Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 148 of 349
Found at i:47140337 original size:154 final size:154
Alignment explanation
Indices: 47140054--47140360 Score: 454
Period size: 154 Copynumber: 2.0 Consensus size: 154
47140044 GGGTCACACG
* * * *
47140054 GCCGAAACACACGTCCGTGTCTTAAGCCATGTAACAATCGAAATAGGGACACACAACCATGTCCC
1 GCCGAAACACACGCCCGTGTCTCAAGCCATGTAACAATCAAAATAGGGACACACAACCATGACCC
* * * *
47140119 AGCCCGTGTCTATGCCCGTGTAACTCTCTGAGTTGGGTTACACGGCCAAGCCATACACCTGTGTG
66 AGCCCGTGTCCATGCCCGTGTAACTCTCTGAGTTGGGTCACACGGCCAAGCCACACACCCGTGTG
*
47140184 CTAGGTCGTGTAACACTCGAAATA
131 CTAGGCCGTGTAACACTCGAAATA
* * * ** *
47140208 GCCGAAACACATGCCCGTGTCTCAGGCCATGTAA-ATATTAAAATAGGGACACATGACCCTGACC
1 GCCGAAACACACGCCCGTGTCTCAAGCCATGTAACA-ATCAAAATAGGGACACACAACCATGACC
*
47140272 CAGCCCGTGTCCGTGCCCGTGTAACTCTCTGAGTTGGGTCACACGGCCAAGCCACACACCCGTGT
65 CAGCCCGTGTCCATGCCCGTGTAACTCTCTGAGTTGGGTCACACGGCCAAGCCACACACCCGTGT
47140337 GCTAGGCCGTGTAACACTCGAAAT
130 GCTAGGCCGTGTAACACTCGAAAT
47140361 GGCCTTACAT
Statistics
Matches: 136, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
153 1 0.01
154 135 0.99
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (154 bp):
GCCGAAACACACGCCCGTGTCTCAAGCCATGTAACAATCAAAATAGGGACACACAACCATGACCC
AGCCCGTGTCCATGCCCGTGTAACTCTCTGAGTTGGGTCACACGGCCAAGCCACACACCCGTGTG
CTAGGCCGTGTAACACTCGAAATA
Found at i:47141727 original size:46 final size:46
Alignment explanation
Indices: 47141659--47141841 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
47141649 TATATATACA
* * * *
47141659 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
47141705 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
47141751 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
47141797 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
47141842 ATACACTTCC
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:47141906 original size:47 final size:47
Alignment explanation
Indices: 47141815--47142099 Score: 374
Period size: 47 Copynumber: 6.1 Consensus size: 47
47141805 ACACATTTCG
* * * * * * *
47141815 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTCATCA
**
47141862 CATTGGCCATTCGGCCTTATCATGCATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
47141909 CATTGGCCATTCGGCCTTATCACACATTTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
47141956 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * *
47142003 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCATATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * * * ** *
47142050 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
47142097 CAT
1 CAT
47142100 AAAATCCTAA
Statistics
Matches: 215, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 214 1.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:47141930 original size:22 final size:22
Alignment explanation
Indices: 47141858--47141979 Score: 65
Period size: 23 Copynumber: 5.3 Consensus size: 22
47141848 TTCCACGTTC
47141858 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
47141880 ATCATGCATAT-G-CATGTTC-ACATT
1 ATCA--CAT-TGGCCA--TTCGGCCTT
47141904 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
47141927 ATCACACATTTG-CATGTTC-ACATT
1 AT--CACATTGGCCA--TTCGGCCTT
47141951 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
47141974 ATCACA
1 ATCACA
47141980 CATATGCATG
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 19 0.26
23 21 0.28
24 21 0.28
25 13 0.18
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:47141936 original size:24 final size:24
Alignment explanation
Indices: 47141907--47141982 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
47141897 TCACATTCAT
47141907 CACATTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGGCCTTATCA
* * *
47141931 CACATTTG-CATGTTC--ACAT-TCA
1 CACATTGGCCA--TTCGGCCTTATCA
47141953 TCACATTGGCCATTCGGCCTTATCA
1 -CACATTGGCCATTCGGCCTTATCA
47141978 CACAT
1 CACAT
47141983 ATGCATGTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 16 0.41
25 6 0.15
ACGTcount: A:0.24, C:0.32, G:0.13, T:0.32
Consensus pattern (24 bp):
CACATTGGCCATTCGGCCTTATCA
Found at i:47141957 original size:25 final size:25
Alignment explanation
Indices: 47141927--47142004 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 25
47141917 ATTCGGCCTT
47141927 ATCACACATTTGCATGTTCACATTC
1 ATCACACATTTGCATGTTCACATTC
* * *
47141952 AT--CACATTGGCCA--TTCGGCCTT-
1 ATCACACATTTG-CATGTTC-ACATTC
*
47141974 ATCACACATATGCATGTTCACATTC
1 ATCACACATTTGCATGTTCACATTC
47141999 ATCACA
1 ATCACA
47142005 TTGGCCATTC
Statistics
Matches: 39, Mismatches: 7, Indels: 14
0.65 0.12 0.23
Matches are distributed among these distances:
22 5 0.13
23 12 0.31
24 11 0.28
25 11 0.28
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.32
Consensus pattern (25 bp):
ATCACACATTTGCATGTTCACATTC
Found at i:47149151 original size:37 final size:36
Alignment explanation
Indices: 47149085--47149161 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 36
47149075 CATTTTTTAT
* *
47149085 TTTCATTTTGGAGAAAACCACATTTATTTCCAAATG
1 TTTCATTTTGGAGAAAACCACAATAATTTCCAAATG
* ** *
47149121 ATTTCATTTTGGAGAAAATCTTAATAATTTCTAAATG
1 -TTTCATTTTGGAGAAAACCACAATAATTTCCAAATG
47149158 TTTC
1 TTTC
47149162 CTATTTTTCC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
36 4 0.12
37 30 0.88
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (36 bp):
TTTCATTTTGGAGAAAACCACAATAATTTCCAAATG
Found at i:47149634 original size:28 final size:28
Alignment explanation
Indices: 47149591--47149650 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
47149581 CTAGACAACT
47149591 CACTAAGGGACAAAGGAG-CCAACCTGTC
1 CACTAAGGGACAAAGGAGCCCAACC-GTC
**
47149619 CACTAAGGGAGGAAGGAGCCCAACCGTC
1 CACTAAGGGACAAAGGAGCCCAACCGTC
47149647 CACT
1 CACT
47149651 TGAAGTGTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 23 0.79
29 6 0.21
ACGTcount: A:0.33, C:0.30, G:0.27, T:0.10
Consensus pattern (28 bp):
CACTAAGGGACAAAGGAGCCCAACCGTC
Found at i:47150127 original size:14 final size:14
Alignment explanation
Indices: 47150108--47150137 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
47150098 TCATTGTTTT
47150108 TAATCTAGTTTAAC
1 TAATCTAGTTTAAC
*
47150122 TAATCTATTTTAAC
1 TAATCTAGTTTAAC
47150136 TA
1 TA
47150138 CGAACGCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.13, G:0.03, T:0.47
Consensus pattern (14 bp):
TAATCTAGTTTAAC
Found at i:47151512 original size:18 final size:18
Alignment explanation
Indices: 47151491--47151526 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
47151481 TATTTTTCCC
*
47151491 TAAAATGAATTTCAAAAA
1 TAAAATCAATTTCAAAAA
*
47151509 TAAAATCAATTTTAAAAA
1 TAAAATCAATTTCAAAAA
47151527 GAAACGAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (18 bp):
TAAAATCAATTTCAAAAA
Found at i:47156698 original size:43 final size:42
Alignment explanation
Indices: 47156650--47156769 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
47156640 ACCAAGATGT
*
47156650 GATTACATGTAAGACCATGTCTGGGATATTGGCATCGCTAATC
1 GATTACATGTAAGACCATGTCTGGGATA-TGGCATCGATAATC
* * * * * *
47156693 GATTACATATAAGACCCTGTTTGGGACAATGGCATCGATATTT
1 GATTACATGTAAGACCATGTCTGGGA-TATGGCATCGATAATC
* *
47156736 GATTACATGTAAGACCATATCTAGGATATGGCAT
1 GATTACATGTAAGACCATGTCTGGGATATGGCAT
47156770 TGTACGAGTT
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 7 0.11
43 55 0.87
44 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGATATGGCATCGATAATC
Found at i:47160760 original size:22 final size:22
Alignment explanation
Indices: 47160735--47160779 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
47160725 GTTAGTAAAG
*
47160735 ATGTGGAGTTAGTTGAATTCAT
1 ATGTGCAGTTAGTTGAATTCAT
47160757 ATGTGCAGTTAGTTGAATTCAT
1 ATGTGCAGTTAGTTGAATTCAT
47160779 A
1 A
47160780 AGTCAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.07, G:0.24, T:0.40
Consensus pattern (22 bp):
ATGTGCAGTTAGTTGAATTCAT
Found at i:47162787 original size:22 final size:21
Alignment explanation
Indices: 47162753--47162797 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
47162743 AACTCTAAAA
47162753 TTAAAAAATAAAAATA-AATT
1 TTAAAAAATAAAAATATAATT
47162773 TTAAAAATATGAAAAATATAATT
1 TTAAAAA-AT-AAAAATATAATT
47162796 TT
1 TT
47162798 TTTCTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.32
21 2 0.09
22 7 0.32
23 6 0.27
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
TTAAAAAATAAAAATATAATT
Found at i:47171356 original size:31 final size:33
Alignment explanation
Indices: 47171316--47171376 Score: 83
Period size: 31 Copynumber: 1.9 Consensus size: 33
47171306 ATCCTAATTC
47171316 TAAAAA-TTTTAAAGAAATAT-ATAA-AAATACA
1 TAAAAATTTTTAAA-AAATATAATAATAAATACA
*
47171347 TAAATATTTTTAAAAAATATAATAATAAAT
1 TAAAAATTTTTAAAAAATATAATAATAAAT
47171377 TTAAAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 11 0.42
32 11 0.42
33 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (33 bp):
TAAAAATTTTTAAAAAATATAATAATAAATACA
Found at i:47171367 original size:29 final size:31
Alignment explanation
Indices: 47171316--47171376 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 31
47171306 ATCCTAATTC
47171316 TAAAAATTTTAAAGAAATATATAAAAATACA
1 TAAAAATTTTAAAGAAATATATAAAAATACA
*
47171347 TAAATATTTTTAAA-AAATATAATAATAAAT
1 TAAA-AATTTTAAAGAAATAT-ATAA-AAAT
47171377 TTAAAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 10 0.38
32 12 0.46
33 4 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (31 bp):
TAAAAATTTTAAAGAAATATATAAAAATACA
Found at i:47171373 original size:21 final size:22
Alignment explanation
Indices: 47171355--47171397 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
47171345 CATAAATATT
*
47171355 TTTAAAAA-ATATAATAATAAA
1 TTTAAAAATATATAAAAATAAA
47171376 TTTAAAAATATATAAAAATAAA
1 TTTAAAAATATATAAAAATAAA
47171398 AAATATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
TTTAAAAATATATAAAAATAAA
Found at i:47171393 original size:10 final size:10
Alignment explanation
Indices: 47171330--47171395 Score: 55
Period size: 10 Copynumber: 6.5 Consensus size: 10
47171320 AATTTTAAAG
47171330 AAATATATAA
1 AAATATATAA
*
47171340 AAATACATAA
1 AAATATATAA
* * *
47171350 ATATTTTTAAA
1 AAATATAT-AA
47171361 AAATATAATAA
1 AAATAT-ATAA
47171372 TAAAT-T-TAA
1 -AAATATATAA
47171381 AAATATATAA
1 AAATATATAA
47171391 AAATA
1 AAATA
47171396 AAAAATATAT
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
8 4 0.09
9 4 0.09
10 21 0.49
11 9 0.21
12 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (10 bp):
AAATATATAA
Found at i:47171450 original size:24 final size:24
Alignment explanation
Indices: 47171423--47171486 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 24
47171413 AAGAAATCAT
47171423 AATATATAAATTATAAA-A-TTTAAA
1 AATATATAAA--ATAAATATTTTAAA
47171447 AATATATAAAATAAATATTTTAAA
1 AATATATAAAATAAATATTTTAAA
47171471 AA-ATATAATAATAAAT
1 AATATATAA-AATAAAT
47171487 TAAAATATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.14
23 7 0.19
24 25 0.68
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
AATATATAAAATAAATATTTTAAA
Found at i:47171491 original size:18 final size:19
Alignment explanation
Indices: 47171470--47171509 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
47171460 AATATTTTAA
47171470 AAAATATAATAATAA-ATT
1 AAAATATAATAATAATATT
* *
47171488 AAAATATTATATTAATATT
1 AAAATATAATAATAATATT
47171507 AAA
1 AAA
47171510 TAAACTGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATATAATAATAATATT
Found at i:47171504 original size:21 final size:20
Alignment explanation
Indices: 47171356--47171491 Score: 73
Period size: 17 Copynumber: 7.3 Consensus size: 20
47171346 ATAAATATTT
47171356 TTAAAAAATATAATAATAAA
1 TTAAAAAATATAATAATAAA
*
47171376 TTTAAAAATAT-ATAA-AAA
1 TTAAAAAATATAATAATAAA
* **
47171394 -TAAAAAATAT-ATTATTGA
1 TTAAAAAATATAATAATAAA
* *
47171412 -CAAGAAATCATAATATATAAA
1 TTAAAAAAT-ATAATA-ATAAA
*
47171433 TTATAAAAT-T--TAA-AAA
1 TTAAAAAATATAATAATAAA
* *
47171449 TATATAAAATA-AAT-AT--T
1 T-TAAAAAATATAATAATAAA
47171466 TTAAAAAATATAATAATAAA
1 TTAAAAAATATAATAATAAA
47171486 TTAAAA
1 TTAAAA
47171492 TATTATATTA
Statistics
Matches: 86, Mismatches: 16, Indels: 28
0.66 0.12 0.22
Matches are distributed among these distances:
16 12 0.14
17 25 0.29
18 15 0.17
19 7 0.08
20 19 0.22
21 3 0.03
22 5 0.06
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (20 bp):
TTAAAAAATATAATAATAAA
Found at i:47171513 original size:57 final size:53
Alignment explanation
Indices: 47171346--47171513 Score: 157
Period size: 57 Copynumber: 3.0 Consensus size: 53
47171336 ATAAAAATAC
47171346 ATAAATATTTTTAAAAAATATAATAATAAATTTAAAAA-TATAT-AA-AAATAAA
1 ATAAATA-TTTTAAAAAATATAATAATAAA-TTAAAAATTATATAAATAAATAAA
* *
47171398 A-AATATATTATTGACAAGAAATCATAATATATAAATTATAAAATT-TAAAAATATATAAA
1 ATAA-ATATT-TT-A-AA-AAAT-ATAATA-ATAAATTA-AAAATTATATAAATAAATAAA
47171457 ATAAATATTTTAAAAAATATAATAATAAATTAAAATATTATATTAATATTAAATAAA
1 ATAAATATTTTAAAAAATATAATAATAAATTAAAA-ATTATA-TAA-A-TAAATAAA
47171514 CTGAAAATCC
Statistics
Matches: 95, Mismatches: 4, Indels: 29
0.74 0.03 0.23
Matches are distributed among these distances:
51 4 0.04
52 9 0.09
53 12 0.13
54 10 0.11
55 10 0.11
56 12 0.13
57 19 0.20
58 5 0.05
59 12 0.13
60 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (53 bp):
ATAAATATTTTAAAAAATATAATAATAAATTAAAAATTATATAAATAAATAAA
Found at i:47171977 original size:20 final size:19
Alignment explanation
Indices: 47171929--47171969 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
47171919 TTTTTATAAG
*
47171929 TTTTTCTTC-TA-AAGAAT
1 TTTTTCTTCTTACCAGAAT
47171946 TTTTTCTTCTTACCAGAAT
1 TTTTTCTTCTTACCAGAAT
47171965 TTTTT
1 TTTTT
47171970 TTATCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
18 2 0.10
19 10 0.48
ACGTcount: A:0.22, C:0.15, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTTCTTCTTACCAGAAT
Found at i:47173051 original size:9 final size:9
Alignment explanation
Indices: 47173037--47173077 Score: 82
Period size: 9 Copynumber: 4.6 Consensus size: 9
47173027 TCTAAGTTTA
47173037 TAGAATTAT
1 TAGAATTAT
47173046 TAGAATTAT
1 TAGAATTAT
47173055 TAGAATTAT
1 TAGAATTAT
47173064 TAGAATTAT
1 TAGAATTAT
47173073 TAGAA
1 TAGAA
47173078 CTACTACTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.41
Consensus pattern (9 bp):
TAGAATTAT
Found at i:47184379 original size:39 final size:40
Alignment explanation
Indices: 47184334--47184501 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
47184324 CGGGGTTTAG
* * *
47184334 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
47184373 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
47184413 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
47184453 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
47184494 CCGGATAT
1 CCGGATAT
47184502 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:47184484 original size:41 final size:40
Alignment explanation
Indices: 47184357--47184501 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
47184347 CTCGCACAAG
* * * * *
47184357 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
47184397 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
47184437 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
47184478 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
47184502 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:47185733 original size:38 final size:38
Alignment explanation
Indices: 47185691--47185766 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
47185681 CAAGAACTCC
47185691 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
47185729 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
47185767 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:47197265 original size:43 final size:43
Alignment explanation
Indices: 47197190--47197297 Score: 157
Period size: 43 Copynumber: 2.5 Consensus size: 43
47197180 GTACCAATGT
**
47197190 AATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGCC
1 AATATCCCAGATATGGTCTTACATCAAATCTCATATCGATGCC
* *
47197233 AATAACCCAGCTATGGTCTTAC-TCAAAGTCTCATATCGATGCC
1 AATATCCCAGATATGGTCTTACATCAAA-TCTCATATCGATGCC
47197276 -ATATCCCAGATATGGTCTTACA
1 AATATCCCAGATATGGTCTTACA
47197298 CGTAATCTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 22 0.39
43 35 0.61
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (43 bp):
AATATCCCAGATATGGTCTTACATCAAATCTCATATCGATGCC
Found at i:47205762 original size:43 final size:42
Alignment explanation
Indices: 47205699--47205818 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 42
47205689 TACCATACCA
* *
47205699 ATGCCATATCCCTGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCCAGCTATGGTCTTACATGTAATCTCATATCG
*
47205741 ATGCCA-ATGGCCTAGCTATGGTCTTACATG-AAGTCTCATATCG
1 ATGCCATAT--CCCAGCTATGGTCTTACATGTAA-TCTCATATCG
* *
47205784 ATGCCATATCCCAGGTATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGCTATGGTCTTACATGTAATCT
47205819 TAGTAACCCT
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
41 2 0.03
42 28 0.42
43 35 0.52
44 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGCTATGGTCTTACATGTAATCTCATATCG
Found at i:47211981 original size:40 final size:39
Alignment explanation
Indices: 47211937--47212040 Score: 163
Period size: 39 Copynumber: 2.6 Consensus size: 39
47211927 AGCCCGGTTA
* *
47211937 TAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGGAAT
*
47211977 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGAAT
*
47212016 TAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
47212041 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 34 0.57
40 26 0.43
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGAAT
Found at i:47212010 original size:79 final size:81
Alignment explanation
Indices: 47211909--47212093 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 81
47211899 GCTACTCGTT
* * * *
47211909 CAAATGCGTTCGGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-ACTC
* *
47211971 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
* *
47211989 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
* *
47212053 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
47212069 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47212094 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 33 0.36
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGG
ATATAGTAACTTAGCA
Found at i:47213289 original size:56 final size:56
Alignment explanation
Indices: 47213222--47213453 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
47213212 TATTAGTTTA
47213222 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
47213278 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
47213334 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
47213390 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
47213446 TTGCCCAT
1 TTGCCCAT
47213454 CATCCCTTGT
Statistics
Matches: 173, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 173 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:47215460 original size:27 final size:27
Alignment explanation
Indices: 47215430--47215607 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
47215420 ATATTGAGTC
* * * *
47215430 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
47215457 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
47215484 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
47215512 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
47215539 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
47215566 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
47215593 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47215608 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:47215569 original size:82 final size:81
Alignment explanation
Indices: 47215451--47215606 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
47215441 TGCTATATAA
* *
47215451 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
47215516 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
47215533 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
47215597 CACTTAGTGC
65 CACTTAGTGC
47215607 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47223624 original size:27 final size:27
Alignment explanation
Indices: 47223594--47223771 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
47223584 ATATTGAGTC
* * * *
47223594 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
47223621 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
47223648 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
47223676 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
47223703 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
47223730 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
47223757 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47223772 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:47223733 original size:82 final size:81
Alignment explanation
Indices: 47223615--47223770 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
47223605 TGCTATATAA
* *
47223615 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
47223680 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
47223697 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
47223761 CACTTAGTGC
65 CACTTAGTGC
47223771 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:47231313 original size:40 final size:38
Alignment explanation
Indices: 47231276--47231405 Score: 156
Period size: 39 Copynumber: 3.3 Consensus size: 38
47231266 GCTACTCGTT
*
47231276 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACA-A-CCCGGATT-TAGTAACTCGCA
47231316 CAAATGCCTTCGGGACAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACAACCCGGATTTAGTAACTCGCA
* * * *
47231354 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGAC--AACCCGGATTTAGTAACTCGCA
47231393 CAAATGCCTTCGG
1 CAAATGCCTTCGG
47231406 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
37 1 0.01
38 31 0.38
39 34 0.41
40 16 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGGACAACCCGGATTTAGTAACTCGCA
Found at i:47231395 original size:39 final size:39
Alignment explanation
Indices: 47231276--47231458 Score: 178
Period size: 40 Copynumber: 4.6 Consensus size: 39
47231266 GCTACTCGTT
*
47231276 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TAGCCCGGATT-TAGTAACTCGCA
*
47231316 CAAATGCCTTCGGGAC-AACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTAGCCCGGATTTAGTAACTCGCA
* * *
47231354 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGAC-TAGCCCGGATTTAGTAACTCGCA
* * * * *
47231393 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-C-TAGCCCGGATTTAGTAAC-TCGCA
47231434 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGAC-TAGCCCGGA
47231459 CATCATTCGA
Statistics
Matches: 121, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
37 1 0.01
38 34 0.28
39 31 0.26
40 44 0.36
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTAGCCCGGATTTAGTAACTCGCA
Found at i:47232654 original size:56 final size:56
Alignment explanation
Indices: 47232587--47232873 Score: 549
Period size: 56 Copynumber: 5.1 Consensus size: 56
47232577 TATTAGTTTA
*
47232587 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
47232643 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
47232699 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
47232755 TTGCCCATGCTTCTTA-TTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
47232810 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
47232866 TTGCCCAT
1 TTGCCCAT
47232874 CATCCCTTGT
Statistics
Matches: 227, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
55 54 0.24
56 173 0.76
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:47232846 original size:111 final size:112
Alignment explanation
Indices: 47232587--47232873 Score: 558
Period size: 111 Copynumber: 2.6 Consensus size: 112
47232577 TATTAGTTTA
47232587 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
47232652 CTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
66 CTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
47232699 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
47232764 CTTCTTA-TTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
66 CTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
47232810 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCAT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCAT
47232874 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
111 102 0.59
112 72 0.41
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (112 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
CTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:47240095 original size:51 final size:50
Alignment explanation
Indices: 47240029--47240210 Score: 192
Period size: 49 Copynumber: 3.7 Consensus size: 50
47240019 TGAGGTCGCA
*
47240029 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-AAACTGTGGTCACG
*** *** *
47240080 TGTGTAGTACTAAGTGCAGGCTACTA--CGTATTAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTGTGGTCACG
* * * * * *
47240128 TGTGTAGTACAAAGTGCAGGCTACTACGTGTA-CC-AGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTG-TGGTCACG
47240177 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
47240211 AAATAGTTTC
Statistics
Matches: 106, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
48 37 0.35
49 39 0.37
50 4 0.04
51 26 0.25
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTGTGGTCACG
Found at i:47243233 original size:15 final size:15
Alignment explanation
Indices: 47243213--47243278 Score: 75
Period size: 15 Copynumber: 4.5 Consensus size: 15
47243203 GTATCTTGGG
47243213 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
47243228 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
47243243 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
47243258 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
47243272 TTTCTTT
1 TTTCTTT
47243279 TATCTTTATT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
14 14 0.32
15 27 0.61
16 3 0.07
ACGTcount: A:0.09, C:0.12, G:0.14, T:0.65
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:47243243 original size:30 final size:29
Alignment explanation
Indices: 47243208--47243284 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 29
47243198 TAATCGTATC
47243208 TTGGGTTTCTTTAT-TCTGGATTTCTTTAT
1 TTGGGTTTCTTTATCT-TGGATTTCTTTAT
47243237 TCTGGGTTT-TTCTATCTTGGATTTCTTTAT
1 T-TGGGTTTCTT-TATCTTGGATTTCTTTAT
*
47243267 TTGGTTTTCTTTTATCTT
1 TTGGGTTTC-TTTATCTT
47243285 TATTCCGTAA
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
29 9 0.21
30 30 0.71
31 3 0.07
ACGTcount: A:0.09, C:0.12, G:0.16, T:0.64
Consensus pattern (29 bp):
TTGGGTTTCTTTATCTTGGATTTCTTTAT
Found at i:47245528 original size:50 final size:49
Alignment explanation
Indices: 47245403--47245597 Score: 187
Period size: 50 Copynumber: 3.9 Consensus size: 49
47245393 ATCTATTGTG
* * * ** *
47245403 AGGTCACATGTGTAGTACTAAGTGCAGGCCATTATGCGTACCCGAAAACTGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTATA-CC--AGACTGT
* * **
47245455 -GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGA-TGGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTATACCAGACT-GT
* *
47245503 GAGGTCACGTGTGTAATACTAAGTGCAGGCTACTACGTATACCAGACTGT
1 -AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTATACCAGACTGT
* * * *
47245553 TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTATACCAGA
47245598 TAGCTTCGGC
Statistics
Matches: 119, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 39 0.33
50 40 0.34
51 35 0.29
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTATACCAGACTGT
Found at i:47245719 original size:39 final size:39
Alignment explanation
Indices: 47245676--47245830 Score: 220
Period size: 39 Copynumber: 4.0 Consensus size: 39
47245666 CGGGACATAT
* * *
47245676 TTCCAGCACGTAGCCTGTGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
*
47245715 TTCCAGCACATAGCCTGCGAACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* * * * *
47245754 TTCTAGCACATAGCCTGTGGACCTTCACTCTGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
*
47245793 TTCCAGCACATAGCCTGCGGGCCTTAAGTCCGGATATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATA
47245831 CTTCATCAAT
Statistics
Matches: 100, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:47253929 original size:78 final size:78
Alignment explanation
Indices: 47253843--47254041 Score: 228
Period size: 78 Copynumber: 2.6 Consensus size: 78
47253833 GAATTTAAAC
* * * * *
47253843 CCGGTATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAG-CCGGGACATATTTCCAGCACGTAGC
1 CCGGTATAATTCCAGCAC-ATAGCCTGCGGGACCTTAAGTCC-GGACATAATTCCAGCACATAGC
*
47253905 CTGCGGACCTTAAGT
64 CTGCGGACCTTAACT
* *
47253920 CCGGTTATAATTCCAGCACATAGCCTGC-GGACCTTAAGTCCGGATATAATTCTAGCACATAGCC
1 CCGG-TATAATTCCAGCACATAGCCTGCGGGACCTTAAGTCCGGACATAATTCCAGCACATAGCC
* *
47253984 TGTGGACCTTCACT
65 TGCGGACCTTAACT
*
47253998 CTGGATATAATTCCAGCACATAGCCTGCGGG-CCTTAAGTCCGGA
1 CCGG-TATAATTCCAGCACATAGCCTGCGGGACCTTAAGTCCGGA
47254042 TATACTTCAT
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
77 8 0.08
78 93 0.89
79 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (78 bp):
CCGGTATAATTCCAGCACATAGCCTGCGGGACCTTAAGTCCGGACATAATTCCAGCACATAGCCT
GCGGACCTTAACT
Found at i:47253934 original size:39 final size:39
Alignment explanation
Indices: 47253891--47254045 Score: 238
Period size: 39 Copynumber: 4.0 Consensus size: 39
47253881 CGGGACATAT
* *
47253891 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
47253930 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
* * * * *
47253969 TTCTAGCACATAGCCTGTGGACCTTCACTCTGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
*
47254008 TTCCAGCACATAGCCTGCGGGCCTTAAGTCCGGATATA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATA
47254046 CTTCATCAAT
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 103 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:47254042 original size:78 final size:78
Alignment explanation
Indices: 47253863--47254045 Score: 242
Period size: 78 Copynumber: 2.3 Consensus size: 78
47253853 ACCAGCTCGA
* * * * * * *
47253863 AGCCTGCGGGACTTTAG-CCGGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTA
1 AGCCTGCGGGCCTTAAGTCC-GGATATAATTCCAGCACATAGCCTGCGGACCTTAACTCCGGATA
47253927 TAATTCCAGCACAT
65 TAATTCCAGCACAT
* * * * *
47253941 AGCCTGCGGACCTTAAGTCCGGATATAATTCTAGCACATAGCCTGTGGACCTTCACTCTGGATAT
1 AGCCTGCGGGCCTTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCTTAACTCCGGATAT
47254006 AATTCCAGCACAT
66 AATTCCAGCACAT
47254019 AGCCTGCGGGCCTTAAGTCCGGATATA
1 AGCCTGCGGGCCTTAAGTCCGGATATA
47254046 CTTCATCAAT
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
78 89 0.98
79 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
AGCCTGCGGGCCTTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCTTAACTCCGGATAT
AATTCCAGCACAT
Found at i:47259375 original size:17 final size:16
Alignment explanation
Indices: 47259353--47259386 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
47259343 TCGAACCTAG
47259353 CTTTTGTTGTTTCTTTT
1 CTTTTGTT-TTTCTTTT
*
47259370 CTTTTGTTTTTGTTTT
1 CTTTTGTTTTTCTTTT
47259386 C
1 C
47259387 GATGGAGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.00, C:0.12, G:0.12, T:0.76
Consensus pattern (16 bp):
CTTTTGTTTTTCTTTT
Found at i:47261007 original size:16 final size:17
Alignment explanation
Indices: 47260986--47261024 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
47260976 CATGTAATGC
*
47260986 CCCAAAAATCTCGAAA-
1 CCCAAAAATCCCGAAAT
47261002 CCCAAAAATCCCGAAAT
1 CCCAAAAATCCCGAAAT
47261019 CCCAAA
1 CCCAAA
47261025 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.05, T:0.10
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:47261682 original size:21 final size:19
Alignment explanation
Indices: 47261640--47261682 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
47261630 TTTGTTTTTC
* *
47261640 TTTCTTTTCTTCTTGCCAA
1 TTTCTATTCTTCTTACCAA
47261659 TTTCTATTCTTCTCTACACAA
1 TTTCTATTCTTCT-TAC-CAA
47261680 TTT
1 TTT
47261683 TCTTTGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 12 0.60
20 2 0.10
21 6 0.30
ACGTcount: A:0.16, C:0.26, G:0.02, T:0.56
Consensus pattern (19 bp):
TTTCTATTCTTCTTACCAA
Found at i:47262393 original size:28 final size:29
Alignment explanation
Indices: 47262314--47262397 Score: 118
Period size: 29 Copynumber: 2.9 Consensus size: 29
47262304 AGCATGATTC
* *
47262314 TGAATGTGATTTGGGCCTAATGGACCATA
1 TGAATGTGATTTGGGCTTAATGGGCCATA
47262343 T-ACATGTGATTTGGGCTTAATGGGCCATA
1 TGA-ATGTGATTTGGGCTTAATGGGCCATA
*
47262372 TGAATATGA-TTGGGCTTAATGGGCCA
1 TGAATGTGATTTGGGCTTAATGGGCCA
47262398 GATACAAGTA
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
28 18 0.36
29 31 0.62
30 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (29 bp):
TGAATGTGATTTGGGCTTAATGGGCCATA
Found at i:47265280 original size:16 final size:17
Alignment explanation
Indices: 47265259--47265297 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
47265249 AGTTTAACGC
*
47265259 CCCAAAAATCTCGAAA-
1 CCCAAAAATCCCGAAAT
47265275 CCCAAAAATCCCGAAAT
1 CCCAAAAATCCCGAAAT
47265292 CCCAAA
1 CCCAAA
47265298 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.05, T:0.10
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:47278819 original size:34 final size:34
Alignment explanation
Indices: 47278776--47278843 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
47278766 GCATTTCTAT
*
47278776 TACTGTTACTGGGAT-GGGCTAAGG-CCTACATTGA
1 TACTGTTACT-GAATAGGGCTAAGGCCCTA-ATTGA
47278810 TACTGTTACTGAATAGGGCTAAGGCCCTAATTGA
1 TACTGTTACTGAATAGGGCTAAGGCCCTAATTGA
47278844 GATTGAACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 3 0.10
34 24 0.77
35 4 0.13
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (34 bp):
TACTGTTACTGAATAGGGCTAAGGCCCTAATTGA
Found at i:47281644 original size:15 final size:16
Alignment explanation
Indices: 47281615--47281644 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47281605 CAAACATCCT
47281615 TTAACACATTATCAAA
1 TTAACACATTATCAAA
47281631 TTAACACA-TATCAA
1 TTAACACATTATCAA
47281645 CAAAGCACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:47293858 original size:29 final size:29
Alignment explanation
Indices: 47293822--47293927 Score: 131
Period size: 29 Copynumber: 3.6 Consensus size: 29
47293812 GTCGTAATCG
***
47293822 TCCCTTTTCATATTTGATGGTTAAAACCA
1 TCCCTTTTCATATTTGATGGTTGTCACCA
* * * *
47293851 TCCTTTTTCATTAATCGATGGTCGTCACCA
1 TCCCTTTTCA-TATTTGATGGTTGTCACCA
*
47293881 TCCCTTTTCATAGTTGATGGTTGTCACCA
1 TCCCTTTTCATATTTGATGGTTGTCACCA
47293910 TCCCTTTTCATATTTGAT
1 TCCCTTTTCATATTTGAT
47293928 AGCCGAAGCT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 42 0.66
30 22 0.34
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.43
Consensus pattern (29 bp):
TCCCTTTTCATATTTGATGGTTGTCACCA
Found at i:47293900 original size:59 final size:59
Alignment explanation
Indices: 47293808--47293920 Score: 154
Period size: 59 Copynumber: 1.9 Consensus size: 59
47293798 TGTGCTAAAT
* * * *
47293808 GATGGTCGTAATCGTCCCTTTTCATATTTGATGGTTAAAACCATCCTTTTTCATTAATC
1 GATGGTCGTAACCATCCCTTTTCATAGTTGATGGTTAAAACCATCCCTTTTCATTAATC
* ***
47293867 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTTGTCACCATCCCTTTTCAT
1 GATGGTCGTAACCATCCCTTTTCATAGTTGATGGTTAAAACCATCCCTTTTCAT
47293921 ATTTGATAGC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
59 46 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (59 bp):
GATGGTCGTAACCATCCCTTTTCATAGTTGATGGTTAAAACCATCCCTTTTCATTAATC
Found at i:47295570 original size:45 final size:45
Alignment explanation
Indices: 47295511--47295596 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
47295501 CCGATATCAG
* * *
47295511 CTCACCAGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGTAT
1 CTCACCAGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATAGTAT
* **
47295556 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 CTCACCAGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATA
47295597 ATCAAGTCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
CTCACCAGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATAGTAT
Found at i:47295990 original size:43 final size:43
Alignment explanation
Indices: 47295926--47296080 Score: 256
Period size: 43 Copynumber: 3.6 Consensus size: 43
47295916 CCGGCATTAC
* *
47295926 GCCTGCTAGGCACGAAGGCCCGAATACACATTACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
47295969 GCCTGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
47296012 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
47296055 GCCTGCTAGGCACGAAGGGCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
47296081 TAATACCAGC
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 105 1.00
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:47296121 original size:38 final size:38
Alignment explanation
Indices: 47296078--47296152 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
47296068 GAAGGGCCGA
* * *
47296078 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
47296116 ATATAATATCAGCACGAAGCCTGCGGGATTTAACCCG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
47296153 AATACACATC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:47301827 original size:20 final size:20
Alignment explanation
Indices: 47301799--47301875 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 20
47301789 TAAACTATGA
* *
47301799 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
47301819 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* * *
47301839 TCTATTTCATTTACTTACTCT
1 ACCATTCCATTTACTTACT-T
*
47301860 -CCATTCTATTTACTTA
1 ACCATTCCATTTACTTA
47301876 GCATAAGCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
20 47 0.98
21 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.00, T:0.49
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:47302440 original size:89 final size:89
Alignment explanation
Indices: 47302319--47302481 Score: 272
Period size: 89 Copynumber: 1.8 Consensus size: 89
47302309 ATTTATCATT
* * *
47302319 CCTCTCCTTTTCATGCCCGTTGAACTGTTTAGAATACTATCGGATACGCAGGATAGCTGACACGA
1 CCTCTCCTTTTCATGCCCGTTGAACCGCTTAGAATACTATCGGATACACAGGATAGCTGACACGA
47302384 AATGTACTAAACATATAACTGTAA
66 AATGTACTAAACATATAACTGTAA
* * *
47302408 CCTCTCCTTTTTATGCCCGTTGAACCGCTTAGAATCCTATCGGATACACGGGATAGCTGACACGA
1 CCTCTCCTTTTCATGCCCGTTGAACCGCTTAGAATACTATCGGATACACAGGATAGCTGACACGA
47302473 AATGTACTA
66 AATGTACTA
47302482 TAACTGTAAC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 68 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (89 bp):
CCTCTCCTTTTCATGCCCGTTGAACCGCTTAGAATACTATCGGATACACAGGATAGCTGACACGA
AATGTACTAAACATATAACTGTAA
Found at i:47307729 original size:40 final size:40
Alignment explanation
Indices: 47307547--47307769 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
47307537 TCCTCGTTCA
* * * * *
47307547 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
47307586 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
47307626 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
47307666 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
47307706 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
47307746 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
47307770 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:47307778 original size:41 final size:41
Alignment explanation
Indices: 47307701--47307778 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
47307691 TTAGTATCTC
* * *
47307701 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
47307742 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
47307779 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:47309445 original size:13 final size:13
Alignment explanation
Indices: 47309424--47309455 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
47309414 TAATTATATG
*
47309424 CGATGGATCAGAT
1 CGATAGATCAGAT
47309437 CGATAGATCAGAT
1 CGATAGATCAGAT
47309450 CGATAG
1 CGATAG
47309456 CGTCGAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (13 bp):
CGATAGATCAGAT
Found at i:47315360 original size:74 final size:78
Alignment explanation
Indices: 47315262--47315428 Score: 216
Period size: 74 Copynumber: 2.2 Consensus size: 78
47315252 GCTCCTCGTT
* * *
47315262 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACT-CAC-AATGCCTTCGGGA-TAACCCGGAT
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCCACGAATGCCTTCGGGACTAACCCGGAT
47315324 TTA-AAACTCGCA
66 TTAGAAACTCGCA
* *
47315336 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTC-CACGAATGCCTTCGGGAC-TAACCCGG
* *
47315401 ATTTAGTATCTCGCA
64 ATTTAGAAACTCGCA
*
47315416 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
47315429 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
74 31 0.40
76 3 0.04
77 13 0.17
79 13 0.17
80 18 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCCACGAATGCCTTCGGGACTAACCCGGAT
TTAGAAACTCGCA
Found at i:47315381 original size:40 final size:39
Alignment explanation
Indices: 47315264--47315481 Score: 214
Period size: 40 Copynumber: 5.6 Consensus size: 39
47315254 TCCTCGTTCA
* * * *
47315264 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACT--CAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
47315301 AATGCCTTCGGGA--TAACCCGGATTTAA-AACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
47315337 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
47315377 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* ** * * * *
47315417 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
47315458 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
47315482 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
34 4 0.03
35 11 0.07
36 3 0.02
37 26 0.17
39 17 0.11
40 87 0.56
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:47315490 original size:41 final size:41
Alignment explanation
Indices: 47315413--47315490 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
47315403 TTAGTATCTC
* * *
47315413 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
47315454 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
47315491 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:47317036 original size:29 final size:29
Alignment explanation
Indices: 47317001--47317162 Score: 157
Period size: 29 Copynumber: 5.5 Consensus size: 29
47316991 CGATCACTCA
47317001 ATTATGAAAAAGGATGGTGACGACCATCG
1 ATTATGAAAAAGGATGGTGACGACCATCG
* **
47317030 ACTATGAAATGGGATGGTGACGACCATCG
1 ATTATGAAAAAGGATGGTGACGACCATCG
* * * **
47317059 AATTTTGAAAAAGGATAGCTTTA-G-CTGTCG
1 -ATTATGAAAAAGGAT-G-GTGACGACCATCG
* *
47317089 ATTATGAAAAGGGATGGTGACGACCATCA
1 ATTATGAAAAAGGATGGTGACGACCATCG
* *
47317118 ACTATGAAAAAGGGTGGTGACGACCATCG
1 ATTATGAAAAAGGATGGTGACGACCATCG
*
47317147 AATTATGAAAAGGGAT
1 -ATTATGAAAAAGGAT
47317163 AACTTCATCT
Statistics
Matches: 102, Mismatches: 25, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
27 2 0.02
28 2 0.02
29 67 0.66
30 27 0.26
31 2 0.02
32 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (29 bp):
ATTATGAAAAAGGATGGTGACGACCATCG
Found at i:47317150 original size:88 final size:88
Alignment explanation
Indices: 47317001--47317234 Score: 308
Period size: 88 Copynumber: 2.7 Consensus size: 88
47316991 CGATCACTCA
* * * *
47317001 ATTATGAAAAAGGATGGTGACGACCATCGACTATG-AAATGGGATGGTGACGACCATCGAATTTT
1 ATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAAGGG-TGGTGACGACCATCGAATTAT
* * *
47317065 GAAAAAGGATAGCTTTAGCTGTCG
65 GAAAAAGGATAACTTCAGCTATCG
47317089 ATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAAGGGTGGTGACGACCATCGAATTATG
1 ATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAAGGGTGGTGACGACCATCGAATTATG
* *
47317154 AAAAGGGATAACTTCATCTATCG
66 AAAAAGGATAACTTCAGCTATCG
* * * * * * *
47317177 ATTATGAAAGGGGATGGTAATGACCATCAACTAAGAAAAATGATGGTGAAGACCATCG
1 ATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAAGGGTGGTGACGACCATCG
47317235 TGATTCCACT
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
88 123 0.95
89 6 0.05
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (88 bp):
ATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAAGGGTGGTGACGACCATCGAATTATG
AAAAAGGATAACTTCAGCTATCG
Found at i:47317152 original size:59 final size:58
Alignment explanation
Indices: 47316989--47317162 Score: 199
Period size: 59 Copynumber: 2.9 Consensus size: 58
47316979 ACGACGTATC
* * *
47316989 GACGATCACTCAATTATGAAAAAGGATGGTGACGACCATCGACTATGAAATGGGATGGT
1 GACGACCA-TCAATTATGAAAAAGGATGGTGACGACCATCGATTATGAAAAGGGATGGT
* * * **
47317048 GACGACCATCGAATTTTGAAAAAGGATAGCTTTA-G-CTGTCGATTATGAAAAGGGATGGT
1 GACGACCATC-AATTATGAAAAAGGAT-G-GTGACGACCATCGATTATGAAAAGGGATGGT
* *
47317107 GACGACCATCAACTATGAAAAAGGGTGGTGACGACCATCGAATTATGAAAAGGGAT
1 GACGACCATCAATTATGAAAAAGGATGGTGACGACCATCG-ATTATGAAAAGGGAT
47317163 AACTTCATCT
Statistics
Matches: 94, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
56 2 0.02
57 2 0.02
58 19 0.20
59 67 0.71
60 2 0.02
61 2 0.02
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.22
Consensus pattern (58 bp):
GACGACCATCAATTATGAAAAAGGATGGTGACGACCATCGATTATGAAAAGGGATGGT
Found at i:47319808 original size:47 final size:47
Alignment explanation
Indices: 47319690--47319860 Score: 178
Period size: 45 Copynumber: 3.7 Consensus size: 47
47319680 AGGATATTTG
*
47319690 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAT
* *
47319738 -G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA-T
* *
47319781 AGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 -GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGC-AAT
* *
47319830 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
47319861 GCTTATGGGC
Statistics
Matches: 106, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
44 2 0.02
45 30 0.28
46 28 0.26
47 29 0.27
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAT
Found at i:47319854 original size:46 final size:45
Alignment explanation
Indices: 47319695--47319868 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
47319685 ATTTGGGCAT
* *
47319695 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
* * *
47319740 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC---GC
*
47319785 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
* *
47319833 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47319869 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
42 6 0.05
44 2 0.02
45 29 0.26
46 35 0.32
47 27 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:47322806 original size:15 final size:15
Alignment explanation
Indices: 47322786--47322849 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
47322776 GTATCTTGGG
47322786 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
47322801 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
47322816 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
47322831 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
47322844 TTTCTT
1 TTTCTT
47322850 GTTATCTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.13
14 4 0.09
15 33 0.73
16 2 0.04
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:47325280 original size:46 final size:45
Alignment explanation
Indices: 47325225--47325399 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
47325215 TATTTGGGCA
47325225 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-ATGCAAATG
* * * *
47325271 TTCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA-GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAA--ATG
* * * *
47325316 CATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAATG
* * *
47325364 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
47325400 GGCGGGTTAC
Statistics
Matches: 107, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 5 0.05
46 60 0.56
47 27 0.25
48 4 0.04
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAATG
Found at i:47325380 original size:93 final size:93
Alignment explanation
Indices: 47325221--47325392 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
47325211 AGGATATTTG
* * **
47325221 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCAAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAG
47325286 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * * *
47325314 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTCATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAG
47325379 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
47325393 GCTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:47336398 original size:27 final size:27
Alignment explanation
Indices: 47336362--47336558 Score: 254
Period size: 27 Copynumber: 7.3 Consensus size: 27
47336352 GGCATAATCA
*
47336362 TCATTTTACCTTACAGGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACAG
* * * **
47336389 CCATTGTACCCTACAGGGGCATTATGG
1 TCATTTTACCCTACAGGGGTATTACAG
47336416 TCATTTTACCCTACAGGGGTATTAC-G
1 TCATTTTACCCTACAGGGGTATTACAG
* * *
47336442 TTCATTCTACCCTACAGGGGCATTACAA
1 -TCATTTTACCCTACAGGGGTATTACAG
* *
47336470 TCATTTTACCCTATAGGGATATTA-AG
1 TCATTTTACCCTACAGGGGTATTACAG
47336496 TCATTTTACCCTACAGGGGTATTACAG
1 TCATTTTACCCTACAGGGGTATTACAG
* *
47336523 TCATTTTACCCTATAGGGATATTACAG
1 TCATTTTACCCTACAGGGGTATTACAG
47336550 TCATTTTAC
1 TCATTTTAC
47336559 TTATTTTGGG
Statistics
Matches: 145, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
26 24 0.17
27 121 0.83
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACAG
Found at i:47336520 original size:80 final size:81
Alignment explanation
Indices: 47336362--47336558 Score: 263
Period size: 80 Copynumber: 2.4 Consensus size: 81
47336352 GGCATAATCA
* * * * *
47336362 TCATTTTACCTTACAGGGGTATTACAGCCATTGTACCCTACAGGGGCATTATGGTCATTTTACCC
1 TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAGGGACATTATAGTCATTTTACCC
47336427 TACAGGGGTATTAC-G
66 TACAGGGGTATTACAG
* * * * *
47336442 TTCATTCTACCCTACAGGGGCATTACAATCATTTTACCCTATAGGGATATTA-AGTCATTTTACC
1 -TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAGGGACATTATAGTCATTTTACC
47336506 CTACAGGGGTATTACAG
65 CTACAGGGGTATTACAG
* *
47336523 TCATTTTACCCTATAGGGATATTACAGTCATTTTAC
1 TCATTTTACCCTACAGGGGTATTACAGTCATTTTAC
47336559 TTATTTTGGG
Statistics
Matches: 100, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
80 57 0.57
81 43 0.43
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (81 bp):
TCATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTACAGGGACATTATAGTCATTTTACCC
TACAGGGGTATTACAG
Found at i:47340155 original size:33 final size:34
Alignment explanation
Indices: 47340105--47340172 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
47340095 CTAAGCCTAG
* *
47340105 ATCAGTAACAATCTGGGCCTGAGCCTTATTCAGT
1 ATCAGTAACAATCTGGGCCTGAGCCCTATACAGT
* *
47340139 ATCAGT-ACAGTCTGGGCCTTAGCCCTATACAGT
1 ATCAGTAACAATCTGGGCCTGAGCCCTATACAGT
47340172 A
1 A
47340173 ATAGTGTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 24 0.80
34 6 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (34 bp):
ATCAGTAACAATCTGGGCCTGAGCCCTATACAGT
Found at i:47340171 original size:27 final size:26
Alignment explanation
Indices: 47340141--47340199 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
47340131 TATTCAGTAT
* *
47340141 CAGTACAGTCTGGGCCTTAGCCCTATA
1 CAGTACAGTCT-GGCCTAAGCCCAATA
* *
47340168 CAGTAATAGTGTGGCCTAAGCCCAATA
1 CAGT-ACAGTCTGGCCTAAGCCCAATA
47340195 CAGTA
1 CAGTA
47340200 TTAGTACAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.04
27 21 0.78
28 5 0.19
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (26 bp):
CAGTACAGTCTGGCCTAAGCCCAATA
Found at i:47340204 original size:27 final size:27
Alignment explanation
Indices: 47340153--47340204 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
47340143 GTACAGTCTG
* *
47340153 GGCCTTAGCCCTATACAGTAATAGTGT
1 GGCCTAAGCCCAATACAGTAATAGTGT
*
47340180 GGCCTAAGCCCAATACAGTATTAGT
1 GGCCTAAGCCCAATACAGTAATAGT
47340205 ACAGTGTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (27 bp):
GGCCTAAGCCCAATACAGTAATAGTGT
Found at i:47340563 original size:27 final size:27
Alignment explanation
Indices: 47340541--47340696 Score: 107
Period size: 27 Copynumber: 5.4 Consensus size: 27
47340531 ATTTTACCAA
47340541 ACAGGGGTATTACGGTCAGTTTACCCT
1 ACAGGGGTATTACGGTCAGTTTACCCT
* * *
47340568 ACAAGGGCATTACGGTCATTTTACCCT
1 ACAGGGGTATTACGGTCAGTTTACCCT
* * *
47340595 ATAGGGGTATTATGGTCA-TTGTACCCC
1 ACAGGGGTATTACGGTCAGTT-TACCCT
* *
47340622 ATAGGGGCATTACGATCATTACGGTCATTTTACCCT
1 ACA-GGG------G-T-ATTACGGTCAGTTTACCCT
* *
47340658 ACAGGAGTATTACGGTCATTTTACCCT
1 ACAGGGGTATTACGGTCAGTTTACCCT
* *
47340685 ACAAGGGCATTA
1 ACAGGGGTATTA
47340697 AGGTTATTTT
Statistics
Matches: 103, Mismatches: 15, Indels: 22
0.74 0.11 0.16
Matches are distributed among these distances:
26 2 0.02
27 74 0.72
28 4 0.04
29 1 0.01
34 1 0.01
35 3 0.03
36 16 0.16
37 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (27 bp):
ACAGGGGTATTACGGTCAGTTTACCCT
Found at i:47340670 original size:36 final size:36
Alignment explanation
Indices: 47340603--47340677 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
47340593 CTATAGGGGT
* * *
47340603 ATTATGGTCATTGTACCCCATAGGGGCATTACGATC
1 ATTACGGTCATTGTACCCCACAGGAGCATTACGATC
* * * *
47340639 ATTACGGTCATTTTACCCTACAGGAGTATTACGGTC
1 ATTACGGTCATTGTACCCCACAGGAGCATTACGATC
47340675 ATT
1 ATT
47340678 TTACCCTACA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (36 bp):
ATTACGGTCATTGTACCCCACAGGAGCATTACGATC
Found at i:47340693 original size:63 final size:63
Alignment explanation
Indices: 47340575--47340696 Score: 181
Period size: 63 Copynumber: 1.9 Consensus size: 63
47340565 CCTACAAGGG
* * * * *
47340575 CATTACGGTCATTTTACCCTATAGGGGTATTATGGTCATTGTACCCCATAGGGGCATTACGAT
1 CATTACGGTCATTTTACCCTACAGGAGTATTACGGTCATTGTACCCCACAAGGGCATTACGAT
* *
47340638 CATTACGGTCATTTTACCCTACAGGAGTATTACGGTCATTTTACCCTACAAGGGCATTA
1 CATTACGGTCATTTTACCCTACAGGAGTATTACGGTCATTGTACCCCACAAGGGCATTA
47340697 AGGTTATTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 52 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (63 bp):
CATTACGGTCATTTTACCCTACAGGAGTATTACGGTCATTGTACCCCACAAGGGCATTACGAT
Found at i:47340705 original size:27 final size:27
Alignment explanation
Indices: 47340638--47340709 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
47340628 GCATTACGAT
47340638 CATTACGGTCATTTTACCCTACAGGAG
1 CATTACGGTCATTTTACCCTACAGGAG
*
47340665 TATTACGGTCATTTTACCCTACAAGG-G
1 CATTACGGTCATTTTACCCTAC-AGGAG
* *
47340692 CATTAAGGTTATTTTACC
1 CATTACGGTCATTTTACC
47340710 TATTTTAGGG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 37 0.93
28 3 0.08
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (27 bp):
CATTACGGTCATTTTACCCTACAGGAG
Found at i:47341599 original size:30 final size:31
Alignment explanation
Indices: 47341563--47341625 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
47341553 AAGGACCAAG
47341563 AACCAAATCAAGAACAAGAAA-TACTTACCC
1 AACCAAATCAAGAACAAGAAAGTACTTACCC
*
47341593 AACCAAATCAAGAGCAAGAAAGTACTTACCC
1 AACCAAATCAAGAACAAGAAAGTACTTACCC
47341624 AA
1 AA
47341626 ACTTAGTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 20 0.65
31 11 0.35
ACGTcount: A:0.52, C:0.25, G:0.10, T:0.13
Consensus pattern (31 bp):
AACCAAATCAAGAACAAGAAAGTACTTACCC
Found at i:47344072 original size:46 final size:46
Alignment explanation
Indices: 47344020--47344122 Score: 188
Period size: 46 Copynumber: 2.2 Consensus size: 46
47344010 ACTTGATAGT
47344020 GTCTTACACTGGCTCTTCATCAAGTCAATGCCATGTCCCAGACAGG
1 GTCTTACACTGGCTCTTCATCAAGTCAATGCCATGTCCCAGACAGG
* *
47344066 GTCTTACACTGGCTCTTCATCAAGTCAATGCCATGTCCCATACATG
1 GTCTTACACTGGCTCTTCATCAAGTCAATGCCATGTCCCAGACAGG
47344112 GTCTTACACTG
1 GTCTTACACTG
47344123 ACTATCGAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.29
Consensus pattern (46 bp):
GTCTTACACTGGCTCTTCATCAAGTCAATGCCATGTCCCAGACAGG
Found at i:47350621 original size:29 final size:29
Alignment explanation
Indices: 47350555--47350684 Score: 199
Period size: 29 Copynumber: 4.5 Consensus size: 29
47350545 TATAGTAAGT
* * *
47350555 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAATTTGAAC
** *
47350583 TTGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAATTTGAAC
47350612 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAATTTGAAC
47350641 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAATTTGAAC
47350670 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
47350685 CAATTTCATA
Statistics
Matches: 93, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 18 0.19
29 75 0.81
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAATTTGAAC
Found at i:47358443 original size:29 final size:29
Alignment explanation
Indices: 47358377--47358506 Score: 199
Period size: 29 Copynumber: 4.5 Consensus size: 29
47358367 TATAGTAAGT
* * *
47358377 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAATTTGAAC
* *
47358405 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAATTTGAAC
*
47358434 CCACACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAATTTGAAC
47358463 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAATTTGAAC
47358492 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
47358507 CAATTTCATG
Statistics
Matches: 93, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 19 0.20
29 74 0.80
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAATTTGAAC
Found at i:47378420 original size:14 final size:15
Alignment explanation
Indices: 47378380--47378418 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
47378370 TTTGGCTATT
47378380 GCATATATAAATTTA
1 GCATATATAAATTTA
* *
47378395 -CATATTTCAATTTA
1 GCATATATAAATTTA
47378409 GCATATATAA
1 GCATATATAA
47378419 TTCACATTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (15 bp):
GCATATATAAATTTA
Found at i:47379580 original size:27 final size:27
Alignment explanation
Indices: 47379558--47379682 Score: 139
Period size: 27 Copynumber: 4.6 Consensus size: 27
47379548 TTAGTTTACC
**
47379558 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGCG
* * *
47379585 AAACTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGCG
47379612 AAATTACCAAAATACCCCTGATTT-CTG
1 AAATTACCAAAATACCCCTGATTTGC-G
47379639 AAATTACCAAAATACCCCTGATTT-CTG
1 AAATTACCAAAATACCCCTGATTTGC-G
**
47379666 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
47379683 TCGACCTATA
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
27 87 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGCG
Found at i:47379623 original size:54 final size:54
Alignment explanation
Indices: 47379558--47379682 Score: 171
Period size: 54 Copynumber: 2.3 Consensus size: 54
47379548 TTAGTTTACC
* * *
47379558 AAATTACCAAAATACCCCT-AGTTTGTAAAACTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGA-TTTCTAAAACTACCAAAATACCCCTGATTTCTG
* *
47379612 AAATTACCAAAATACCCCTGATTTCTGAAATTACCAAAATACCCCTGATTTCTG
1 AAATTACCAAAATACCCCTGATTTCTAAAACTACCAAAATACCCCTGATTTCTG
**
47379666 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
47379683 TCGACCTATA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
54 62 0.98
55 1 0.02
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTCTAAAACTACCAAAATACCCCTGATTTCTG
Found at i:47379709 original size:54 final size:54
Alignment explanation
Indices: 47379558--47379698 Score: 142
Period size: 54 Copynumber: 2.6 Consensus size: 54
47379548 TTAGTTTACC
** * * * *
47379558 AAATTACCAAAATACCCCT-AGTTTGTAAAACTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGA-CCTATAAAATTACCAAAATACCCCTGATTTCTG
** * *
47379612 AAATTACCAAAATACCCCTGATTTCTGAAATTACCAAAATACCCCTGATTTCTG
1 AAATTACCAAAATACCCCTGACCTATAAAATTACCAAAATACCCCTGATTTCTG
**
47379666 AAATTACTGAAATA-CCCTCGACCTATAAAATTA
1 AAATTACCAAAATACCCCT-GACCTATAAAATTA
47379699 TTGAAATACC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
53 4 0.05
54 69 0.93
55 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGACCTATAAAATTACCAAAATACCCCTGATTTCTG
Found at i:47379751 original size:27 final size:27
Alignment explanation
Indices: 47379612--47379793 Score: 129
Period size: 27 Copynumber: 6.7 Consensus size: 27
47379602 CTGATTTGTG
* *
47379612 AAATTACCAAAATACCC-CTGATTT-CTG
1 AAATTACCGAAATACCCTC-GATTTAC-A
* *
47379639 AAATTACCAAAATACCC-CTGATTT-CTG
1 AAATTACCGAAATACCCTC-GATTTAC-A
* ** *
47379666 AAATTACTGAAATACCCTCGACCTATA
1 AAATTACCGAAATACCCTCGATTTACA
** * **
47379693 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGATTTACA
* *
47379720 AAATTACCGAAGTACCCTTGATTTACA
1 AAATTACCGAAATACCCTCGATTTACA
* ***
47379747 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCGAAATACCCTCGATTTACA
47379774 AAATTACCGAAATACCCTCG
1 AAATTACCGAAATACCCTCG
47379794 TAGGGTAGAA
Statistics
Matches: 128, Mismatches: 25, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
27 127 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTACA
Found at i:47379808 original size:27 final size:27
Alignment explanation
Indices: 47379775--47380267 Score: 684
Period size: 27 Copynumber: 18.3 Consensus size: 27
47379765 CGATTTACAA
47379775 AATTACCGAAATA-CCCTCGTAGGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
*
47379802 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
47379829 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
47379856 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
47379883 AATTACCGGAATTA-CCTTGTAGGGTAG
1 AATTACC-GAAATACCCCTGTAGGGTAG
*
47379910 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
47379937 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
47379964 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** * *
47379991 AAGTATTGCAATACCCCAGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
47380018 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
47380045 AATTATCGAAATACCCCTATATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
47380072 AATTACCGAAATACTCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
47380099 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
47380126 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
47380153 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
47380180 AATTGTCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
47380207 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
47380234 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
47380261 AATTACC
1 AATTACC
47380268 ATTTTGCCCC
Statistics
Matches: 415, Mismatches: 48, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
26 4 0.01
27 403 0.97
28 8 0.02
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:47380983 original size:27 final size:26
Alignment explanation
Indices: 47380895--47380984 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
47380885 ATTCTGTTAA
* *
47380895 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
* *
47380922 GTGGCTATGCCACAAATATCTATTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
47380949 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
*
47380976 GTGACTCTG
1 GTGGCTCTG
47380985 TCAGACTATC
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 8 0.15
27 41 0.75
28 6 0.11
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:47381171 original size:6 final size:6
Alignment explanation
Indices: 47381133--47381221 Score: 58
Period size: 6 Copynumber: 14.3 Consensus size: 6
47381123 TTGCATTCAC
* *
47381133 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
47381183 -TCACCTA ATTCTG ATTCTG ATCCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
47381222 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 18
0.70 0.11 0.20
Matches are distributed among these distances:
5 4 0.06
6 47 0.73
7 11 0.17
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:47381182 original size:31 final size:31
Alignment explanation
Indices: 47381133--47381212 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
47381123 TTGCATTCAC
* * *
47381133 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTCACCTAATACTG
*
47381165 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
47381196 ATTCTGATCCTGATTCT
1 ATTCTGATTCTGATTCT
47381213 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 36 0.84
32 7 0.16
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:47383278 original size:54 final size:54
Alignment explanation
Indices: 47383172--47383358 Score: 182
Period size: 54 Copynumber: 3.5 Consensus size: 54
47383162 TTAGCTTACC
*
47383172 AAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTATAAAATTATCAAAATACCCCTGA-TTTGTA
* * *
47383226 AAATTACCAAAATACCCCTGATTTATGAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTATAAAATTATCAAAATACCCCTGATTTGTA
* ** * ** ** *
47383280 TAATTACTGAAATACCCTTGACATATAAAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCTGATTTATAAAATTATCAAAATACCCCT-GATTTGTA
* * *
47383334 AATTTACCAAAGTACCCTTGATTTA
1 AAATTACCAAAATACCCCTGATTTA
47383359 CAGAATTACC
Statistics
Matches: 107, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
53 4 0.04
54 101 0.94
55 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTATAAAATTATCAAAATACCCCTGATTTGTA
Found at i:47383286 original size:27 final size:27
Alignment explanation
Indices: 47383172--47383271 Score: 157
Period size: 27 Copynumber: 3.7 Consensus size: 27
47383162 TTAGCTTACC
47383172 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
47383199 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
47383226 AAATTACCAAAATACCCCT-GATTTATG
1 AAATTACCAAAATACCCCTAG-TTTGTA
47383253 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
47383272 GATTTGTGTA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
26 1 0.01
27 67 0.99
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:47383292 original size:27 final size:27
Alignment explanation
Indices: 47383172--47383296 Score: 155
Period size: 27 Copynumber: 4.6 Consensus size: 27
47383162 TTAGCTTACC
*
47383172 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTG
* *
47383199 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTG
*
47383226 AAATTACCAAAATACCCCTGATTTATG
1 AAATTACCAAAATACCCCTGATTTGTG
47383253 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTG
* **
47383280 TAATTACTGAAATACCC
1 AAATTACCAAAATACCC
47383297 TTGACATATA
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 88 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTG
Found at i:47383367 original size:27 final size:27
Alignment explanation
Indices: 47383167--47383407 Score: 126
Period size: 27 Copynumber: 8.9 Consensus size: 27
47383157 ATACTTTAGC
* *
47383167 TTACCAAATTACCAAAATACCCCT-AGT
1 TTACAAAATTACCAAAATACCCTTGA-T
** * *
47383194 TTGTAAAATTATCAAAATACCCCT-AGT
1 TTACAAAATTACCAAAATACCCTTGA-T
** *
47383221 TTGTAAAATTACCAAAATACCCCTGAT
1 TTACAAAATTACCAAAATACCCTTGAT
** *
47383248 TTATGAAATTACCAAAATACCCCTGAT
1 TTACAAAATTACCAAAATACCCTTGAT
**** ** *
47383275 TTGTGTAATTACTGAAATACCCTTGAC
1 TTACAAAATTACCAAAATACCCTTGAT
* * *** * *
47383302 ATATAAAATTATTGAAATACCCTCGAC
1 TTACAAAATTACCAAAATACCCTTGAT
** * *
47383329 TTGTAAATTTACCAAAGTACCCTTGAT
1 TTACAAAATTACCAAAATACCCTTGAT
* **** *
47383356 TTACAGAATTACCGTTTTACCCTCGAT
1 TTACAAAATTACCAAAATACCCTTGAT
47383383 TTACAAAATTACCAAAATACCCTTG
1 TTACAAAATTACCAAAATACCCTTG
47383408 TAGGGTAGAA
Statistics
Matches: 170, Mismatches: 43, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
27 169 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (27 bp):
TTACAAAATTACCAAAATACCCTTGAT
Found at i:47383422 original size:27 final size:27
Alignment explanation
Indices: 47383389--47383746 Score: 448
Period size: 27 Copynumber: 13.3 Consensus size: 27
47383379 CGATTTACAA
*
47383389 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * ** *
47383416 AAATACCGAAATACCCCTACACGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
47383443 AATTATCAAAATTCCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
47383470 AATTACCAAAATACCCCTGTAGGATAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
47383497 AATTACCAGAATGCCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
47383524 AATTACCGAATTACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
47383551 AATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
** *
47383578 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
**
47383605 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
47383632 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
47383659 AATTACCGAAATACCCATGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
47383686 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
47383713 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
47383739 AATTACCA
1 AATTACCA
47383747 TTTTGCCCCT
Statistics
Matches: 284, Mismatches: 47, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
26 16 0.06
27 268 0.94
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:47384224 original size:22 final size:22
Alignment explanation
Indices: 47384172--47384236 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
47384162 TTAAAGCCTT
* *
47384172 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTGTGTGCCAAC
* *
47384194 C-AACATATGGCTGTGTGCCAAC
1 CTGA-TTATGGCTGTGTGCCAAC
*
47384216 CTGATTATGGATGTGTGCCAA
1 CTGATTATGGCTGTGTGCCAA
47384237 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTGTGTGCCAAC
Found at i:47384426 original size:27 final size:27
Alignment explanation
Indices: 47384395--47384496 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 27
47384385 ATTCTGTTAA
* *
47384395 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* *
47384422 TTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
47384449 GTGGCTCTGCCATAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * * *
47384476 GTGACTCTGTCATAATATCTG
1 GTGGCTATGCCACAATATCTG
47384497 ATAACTGAGC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.79
28 6 0.10
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:47384671 original size:6 final size:6
Alignment explanation
Indices: 47384656--47384718 Score: 74
Period size: 6 Copynumber: 10.3 Consensus size: 6
47384646 ATTCTGTTAC
* * *
47384656 CTGATA CTGATT CTGATT CTGATT CTGATT CTG-TCAG CTAATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT
47384705 CTGATT CTGATT CT
1 CTGATT CTGATT CT
47384719 AGTTTTGATA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
5 1 0.02
6 45 0.92
7 2 0.04
8 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:47384685 original size:37 final size:37
Alignment explanation
Indices: 47384644--47384718 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
47384634 TTCTAATTTT
* *
47384644 TGATTCTGTTACCTGATACTGATTCTGATTCTGATTC
1 TGATTCTGTCACCTAATACTGATTCTGATTCTGATTC
* *
47384681 TGATTCTGTCAGCTAATTCTGATTCTGATTCTGATTC
1 TGATTCTGTCACCTAATACTGATTCTGATTCTGATTC
47384718 T
1 T
47384719 AGTTTTGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.47
Consensus pattern (37 bp):
TGATTCTGTCACCTAATACTGATTCTGATTCTGATTC
Found at i:47386674 original size:27 final size:27
Alignment explanation
Indices: 47386644--47386829 Score: 182
Period size: 27 Copynumber: 6.9 Consensus size: 27
47386634 TTAGTTTACC
*
47386644 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
47386671 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
47386698 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*
47386725 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*** **
47386752 AAATTATTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
** *
47386779 AAATT-CTTGAAATA-CCCTCGACTTGTA
1 AAATTAC-CAAAATACCCCT-GATTTGTA
* *
47386806 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCCTGATTT
47386830 ACAGAATTAC
Statistics
Matches: 136, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
26 4 0.03
27 127 0.93
28 5 0.04
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:47386779 original size:81 final size:81
Alignment explanation
Indices: 47386644--47386829 Score: 207
Period size: 81 Copynumber: 2.3 Consensus size: 81
47386634 TTAGTTTACC
* * **
47386644 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTAC-CAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCGAGCCTGTAAAATT-CTCAA
* *
47386708 AATACCC-CTGATTTGTG
65 AATACCCTC-GACTTGTA
* ** **
47386725 AAATTACCAAAATACCCCTGATTTGTGAAATTATTGAAATACCCTCGA-CCTGTAAAATTCTTGA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCC-CGAGCCTGTAAAATTCTCAA
47386789 AATACCCTCGACTTGTA
65 AATACCCTCGACTTGTA
* *
47386806 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCCTGATTT
47386830 ACAGAATTAC
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 1 0.01
81 85 0.96
82 3 0.03
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCGAGCCTGTAAAATTCTCAAA
ATACCCTCGACTTGTA
Found at i:47386837 original size:27 final size:26
Alignment explanation
Indices: 47386805--47386879 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
47386795 CTCGACTTGT
47386805 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAA-TACCCTTGATTTAC
* *** *
47386832 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACC-AAATACCCTTGATTTAC
47386859 AAAATTACCGAAATACCCTTG
1 AAAATTACC-AAATACCCTTG
47386880 TAGGGTAGAA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGATTTAC
Found at i:47386894 original size:27 final size:27
Alignment explanation
Indices: 47386861--47387647 Score: 899
Period size: 27 Copynumber: 29.3 Consensus size: 27
47386851 CGATTTACAA
*
47386861 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
47386888 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
47386915 AATAATCGAAATACCCC-GATAAGGTAG
1 AATTACCGAAATACCCCTG-TAGGGTAG
*
47386942 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
47386969 AATTACC-AGAATGTCCCTATAGGGAAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
47386996 AATTACCGAAATAACCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
47387023 AATTACC-AGAATACCTCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
47387050 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
47387077 AATTACCGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
47387104 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
47387131 AATTATCGAAATACCCCGGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
47387158 AATTACCGGAATGCCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
47387185 AATTACC-AGAATGCCCCTATAGGGAAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* * * *
47387212 AATTACCGAACTAACCCTATATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
47387239 AATTACC-AGAATACCTCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
47387266 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
47387293 AATTACCTAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
47387320 AAATACCGAAATACCCCTATAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
47387347 AATTATCAAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
47387374 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
47387401 AATTACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
47387428 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
47387455 AATTACC-AGAATTCCTCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
47387482 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
47387509 AATTACCGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
47387535 AATTATCGCAATACCCCTGTAGGGGAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
47387562 AATTACCAAAATACCCCTGTATGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
47387589 AATTACTAAAATACCCCTGTAGGG-CG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
47387615 AATTACCGAGATA-CGTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
47387641 AATTACC
1 AATTACC
47387648 ATTTTGCCCC
Statistics
Matches: 643, Mismatches: 103, Indels: 29
0.83 0.13 0.04
Matches are distributed among these distances:
25 8 0.01
26 45 0.07
27 584 0.91
28 6 0.01
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:47388126 original size:22 final size:22
Alignment explanation
Indices: 47388074--47388138 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
47388064 TTAAAGCCTT
* *
47388074 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
47388096 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* * *
47388118 TTGATTATGGCTGTCTGCCAA
1 CTGATTATGGCTCTGTGCCAA
47388139 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:47388327 original size:27 final size:27
Alignment explanation
Indices: 47388297--47388398 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
47388287 ATTCTGTTAA
* *
47388297 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
47388324 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
47388351 GTGGCTCTGCCACAATATCTGTATCCG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
47388378 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
47388399 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:47388355 original size:54 final size:53
Alignment explanation
Indices: 47388297--47388398 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
47388287 ATTCTGTTAA
* * * * *
47388297 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCCGGTGACTATGCCAC-AATATCTGTTCTG
* *
47388351 GTGGCTCTGCCACAATATCTGTATCCGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCCGGTGACTATGCCACAATATCTG
47388399 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCCGGTGACTATGCCACAATATCTGTTCTG
Found at i:47388573 original size:6 final size:6
Alignment explanation
Indices: 47388535--47388628 Score: 61
Period size: 6 Copynumber: 15.3 Consensus size: 6
47388525 TTGCATTCAC
* * *
47388535 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTTTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
47388585 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCT- ATTCT- AGTTCTG AT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
47388629 AATGTTTCTT
Statistics
Matches: 69, Mismatches: 10, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
5 9 0.13
6 47 0.68
7 11 0.16
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:47388590 original size:37 final size:38
Alignment explanation
Indices: 47388535--47388614 Score: 126
Period size: 37 Copynumber: 2.1 Consensus size: 38
47388525 TTGCATTCAC
* *
47388535 ATTCTGATTTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTTTTGATTCTGTCACCTAATACTGATTCTG
*
47388573 ATTCTGA-TTTTGATTCTGTCACCTAATTCTGATTCTG
1 ATTCTGATTTTTGATTCTGTCACCTAATACTGATTCTG
47388610 ATTCT
1 ATTCT
47388615 ATTCTAGTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 32 0.82
38 7 0.18
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (38 bp):
ATTCTGATTTTTGATTCTGTCACCTAATACTGATTCTG
Found at i:47392105 original size:359 final size:359
Alignment explanation
Indices: 47391446--47392157 Score: 1415
Period size: 359 Copynumber: 2.0 Consensus size: 359
47391436 TTTTGCGACA
47391446 CTTTCAAAAGTAATGGCATTTCTGATGATGCCATTCACCTTCGGTTATTCCCTTTTTCACTAAGA
1 CTTTCAAAAGTAATGGCATTTCTGATGATGCCATTCACCTTCGGTTATTCCCTTTTTCACTAAGA
47391511 AACAAAGCTAAACAGTGGTTGAACTCGTTACCATGAGGGTCCATCACTATTTGGGAACAAATGAC
66 AACAAAGCTAAACAGTGGTTGAACTCGTTACCATGAGGGTCCATCACTATTTGGGAACAAATGAC
47391576 CGAAAAATTTCTACTAAAATATTTTTCACCGGCTAAAACGGCTAAGTTACGTAATGATATCTCTT
131 CGAAAAATTTCTACTAAAATATTTTTCACCGGCTAAAACGGCTAAGTTACGTAATGATATCTCTT
47391641 CTTTTGTGCAGATGGACTTAGAAACACTTTATGATGCATGGGAGAGATACAAGGGTCTATTGCGA
196 CTTTTGTGCAGATGGACTTAGAAACACTTTATGATGCATGGGAGAGATACAAGGGTCTATTGCGA
47391706 AGGTGTTCTCACCATGGGTTACCTCTATGGTTGCAAGTTCAAATGTTTTACAATGGTGTGAATCC
261 AGGTGTTCTCACCATGGGTTACCTCTATGGTTGCAAGTTCAAATGTTTTACAATGGTGTGAATCC
47391771 CTCAACAAGACAGATGATTGACACAGGTTATTCC
326 CTCAACAAGACAGATGATTGACACAGGTTATTCC
47391805 CTTTCAAAAGTAATGGCATTTCTGATGATGCCATTCACCTTCGGTTATTCCCTTTTTCACTAAGA
1 CTTTCAAAAGTAATGGCATTTCTGATGATGCCATTCACCTTCGGTTATTCCCTTTTTCACTAAGA
47391870 AACAAAGCTAAACAGTGGTTGAACTCGTTACCATGAGGGTCCATCACTATTTGGGAACAAATGAC
66 AACAAAGCTAAACAGTGGTTGAACTCGTTACCATGAGGGTCCATCACTATTTGGGAACAAATGAC
47391935 CGAAAAATTTCTACTAAAATATTTTTCACCGGCTAAAACGGCTAAGTTACGTAATGATATCTCTT
131 CGAAAAATTTCTACTAAAATATTTTTCACCGGCTAAAACGGCTAAGTTACGTAATGATATCTCTT
*
47392000 CTTTTGTGCGGATGGACTTAGAAACACTTTATGATGCATGGGAGAGATACAAGGGTCTATTGCGA
196 CTTTTGTGCAGATGGACTTAGAAACACTTTATGATGCATGGGAGAGATACAAGGGTCTATTGCGA
47392065 AGGTGTTCTCACCATGGGTTACCTCTATGGTTGCAAGTTCAAATGTTTTACAATGGTGTGAATCC
261 AGGTGTTCTCACCATGGGTTACCTCTATGGTTGCAAGTTCAAATGTTTTACAATGGTGTGAATCC
47392130 CTCAACAAGACAGATGATTGACACAGGT
326 CTCAACAAGACAGATGATTGACACAGGT
47392158 GCTGGAGGAA
Statistics
Matches: 352, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
359 352 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (359 bp):
CTTTCAAAAGTAATGGCATTTCTGATGATGCCATTCACCTTCGGTTATTCCCTTTTTCACTAAGA
AACAAAGCTAAACAGTGGTTGAACTCGTTACCATGAGGGTCCATCACTATTTGGGAACAAATGAC
CGAAAAATTTCTACTAAAATATTTTTCACCGGCTAAAACGGCTAAGTTACGTAATGATATCTCTT
CTTTTGTGCAGATGGACTTAGAAACACTTTATGATGCATGGGAGAGATACAAGGGTCTATTGCGA
AGGTGTTCTCACCATGGGTTACCTCTATGGTTGCAAGTTCAAATGTTTTACAATGGTGTGAATCC
CTCAACAAGACAGATGATTGACACAGGTTATTCC
Found at i:47407022 original size:40 final size:40
Alignment explanation
Indices: 47406985--47407168 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
47406975 GCTACTCGTT
* *
47406985 CAAATGCCTTCGGGACATAGTCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
47407025 CAAATGCATTCGGGACTTAACCCGGATT-TAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
47407065 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
47407104 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
47407145 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
47407169 ACATCATTCA
Statistics
Matches: 118, Mismatches: 18, Indels: 16
0.78 0.12 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 72 0.61
41 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:47407097 original size:79 final size:81
Alignment explanation
Indices: 47406987--47407169 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
47406977 TACTCGTTCA
* * * *
47406987 AATGCCTTCGGGACATAGTCCGG-TTATAGTAACTCGCACAAATGCATTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTC-GGATCTTAACCCAG
* * *
47407050 ATTTAGTGAC-TCGCACC
65 ATATAGTCACTTAGCA-C
* **
47407067 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCAGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTCGGATCTTAACCCAGA
47407130 TATAGTCACTTAGCAC
66 TATAGTCACTTAGCAC
*
47407146 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
47407170 CATCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCATTCGGATCTTAACCCAGA
TATAGTCACTTAGCAC
Found at i:47414837 original size:79 final size:80
Alignment explanation
Indices: 47414741--47414919 Score: 222
Period size: 79 Copynumber: 2.2 Consensus size: 80
47414731 CGTTCAAATT
* * * *
47414741 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGA-CTTAACCCGGATTT
1 CCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATAT
* * *
47414804 AGTGAC-TCGCACCAATG
64 AGTCACTTAGCA-CAAAG
**
47414821 CCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
1 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAG
47414885 TCACTTAGCACAAAG
66 TCACTTAGCACAAAG
47414900 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
47414920 CATCATTCGA
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 59 0.69
80 24 0.28
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAG
TCACTTAGCACAAAG
Found at i:47414919 original size:40 final size:40
Alignment explanation
Indices: 47414716--47414919 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
47414706 CGAAATTTAA
** * *
47414716 CCGGATATAGCT-ACTCGTTCAAATTCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
47414756 CCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
47414796 CCGGATTTAGTGACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47414835 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
47414875 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
47414915 CCGGA
1 CCGGA
47414920 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Done.