1 GTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTCTGCCCTTATGAGGTAAAATGACT
* *
47130922 GTTTTGCCCTTACGTG
66 ATTTTGCCCTTACATG
* *
47130938 GTAAAATGACTATTTTGCCCTTATGCGGCAAAATGACTGTTCTGCCCTTATGAGGTAAAATGACT
1 GTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTCTGCCCTTATGAGGTAAAATGACT
47131003 ATTTTGCCCTTACATG
66 ATTTTGCCCTTACATG
* * * *
47131019 GTAAAATGAC-GTTTTG-CCTTATGATGTAAAATGACTGTTTTGCCCTTTTGAGGTAAAATGACT
1 GTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTCTGCCCTTATGAGGTAAAATGACT
* *
47131082 ATTTTACCCTTATATG
66 ATTTTGCCCTTACATG
*
47131098 GTAAAATGACTGTTTTGCC
1 GTAAAATGACTATTTTGCC
47131117 TTTTTATGGT
Statistics
Matches: 158, Mismatches: 19, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
79 66 0.42
80 11 0.07
81 81 0.51
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (81 bp):
GTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTGTTCTGCCCTTATGAGGTAAAATGACT
ATTTTGCCCTTACATG
Found at i:47131141 original size:54 final size:55
Alignment explanation
Indices: 47130921--47131149 Score: 174
Period size: 54 Copynumber: 4.3 Consensus size: 55
47130911 TTAAAATAAT
* * * * *
47130921 TGTTTTGCCCTTACG-TGGTAAAATGACTATTTTGCC-CTT-ATGCGGCAAAAT-GA
1 TGTTTTACCCTTATGATGGTAAAATGACTGTTTTGCCTTTTCAT--GGTAAAATGGA
* * * * *
47130974 CTGTTCTGCCCTTATGA-GGTAAAATGACTATTTTGCCCTTACATGGTAAAAT-GA
1 -TGTTTTACCCTTATGATGGTAAAATGACTGTTTTGCCTTTTCATGGTAAAATGGA
* * *
47131028 CGTTTT-GCCTTATGAT-GTAAAATGACTGTTTTGCCCTTTTGA-GGTAAAAT-GA
1 TGTTTTACCCTTATGATGGTAAAATGACTGTTTTG-CCTTTTCATGGTAAAATGGA
* * * *
47131080 CTATTTTACCCTTAT-ATGGTAAAATGACTGTTTTGCCTTTTTATGGTAAGATGGT
1 -TGTTTTACCCTTATGATGGTAAAATGACTGTTTTGCCTTTTCATGGTAAAATGGA
*
47131135 TGTTTTACCCCTATG
1 TGTTTTACCCTTATG
47131150 TGATGTATGT
Statistics
Matches: 144, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
52 34 0.24
53 22 0.15
54 84 0.58
55 2 0.01
56 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (55 bp):
TGTTTTACCCTTATGATGGTAAAATGACTGTTTTGCCTTTTCATGGTAAAATGGA
Found at i:47133947 original size:142 final size:145
Alignment explanation
Indices: 47133730--47133989 Score: 332
Period size: 142 Copynumber: 1.8 Consensus size: 145
47133720 CCACATTATA
* * * * *
47133730 AGAGCCAGTGTAAGACATGTCTGGGACATACATCGGTCTCGAGATATGCAAGCTAGTGTAAGACT
1 AGAGCCAGTGTAAGACATATCTGGGACATACATCAGCCTCGAGATATGAAAGCTAGTGTAAGACC
* * * *
47133795 TGTCTGGGACATGGCGTC-AGCTTGTTGTG-T-GCCAATGTAAGACC-TGTCTGGGATATGGCAT
66 TGTCTAGGACATGGCATCAAACTTGATGTGTTAGCCAATGTAAGACCATGTCTGGGATATGGCAT
47133856 CGACACCAATAGATG
131 CGACACCAATAGATG
* * * **
47133871 AGAGCTAGTGTAAGACCTATCTGGGACATGGCATCAGCCTCGATTTATGAAAG-TCAGTGTAAGA
1 AGAGCCAGTGTAAGACATATCTGGGACAT-ACATCAGCCTCGAGATATGAAAGCT-AGTGTAAGA
*
47133935 CCTGTCTAGGACATGGCATCAAATTTGATGTGTTAGCCAATGTAAGACCATGTCT
64 CCTGTCTAGGACATGGCATCAAACTTGATGTGTTAGCCAATGTAAGACCATGTCT
47133990 AGGACATGTG
Statistics
Matches: 98, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
141 27 0.28
142 43 0.44
143 8 0.08
144 1 0.01
145 14 0.14
146 5 0.05
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (145 bp):
AGAGCCAGTGTAAGACATATCTGGGACATACATCAGCCTCGAGATATGAAAGCTAGTGTAAGACC
TGTCTAGGACATGGCATCAAACTTGATGTGTTAGCCAATGTAAGACCATGTCTGGGATATGGCAT
CGACACCAATAGATG
Done.