Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 150 of 349
Found at i:47724383 original size:27 final size:27
Alignment explanation
Indices: 47724362--47724441 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
47724352 CTATTCAGTT
*
47724362 AGAGTTTGCCATATGTATTATTCCTTC
1 AGAGTTTGCCATATGTACTATTCCTTC
* *
47724389 AGTGTTTGCCATATGAACTATTCCTTC
1 AGAGTTTGCCATATGTACTATTCCTTC
* *
47724416 AGAGTTCGCCATATTTACTATTCCTT
1 AGAGTTTGCCATATGTACTATTCCTT
47724442 TTGTGTTTAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.42
Consensus pattern (27 bp):
AGAGTTTGCCATATGTACTATTCCTTC
Found at i:47724454 original size:27 final size:27
Alignment explanation
Indices: 47724365--47724456 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
47724355 TTCAGTTAGA
*
47724365 GTTTGCCATATGTATTATTCCTTCAGT
1 GTTTGCCATATGTACTATTCCTTCAGT
* *
47724392 GTTTGCCATATGAACTATTCCTTCAGA
1 GTTTGCCATATGTACTATTCCTTCAGT
* * **
47724419 GTTCGCCATATTTACTATTCCTTTTGT
1 GTTTGCCATATGTACTATTCCTTCAGT
*
47724446 GTTTACCATAT
1 GTTTGCCATAT
47724457 CTTCTAGTCT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.46
Consensus pattern (27 bp):
GTTTGCCATATGTACTATTCCTTCAGT
Found at i:47724471 original size:54 final size:54
Alignment explanation
Indices: 47724362--47724473 Score: 125
Period size: 54 Copynumber: 2.1 Consensus size: 54
47724352 CTATTCAGTT
* * * * *
47724362 AGAGTTTGCCATATGTATTATTCCTTCAGTGTTTGCCATATGAACTATTCCTTC
1 AGAGTTCGCCATATGTACTATTCCTTCAGTGTTTACCATATCAACTAGTCCTTC
* ** ** *
47724416 AGAGTTCGCCATATTTACTATTCCTTTTGTGTTTACCATATCTTCTAGTCTTTC
1 AGAGTTCGCCATATGTACTATTCCTTCAGTGTTTACCATATCAACTAGTCCTTC
47724470 AGAG
1 AGAG
47724474 CTAACCACAA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.44
Consensus pattern (54 bp):
AGAGTTCGCCATATGTACTATTCCTTCAGTGTTTACCATATCAACTAGTCCTTC
Found at i:47724571 original size:27 final size:27
Alignment explanation
Indices: 47724506--47724575 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
47724496 CGGGGCCTAC
47724506 CATACTTACCATTCTT-CAAAGCTAGT
1 CATACTTACCATTCTTCCAAAGCTAGT
* * ** * *
47724532 CATACCTATCATTCTTCCATGGTTTGT
1 CATACTTACCATTCTTCCAAAGCTAGT
47724559 CATACTTACCATTCTTC
1 CATACTTACCATTCTTC
47724576 TTTGTCAAGG
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
26 14 0.40
27 21 0.60
ACGTcount: A:0.24, C:0.29, G:0.07, T:0.40
Consensus pattern (27 bp):
CATACTTACCATTCTTCCAAAGCTAGT
Found at i:47727858 original size:7 final size:7
Alignment explanation
Indices: 47727842--47727990 Score: 50
Period size: 7 Copynumber: 21.9 Consensus size: 7
47727832 AATAAATGAA
*
47727842 ATAATTT
1 ATAATAT
47727849 ATAATAT
1 ATAATAT
47727856 ATAATAT
1 ATAATAT
*
47727863 A-AAAAT
1 ATAATAT
* *
47727869 GTAAGTTT
1 ATAA-TAT
*
47727877 TTAA-A-
1 ATAATAT
*
47727882 ATAATGT
1 ATAATAT
47727889 ATAATAT
1 ATAATAT
*
47727896 A-AATAA
1 ATAATAT
47727902 AT-ATAT
1 ATAATAT
47727908 A-AGATAT
1 ATA-ATAT
47727915 ATAAGT-T
1 ATAA-TAT
47727922 A-AA-AT
1 ATAATAT
47727927 ATAATAT
1 ATAATAT
47727934 ATAATA-
1 ATAATAT
*
47727940 ATAATTT
1 ATAATAT
*
47727947 ACAA-ATT
1 ATAATA-T
* *
47727954 TTGAAAAT
1 AT-AATAT
47727962 ATAAATAAT
1 AT-AAT-AT
*
47727971 ATAATAA
1 ATAATAT
47727978 ATAATAT
1 ATAATAT
47727985 ATAATA
1 ATAATA
47727991 AATTAAAAAT
Statistics
Matches: 103, Mismatches: 22, Indels: 34
0.65 0.14 0.21
Matches are distributed among these distances:
5 5 0.05
6 22 0.21
7 56 0.54
8 15 0.15
9 5 0.05
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:47727916 original size:21 final size:21
Alignment explanation
Indices: 47727892--47727936 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
47727882 ATAATGTATA
47727892 ATATAA-ATAAATATATAAGAT
1 ATATAAGATAAA-ATATAAGAT
* *
47727913 ATATAAGTTAAAATATAATAT
1 ATATAAGATAAAATATAAGAT
47727934 ATA
1 ATA
47727937 ATAATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
ATATAAGATAAAATATAAGAT
Found at i:47728349 original size:17 final size:18
Alignment explanation
Indices: 47728296--47728393 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
47728286 AATCATATCT
*
47728296 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
47728315 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
47728333 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
47728350 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
47728368 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
47728385 TCTAAGATT
1 TCTAAGATT
47728394 ACATATCATT
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
17 31 0.42
18 32 0.44
19 10 0.14
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:47728354 original size:35 final size:35
Alignment explanation
Indices: 47728296--47728402 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
47728286 AATCATATCT
47728296 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
47728333 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
47728368 TCTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
47728403 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:47737361 original size:44 final size:44
Alignment explanation
Indices: 47737289--47737376 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
47737279 ATTACATGTA
47737289 TCGCATCCATAATGAACTCAAACAAACTCAACGAGCTCAGATGC
1 TCGCATCCATAATGAACTCAAACAAACTCAACGAGCTCAGATGC
* *** * *
47737333 TCGCATCCATAGTGAACTTGGACCAACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAAACAAACTCAACGAGCTCAGATGC
47737377 CTCATACATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.19
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCAAACAAACTCAACGAGCTCAGATGC
Found at i:47740748 original size:40 final size:40
Alignment explanation
Indices: 47740667--47740848 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
47740657 CAACCAAGTA
** * *
47740667 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
47740706 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
47740746 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
47740786 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
47740826 CCTTCGAGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
47740849 CATCCGAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.10
40 121 0.90
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:47748752 original size:40 final size:40
Alignment explanation
Indices: 47748671--47748852 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
47748661 CAACCAAGTA
** * *
47748671 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
47748710 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
47748750 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
47748790 CCTTCAGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
47748830 CCTTCAGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
47748853 CATCCGAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.10
40 121 0.90
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:47756508 original size:44 final size:44
Alignment explanation
Indices: 47756442--47756527 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
47756432 TACATGTATT
*
47756442 GCATCCATAATAGACTCGGACCAACTCAACAAGCTCGGATGCTC
1 GCATCCATAATAGACTCAGACCAACTCAACAAGCTCGGATGCTC
* * *
47756486 GCATCCATAATTA-ACTCAGACCAATTCACCGAGCTCGGATGC
1 GCATCCATAA-TAGACTCAGACCAACTCAACAAGCTCGGATGC
47756528 ATCATACATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 35 0.95
45 2 0.05
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.20
Consensus pattern (44 bp):
GCATCCATAATAGACTCAGACCAACTCAACAAGCTCGGATGCTC
Found at i:47758137 original size:50 final size:50
Alignment explanation
Indices: 47758017--47758258 Score: 220
Period size: 49 Copynumber: 4.9 Consensus size: 50
47758007 CAAAGCTATC
* * * * * * * **
47758017 TGGTACGCATAGTAGCCTACACTTAGTACTACAGATGCGACC-AATTACC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATA
* **
47758066 TGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATA
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATA
* * * * *
47758116 TGATACACGTAGTAGCCTGCACTTAGTGCTACACACGTGATCGAAGTTATA
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TAATA
* * * * *
47758167 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AATAATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATA
* * *
47758216 CGGTACACGTAGTAGCTTTCACATT-GTACTACACACGTGACCT
1 TGGTACACGTAGTAGCCTGCAC-TTAGTACTACACACGTGACCT
47758259 CACAATAGAT
Statistics
Matches: 155, Mismatches: 34, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
49 70 0.45
50 47 0.30
51 38 0.25
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATAATA
Found at i:47765110 original size:49 final size:49
Alignment explanation
Indices: 47765046--47765220 Score: 244
Period size: 49 Copynumber: 3.5 Consensus size: 49
47765036 CTGGTACGCA
*
47765046 TAGTAGCCTGCACTTAGTACTACACATGTGACTAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* * * *
47765095 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAT-CGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCG-GTACACG
* *
47765146 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
*
47765195 TAGTAGCTTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
47765221 CATGACCTCA
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
49 63 0.57
50 10 0.09
51 38 0.34
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:47765157 original size:51 final size:49
Alignment explanation
Indices: 47765033--47765227 Score: 239
Period size: 49 Copynumber: 3.9 Consensus size: 49
47765023 TAGCCAAAGC
* * * *
47765033 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
47765082 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * *
47765133 TAT-CGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCG-GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
47765182 AATCCGGTACACGTAGTAGCTTGCACTTAGTACTACACACATGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
47765228 TCACAATAGA
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
49 77 0.62
50 10 0.08
51 38 0.30
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:47765212 original size:100 final size:100
Alignment explanation
Indices: 47765039--47765221 Score: 330
Period size: 100 Copynumber: 1.8 Consensus size: 100
47765029 AAGCTATCTG
* * *
47765039 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
47765104 GCACTTAGTACTACACACGTGATCGAAGTTATCGA
66 GCACTTAGTACTACACACGTGATCGAAGTTATCGA
*
47765139 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCTT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
47765204 GCACTTAGTACTACACAC
66 GCACTTAGTACTACACAC
47765222 ATGACCTCAC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTTATCGA
Found at i:47769601 original size:12 final size:13
Alignment explanation
Indices: 47769584--47769621 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
47769574 ATCCTGGAAT
47769584 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
47769596 ATTAAGAACACATA
1 ATTAAGAACA-AGA
47769610 ATTAAGAACAAG
1 ATTAAGAACAAG
47769622 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:47769655 original size:20 final size:20
Alignment explanation
Indices: 47769617--47769655 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
47769607 ATAATTAAGA
* *
47769617 ACAAGTCAAATATTTATAAT
1 ACAAGTCAAATAGTAATAAT
*
47769637 ACAATTCAAATAGTAATAA
1 ACAAGTCAAATAGTAATAA
47769656 CAAGATCCGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (20 bp):
ACAAGTCAAATAGTAATAAT
Found at i:47778371 original size:31 final size:31
Alignment explanation
Indices: 47778334--47778398 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
47778324 TCTTGTAACT
47778334 TTTTCCAAAACCATGATGTGAACCTTGGGTC
1 TTTTCCAAAACCATGATGTGAACCTTGGGTC
*
47778365 TTTTCCAAAACCATGATGTGAACTTTGGGTC
1 TTTTCCAAAACCATGATGTGAACCTTGGGTC
47778396 TTT
1 TTT
47778399 ATCTGATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (31 bp):
TTTTCCAAAACCATGATGTGAACCTTGGGTC
Found at i:47787369 original size:29 final size:28
Alignment explanation
Indices: 47787333--47787410 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
47787323 TCATGAGATT
47787333 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
47787363 -GCACTAAGTGTACGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
47787390 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
47787411 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:47787628 original size:174 final size:174
Alignment explanation
Indices: 47787363--47787690 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
47787353 AAATTGTACA
*
47787363 GCACTAAGTGTACGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTACGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
47787428 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
47787493 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
**
47787537 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTACGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
47787602 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
47787667 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
47787691 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTACGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:47795508 original size:29 final size:28
Alignment explanation
Indices: 47795474--47795545 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 28
47795464 TCATGAGATT
*
47795474 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
47795504 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
47795531 TGGCACTAAGTGTGC
1 -GGCACTAAGTGTGC
47795546 ATGGTTGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:47795814 original size:175 final size:174
Alignment explanation
Indices: 47795504--47795832 Score: 586
Period size: 175 Copynumber: 1.9 Consensus size: 174
47795494 AAATTGTACA
*
47795504 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCATGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCACTATG
* *
47795569 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
47795634 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
47795678 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACATAT
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCAC-TAT
*
47795743 GTGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCA
65 GTGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCA
47795808 ATTTTGGACAGCGGAAAAGGTAAGT
130 ATTTTGGACAGCGGAAAAGGTAAGT
47795833 ACCTTGAGTT
Statistics
Matches: 147, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
174 57 0.39
175 90 0.61
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCACGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:47798341 original size:21 final size:22
Alignment explanation
Indices: 47798301--47798346 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
47798291 ATGACCCCTG
*
47798301 TTTCCAAAATTTTTCCTTTT-T
1 TTTCCAAAATTTTTCATTTTAT
47798322 TTTCCAAAA-TTTTCTATTTTAT
1 TTTCCAAAATTTTTC-ATTTTAT
47798344 TTT
1 TTT
47798347 AAAATGATCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 13 0.59
22 4 0.18
ACGTcount: A:0.22, C:0.15, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTCCAAAATTTTTCATTTTAT
Found at i:47805060 original size:30 final size:30
Alignment explanation
Indices: 47805024--47805090 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
47805014 GTTCTTAAGC
* * *
47805024 TTAATTTTTATCCTAATAAATC-CTTTATTT
1 TTAATTTGTATCCAAATAAATCTC-TAATTT
47805054 TTAATTTGTATCCAAATAAATCTCTAATTT
1 TTAATTTGTATCCAAATAAATCTCTAATTT
47805084 TTAATTT
1 TTAATTT
47805091 ATACTTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 32 0.97
31 1 0.03
ACGTcount: A:0.33, C:0.12, G:0.01, T:0.54
Consensus pattern (30 bp):
TTAATTTGTATCCAAATAAATCTCTAATTT
Found at i:47806896 original size:61 final size:62
Alignment explanation
Indices: 47806780--47806898 Score: 154
Period size: 61 Copynumber: 1.9 Consensus size: 62
47806770 CCTTGAATTA
* * *
47806780 TTTTTAAAATTTTTAATTAAGCTCTTCAAAATTTTGAAAATTTCTATTTACCTTTTAATTTG
1 TTTTGAAAATTTTTAATCAAGCTCTTCAAAATTTTGAAAATTTCTATTAACCTTTTAATTTG
* *
47806842 TTTTGAAAA-TTTTAATCAAGCT-TTCTAAAATTTTGGAAATTT-TGATTAATCTTTTAA
1 TTTTGAAAATTTTTAATCAAGCTCTTC-AAAATTTTGAAAATTTCT-ATTAACCTTTTAA
47806899 AAAATTAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
60 4 0.08
61 38 0.76
62 8 0.16
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (62 bp):
TTTTGAAAATTTTTAATCAAGCTCTTCAAAATTTTGAAAATTTCTATTAACCTTTTAATTTG
Found at i:47807981 original size:20 final size:22
Alignment explanation
Indices: 47807943--47807982 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
47807933 TGATAATATG
47807943 TTTTGATATAACAAATTAAATT
1 TTTTGATATAACAAATTAAATT
*
47807965 TTTTGA-ATAA-AAGTTAAA
1 TTTTGATATAACAAATTAAA
47807983 GTTGAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 4 0.24
22 6 0.35
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (22 bp):
TTTTGATATAACAAATTAAATT
Found at i:47813487 original size:43 final size:43
Alignment explanation
Indices: 47813435--47813572 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
47813425 TAGGGTCTTT
*
47813435 CACGAAATCGATTAACGATGCCAATGTCCCAGACATAGTATTA
1 CACGTAATCGATTAACGATGCCAATGTCCCAGACATAGTATTA
* * * *
47813478 CACGTAATCG-TATAATGATGCCAATGTCCTAGACATGGTCTTA
1 CACGTAATCGAT-TAACGATGCCAATGTCCCAGACATAGTATTA
* * ** * * *
47813521 TACATAATC-ACAATACAATGCCAATGTCCCAGACATTGTGTTA
1 CACGTAATCGATTA-ACGATGCCAATGTCCCAGACATAGTATTA
*
47813564 CATGTAATC
1 CACGTAATC
47813573 TCATCTCGGT
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.03
43 73 0.97
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (43 bp):
CACGTAATCGATTAACGATGCCAATGTCCCAGACATAGTATTA
Found at i:47822307 original size:43 final size:43
Alignment explanation
Indices: 47822242--47822375 Score: 150
Period size: 43 Copynumber: 3.1 Consensus size: 43
47822232 AGCTCACACA
* *
47822242 ATGCCATATCCCAGATATGGTCTTACATGTAAAT-AC-ATATCG
1 ATGCCATATCCCAGACATGGTCTTACACGTAAATCACAATA-CG
*
47822284 ATGCCACTATCCCAGACAGGGTCTTACACG-AAATCACAATACG
1 ATGCCA-TATCCCAGACATGGTCTTACACGTAAATCACAATACG
* * * *
47822327 ATGTCAATGTCCCAGACATGGTCTTACACGT-AATCTCAATACA
1 ATG-CCATATCCCAGACATGGTCTTACACGTAAATCACAATACG
47822370 ATGCCA
1 ATGCCA
47822376 ATGTCCAATT
Statistics
Matches: 78, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
42 12 0.15
43 61 0.78
44 5 0.06
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCATATCCCAGACATGGTCTTACACGTAAATCACAATACG
Found at i:47831919 original size:25 final size:25
Alignment explanation
Indices: 47831877--47831925 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
47831867 CTTTATTATT
* *
47831877 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
47831902 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
47831926 GGTCCTCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:47832198 original size:40 final size:40
Alignment explanation
Indices: 47832148--47832244 Score: 167
Period size: 40 Copynumber: 2.4 Consensus size: 40
47832138 TTGCGAATAC
*
47832148 CTGATAGCTTGTGTGAGTAGCTCATATAGCTATATCCTGA
1 CTGACAGCTTGTGTGAGTAGCTCATATAGCTATATCCTGA
*
47832188 CTGACAGCTTGTGTGAGTAGCTCATGTAGCTATATCCTGA
1 CTGACAGCTTGTGTGAGTAGCTCATATAGCTATATCCTGA
*
47832228 CTAACAGCTTGTGTGAG
1 CTGACAGCTTGTGTGAG
47832245 CAGACCCGTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.33
Consensus pattern (40 bp):
CTGACAGCTTGTGTGAGTAGCTCATATAGCTATATCCTGA
Found at i:47832959 original size:171 final size:171
Alignment explanation
Indices: 47832674--47833029 Score: 631
Period size: 171 Copynumber: 2.1 Consensus size: 171
47832664 GTTAACCCTC
47832674 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGGGACACGCCTGTGTCCCCTACCCG
1 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGGGACACGCCTGTGTCCCCTACCCG
* *
47832739 TGTGGAATTAATTGAATTTATTTTCTATTTCGAACCTGCAGGGGTTTTCACACGGCCAAGCACAC
66 TGTGGAATTAATTGAATTTATTTTCTATTTCGAACCTACAGGGGTTTTCACACAGCCAAGCACAC
47832804 ACCCGTGTCTCTGGCCCGTGTCCTTCACATGGCCTGCCTTA
131 ACCCGTGTCTCTGGCCCGTGTCCTTCACATGGCCTGCCTTA
* *
47832845 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTGCTTTGGGACATGCCTGTGTCCCCTACCCG
1 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGGGACACGCCTGTGTCCCCTACCCG
*
47832910 TGTGGCATTAATTGAATTTATTTTCTATTTCGAACCTACAGGGGTTTTCACACAGCCAAGCACAC
66 TGTGGAATTAATTGAATTTATTTTCTATTTCGAACCTACAGGGGTTTTCACACAGCCAAGCACAC
** *
47832975 TTCCGTGTCTCTGGCCCGTGTCCTTTACATGGCCTGCCTTA
131 ACCCGTGTCTCTGGCCCGTGTCCTTCACATGGCCTGCCTTA
*
47833016 ACACGCCTGTGTGG
1 ACACGCCCGTGTGG
47833030 TCGCCTGTGT
Statistics
Matches: 176, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
171 176 1.00
ACGTcount: A:0.18, C:0.30, G:0.24, T:0.28
Consensus pattern (171 bp):
ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGGGACACGCCTGTGTCCCCTACCCG
TGTGGAATTAATTGAATTTATTTTCTATTTCGAACCTACAGGGGTTTTCACACAGCCAAGCACAC
ACCCGTGTCTCTGGCCCGTGTCCTTCACATGGCCTGCCTTA
Found at i:47837845 original size:40 final size:40
Alignment explanation
Indices: 47837797--47837984 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
47837787 GCAAACACAT
* * *
47837797 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
47837837 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
47837877 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
47837917 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
47837957 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
47837985 TCCAATGCTC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:47844504 original size:40 final size:40
Alignment explanation
Indices: 47844459--47844610 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
47844449 ATAACCACAA
* * *
47844459 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
47844499 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
47844539 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
47844579 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
47844611 CATTCAAATG
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:47852626 original size:46 final size:44
Alignment explanation
Indices: 47852521--47852638 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 44
47852511 GGGGTAAGGT
47852521 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATTTCATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATTTCATG
* * * *
47852567 GCTGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTTGA-G
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC--ACAT-TTCATG
47852613 GCCGATGCATGTCCCAGACATGTCTT
1 GCCGATGCATGTCCCAGACATGTCTT
47852639 GTACTAGCGC
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 12 0.19
45 13 0.21
46 35 0.56
47 3 0.05
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACACATTTCATG
Found at i:47852739 original size:94 final size:92
Alignment explanation
Indices: 47852570--47852740 Score: 218
Period size: 94 Copynumber: 1.8 Consensus size: 92
47852560 TTTCATGGCT
* **
47852570 GATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTTGAGGCCGATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAGACATG
***
47852635 TCTTGTACTAGCGCTCGTCACAATACC
66 TCTAACACTAGCGCTCGTCACAATACC
* * * *
47852662 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGCCGATGCATTTCCTATAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATAATGAGGCCGATGCATGTCCCAGAC
47852726 ATGTCTAACACTAGC
63 ATGTCTAACACTAGC
47852741 TCACACAACT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
92 4 0.06
93 13 0.20
94 48 0.73
95 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCGATGCATGTCCCAGACATG
TCTAACACTAGCGCTCGTCACAATACC
Found at i:47868566 original size:27 final size:27
Alignment explanation
Indices: 47868505--47868634 Score: 127
Period size: 27 Copynumber: 4.8 Consensus size: 27
47868495 CATCACACAG
* *
47868505 GGGCAAAACT-GTCATCTTAGCATATAA
1 GGGCAAAA-TAGTCATTTTACCATATAA
* * * *
47868532 GAGAAAAATATTCATTTTACCATATAT
1 GGGCAAAATAGTCATTTTACCATATAA
* *
47868559 GGGCAAAATAGTCAATTTACCGTATAA
1 GGGCAAAATAGTCATTTTACCATATAA
* * *
47868586 GGGCAAAATAGTCATTTTACCACACAG
1 GGGCAAAATAGTCATTTTACCATATAA
* *
47868613 GGGCAATACAGTCATTTTACCA
1 GGGCAAAATAGTCATTTTACCA
47868635 CAAAGAGGTC
Statistics
Matches: 83, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
26 1 0.01
27 82 0.99
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCATATAA
Found at i:47868617 original size:54 final size:54
Alignment explanation
Indices: 47868498--47868634 Score: 143
Period size: 54 Copynumber: 2.5 Consensus size: 54
47868488 AAACATACAT
* *
47868498 CACACAGGGGCAAAACT-GTC-ATCTTAGCATATAAGAGAAAAATATTCATTTTAC
1 CACACAGGGGCAAAA-TAGTCAAT-TTACCATATAAGAGAAAAATAGTCATTTTAC
* * * * * *
47868552 CATATATGGGCAAAATAGTCAATTTACCGTATAAGGGCAAAATAGTCATTTTAC
1 CACACAGGGGCAAAATAGTCAATTTACCATATAAGAGAAAAATAGTCATTTTAC
* * *
47868606 CACACAGGGGCAATACAGTCATTTTACCA
1 CACACAGGGGCAAAATAGTCAATTTACCA
47868635 CAAAGAGGTC
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
53 1 0.02
54 63 0.95
55 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (54 bp):
CACACAGGGGCAAAATAGTCAATTTACCATATAAGAGAAAAATAGTCATTTTAC
Found at i:47871432 original size:46 final size:46
Alignment explanation
Indices: 47871365--47871486 Score: 151
Period size: 46 Copynumber: 2.7 Consensus size: 46
47871355 TGTGTGCTAG
47871365 TGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCC-CATTGATGAGAGCCAA
* * *
47871411 TGTAAGACATGTCTGGGACATGCATCAG--CATTGAGATGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCCATT--GATGAGAGCCAA
* *
47871457 TGTAAGACAAGTCTAGGACATGCATCGGCC
1 TGTAAGACATGTCTGGGACATGCATCGGCC
47871487 TCGAAATATG
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.06
46 61 0.94
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCCATTGATGAGAGCCAA
Found at i:47871610 original size:49 final size:49
Alignment explanation
Indices: 47871363--47871718 Score: 199
Period size: 49 Copynumber: 7.5 Consensus size: 49
47871353 TATGTGTGCT
* * * * *
47871363 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * * * * *
47871409 AATGTAAGACATGTCTGGGACAT-GCATC-AGCATTG--AGATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTCGATAGATGAAAGCC
** * * * * * *
47871455 AGTGTAAGACAAGTCTAGGACAT-GCATCGGCCTCGAAATATGCAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
** * * * * * *
47871503 AGTGTAAGACCCATCTGGGATATGGCGTC-AGCTTGAT-G-TG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
* * *
47871547 AGTATAAGACCTGTCTGGGACATGGCATCGACAC-CGGTAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGCC
* * * *
47871596 AGTGTAAGACCTGTCTAGGACACGGCATC-AGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTCGATAGATGAAAGCC
* * * *
47871645 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-TGCTAA-CT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATG-AAAGCC
47871692 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
47871719 GTCGGCATTT
Statistics
Matches: 237, Mismatches: 55, Indels: 34
0.73 0.17 0.10
Matches are distributed among these distances:
44 25 0.11
45 3 0.01
46 68 0.29
47 15 0.06
48 49 0.21
49 76 0.32
50 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGCC
Found at i:47871670 original size:142 final size:145
Alignment explanation
Indices: 47871413--47871718 Score: 355
Period size: 142 Copynumber: 2.2 Consensus size: 145
47871403 AGAGCCAATG
** *
47871413 TAAGA-CATGTCTGGGACAT-GCATC-AGCA-TTG-AGATGAGAGCTAGTGTAAGACAAGTCTAG
1 TAAGACCATGTCTGGGACATGGCATCGA-CACCGGTAGATGAGAGCCAGTGTAAGACAAGTCTAG
* * * * *
47871473 GACATGCATCGGCCTCGAAATATGCAAGCTAGTGTAAGACCCATCTGGGATATGGCGTC-AGC-T
65 GACAGGCATCAGCCTCGAAATATGAAAGCTAGTGTAAGACCCATCTGGGACATGGCATCGA-CTT
**
47871536 TGATGTG-TGTC-AGTA
129 TGATGTGCTAACTAGTA
**
47871551 TAAGACC-TGTCTGGGACATGGCATCGACACCGGTAGATGAGAGCCAGTGTAAGACCTGTCTAGG
1 TAAGACCATGTCTGGGACATGGCATCGACACCGGTAGATGAGAGCCAGTGTAAGACAAGTCTAGG
* **
47871615 ACACGGCATCAGCCTCGATATATGAAAG-TCAGTGTAAGACCTGTCTGGGACATGGCATCGACTT
66 ACA-GGCATCAGCCTCGAAATATGAAAGCT-AGTGTAAGACCCATCTGGGACATGGCATCGACTT
*
47871679 TGATGTGCTAACTAGTG
129 TGATGTGCTAACTAGTA
47871696 TAAGACCATGTCTGGGACATGGC
1 TAAGACCATGTCTGGGACATGGC
47871719 GTCGGCATTT
Statistics
Matches: 140, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
138 17 0.12
139 8 0.06
140 2 0.01
141 31 0.22
142 46 0.33
143 9 0.06
144 2 0.01
145 10 0.07
146 15 0.11
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (145 bp):
TAAGACCATGTCTGGGACATGGCATCGACACCGGTAGATGAGAGCCAGTGTAAGACAAGTCTAGG
ACAGGCATCAGCCTCGAAATATGAAAGCTAGTGTAAGACCCATCTGGGACATGGCATCGACTTTG
ATGTGCTAACTAGTA
Found at i:47873139 original size:42 final size:42
Alignment explanation
Indices: 47873061--47873142 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
47873051 TGGTTATGTG
* * * *
47873061 TGATTTTGTGTAAGACCATATCTAGTATATGGCATCGATATT
1 TGATTTTGTGTAAGACCATATCTAGGACACGACATCGATATT
* *
47873103 TGATTTTGTGTAAGACCATGTCTGGGACACGACATCGATA
1 TGATTTTGTGTAAGACCATATCTAGGACACGACATCGATA
47873143 CGAGATATCG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (42 bp):
TGATTTTGTGTAAGACCATATCTAGGACACGACATCGATATT
Found at i:47882217 original size:42 final size:42
Alignment explanation
Indices: 47882138--47882217 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 42
47882128 GTTATGTGTG
* * ** *
47882138 ATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATTTA
1 ATTTCGTGTAAGACCATATCTAGGACATAACACCGATATTTA
* *
47882180 ATTTCGTGTAAGTCCATGTCTAGGACATAACACCGATA
1 ATTTCGTGTAAGACCATATCTAGGACATAACACCGATA
47882218 CAAGATATTG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 31 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (42 bp):
ATTTCGTGTAAGACCATATCTAGGACATAACACCGATATTTA
Found at i:47902674 original size:16 final size:17
Alignment explanation
Indices: 47902653--47902685 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
47902643 TAAAAAAAAA
*
47902653 TTAAATTATTTT-AAAT
1 TTAAATAATTTTGAAAT
47902669 TTAAATAATTTTGAAAT
1 TTAAATAATTTTGAAAT
47902686 CCAAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
TTAAATAATTTTGAAAT
Found at i:47903320 original size:32 final size:33
Alignment explanation
Indices: 47903251--47903320 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
47903241 CATATCACAT
47903251 AAAATAAAATAAATATGACTCAATCAATTTTAA
1 AAAATAAAATAAATATGACTCAATCAATTTTAA
47903284 AAAATAAAATAAATATGACTCAATCAA-TTTAA
1 AAAATAAAATAAATATGACTCAATCAATTTTAA
47903316 AAAAT
1 AAAAT
47903321 TAATACAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 10 0.27
33 27 0.73
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.29
Consensus pattern (33 bp):
AAAATAAAATAAATATGACTCAATCAATTTTAA
Found at i:47906296 original size:21 final size:21
Alignment explanation
Indices: 47906263--47906302 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
47906253 TACTAACATG
47906263 TATATATACTATATATTTTAT
1 TATATATACTATATATTTTAT
*
47906284 TATAT-TACGTATATGTTTT
1 TATATATAC-TATATATTTT
47906303 TATATACGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (21 bp):
TATATATACTATATATTTTAT
Found at i:47906308 original size:21 final size:18
Alignment explanation
Indices: 47906263--47906309 Score: 51
Period size: 21 Copynumber: 2.5 Consensus size: 18
47906253 TACTAACATG
47906263 TATATATACTATATATTT
1 TATATATACTATATATTT
*
47906281 TATTATATTACGTATATGTTT
1 TA-TATA-TAC-TATATATTT
47906302 T-TATATAC
1 TATATATAC
47906310 GCCATGCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 5 0.20
19 8 0.32
20 3 0.12
21 9 0.36
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (18 bp):
TATATATACTATATATTT
Found at i:47918371 original size:43 final size:44
Alignment explanation
Indices: 47918310--47918397 Score: 142
Period size: 43 Copynumber: 2.0 Consensus size: 44
47918300 AATTCACCAA
* *
47918310 ACCTTAACCCCCTAAGCAGTAGGGTAACAGG-TTAAATTTACAG
1 ACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAG
*
47918353 ACCTTAACCCCCTAAGCAGTAGGGTAATAGGCTAAAAATTACAG
1 ACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAG
47918397 A
1 A
47918398 TCTTGTCTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 30 0.73
44 11 0.27
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.22
Consensus pattern (44 bp):
ACCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAG
Found at i:47918597 original size:43 final size:43
Alignment explanation
Indices: 47918539--47918679 Score: 138
Period size: 43 Copynumber: 3.5 Consensus size: 43
47918529 AGGCTTCAAC
*
47918539 CCCCTAAGAAATAGGGTAACAAGCCAAATTTTCAAACCTTAAA
1 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAA
* ** * * *
47918582 CCCCTAAGCAGTAGGG--A-AA--C--A-GGTC-GAGCTTTAA
1 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAA
47918616 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAA
1 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAA
* *
47918659 CCCCTAAGCAGTAGGGAAACA
1 CCCCTAAGCAATAGGGTAACA
47918680 GGTCGCGCTT
Statistics
Matches: 74, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
34 21 0.28
35 2 0.03
36 2 0.03
37 2 0.03
38 1 0.01
39 1 0.01
40 2 0.03
41 2 0.03
42 2 0.03
43 39 0.53
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.18
Consensus pattern (43 bp):
CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAA
Found at i:47918623 original size:34 final size:34
Alignment explanation
Indices: 47918580--47918700 Score: 98
Period size: 34 Copynumber: 3.3 Consensus size: 34
47918570 TCAAACCTTA
47918580 AACCCCTAAGCAGTAGGGAAACAGGTCGAGCTTT
1 AACCCCTAAGCAGTAGGGAAACAGGTCGAGCTTT
* ** * * *
47918614 AACCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTA
1 AACCCCTAAGCAGTAGGG--A-AA--C--A-GGTC-GAGCTTT
*
47918657 AACCCCTAAGCAGTAGGGAAACAGGTCGCGCTTT
1 AACCCCTAAGCAGTAGGGAAACAGGTCGAGCTTT
47918691 AACCCCTAAG
1 AACCCCTAAG
47918701 TAGTGGGGTA
Statistics
Matches: 65, Mismatches: 13, Indels: 18
0.68 0.14 0.19
Matches are distributed among these distances:
34 30 0.46
35 2 0.03
36 2 0.03
37 2 0.03
38 1 0.02
39 1 0.02
40 2 0.03
41 2 0.03
42 2 0.03
43 21 0.32
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (34 bp):
AACCCCTAAGCAGTAGGGAAACAGGTCGAGCTTT
Found at i:47918724 original size:77 final size:77
Alignment explanation
Indices: 47918539--47918716 Score: 311
Period size: 77 Copynumber: 2.3 Consensus size: 77
47918529 AGGCTTCAAC
*
47918539 CCCCTAAGAAATAGGGTAACAAGCCAAATTTTCAAACCTTAAACCCCTAAGCAGTAGGGAAACAG
1 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAACCCCTAAGCAGTAGGGAAACAG
47918604 GTCGAGCTTTAA
66 GTCGAGCTTTAA
47918616 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAACCCCTAAGCAGTAGGGAAACAG
1 CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAACCCCTAAGCAGTAGGGAAACAG
*
47918681 GTCGCGCTTTAA
66 GTCGAGCTTTAA
* * *
47918693 CCCCTAAGTAGTGGGGTAACAAGC
1 CCCCTAAGCAATAGGGTAACAAGC
47918717 TGAATTTTGA
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 96 1.00
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.19
Consensus pattern (77 bp):
CCCCTAAGCAATAGGGTAACAAGCCAAATTTTCAAACCTTAAACCCCTAAGCAGTAGGGAAACAG
GTCGAGCTTTAA
Found at i:47927309 original size:40 final size:40
Alignment explanation
Indices: 47927254--47927516 Score: 320
Period size: 40 Copynumber: 6.5 Consensus size: 40
47927244 TATTCGGATG
47927254 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
*
47927294 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
* *
47927337 ACACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
47927377 ATATCCGGG-TGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCT-AAGTCCCGAAGGCATTTGTGC---TAGTTGCT
* *
47927420 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* * *
47927460 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
*
47927500 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
47927517 AAAGATACTT
Statistics
Matches: 194, Mismatches: 16, Indels: 27
0.82 0.07 0.11
Matches are distributed among these distances:
39 14 0.07
40 106 0.55
41 2 0.01
43 67 0.35
44 5 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:47927397 original size:83 final size:83
Alignment explanation
Indices: 47927258--47927495 Score: 415
Period size: 83 Copynumber: 2.9 Consensus size: 83
47927248 CGGATGATAT
*
47927258 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTGAAGTCCCGAAGGCATTTG
47927323 TGCGAGTAGTTGCTACAC
66 TGCGAGTAGTTGCTACAC
47927341 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTGAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTGAAGTCCCGAAGGCATTTG
*
47927406 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTACAC
* * *
47927424 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATTCGGGCT-AAGACCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGG-TGAAGTCCCGAAGGCATTT
47927488 GTGCGAGT
65 GTGCGAGT
47927496 TGCTATATCC
Statistics
Matches: 149, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
83 148 0.99
84 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (83 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGTGAAGTCCCGAAGGCATTTG
TGCGAGTAGTTGCTACAC
Found at i:47927473 original size:123 final size:121
Alignment explanation
Indices: 47927254--47927516 Score: 322
Period size: 123 Copynumber: 2.1 Consensus size: 121
47927244 TATTCGGATG
*
47927254 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATACCCGGGCGAAGTCCCGAAGGCA
* * *
47927319 TTTGTGCGAGTAGTTGCTACACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
66 TTTATGC--GTAGTTGCTACACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
*
47927377 ATATCCGGG-TGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CTATACCCGGGCTAAGTCCCGA
1 ATATCCGGGCT-AAGTCCCGAAGGCATTTGTGC---TAG-TGACTATACCCGGGCGAAGTCCCGA
* **
47927440 AGGCATTTATGC-TAG-TGACTATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
61 AGGCATTTATGCGTAGTTG-CTACACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
*
47927500 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
47927517 AAAGATACTT
Statistics
Matches: 123, Mismatches: 9, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
122 11 0.09
123 74 0.60
124 2 0.02
126 34 0.28
127 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (121 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATACCCGGGCGAAGTCCCGAAGGCA
TTTATGCGTAGTTGCTACACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
Found at i:47930019 original size:48 final size:48
Alignment explanation
Indices: 47929948--47930181 Score: 330
Period size: 48 Copynumber: 4.9 Consensus size: 48
47929938 CGTGACACCG
* *
47929948 TGATAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
1 TGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
*
47929996 TGATATATGTGCCAGTGTAAGACCATCTCTGGGACATGGCATCGGCGA
1 TGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
* *
47930044 TGATATATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCGGCGA
1 TGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
* * *
47930092 TGATATGTGTGCCAGTGTAAAACCATGTTTGGGACATGGCATCGGCGA
1 TGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
* *
47930140 TGAT-T-TGTGGATTCA-TGTAAGACCATGTCAGGGACATGGCAT
1 TGATATATGT-G--CCAGTGTAAGACCATGTCTGGGACATGGCAT
47930182 TGGTACTTTA
Statistics
Matches: 168, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
46 3 0.02
47 2 0.01
48 161 0.96
49 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
TGATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGA
Found at i:47936987 original size:15 final size:15
Alignment explanation
Indices: 47936967--47937005 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
47936957 CACACAAGTG
47936967 GCCACACGGGTGTGT
1 GCCACACGGGTGTGT
47936982 GCCACACGGGTGTGT
1 GCCACACGGGTGTGT
47936997 GCCACACGG
1 GCCACACGG
47937006 TCGGTTCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (15 bp):
GCCACACGGGTGTGT
Found at i:47937398 original size:20 final size:22
Alignment explanation
Indices: 47937355--47937400 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
47937345 GTCCCTAGGT
* *
47937355 CACACAGGTGTGTGCCTCCTTC
1 CACACAGGCGTATGCCTCCTTC
47937377 CACACAGGCGTATGCC-CC-TC
1 CACACAGGCGTATGCCTCCTTC
47937397 CACA
1 CACA
47937401 TGGGCGTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 6 0.27
21 2 0.09
22 14 0.64
ACGTcount: A:0.20, C:0.41, G:0.20, T:0.20
Consensus pattern (22 bp):
CACACAGGCGTATGCCTCCTTC
Found at i:47946964 original size:43 final size:43
Alignment explanation
Indices: 47946936--47947050 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
47946926 TATCTCATAT
* *
47946936 CGATGGCAATGTCCTAGACATGCTCTTACACGAAATCATATAA
1 CGATGCCAATGTCCTAAACATGCTCTTACACGAAATCATATAA
* * *
47946979 CGATGCCAATGTCCTAAACATGGTCTTACACGTAATCACA-ATA
1 CGATGCCAATGTCCTAAACATGCTCTTACACGAAATCATATA-A
* * *
47947022 CAATTCCAATGTCCTAGACAT-CATCTTAC
1 CGATGCCAATGTCCTAAACATGC-TCTTAC
47947051 TGTAATCACA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
42 1 0.02
43 60 0.98
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (43 bp):
CGATGCCAATGTCCTAAACATGCTCTTACACGAAATCATATAA
Found at i:47950176 original size:48 final size:48
Alignment explanation
Indices: 47950124--47950307 Score: 251
Period size: 48 Copynumber: 3.8 Consensus size: 48
47950114 ATGTCAATGT
* * *
47950124 CGATGCCATGTCCCAGACATGGTCTTAGACTAGCACACATATCAACAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * *
47950172 CGATGCCATGTCCCACACATGGTCGTACACTGGCTCACATATCAACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* * * * *
47950220 CGATTCCATGTCCTAGACATCGACTTACACTGGCTCACATATCAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
* *
47950268 TGATGGCATGTCCCAGACATGGTCTTACACTGGCTCACAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
47950308 TAACCACGGT
Statistics
Matches: 116, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 116 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACAC
Found at i:47951853 original size:26 final size:26
Alignment explanation
Indices: 47951824--47951883 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
47951814 TCCCTTTGAA
* * *
47951824 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
47951850 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
47951878 CCATTC
1 TCATTC
47951884 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:47951869 original size:28 final size:28
Alignment explanation
Indices: 47951838--47951909 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
47951828 TCGATATTTT
*
47951838 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
47951866 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
47951894 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
47951910 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:47955039 original size:141 final size:141
Alignment explanation
Indices: 47954785--47955092 Score: 474
Period size: 141 Copynumber: 2.2 Consensus size: 141
47954775 TTTCACACGC
* * *
47954785 AATTTCTTTATGAAATTTTCACAAAAGAATGAAAACATATCATAGGCCTTATAATAATCATAAAA
1 AATTTCTTCACGAAATTTTCACACAAGAATGAAAACATATCATAGGCCTTATAATAATCATAAAA
* * * * *
47954850 TAATTATTTCTATTTCAAATTTGTGGTCTCGAAACCACTGTTCTGACTAGGCCCTAATTCGGGAT
66 TAATTATTTATATTTCAAACTTATGGTCTCAAAACCACTATTCTGACTAGGCCCTAATTCGGGAT
*
47954915 GTTACAGGTAA
131 GTTACAAGTAA
* *
47954926 AATTTCTTCACGAAATTTTCACACAAGCAT-ACAAACATATCTTAGGCCTTATAATAATCATAAA
1 AATTTCTTCACGAAATTTTCACACAAGAATGA-AAACATATCATAGGCCTTATAATAATCATAAA
*
47954990 CTAATTATTTATATTTCAAACTTATGGTCTCAAAACCACTATTCTGACTAGGCCCTAATTCGGGA
65 ATAATTATTTATATTTCAAACTTATGGTCTCAAAACCACTATTCTGACTAGGCCCTAATTCGGGA
*
47955055 TGTTATAAGTAA
130 TGTTACAAGTAA
*
47955067 AATTTCTTCACGAAATTTTTACACAA
1 AATTTCTTCACGAAATTTTCACACAA
47955093 CCCTAATATC
Statistics
Matches: 152, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
140 1 0.01
141 151 0.99
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (141 bp):
AATTTCTTCACGAAATTTTCACACAAGAATGAAAACATATCATAGGCCTTATAATAATCATAAAA
TAATTATTTATATTTCAAACTTATGGTCTCAAAACCACTATTCTGACTAGGCCCTAATTCGGGAT
GTTACAAGTAA
Found at i:47958865 original size:21 final size:22
Alignment explanation
Indices: 47958841--47958888 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
47958831 AAAAAACAAG
* *
47958841 AAAATAA-CAATAAAATAGTAA
1 AAAATAAGCAAGAAAACAGTAA
47958862 AAAA-AAGCAAGAAAACAGTAA
1 AAAATAAGCAAGAAAACAGTAA
47958883 AAAATA
1 AAAATA
47958889 GTTTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 20 0.87
22 1 0.04
ACGTcount: A:0.73, C:0.06, G:0.08, T:0.12
Consensus pattern (22 bp):
AAAATAAGCAAGAAAACAGTAA
Found at i:47959002 original size:31 final size:30
Alignment explanation
Indices: 47958967--47959025 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
47958957 TTTCTAAATG
* **
47958967 AGACTTATTTTTTTGTCCAAATCTATTTTTC
1 AGACTTATATTTTTACCCAAATC-ATTTTTC
47958998 AGACTTATATTTTTACCCAAATCATTTT
1 AGACTTATATTTTTACCCAAATCATTTT
47959026 ACTTTTCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (30 bp):
AGACTTATATTTTTACCCAAATCATTTTTC
Found at i:47966056 original size:20 final size:20
Alignment explanation
Indices: 47966031--47966068 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
47966021 ACAATGAAGG
47966031 AATAAAATATACTA-AAATGA
1 AATAAAATA-ACTACAAATGA
47966051 AATAAAATAACTACAAAT
1 AATAAAATAACTACAAAT
47966069 AAACTCTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.66, C:0.08, G:0.03, T:0.24
Consensus pattern (20 bp):
AATAAAATAACTACAAATGA
Found at i:47979125 original size:40 final size:40
Alignment explanation
Indices: 47979070--47979293 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
47979060 TATTCGGATG
47979070 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
47979110 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
47979153 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
47979193 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
47979233 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
47979273 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
47979294 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:47979213 original size:83 final size:80
Alignment explanation
Indices: 47979074--47979293 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
47979064 CGGATGATAT
* **
47979074 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
47979139 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
47979157 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
47979222 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
47979237 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
47979294 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:47987326 original size:40 final size:40
Alignment explanation
Indices: 47987271--47987494 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
47987261 TATTCGGATG
47987271 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
47987311 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
47987354 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
47987394 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
47987434 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
47987474 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
47987495 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:47987414 original size:83 final size:80
Alignment explanation
Indices: 47987275--47987494 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
47987265 CGGATGATAT
* **
47987275 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
47987340 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
47987358 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
47987423 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
47987438 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
47987495 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:47989760 original size:17 final size:17
Alignment explanation
Indices: 47989738--47989771 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
47989728 GTAATGATTT
*
47989738 TAAAAATTAAAGTTTGA
1 TAAAAATCAAAGTTTGA
47989755 TAAAAATCAAAGTTTGA
1 TAAAAATCAAAGTTTGA
47989772 AATTATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.32
Consensus pattern (17 bp):
TAAAAATCAAAGTTTGA
Found at i:47992232 original size:108 final size:108
Alignment explanation
Indices: 47992043--47992260 Score: 418
Period size: 108 Copynumber: 2.0 Consensus size: 108
47992033 TGGGATGAGC
47992043 ATAGGCAGCTTGTTGTTGCTGAAGATGCGGTATGGAACTCATAAATAAATGTAAGAATTATTTCA
1 ATAGGCAGCTTGTTGTTGCTGAAGATGCGGTATGGAACTCATAAATAAATGTAAGAATTATTTCA
47992108 AGTCTTTATTATCTTAATTTGACCAAACTTATATCTAATATGA
66 AGTCTTTATTATCTTAATTTGACCAAACTTATATCTAATATGA
*
47992151 ATAGGCAGCTTGTTGTTGCTGAAGATGCGGTATGGAACTCATATATAAATGTAAGAATTATTTCA
1 ATAGGCAGCTTGTTGTTGCTGAAGATGCGGTATGGAACTCATAAATAAATGTAAGAATTATTTCA
*
47992216 AGTCTTTATTATCTTAATTTGTCCAAACTTATATCTAATATGA
66 AGTCTTTATTATCTTAATTTGACCAAACTTATATCTAATATGA
47992259 AT
1 AT
47992261 TCTTCTTTTT
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (108 bp):
ATAGGCAGCTTGTTGTTGCTGAAGATGCGGTATGGAACTCATAAATAAATGTAAGAATTATTTCA
AGTCTTTATTATCTTAATTTGACCAAACTTATATCTAATATGA
Found at i:47993359 original size:57 final size:58
Alignment explanation
Indices: 47993260--47993396 Score: 177
Period size: 58 Copynumber: 2.4 Consensus size: 58
47993250 TTAATTCATA
* * * *
47993260 TAATAATAATTATATTAAGAATTTTATTAAATTATATATTA-TTTTATTAAATTATATT
1 TAATAATAATCATATTAA-AATATGATTAAATTATATATTATTTTTAATAAATTATATT
* * * *
47993318 TAGTAATAATCATGTTAAAATATGATTAAATTATTTATTATTTTTAATAAATTATTTT
1 TAATAATAATCATATTAAAATATGATTAAATTATATATTATTTTTAATAAATTATATT
*
47993376 TAATAATAATCTTATTAAAAT
1 TAATAATAATCATATTAAAAT
47993397 TTAATAATAA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
57 19 0.28
58 48 0.72
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (58 bp):
TAATAATAATCATATTAAAATATGATTAAATTATATATTATTTTTAATAAATTATATT
Found at i:47993373 original size:14 final size:14
Alignment explanation
Indices: 47993354--47993381 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
47993344 TAAATTATTT
47993354 ATTATTTTTAATAA
1 ATTATTTTTAATAA
47993368 ATTATTTTTAATAA
1 ATTATTTTTAATAA
47993382 TAATCTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTATTTTTAATAA
Found at i:47993548 original size:12 final size:12
Alignment explanation
Indices: 47993529--47993595 Score: 75
Period size: 12 Copynumber: 5.6 Consensus size: 12
47993519 TAATAATAAT
47993529 TTTA-TATTAAA
1 TTTATTATTAAA
47993540 TTTATTATTAAA
1 TTTATTATTAAA
* *
47993552 TATTATTAATAAT
1 T-TTATTATTAAA
47993565 TTTA-TATTAAA
1 TTTATTATTAAA
*
47993576 ATTATTATTAAA
1 TTTATTATTAAA
47993588 TATTATTA
1 T-TTATTA
47993596 ATAATTATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
11 12 0.26
12 18 0.39
13 16 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TTTATTATTAAA
Found at i:47993557 original size:10 final size:10
Alignment explanation
Indices: 47993542--47993596 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 10
47993532 ATATTAAATT
47993542 TATTATTAAA
1 TATTATTAAA
47993552 TATTATT-AA
1 TATTATTAAA
47993561 TAATT-TT--A
1 T-ATTATTAAA
47993569 TATTA--AAA
1 TATTATTAAA
47993577 TTATTATTAAA
1 -TATTATTAAA
47993588 TATTATTAA
1 TATTATTAA
47993597 TAATTATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
7 3 0.08
8 3 0.08
9 10 0.26
10 19 0.50
11 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TATTATTAAA
Found at i:47993564 original size:36 final size:36
Alignment explanation
Indices: 47993522--47993631 Score: 154
Period size: 36 Copynumber: 3.1 Consensus size: 36
47993512 ATGTTCTTAA
*
47993522 TAATAATTTTATATTAAATTTATTATTAAATATTAT
1 TAATAATTTTATATTAAAATTATTATTAAATATTAT
47993558 TAATAATTTTATATTAAAATTATTATTAAATATTAT
1 TAATAATTTTATATTAAAATTATTATTAAATATTAT
*
47993594 TAATAA--TTATATTAATAA-TGTTATTAAAATATATAT
1 TAATAATTTTATATTAA-AATTATTATT-AAATAT-TAT
47993630 TA
1 TA
47993632 TTTTATTAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
34 15 0.22
35 8 0.12
36 46 0.67
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (36 bp):
TAATAATTTTATATTAAAATTATTATTAAATATTAT
Found at i:47993565 original size:24 final size:25
Alignment explanation
Indices: 47993541--47993631 Score: 84
Period size: 24 Copynumber: 3.8 Consensus size: 25
47993531 TATATTAAAT
*
47993541 TTATTATTAAATATTATTAATAATT
1 TTATTATTAAATATTATTAATAATA
*
47993566 TTA-TATTAAA-ATTATTATTAAATA
1 TTATTATTAAATATTATTAAT-AATA
* * *
47993590 TTATTAATAATTA-TATTAATAATG
1 TTATTATTAAATATTATTAATAATA
47993614 TTATTA--AAATATATATTA
1 TTATTATTAAATAT-TATTA
47993632 TTTTATTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
22 4 0.07
23 8 0.15
24 27 0.50
25 14 0.26
26 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (25 bp):
TTATTATTAAATATTATTAATAATA
Found at i:47993606 original size:12 final size:11
Alignment explanation
Indices: 47993530--47993631 Score: 66
Period size: 12 Copynumber: 8.7 Consensus size: 11
47993520 AATAATAATT
*
47993530 TTATATTAAAT
1 TTATATTAAAA
47993541 TTATTATTAAATA
1 TTA-TATTAAA-A
* **
47993554 TTATTAATAATT
1 TTA-TATTAAAA
47993566 TTATATTAAAA
1 TTATATTAAAA
47993577 TTATTATT-AAA
1 TTA-TATTAAAA
47993588 -TATTATTAATAA
1 TTA-TATTAA-AA
47993600 TTATATTAATAA
1 TTATATTAA-AA
47993612 TGT-TATTAAAA
1 T-TATATTAAAA
47993623 TATATATTA
1 T-TATATTA
47993632 TTTTATTAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
10 7 0.09
11 19 0.25
12 37 0.49
13 12 0.16
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (11 bp):
TTATATTAAAA
Found at i:47993886 original size:44 final size:46
Alignment explanation
Indices: 47993816--47993905 Score: 121
Period size: 44 Copynumber: 2.0 Consensus size: 46
47993806 ATTACAACAT
47993816 CATTCCATTCAACCAAACACAAGAATT-CT-ATTACAACTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAACTCTATTC
*** * *
47993860 CATTCCATTCAACCAAACAGTTGAATTATTGATTACAGCTCTATTC
1 CATTCCATTCAACCAAACACAAGAATTACTGATTACAACTCTATTC
47993906 AATTACAACC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 24 0.62
45 1 0.03
46 14 0.36
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.32
Consensus pattern (46 bp):
CATTCCATTCAACCAAACACAAGAATTACTGATTACAACTCTATTC
Found at i:47993912 original size:16 final size:16
Alignment explanation
Indices: 47993891--47993929 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
47993881 TGAATTATTG
*
47993891 ATTACAGCTCTATTCA
1 ATTACAGCCCTATTCA
* *
47993907 ATTACAACCCTATTCT
1 ATTACAGCCCTATTCA
47993923 ATTACAG
1 ATTACAG
47993930 TGAACCAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCCCTATTCA
Found at i:48007150 original size:20 final size:21
Alignment explanation
Indices: 48007125--48007164 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
48007115 CACCTACAAC
* *
48007125 AAAAAA-TATCAATACTTTTT
1 AAAAAAGTACCAATAATTTTT
48007145 AAAAAAGTACCAATAATTTT
1 AAAAAAGTACCAATAATTTT
48007165 AGCATTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.35
Consensus pattern (21 bp):
AAAAAAGTACCAATAATTTTT
Found at i:48007860 original size:22 final size:22
Alignment explanation
Indices: 48007832--48007874 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
48007822 TAAGTGTATA
48007832 ACTTTAATACTTTGTAAACTAC
1 ACTTTAATACTTTGTAAACTAC
48007854 ACTTTAATACTTTGTAAACTA
1 ACTTTAATACTTTGTAAACTA
48007875 ATATTTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (22 bp):
ACTTTAATACTTTGTAAACTAC
Found at i:48013216 original size:30 final size:29
Alignment explanation
Indices: 48013177--48013243 Score: 116
Period size: 30 Copynumber: 2.3 Consensus size: 29
48013167 TTTAGCAAAA
48013177 AAACTCTCAAATTTCTCCCTAAATTTCTC
1 AAACTCTCAAATTTCTCCCTAAATTTCTC
*
48013206 AAAGCTCTCAAATTTCTCCTTAAATTTCTC
1 AAA-CTCTCAAATTTCTCCCTAAATTTCTC
48013236 AAACTCTC
1 AAACTCTC
48013244 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 8 0.22
30 28 0.78
ACGTcount: A:0.31, C:0.30, G:0.01, T:0.37
Consensus pattern (29 bp):
AAACTCTCAAATTTCTCCCTAAATTTCTC
Found at i:48015299 original size:21 final size:21
Alignment explanation
Indices: 48015273--48015313 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
48015263 CCCACAATCA
48015273 GAGCAACCACAACACCCGCTG
1 GAGCAACCACAACACCCGCTG
* *
48015294 GAGCAAGCACAACTCCCGCT
1 GAGCAACCACAACACCCGCT
48015314 AGAAGCTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.41, G:0.20, T:0.07
Consensus pattern (21 bp):
GAGCAACCACAACACCCGCTG
Found at i:48021737 original size:10 final size:11
Alignment explanation
Indices: 48021718--48021747 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
48021708 TTTTCCTAAG
48021718 ATGTGAATTGA
1 ATGTGAATTGA
48021729 ATG-GAATTGA
1 ATGTGAATTGA
48021739 ATGTGAATT
1 ATGTGAATT
48021748 TTATTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (11 bp):
ATGTGAATTGA
Found at i:48025451 original size:37 final size:37
Alignment explanation
Indices: 48025401--48025476 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
48025391 ATGATCAATG
*
48025401 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
48025438 TTGTTGT-ATTTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGA-TTAGCCATGAGATGTGGCTTATAATGAT
48025475 TT
1 TT
48025477 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 3 0.09
37 29 0.83
ACGTcount: A:0.25, C:0.08, G:0.22, T:0.45
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:48027427 original size:15 final size:15
Alignment explanation
Indices: 48027382--48027444 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 15
48027372 TATGATATGG
*
48027382 TATCTTGGATTTCTG
1 TATCTTGGATTTCTT
* *
48027397 TACCTTGGATATCTT
1 TATCTTGGATTTCTT
*
48027412 TATCTTGGATTCCTT
1 TATCTTGGATTTCTT
* *
48027427 TGTCATGGATTTCTT
1 TATCTTGGATTTCTT
48027442 TAT
1 TAT
48027445 TCTGGTTTTC
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:48031070 original size:17 final size:17
Alignment explanation
Indices: 48031048--48031083 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
48031038 TGTATCATGA
48031048 GATATTTGAATTCTTGT
1 GATATTTGAATTCTTGT
48031065 GATATTTGAATTCTTGT
1 GATATTTGAATTCTTGT
48031082 GA
1 GA
48031084 GACAGAGTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (17 bp):
GATATTTGAATTCTTGT
Found at i:48031788 original size:37 final size:37
Alignment explanation
Indices: 48031737--48031812 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
48031727 ATGATCGATG
*
48031737 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
48031774 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
48031811 TT
1 TT
48031813 TGGCTTGTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:48044047 original size:25 final size:26
Alignment explanation
Indices: 48044019--48044068 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
48044009 AATTCATGCA
*
48044019 TAGATTAAAGC-ATTTAAAATACGTT
1 TAGAGTAAAGCTATTTAAAATACGTT
*
48044044 TAGAGTAAAGCTTATTTAACATACG
1 TAGAGTAAAGC-TATTTAAAATACG
48044069 GATTTACCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (26 bp):
TAGAGTAAAGCTATTTAAAATACGTT
Found at i:48048216 original size:17 final size:17
Alignment explanation
Indices: 48048194--48048238 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
48048184 GATTGATTTT
48048194 TGATATGCATGTTTAAA
1 TGATATGCATGTTTAAA
48048211 TGATATGCATGTTTAAA
1 TGATATGCATGTTTAAA
* *
48048228 TAACATGCATG
1 TGATATGCATG
48048239 CAAGTTATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (17 bp):
TGATATGCATGTTTAAA
Found at i:48050191 original size:45 final size:45
Alignment explanation
Indices: 48050127--48050486 Score: 512
Period size: 45 Copynumber: 8.1 Consensus size: 45
48050117 AAAGAACTGA
48050127 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
*
48050172 TGAAATGTTATTCGCGCCTTTGAGCCTAGCAGGCTATAATGCCGG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
* *
48050217 TGAAATGTTATTCTGGCCTTTGAGCCTAGCAGGCTATAATGCTGG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
48050262 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
* *
48050307 TGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
* * * *
48050352 TGAGATATTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCAG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
* ** * *
48050397 TGAGATACTATTCGGG-CTTTCGAGCCTAACAGGCTATAATGTCGG
1 TGAAATGTTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGG
* * * * *
48050442 TGGAATGATA-TCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCAG
1 TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
48050484 TGA
1 TGA
48050487 TTTGAGAAAA
Statistics
Matches: 288, Mismatches: 25, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
42 8 0.03
43 13 0.05
44 10 0.03
45 257 0.89
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
TGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
Found at i:48052158 original size:46 final size:46
Alignment explanation
Indices: 48052102--48052418 Score: 225
Period size: 46 Copynumber: 6.7 Consensus size: 46
48052092 TCACTTGTGT
* * * *
48052102 GAGCTAGTGTAAGACATGCCTGGGACATTCATCGGCCACAATATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGA
* * *
48052148 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-CATCGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CAAGATGA
* * * ** * *
48052196 GTGCTAGTGTAAGACATGTCTGAGACATGCATCGGCTTCGAGACTTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGA-TGA
* **
48052243 G-GCCAGTGTAAGACATGTCTTGGACATGCATCGGCTGCAAGAT--
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGA
* * * *
48052286 GTGTCAGTGTAAGACCATGTCTGGGATATGGCATCGG-CAC-GGTTATTGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAAG--A-TGA
* * *
48052335 GAGCTAGTGTAAGAACATGTCTGAGACATGGCATTGGCCTTA-AAGATGA
1 GAGCCAGTGTAAG-ACATGTCTGGGACAT-GCATCGGCC--ACAAGATGA
*
48052384 TAGCCAGTGTAAGACCATGTCTGGGACATTGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACA-TGCATC
48052419 AGCACCTTAC
Statistics
Matches: 214, Mismatches: 37, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.00
44 12 0.06
45 14 0.07
46 69 0.32
47 29 0.14
48 24 0.11
49 59 0.28
50 4 0.02
52 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGA
Found at i:48057955 original size:23 final size:23
Alignment explanation
Indices: 48057929--48057974 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
48057919 CGAAGTAAGC
48057929 TATATAGCTTAGTAAGCTCGTAT
1 TATATAGCTTAGTAAGCTCGTAT
48057952 TATATAGCTTAGTAAGCTCGTAT
1 TATATAGCTTAGTAAGCTCGTAT
48057975 GAAAGAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.39
Consensus pattern (23 bp):
TATATAGCTTAGTAAGCTCGTAT
Found at i:48063328 original size:53 final size:53
Alignment explanation
Indices: 48063145--48063351 Score: 216
Period size: 53 Copynumber: 3.8 Consensus size: 53
48063135 ATTAGGGTTT
* * * *
48063145 AAGGATACCAAGTAAGACCATGCCAAGACATGGCACTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
48063199 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGGTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
48063254 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
48063307 AAGGATACCACGTAAGACCATGTCAAGACATGACAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
48063352 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 30, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 44 0.36
54 38 0.31
55 39 0.32
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:48069337 original size:27 final size:27
Alignment explanation
Indices: 48069307--48069484 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48069297 ATATTGATTC
* * * *
48069307 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48069334 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48069361 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48069389 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48069416 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48069443 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48069470 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48069485 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48069446 original size:82 final size:81
Alignment explanation
Indices: 48069328--48069483 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48069318 TGCTATATAA
* *
48069328 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48069393 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
48069410 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48069474 CACTTAGTGC
65 CACTTAGTGC
48069484 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48077390 original size:27 final size:27
Alignment explanation
Indices: 48077360--48077537 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48077350 ATATTGAGTC
* * * *
48077360 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48077387 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48077414 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48077442 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48077469 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48077496 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48077523 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48077538 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48077499 original size:82 final size:81
Alignment explanation
Indices: 48077381--48077536 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48077371 TGCTATATAA
* *
48077381 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48077446 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
48077463 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48077527 CACTTAGTGC
65 CACTTAGTGC
48077537 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48082110 original size:53 final size:53
Alignment explanation
Indices: 48082012--48082116 Score: 120
Period size: 53 Copynumber: 2.0 Consensus size: 53
48082002 ATAAACTACG
* ** * * ** *
48082012 ATAAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACATAAGACCATGCAAAGACATGAAAATGGTAAGTTC
* *
48082065 ATAAGGCAAGGATACCACATAAGACCATGTAAAGACATGAAAATGGTAAGTT
1 ATAAGGCAAAGATACCACATAAGACCATGCAAAGACATGAAAATGGTAAGTT
48082117 TAAAAAGGAA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
53 42 1.00
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACATAAGACCATGCAAAGACATGAAAATGGTAAGTTC
Found at i:48085553 original size:23 final size:23
Alignment explanation
Indices: 48085527--48085593 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
48085517 ATAAATGTAG
48085527 TTTTGAATTAATTTAAAGGTTAA
1 TTTTGAATTAATTTAAAGGTTAA
* * *
48085550 TTTTG--GT-ATTT---TG-TAG
1 TTTTGAATTAATTTAAAGGTTAA
48085566 TTTTGAATTAATTTAAAGGTTAA
1 TTTTGAATTAATTTAAAGGTTAA
48085589 TTTTG
1 TTTTG
48085594 GTATTTGAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 14
0.61 0.12 0.27
Matches are distributed among these distances:
16 7 0.23
17 1 0.03
18 1 0.03
19 4 0.13
20 4 0.13
21 1 0.03
22 1 0.03
23 12 0.39
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (23 bp):
TTTTGAATTAATTTAAAGGTTAA
Found at i:48085565 original size:39 final size:39
Alignment explanation
Indices: 48085522--48085599 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
48085512 ATGTCATAAA
48085522 TGTAGTTTTGAATTAATTTAAAGGTTAATTTTGGTATTT
1 TGTAGTTTTGAATTAATTTAAAGGTTAATTTTGGTATTT
48085561 TGTAGTTTTGAATTAATTTAAAGGTTAATTTTGGTATTT
1 TGTAGTTTTGAATTAATTTAAAGGTTAATTTTGGTATTT
48085600 GAGTATTTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.00, G:0.18, T:0.54
Consensus pattern (39 bp):
TGTAGTTTTGAATTAATTTAAAGGTTAATTTTGGTATTT
Found at i:48086408 original size:40 final size:40
Alignment explanation
Indices: 48086364--48086463 Score: 137
Period size: 40 Copynumber: 2.5 Consensus size: 40
48086354 ATATCATATA
* * **
48086364 TATATATGACACTTAGTGTGCGATTCAAGAAAGCTTCGGT
1 TATATATGGCACTTAGTGTGCAATTCAAGAAAGCTTCGAC
* * *
48086404 TATATACGGCACTTATTGTGCAATTCAAGAAAGTTTCGAC
1 TATATATGGCACTTAGTGTGCAATTCAAGAAAGCTTCGAC
48086444 TATATATGGCACTTAGTGTG
1 TATATATGGCACTTAGTGTG
48086464 TAACACCCCT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGCAATTCAAGAAAGCTTCGAC
Found at i:48090201 original size:48 final size:48
Alignment explanation
Indices: 48090143--48090275 Score: 194
Period size: 48 Copynumber: 2.8 Consensus size: 48
48090133 CTCTTGTCAG
* *
48090143 TGCCAATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATAAA
** * * *
48090191 TGCCGGTGCCATGTCCCAGACATGGTCTTACAATGGCACACATGTAAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATAAA
*
48090239 TGCCAATGCCATGTCTCAGACATGGTCTTACACTAGC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGC
48090276 TCTCATTAAT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATAAA
Found at i:48091943 original size:42 final size:42
Alignment explanation
Indices: 48091832--48091943 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
48091822 TACCATACCA
* * * *
48091832 ATGCCATATCCTAGATATGGTCTTAAATGAAATCTCGTATCG
1 ATGCCATATCCCAGATATGGCCTTACATGAAATCTCATATCG
* * *
48091874 ATGCCAATAGCCCAGTTAT-GCTCTTACATGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGC-CTTACATGAAATCTCATATCG
48091917 ATGCCATATCCCAGATATGGCCTTACA
1 ATGCCATATCCCAGATATGGCCTTACA
48091944 CATAATCTCG
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 23 0.40
43 35 0.60
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGCCTTACATGAAATCTCATATCG
Found at i:48094653 original size:21 final size:21
Alignment explanation
Indices: 48094626--48094686 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
48094616 TATAATGAGT
48094626 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
48094647 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
48094668 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
48094687 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:48094685 original size:10 final size:10
Alignment explanation
Indices: 48094626--48094686 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
48094616 TATAATGAGT
48094626 ATATCATAG-C
1 ATATCAT-GTC
48094636 ATATCATGTGC
1 ATATCATGT-C
* **
48094647 ATCTCATAAC
1 ATATCATGTC
48094657 ATATCATGTGC
1 ATATCATGT-C
48094668 ATATCATGTC
1 ATATCATGTC
48094678 ATATCATGT
1 ATATCATGT
48094687 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:48100234 original size:46 final size:46
Alignment explanation
Indices: 48100092--48100234 Score: 118
Period size: 46 Copynumber: 3.1 Consensus size: 46
48100082 CCCGCCCATA
* *
48100092 AGTGAACTCGGACTCAACTCAACGAGCTCGG-TGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
48100140 CA---AACTCGGACTCAAGTCAACGAGTTCGGACATTCGCATCCAT--A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
48100184 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
48100230 AGTGA
1 AGTGA
48100235 CATGTCACTT
Statistics
Matches: 73, Mismatches: 13, Indels: 19
0.70 0.12 0.18
Matches are distributed among these distances:
43 1 0.01
44 8 0.11
46 56 0.77
47 4 0.05
49 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:48102625 original size:15 final size:15
Alignment explanation
Indices: 48102603--48102679 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
48102593 AAGAAAACGA
48102603 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
48102618 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
48102631 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
48102646 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
48102662 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
48102677 ATA
1 ATA
48102680 CGATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.04
14 10 0.19
15 39 0.75
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:48102635 original size:29 final size:30
Alignment explanation
Indices: 48102601--48102679 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 30
48102591 ACAAGAAAAC
*
48102601 GAATAAAGAAATCCAAGATAGAGA-AACCA
1 GAATAAAGAAATCCAAGATAAAGAGAACCA
*
48102630 GAATAAAGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAGAACCA
* *
48102660 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
48102680 CGATACTATG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
28 2 0.05
29 20 0.47
30 19 0.44
31 2 0.05
ACGTcount: A:0.57, C:0.14, G:0.18, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAGAACCA
Found at i:48105767 original size:46 final size:46
Alignment explanation
Indices: 48105601--48105776 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
48105591 TGTAACTCGC
* * *
48105601 CCATAAGTGAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
48105647 CAATAAGTGAACTCGAACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
48105693 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
48105740 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
48105777 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:48105768 original size:93 final size:93
Alignment explanation
Indices: 48105609--48105780 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
48105599 GCCCATAAGT
* * *
48105609 GAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCATCAATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGAACTCAACTCAA
48105674 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
48105702 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGAACTCAACTCAA
*
48105767 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
48105781 CAAACATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCAATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:48105795 original size:46 final size:46
Alignment explanation
Indices: 48105652--48105795 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
48105642 CGCATCAATA
* * *
48105652 AGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
48105701 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
48105745 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
48105791 AGTGA
1 AGTGA
48105796 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
44 8 0.11
46 33 0.44
47 30 0.40
49 4 0.05
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:48109380 original size:29 final size:27
Alignment explanation
Indices: 48109362--48109431 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
48109352 ATATTAAGTC
48109362 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
48109389 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
48109417 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
48109432 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:48109425 original size:28 final size:28
Alignment explanation
Indices: 48109362--48109459 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
48109352 ATATTAAGTC
*
48109362 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
48109389 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
48109417 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
48109446 CGCACACTTAGTGC
1 CGCACACTTAGTGC
48109460 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:48117597 original size:28 final size:28
Alignment explanation
Indices: 48117534--48117631 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
48117524 ATATTAAGTC
*
48117534 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
48117561 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
48117589 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
48117618 CGCACACTTAGTGC
1 CGCACACTTAGTGC
48117632 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:48122578 original size:21 final size:21
Alignment explanation
Indices: 48122551--48122612 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
48122541 TATAATGAGT
48122551 ATATCATAGCATATCATGTAC
1 ATATCATAGCATATCATGTAC
* * *
48122572 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTAC
48122593 ATATCAT-GTCATATCATGTA
1 ATATCATAG-CATATCATGTA
48122613 TAACAATATC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATATCATAGCATATCATGTAC
Found at i:48122611 original size:10 final size:10
Alignment explanation
Indices: 48122551--48122611 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
48122541 TATAATGAGT
48122551 ATATCATAG-C
1 ATATCAT-GTC
48122561 ATATCATGTAC
1 ATATCATGT-C
* **
48122572 ATCTCATAAC
1 ATATCATGTC
48122582 ATATCATGTGC
1 ATATCATGT-C
48122593 ATATCATGTC
1 ATATCATGTC
48122603 ATATCATGT
1 ATATCATGT
48122612 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:48125296 original size:12 final size:12
Alignment explanation
Indices: 48125279--48125304 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
48125269 GGTTTGGCAT
48125279 GGCCTAGCACAC
1 GGCCTAGCACAC
48125291 GGCCTAGCACAC
1 GGCCTAGCACAC
48125303 GG
1 GG
48125305 GCGTGGGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:48128418 original size:40 final size:39
Alignment explanation
Indices: 48128374--48128596 Score: 218
Period size: 40 Copynumber: 5.5 Consensus size: 39
48128364 AAGTCGGATA
48128374 TATATATGGCACTTAGTGTGCGATTCAAGAAAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGATTCAA-AAAGCTTCGGC
* *
48128414 TATATACGGCACTTAGTGTGCGATTCAAGAAAGCCTCGG-
1 TATATATGGCACTTAGTGTGCGATTCAA-AAAGCTTCGGC
* *
48128453 TGATATATGAG-ACTTAGTGTGTGATTCAAAATAGCTTTGGC
1 T-ATATATG-GCACTTAGTGTGCGATTCAAAA-AGCTTCGGC
** *
48128494 TATATATGGCACTTAGTGTGCGAGACCAAAATAGCTTCGAC
1 TATATATGGCACTTAGTGTGCGA-TTCAAAA-AGCTTCGGC
* * * *
48128535 TATGTAAGGCACTTAGTGTGCAGAATT-ATAATAGTTTCGGC
1 TATATATGGCACTTAGTGTGC-G-ATTCA-AAAAGCTTCGGC
*
48128576 TATGTATTGGCACTTAGTGTG
1 TATATA-TGGCACTTAGTGTG
48128597 TGAGATATCG
Statistics
Matches: 154, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
39 4 0.03
40 85 0.55
41 48 0.31
42 16 0.10
43 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (39 bp):
TATATATGGCACTTAGTGTGCGATTCAAAAAGCTTCGGC
Done.