Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 151 of 349
Found at i:48142114 original size:48 final size:48
Alignment explanation
Indices: 48142048--48142334 Score: 240
Period size: 48 Copynumber: 5.9 Consensus size: 48
48142038 ATACTAGGGT
* * * * * *
48142048 TATGTGAGCCAGTGTAAGACCATATTTGGAAAATGGCAACGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATATA
* * * * *
48142096 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGACA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT--ATA
* * *
48142146 TAT-A-AGCTAGTGTAATG-CCATGTTTGGAACATAGCATCGGTATTTA
1 TATGAGAGCTAGTGTAA-GACCATGTTTGGAACATGGCATCGGCATATA
* * * * * * * **
48142192 TATGAAAGCTAGTGTACGACCATGTCTGGCACATGGTATCAGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATATA
* * *
48142240 CATGCGAGCTAGTGTAAGACCATGTTAGGAACATGGCATCGGCACTGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCA-T-ATA
* *
48142290 TATGAGAGCTAGTGTAAGAACATGTCTAGG-ACATGGCATCGGCAT
1 TATGAGAGCTAGTGTAAGACCATGT-TTGGAACATGGCATCGGCAT
48142335 CTTACCTTTT
Statistics
Matches: 186, Mismatches: 44, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
46 4 0.02
47 2 0.01
48 131 0.70
49 4 0.02
50 41 0.22
51 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATATA
Found at i:48142226 original size:96 final size:95
Alignment explanation
Indices: 48142058--48142329 Score: 339
Period size: 96 Copynumber: 2.8 Consensus size: 95
48142048 TATGTGAGCC
* * *
48142058 AGTGTAAGACCATATTTGGAAAATGGCAACGGCATTTATATGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCATGTCT
** *
48142123 GGGACATGGCATTGGCCTCGACATATAAGCT
66 -GGACATGGCATCAGCCTCGACATACAAGCT
* * * *
48142154 AGTGTAATG-CCATGTTTGGAACATAGCATCGGTATTTATATGAAAGCTAGTGTACGACCATGTC
1 AGTGTAA-GACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCATGTC
* * *
48142218 TGGCACATGGTATCAGCCTCGACATGCGAGCT
65 TGG-ACATGGCATCAGCCTCGACATACAAGCT
* * *
48142250 AGTGTAAGACCATGTTAGGAACATGGCATCGGCACTGATATATGAGAGCTAGTGTAAGAACATGT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCA-T-TTATATGAGAGCTAGTGTAAGACCATGT
48142315 CTAGGACATGGCATC
64 CT-GGACATGGCATC
48142330 GGCATCTTAC
Statistics
Matches: 149, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
95 3 0.02
96 107 0.72
97 2 0.01
98 35 0.23
99 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (95 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACCATGTCT
GGACATGGCATCAGCCTCGACATACAAGCT
Found at i:48146222 original size:13 final size:13
Alignment explanation
Indices: 48146204--48146252 Score: 89
Period size: 13 Copynumber: 3.8 Consensus size: 13
48146194 TGGCTGAAAA
48146204 TATTGAATTGAAG
1 TATTGAATTGAAG
*
48146217 TATTGAATTGAAC
1 TATTGAATTGAAG
48146230 TATTGAATTGAAG
1 TATTGAATTGAAG
48146243 TATTGAATTG
1 TATTGAATTG
48146253 CTTGTTTAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.37, C:0.02, G:0.20, T:0.41
Consensus pattern (13 bp):
TATTGAATTGAAG
Found at i:48146500 original size:20 final size:23
Alignment explanation
Indices: 48146465--48146505 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
48146455 TTTCGTAAGC
48146465 TCGTATATGATTG-TTTAATACG
1 TCGTATATGATTGTTTTAATACG
48146487 TCGTA-ATG-TTGTTTTAATA
1 TCGTATATGATTGTTTTAATA
48146506 ATAATGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.17
21 10 0.56
22 5 0.28
ACGTcount: A:0.27, C:0.07, G:0.17, T:0.49
Consensus pattern (23 bp):
TCGTATATGATTGTTTTAATACG
Found at i:48149181 original size:13 final size:13
Alignment explanation
Indices: 48149163--48149189 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48149153 TATTGTGAAC
48149163 GATGCTACATATT
1 GATGCTACATATT
48149176 GATGCTACATATT
1 GATGCTACATATT
48149189 G
1 G
48149190 TAGAAGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (13 bp):
GATGCTACATATT
Found at i:48150189 original size:26 final size:26
Alignment explanation
Indices: 48150150--48150257 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
48150140 TGGTACAAAT
48150150 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
48150176 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
48150202 TGATAATGGGTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
48150228 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
48150254 TGAT
1 TGAT
48150258 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:48151415 original size:16 final size:15
Alignment explanation
Indices: 48151389--48151418 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
48151379 ACTAGATTGG
48151389 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
48151404 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
48151419 TCGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:48151916 original size:54 final size:54
Alignment explanation
Indices: 48151834--48151973 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 54
48151824 AGGAAGCGTC
*
48151834 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
48151888 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
48151942 CTGGTGGCTCTGCCACAA-TATCTATATCTGGT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGT
48151974 AACTTCGTCA
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:48151968 original size:32 final size:27
Alignment explanation
Indices: 48151834--48151973 Score: 178
Period size: 27 Copynumber: 5.2 Consensus size: 27
48151824 AGGAAGCGTC
* *
48151834 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
*
48151861 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
* *
48151888 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGTT
48151915 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
*
48151942 CTGGTGGCTCTGCCACA-ATATCTATAT
1 CTGGTGGCTCTGCCACATATATCTGT-T
48151969 CTGGT
1 CTGGT
48151974 AACTTCGTCA
Statistics
Matches: 102, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
26 9 0.09
27 90 0.88
28 3 0.03
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:48157273 original size:26 final size:26
Alignment explanation
Indices: 48157244--48157351 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
48157234 TGGTACAAAT
48157244 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
48157270 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
48157296 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
48157322 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
48157348 TGAT
1 TGAT
48157352 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:48158828 original size:28 final size:26
Alignment explanation
Indices: 48158786--48158860 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
48158776 AAAAGCAGCT
* * *
48158786 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
* *
48158814 AAATTACTGTTATACTCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
48158840 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
48158861 GGTTAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.55
27 1 0.03
28 17 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:48159014 original size:27 final size:27
Alignment explanation
Indices: 48158968--48159186 Score: 259
Period size: 27 Copynumber: 8.1 Consensus size: 27
48158958 AAGCGTCCTT
48158968 GTGGCTATGCCACA-ATTATCTGATCTG
1 GTGGCTATGCCACATA-TATCTGATCTG
* *
48158995 GTGGCTCTGCCGCATATATCT-ATTCTG
1 GTGGCTATGCCACATATATCTGA-TCTG
**
48159022 GTGGCTATGCCACATATATCTTTTCTG
1 GTGGCTATGCCACATATATCTGATCTG
48159049 GTGGCTATGCCACA-ATTATCTGATCTG
1 GTGGCTATGCCACATA-TATCTGATCTG
* * *
48159076 GTGGTTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACATATATCTGATCTG
48159103 GTGGCTATGCCACGAT-TATCTGATCTG
1 GTGGCTATGCCAC-ATATATCTGATCTG
* * *
48159130 GTGGCTCTGCCACACATATCTGTTCTG
1 GTGGCTATGCCACATATATCTGATCTG
*
48159157 GTGGCGATGCCACA-ATTATCTGATCTG
1 GTGGCTATGCCACATA-TATCTGATCTG
48159184 GTG
1 GTG
48159187 ACTTCGTCAC
Statistics
Matches: 165, Mismatches: 19, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
26 4 0.02
27 157 0.95
28 4 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (27 bp):
GTGGCTATGCCACATATATCTGATCTG
Found at i:48159103 original size:81 final size:81
Alignment explanation
Indices: 48158968--48159186 Score: 300
Period size: 81 Copynumber: 2.7 Consensus size: 81
48158958 AAGCGTCCTT
* *
48158968 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCGCATATATCTATTCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCC
**
48159033 AC-ATATATCTTTTCTG
66 ACGAT-TATCTGATCTG
*
48159049 GTGGCTATGCCACAATTATCTGATCTGGTGGTTCTGCCACATATATCTGTTCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCC
48159114 ACGATTATCTGATCTG
66 ACGATTATCTGATCTG
* * ** *
48159130 GTGGCTCTGCCACACA-TATCTGTTCTGGTGGCGATGCCACA-ATTATCTGATCTGGTG
1 GTGGCTATGCCACA-ATTATCTGATCTGGTGGCTCTGCCACATA-TATCTGTTCTGGTG
48159187 ACTTCGTCAC
Statistics
Matches: 124, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
80 1 0.01
81 120 0.97
82 3 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (81 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCC
ACGATTATCTGATCTG
Found at i:48180667 original size:47 final size:47
Alignment explanation
Indices: 48180607--48180728 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
48180597 GCATTGGCAC
*
48180607 TAAGACAAGGATACCATGTAAGACTATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* * *
48180654 TAAGACAAAGATACCATGTAAAACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* * *
48180701 TAAGATAAGGATATCACGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
48180729 CCAAGGCATG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:48180776 original size:54 final size:54
Alignment explanation
Indices: 48180715--48180890 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
48180705 ATAAGGATAT
* *
48180715 CACGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAAT
1 CACGTAAGACCATGCCAAGGCATGACATTGATGAGTTCTATAAGGCAAGGAAAC
* * * * **
48180769 CATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGAAAAGG-TCC
1 CACGTAAGACCATGCCAAGGCATGACATTGATGAGTT-CTATAAGG-CAAGGAAAC
* * * *
48180824 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGCAA-GAATAC
1 CACGTAAGACCATGCCAAGGCATGACATTGATGAGTTCTATAAGGCAAGGAA-AC
48180877 CACGTAAGACCATG
1 CACGTAAGACCATG
48180891 TAAAGACATG
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
51 1 0.01
52 2 0.02
53 19 0.19
54 34 0.34
55 41 0.41
56 4 0.04
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (54 bp):
CACGTAAGACCATGCCAAGGCATGACATTGATGAGTTCTATAAGGCAAGGAAAC
Found at i:48180901 original size:53 final size:53
Alignment explanation
Indices: 48180715--48180920 Score: 166
Period size: 54 Copynumber: 3.8 Consensus size: 53
48180705 ATAAGGATAT
* * *
48180715 CACGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAA-AT
1 CACGTAAGACCATGCCAAGACATGACATTGATAAGTTC-ATAAAGCAA-GAATAC
* * * * *
48180769 CATGTAAGACCATGTCAAGACATGACATTGATGAGTT-ACTATAAGGAA-AAGGTCC
1 CACGTAAGACCATGCCAAGACATGACATTGATAAGTTCA-TA-AAGCAAGAA--TAC
* * * * *
48180824 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGCAAGAATAC
1 CACGTAAGACCATGCCAAGACATGACATTGATAAGTTCATAAAGCAAGAATAC
** * * * *
48180877 CACGTAAGACCATGTAAAGACATGGCAATGGTAAGTTCAAAAAG
1 CACGTAAGACCATGCCAAGACATGACATTGATAAGTTCATAAAG
48180921 GAAAAGGTTC
Statistics
Matches: 124, Mismatches: 21, Indels: 15
0.77 0.13 0.09
Matches are distributed among these distances:
52 3 0.02
53 41 0.33
54 42 0.34
55 37 0.30
56 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (53 bp):
CACGTAAGACCATGCCAAGACATGACATTGATAAGTTCATAAAGCAAGAATAC
Found at i:48186573 original size:43 final size:41
Alignment explanation
Indices: 48186518--48186630 Score: 120
Period size: 43 Copynumber: 2.7 Consensus size: 41
48186508 TACACGGCTA
* *
48186518 ACCACATGCCTGTGTGTCTAGCCTGTGTACCCTTCGACATGGCC
1 ACCACACGCCTGTGTGTCTAGGCTGTGT-CCC-TC-ACATGGCC
* * *
48186562 A-CACACGCCTGTGTGCCAAGGCTGTGTGCCTCACATGGCC
1 ACCACACGCCTGTGTGTCTAGGCTGTGTCCCTCACATGGCC
*
48186602 ACCAGACACGCCCGTGTGTCTAGGCTGTG
1 ACC--ACACGCCTGTGTGTCTAGGCTGTG
48186631 CTTGAGACTA
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
40 9 0.16
41 3 0.05
42 2 0.03
43 43 0.74
44 1 0.02
ACGTcount: A:0.17, C:0.34, G:0.27, T:0.23
Consensus pattern (41 bp):
ACCACACGCCTGTGTGTCTAGGCTGTGTCCCTCACATGGCC
Found at i:48195067 original size:43 final size:43
Alignment explanation
Indices: 48194998--48195159 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
48194988 AATGGCAACA
* * * * *
48194998 TCCCAGAC-GTGGTCATACATGTAATCAAATATCTATACCACTG
1 TCCCAGACAGTGGTCTTACACGAAATCAAATATCGATGCCA-TG
*
48195041 TCCCAGACAG-GGTCTTACACGAAATCAAATA-CGATGCTGATG
1 TCCCAGACAGTGGTCTTACACGAAATCAAATATCGATGC-CATG
* *
48195083 TCCTAGACA-TGGTCTTACACGTAAATCTCAA-ATCGATGCCAATG
1 TCCCAGACAGTGGTCTTACACG-AAATC-AAATATCGATGCC-ATG
* * *
48195127 TCCCAGA-TGTGGTCTTGCACGAAATCACATATC
1 TCCCAGACAGTGGTCTTACACGAAATCAAATATC
48195160 AGAATCCTAT
Statistics
Matches: 96, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 26 0.27
43 41 0.43
44 29 0.30
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
TCCCAGACAGTGGTCTTACACGAAATCAAATATCGATGCCATG
Found at i:48195140 original size:44 final size:44
Alignment explanation
Indices: 48195039--48195152 Score: 135
Period size: 44 Copynumber: 2.6 Consensus size: 44
48195029 TCTATACCAC
* **
48195039 TGTCCCAGACAGGGTCTTACACGAAA--TCAAATACGATGCTGA
1 TGTCCCAGACATGGTCTTACACGAAATCTCAAATACGATGCCAA
*
48195081 TGTCCTAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAA
1 TGTCCCAGACATGGTCTTACACG-AAATCTCAAATACGATGCCAA
** *
48195125 TGTCCCAGATGTGGTCTTGCACGAAATC
1 TGTCCCAGACATGGTCTTACACGAAATC
48195153 ACATATCAGA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 21 0.34
43 8 0.13
44 26 0.43
45 6 0.10
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (44 bp):
TGTCCCAGACATGGTCTTACACGAAATCTCAAATACGATGCCAA
Found at i:48663558 original size:39 final size:39
Alignment explanation
Indices: 48663514--48663671 Score: 133
Period size: 41 Copynumber: 4.0 Consensus size: 39
48663504 CGGGATTTCA
*
48663514 CGGATATATCACTAGCA-GAATGCTCTTCGGAACTTAGCC
1 CGGATATATCACTAGCACCAATGC-CTTCGGAACTTAGCC
* ** *
48663553 CGGATACATCACTAGCATGAAATGCTCTTCGGGACTTAGCC
1 CGGATATATCACTAGCA-CCAATGC-CTTCGGAACTTAGCC
* * * *
48663594 CGGAT-TAGTAACTCGCACCAATGCCTTCGGATCTTAGTC
1 CGGATATA-TCACTAGCACCAATGCCTTCGGAACTTAGCC
* * *
48663633 CGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGC
1 CGGATAT-ATCAC-TAGCACCAATGCCTTCGGAACTTAGC
48663672 TCAGACATCA
Statistics
Matches: 95, Mismatches: 18, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
39 33 0.35
40 26 0.27
41 36 0.38
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CGGATATATCACTAGCACCAATGCCTTCGGAACTTAGCC
Found at i:48663590 original size:41 final size:39
Alignment explanation
Indices: 48663514--48663598 Score: 134
Period size: 41 Copynumber: 2.1 Consensus size: 39
48663504 CGGGATTTCA
*
48663514 CGGATATATCACTAGCAGAATGCTCTTCGGAACTTAGCC
1 CGGATACATCACTAGCAGAATGCTCTTCGGAACTTAGCC
*
48663553 CGGATACATCACTAGCATGAAATGCTCTTCGGGACTTAGCC
1 CGGATACATCACTAGCA-G-AATGCTCTTCGGAACTTAGCC
48663594 CGGAT
1 CGGAT
48663599 TAGTAACTCG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 16 0.38
40 1 0.02
41 25 0.60
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
CGGATACATCACTAGCAGAATGCTCTTCGGAACTTAGCC
Found at i:48664021 original size:29 final size:29
Alignment explanation
Indices: 48663982--48664060 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
48663972 CTTAATAATC
*
48663982 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
48664012 AACTCGCACACTTAGTGCCGTGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
48664041 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
48664061 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:48664090 original size:43 final size:43
Alignment explanation
Indices: 48664042--48664144 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
48664032 TGCATTTCAA
48664042 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
48664085 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
48664128 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
48664145 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:48666044 original size:37 final size:37
Alignment explanation
Indices: 48665994--48666072 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
48665984 TTATTACGAA
* *
48665994 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
48666031 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
48666068 GTCTT
1 GTCTT
48666073 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:48666306 original size:47 final size:47
Alignment explanation
Indices: 48666191--48666380 Score: 294
Period size: 47 Copynumber: 4.1 Consensus size: 47
48666181 CCCTTCGGGA
* * * * * * *
48666191 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48666238 C--CTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48666283 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48666330 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48666377 CTTA
1 CTTA
48666381 CTATCATTTC
Statistics
Matches: 132, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
45 37 0.28
47 95 0.72
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48669781 original size:43 final size:42
Alignment explanation
Indices: 48669684--48669788 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 42
48669674 GATTTGAGAT
*
48669684 TTACATGTAAGACCATGTCTGGGACATTGGCATCGTACATGA
1 TTACATGTAAGACCATGTCTGGGACAGTGGCATCGTACATGA
*** * * * **
48669726 TTTTGTGTAAGACCCTGTTTGGGACAGTGGGATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACAGTGGCATCG-TACATGA
*
48669769 TTACATGTAAGACCACGTCT
1 TTACATGTAAGACCATGTCT
48669789 AAGACGTTGG
Statistics
Matches: 47, Mismatches: 15, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
42 28 0.60
43 19 0.40
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACAGTGGCATCGTACATGA
Found at i:48673312 original size:40 final size:40
Alignment explanation
Indices: 48673231--48673488 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
48673221 CAACCAAGTA
* * *
48673231 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
48673270 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48673310 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48673350 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
48673390 CCTTTGGGACTTAGCCCGGATATAGTAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
48673430 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
48673470 CCGTCGGGGCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48673489 TTATCATCCG
Statistics
Matches: 202, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 15 0.07
40 187 0.93
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48675612 original size:37 final size:37
Alignment explanation
Indices: 48675557--48675659 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
48675547 CGAATAGTCC
* * * *
48675557 CCACTCGTAGTTAGCGGGTCTCACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
48675594 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
48675631 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
48675660 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:48675858 original size:48 final size:48
Alignment explanation
Indices: 48675800--48676088 Score: 510
Period size: 48 Copynumber: 6.0 Consensus size: 48
48675790 ATATACACAC
*
48675800 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48675848 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48675896 ATCTCATACATATTTCACACTAGCCATTC-GCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48675943 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48675991 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** * *
48676039 ATCTCATTTATATTTCAC-CTTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACAT
48676087 AT
1 AT
48676089 TTGTCTTGTA
Statistics
Matches: 234, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
47 48 0.21
48 186 0.79
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:48675946 original size:95 final size:96
Alignment explanation
Indices: 48675800--48676088 Score: 510
Period size: 95 Copynumber: 3.0 Consensus size: 96
48675790 ATATACACAC
*
48675800 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
48675865 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
48675896 ATCTCATACATATTTCACACTAGCCATTC-GCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
48675960 CACTAGCCATTCGGCTTTACCACATATACAT
66 CACTAGCCATTCGGCTTTACCACATATACAT
**
48675991 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTTATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
48676056 C-CTTAGCCATACGGCTTTACCACATATATAT
66 CAC-TAGCCATTCGGCTTTACCACATATACAT
48676087 AT
1 AT
48676089 TTGTCTTGTA
Statistics
Matches: 186, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
95 96 0.52
96 90 0.48
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.35
Consensus pattern (96 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACAT
Found at i:48675955 original size:143 final size:144
Alignment explanation
Indices: 48675800--48676088 Score: 510
Period size: 143 Copynumber: 2.0 Consensus size: 144
48675790 ATATACACAC
*
48675800 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
48675865 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC-TAGCCATTC-GCT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCAC-CTTAGCCATACGGCT
48675928 TTACCACATATACAT
130 TTACCACATATACAT
48675943 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
**
48676008 CACTAGCCATTCGGCTTTACCACATATACATATCTCATTTATATTTCACCTTAGCCATACGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACCTTAGCCATACGGCTT
*
48676073 TACCACATATATAT
131 TACCACATATACAT
48676087 AT
1 AT
48676089 TTGTCTTGTA
Statistics
Matches: 139, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
142 1 0.01
143 119 0.86
144 19 0.14
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.35
Consensus pattern (144 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACCTTAGCCATACGGCTT
TACCACATATACAT
Found at i:48679758 original size:40 final size:40
Alignment explanation
Indices: 48679712--48680037 Score: 501
Period size: 40 Copynumber: 8.2 Consensus size: 40
48679702 CCGAATACAC
* * * *
48679712 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
48679752 AACACCAGCACGAATGCTCTTCGGGACTTAACCCTGG-TAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCC-GGATAT
* * * *
48679792 AACTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGGTAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
48679832 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
48679872 ATCATTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
48679912 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
48679952 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCTGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
48679992 ATCACTAGCACGAATGCTATTCGGGACTTAGCCCAGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
48680032 ATCACT
1 ATCACT
48680038 CTCAATTCTC
Statistics
Matches: 265, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 261 0.98
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:48681374 original size:37 final size:37
Alignment explanation
Indices: 48681319--48681421 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
48681309 CGAATAGTCC
* * * *
48681319 CCACTCGTAGTTAGCGGGTCTCACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
48681356 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
48681393 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
48681422 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:48690899 original size:40 final size:40
Alignment explanation
Indices: 48690818--48690994 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
48690808 CAACCAAGTA
* * *
48690818 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
48690857 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48690897 CCTTCGGGACTTAGCCCGGATATAGTAACT-GCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
48690936 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
48690976 CCGTCGGGGCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48690995 TTATCATCCG
Statistics
Matches: 126, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
38 1 0.01
39 49 0.39
40 76 0.60
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48690949 original size:79 final size:80
Alignment explanation
Indices: 48690818--48690994 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 80
48690808 CAACCAAGTA
* * *
48690818 CCTTCGGGATTTAG-CCGGACATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-TTATA
1 CCTTCGGGACTTAGCCCGGACATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
*
48690881 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
* *
48690897 CCTTCGGGACTTAGCCCGGATATAG-TAACT-GCACAAATGCCTTCGGGGCTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGACATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
*
48690960 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
* *
48690976 CCGTCGGGGCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48690995 TTATCATCCG
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 73 0.85
80 13 0.15
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGACATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAACTAGCACAAATG
Found at i:48693152 original size:27 final size:27
Alignment explanation
Indices: 48693122--48693299 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
48693112 ATATTGAGCC
* *
48693122 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
48693149 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
48693176 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
48693204 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
48693231 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
48693258 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
48693285 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
48693300 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:48693261 original size:82 final size:81
Alignment explanation
Indices: 48693143--48693298 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
48693133 TGCTATATAA
* * * *
48693143 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
48693208 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
48693225 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
48693289 CCCTTAGTGC
65 CACTTAGTGC
48693299 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48706757 original size:26 final size:26
Alignment explanation
Indices: 48706728--48706780 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
48706718 GAGAAAAGAA
48706728 AGAATAAGTTGCACAAGAAGTCGGCT
1 AGAATAAGTTGCACAAGAAGTCGGCT
48706754 AGAATAAGTTGCACAAGAAGTCGGCT
1 AGAATAAGTTGCACAAGAAGTCGGCT
48706780 A
1 A
48706781 ACAATTATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (26 bp):
AGAATAAGTTGCACAAGAAGTCGGCT
Found at i:48706835 original size:16 final size:17
Alignment explanation
Indices: 48706814--48706852 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
48706804 CCAAAATAGC
* *
48706814 ACAAAAAGCAGAGAAG-
1 ACAAAAAGAAAAGAAGA
48706830 ACAAAAAGAAAAGAAGA
1 ACAAAAAGAAAAGAAGA
48706847 ACAAAA
1 ACAAAA
48706853 CAAATACCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.72, C:0.10, G:0.18, T:0.00
Consensus pattern (17 bp):
ACAAAAAGAAAAGAAGA
Found at i:48710190 original size:40 final size:40
Alignment explanation
Indices: 48710107--48710349 Score: 256
Period size: 40 Copynumber: 6.1 Consensus size: 40
48710097 ATACTATTTG
* * * *
48710107 ATTCAGGGTTACCAAAGTATAAATA-GGGCAC-TATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
*
48710145 ATTCAGGGGTATCGAAGTACAAACAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * * **
48710185 ATTCAGGAGTACCAAAGTACAAACAAGGGCATATATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
** * * * *
48710225 ATTCAAAGGTGCCAAAGTACAAATAGGGGCACATATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * * * *
48710265 ACTCAGGGGTACCGAAGTACAAATACGGGCCCGTATGTAC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * *
48710305 ATTCAGGGGTTCTGAAGTACAAAAAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
48710345 ATTCA
1 ATTCA
48710350 ACAATAATTA
Statistics
Matches: 169, Mismatches: 34, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
38 20 0.12
39 6 0.04
40 143 0.85
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (40 bp):
ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
Found at i:48710191 original size:20 final size:20
Alignment explanation
Indices: 48710132--48710191 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
48710122 AGTATAAATA
48710132 GGGCAC-TATGTGCATTCAG
1 GGGCACGTATGTGCATTCAG
* * * **
48710151 GGGTATCG-AAGTACAAACAG
1 GGGCA-CGTATGTGCATTCAG
48710171 GGGCACGTATGTGCATTCAG
1 GGGCACGTATGTGCATTCAG
48710191 G
1 G
48710192 AGTACCAAAG
Statistics
Matches: 28, Mismatches: 10, Indels: 5
0.65 0.23 0.12
Matches are distributed among these distances:
19 6 0.21
20 22 0.79
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (20 bp):
GGGCACGTATGTGCATTCAG
Found at i:48710308 original size:120 final size:118
Alignment explanation
Indices: 48710118--48710350 Score: 315
Period size: 120 Copynumber: 2.0 Consensus size: 118
48710108 TTCAGGGTTA
* * * *
48710118 CCAAAGTATAAATAGGGCACTATGTGCATTCAGGGGTATCGAAGTACAAACAGGGGCACGTATGT
1 CCAAAGTACAAATAGGGCACTATGTGCACTCAGGGGTACCGAAGTACAAACACGGGCACGTATGT
* *
48710183 GCATTCAGGAGTACCAAAGTACAAACAA-GGGCATATATGTGCATTCAAAGGTG
66 ACATTCAGGAGTACCAAAGTACAAA-AAGGGGCACATATGTGCATTCAAAGGTG
* *
48710236 CCAAAGTACAAATAGGGGCACATATGTGCACTCAGGGGTACCGAAGTACAAATACGGGCCCGTAT
1 CCAAAGTACAAATA-GGGCAC-TATGTGCACTCAGGGGTACCGAAGTACAAACACGGGCACGTAT
* * ** *
48710301 GTACATTCAGGGGTTCTGAAGTACAAAAAGGGGCACGTATGTGCATTCAA
64 GTACATTCAGGAGTACCAAAGTACAAAAAGGGGCACATATGTGCATTCAA
48710351 CAATAATTAT
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
118 13 0.13
119 8 0.08
120 78 0.79
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (118 bp):
CCAAAGTACAAATAGGGCACTATGTGCACTCAGGGGTACCGAAGTACAAACACGGGCACGTATGT
ACATTCAGGAGTACCAAAGTACAAAAAGGGGCACATATGTGCATTCAAAGGTG
Found at i:48714815 original size:37 final size:37
Alignment explanation
Indices: 48714765--48714843 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
48714755 TTATTACGAA
* * *
48714765 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
48714802 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
48714839 GTCTT
1 GTCTT
48714844 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:48715087 original size:47 final size:47
Alignment explanation
Indices: 48714962--48715443 Score: 784
Period size: 47 Copynumber: 10.1 Consensus size: 47
48714952 CCCTTCGGGA
* * * * * *
48714962 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
48715009 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48715058 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48715105 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48715154 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48715201 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48715248 TTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48715297 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48715344 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48715391 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48715440 CTTA
1 CTTA
48715444 CTATCATTTC
Statistics
Matches: 411, Mismatches: 16, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
47 239 0.58
49 172 0.42
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48715126 original size:96 final size:96
Alignment explanation
Indices: 48714962--48715443 Score: 810
Period size: 96 Copynumber: 5.0 Consensus size: 96
48714952 CCCTTCGGGA
* * * * * * * *
48714962 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
48715027 ACTTCCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
48715058 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
48715123 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
48715154 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
48715217 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
48715248 TTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
48715311 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
48715344 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
48715409 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
48715440 CTTA
1 CTTA
48715444 CTATCATTTC
Statistics
Matches: 369, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 93 0.25
96 276 0.75
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48715226 original size:143 final size:143
Alignment explanation
Indices: 48714962--48715443 Score: 833
Period size: 143 Copynumber: 3.4 Consensus size: 143
48714952 CCCTTCGGGA
* * * * * * *
48714962 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
48715025 ACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTCCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
48715090 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
*
48715105 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
48715170 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
48715235 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
48715248 TTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
48715313 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
48715378 TCGGCCATTAGGC
131 TCGGCCATTAGGC
48715391 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
48715444 CTATCATTTC
Statistics
Matches: 324, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
143 286 0.88
144 1 0.00
145 37 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:48723622 original size:28 final size:28
Alignment explanation
Indices: 48723559--48723681 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
48723549 ATATTAAGTC
*
48723559 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
48723586 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
48723614 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
48723642 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
48723671 CGCACACTTAG
1 CGCACACTTAG
48723682 CGCCAATCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.25
28 51 0.57
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:48730723 original size:39 final size:40
Alignment explanation
Indices: 48730484--48730705 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
48730474 CAGATGATAA
* * * *
48730484 CCGGGCTAAGTCCCGATGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
48730524 CCGGGGTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
48730564 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
48730604 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48730644 CCGGGCTAAGTCCCGAAGGCATTGGTGCGA-TTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48730683 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
48730706 GAGGAAGTAG
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 31 0.19
40 132 0.81
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48738665 original size:40 final size:40
Alignment explanation
Indices: 48738610--48738906 Score: 413
Period size: 40 Copynumber: 7.5 Consensus size: 40
48738600 CGGATGATAA
* * *
48738610 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
48738650 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48738690 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
48738730 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
48738770 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48738810 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
48738850 CCGGGCTATGTCCCGAAGGCA-TTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
48738889 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48738907 TACTTGGCTT
Statistics
Matches: 234, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
38 15 0.06
39 15 0.06
40 204 0.87
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48743933 original size:24 final size:24
Alignment explanation
Indices: 48743906--48743953 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
48743896 CCCACTTTTT
48743906 CGGGTTTTCAGCCTTT-CAGCTTTC
1 CGGGTTTTCAGCCTTTGCAG-TTTC
48743930 CGGGTTTTCAGCCTTTGCAGTTTC
1 CGGGTTTTCAGCCTTTGCAGTTTC
48743954 AAATCCAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 20 0.87
25 3 0.13
ACGTcount: A:0.08, C:0.27, G:0.23, T:0.42
Consensus pattern (24 bp):
CGGGTTTTCAGCCTTTGCAGTTTC
Found at i:48745740 original size:46 final size:46
Alignment explanation
Indices: 48745687--48745819 Score: 160
Period size: 46 Copynumber: 2.9 Consensus size: 46
48745677 GGATGTTTGC
* *
48745687 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA-
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-ACGAG
* *** * *
48745733 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGAACGAG
*
48745780 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48745820 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
46 36 0.51
47 35 0.49
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAACGAG
Found at i:48749961 original size:15 final size:15
Alignment explanation
Indices: 48749943--48749983 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
48749933 TATATCTGTG
48749943 AAATTTTCGTGTTTT
1 AAATTTTCGTGTTTT
48749958 AAATTTTCGTGTTTT
1 AAATTTTCGTGTTTT
48749973 AAATTTATCGT
1 AAATTT-TCGT
48749984 TTGAGTGTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 21 0.84
16 4 0.16
ACGTcount: A:0.24, C:0.07, G:0.12, T:0.56
Consensus pattern (15 bp):
AAATTTTCGTGTTTT
Found at i:48751179 original size:56 final size:56
Alignment explanation
Indices: 48751116--48751226 Score: 161
Period size: 56 Copynumber: 2.0 Consensus size: 56
48751106 ACCATGCCAT
** *
48751116 CGATATATGTGTGTGAGTAAGACCACGTT-TAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCAAGTAAGACCA-GTTCTAATACGTTGACATCGATATGTGATTC
* *
48751172 CGATATATGTGTGCAAGTAAGACCAGTTCTAGTATGTTGACATCGATATGTGATT
1 CGATATATGTGTGCAAGTAAGACCAGTTCTAATACGTTGACATCGATATGTGATT
48751227 ACATGTAAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
55 3 0.06
56 46 0.94
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTGCAAGTAAGACCAGTTCTAATACGTTGACATCGATATGTGATTC
Found at i:48751906 original size:6 final size:6
Alignment explanation
Indices: 48751895--48751924 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
48751885 TATGGTTATG
*
48751895 TTTGGT TGTGGT TTTGGT TTTGGT TTTGGT
1 TTTGGT TTTGGT TTTGGT TTTGGT TTTGGT
48751925 GATTCGGCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.37, T:0.63
Consensus pattern (6 bp):
TTTGGT
Found at i:48754162 original size:40 final size:39
Alignment explanation
Indices: 48754075--48754197 Score: 131
Period size: 39 Copynumber: 3.1 Consensus size: 39
48754065 ATACTAGTTG
* * * * * *
48754075 ATTCAGGGTTACCAAAGTATAAATAGGGCACGTATGTGC
1 ATTCAGGGGTATCGAAGTACAAACAGGGCACGTATATGC
* *
48754114 GTTCAGGGGTA-CTGAAGTACAAACAAGGGCACGTATATGT
1 ATTCAGGGGTATC-GAAGTACAAAC-AGGGCACGTATATGC
* *
48754154 ATTTAGGGGTATCGAAGTACAAACAGGGCACGTATGTGC
1 ATTCAGGGGTATCGAAGTACAAACAGGGCACGTATATGC
48754193 ATTCA
1 ATTCA
48754198 AAAACAATTA
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 34 0.49
40 33 0.48
41 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (39 bp):
ATTCAGGGGTATCGAAGTACAAACAGGGCACGTATATGC
Found at i:48756566 original size:25 final size:25
Alignment explanation
Indices: 48756520--48756570 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
48756510 CCCTTATAAT
** *
48756520 GTCAAAATGACCATTTTGCCCCTAG
1 GTCAAAATGACCATGATACCCCTAG
48756545 GTCAAAATGACCATGATACCCCTAG
1 GTCAAAATGACCATGATACCCCTAG
48756570 G
1 G
48756571 GATATGCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (25 bp):
GTCAAAATGACCATGATACCCCTAG
Found at i:48758540 original size:47 final size:47
Alignment explanation
Indices: 48758487--48758912 Score: 638
Period size: 47 Copynumber: 9.1 Consensus size: 47
48758477 TTAGGATTTT
* ** * * *
48758487 ATGTGATAAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48758534 ATGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48758581 ATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48758628 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
48758675 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48758722 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
48758769 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
48758816 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
48758863 ATGTGATGAATGTGGAA-GTGTATATATGTGATAAAGCAGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
48758910 ATG
1 ATG
48758913 CGAAATGTGC
Statistics
Matches: 355, Mismatches: 23, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 352 0.99
48 3 0.01
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:48758822 original size:22 final size:22
Alignment explanation
Indices: 48758794--48758869 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
48758784 ACATGCATAT
48758794 ATGTGATAAGGTCGAATGGCCA
1 ATGTGATAAGGTCGAATGGCCA
* *
48758816 ATGTGATGAATGT-GAACAT-GCATA
1 ATGTGAT-AAGGTCG-A-ATGGC-CA
48758840 TATGTGATAAGG-CAGAATGGCCA
1 -ATGTGATAAGGTC-GAATGGCCA
48758863 ATGTGAT
1 ATGTGAT
48758870 GAATGTGGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGTCGAATGGCCA
Found at i:48758944 original size:46 final size:46
Alignment explanation
Indices: 48758894--48759068 Score: 244
Period size: 46 Copynumber: 3.8 Consensus size: 46
48758884 ATATATGTGA
* *
48758894 TAAAGCAGAATGGCTAATGCGAAATGTGCATGAGATGGATATGAGG
1 TAAAGCAGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
* *
48758940 TAAAGCCGAATGGCTAATGCAAAACGTGTATGAGATGGATATGAGG
1 TAAAGCAGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
* *
48758986 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGG
1 TAAAGCAGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
* * **
48759032 TAAAGCCA-AATGGCTAATGTGAGATATGTATGAGATG
1 TAAAG-CAGAATGGCTAATGCGAAACGTGTATGAGATG
48759069 TGTATATATA
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
46 116 0.99
47 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.31, T:0.23
Consensus pattern (46 bp):
TAAAGCAGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
Found at i:48760610 original size:40 final size:40
Alignment explanation
Indices: 48760555--48760929 Score: 651
Period size: 40 Copynumber: 9.4 Consensus size: 40
48760545 TGAGAGTTAT
*
48760555 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
48760595 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
48760635 ATATATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
48760675 ATATATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
48760715 ATATATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
48760755 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* * *
48760795 ATGTATCCGGGCTACGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
48760835 ATATATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
48760875 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
48760915 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
48760930 ACCTCGAAGG
Statistics
Matches: 320, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 320 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:48760711 original size:23 final size:23
Alignment explanation
Indices: 48760645--48760751 Score: 76
Period size: 23 Copynumber: 5.2 Consensus size: 23
48760635 ATATATCCAG
48760645 GCTAAGTTCCGAAGAGCATTCGT
1 GCTAAGTTCCGAAGAGCATTCGT
* * *
48760668 GCT-AG-T--G-ATA-TATTCGG
1 GCTAAGTTCCGAAGAGCATTCGT
48760685 GCTAAGTTCCGAAGAGCATTCGT
1 GCTAAGTTCCGAAGAGCATTCGT
* * *
48760708 GCT-AG-T--G-ATA-TATTCGG
1 GCTAAGTTCCGAAGAGCATTCGT
48760725 GCTAAGTTCCGAAGAGCATTCGT
1 GCTAAGTTCCGAAGAGCATTCGT
48760748 GCTA
1 GCTA
48760752 GTGATATATC
Statistics
Matches: 60, Mismatches: 12, Indels: 24
0.62 0.12 0.25
Matches are distributed among these distances:
17 16 0.27
18 8 0.13
19 4 0.07
21 4 0.07
22 8 0.13
23 20 0.33
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (23 bp):
GCTAAGTTCCGAAGAGCATTCGT
Found at i:48761047 original size:57 final size:57
Alignment explanation
Indices: 48760957--48761088 Score: 169
Period size: 57 Copynumber: 2.3 Consensus size: 57
48760947 GCTGGAATTA
* *
48760957 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAG-TAG
1 TGAGGCACTGTGTGTGCGAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTTAG
* * * * *
48761013 TTGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCGCTATGTGTGCGAAATCAGTTAG
1 -TGAGGCACTGTGTGTGCGAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTTAG
*
48761071 TG-GGCACTGTGTATGCGA
1 TGAGGCACTGTGTGTGCGA
48761089 AGTGTGTTTC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 14 0.22
57 48 0.74
58 3 0.05
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCGAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTTAG
Found at i:48761597 original size:17 final size:17
Alignment explanation
Indices: 48761575--48761608 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
48761565 AGTTGATTTT
48761575 CCTTTGGAAATAAGTTA
1 CCTTTGGAAATAAGTTA
48761592 CCTTTGGAAATAAGTTA
1 CCTTTGGAAATAAGTTA
48761609 AGTTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (17 bp):
CCTTTGGAAATAAGTTA
Found at i:48762395 original size:386 final size:386
Alignment explanation
Indices: 48761605--48762763 Score: 2311
Period size: 386 Copynumber: 3.0 Consensus size: 386
48761595 TTGGAAATAA
48761605 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
1 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
48761670 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
66 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
48761735 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
131 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
48761800 GTAT-AAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
196 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
48761864 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
261 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
48761929 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
326 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
48761990 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
1 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
48762055 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
66 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
48762120 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
131 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
48762185 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
196 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
48762250 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
261 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
48762315 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
326 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
48762376 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
1 GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
48762441 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
66 TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
48762506 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
131 TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
48762571 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
196 GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
48762636 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
261 TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
48762701 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
326 CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
48762762 GT
1 GT
48762764 GTGGGGTTCA
Statistics
Matches: 773, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
385 199 0.26
386 574 0.74
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.36
Consensus pattern (386 bp):
GTTAAGTTAAATATTGATGCAAGATGTTAACATAATCTCGTATCAGCTTATATATGTTGCTGAAT
TGAGAATTTAAAACCTTCAGCTACTGTATCAGTGGTTACTTGAAATAGCCGAAGATAAAGGATAG
TATTAAATTCTTATTGATAGTGTTTTATTGATGAATGGGTGTGTGAAAGATTATCTAAGTTACAT
GTATAAAAAAAATATTTTCATAAGATGTTAAATGAGTGTTGTCATGAACCAAATGAATATATATA
TTTGAGTTATTCAGGCCTTGTGCCTAGTAGGTTTGGGACCGGTGAAGTGTATACTAGGCTAATAG
CCTAATTAGTTGATGGCTGTCGAGTTTATTCAGACTTTGGGTTAAGTAGGCTAGAACCTGT
Found at i:48764930 original size:47 final size:47
Alignment explanation
Indices: 48764877--48765302 Score: 629
Period size: 47 Copynumber: 9.1 Consensus size: 47
48764867 TTAGGATTTT
* ** * * *
48764877 ATGTGATAAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48764924 ATGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48764971 ATGTGATGAATGTGAACATGAATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48765018 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
48765065 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48765112 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48765159 ATGTGATGAATGTGAATATGCATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
48765206 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
48765253 ATGTGATGAATGTGGAA-GTGTATATATGTGATAAAGCAGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
48765300 ATG
1 ATG
48765303 CGAAATGTGC
Statistics
Matches: 353, Mismatches: 25, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
47 350 0.99
48 3 0.01
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:48765175 original size:22 final size:22
Alignment explanation
Indices: 48765150--48765221 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
48765140 TGATAAGGCC
48765150 GAATGACCAATGTGATGAATGT
1 GAATGACCAATGTGATGAATGT
* *
48765172 GAAT-ATGCATATATGTGAT-AAGGT
1 GAATGA--C-CA-ATGTGATGAATGT
*
48765196 CGAATGGCCAATGTGATGAATGT
1 -GAATGACCAATGTGATGAATGT
48765219 GAA
1 GAA
48765222 CATGCATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
21 1 0.03
22 14 0.37
23 6 0.16
24 6 0.16
25 11 0.29
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (22 bp):
GAATGACCAATGTGATGAATGT
Found at i:48765341 original size:46 final size:46
Alignment explanation
Indices: 48765284--48765458 Score: 251
Period size: 46 Copynumber: 3.8 Consensus size: 46
48765274 ATATATGTGA
* * *
48765284 TAAAGCAGAATGGCTAATGCGAAATGTGCATGAGATGGATATGAGG
1 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
* *
48765330 TACAGCCGAATGGCTAATGCAAAACGTGTATGAGATGGATATGAGG
1 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
*
48765376 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGG
1 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
* * * **
48765422 TAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
48765459 TGTATATATA
Statistics
Matches: 116, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 116 1.00
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.23
Consensus pattern (46 bp):
TAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
Found at i:48766995 original size:40 final size:40
Alignment explanation
Indices: 48766940--48767274 Score: 598
Period size: 40 Copynumber: 8.4 Consensus size: 40
48766930 TGAGAGTTAT
*
48766940 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
48766980 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
48767020 ATATATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
48767060 ATATATTCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
48767100 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
48767140 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
48767180 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
48767220 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
48767260 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
48767275 ACCTCGAAGG
Statistics
Matches: 285, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 285 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:48767096 original size:23 final size:23
Alignment explanation
Indices: 48767030--48767096 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
48767020 ATATATCCAG
48767030 GCTAAGTTCCGAAGAGCATTCGT
1 GCTAAGTTCCGAAGAGCATTCGT
* * *
48767053 GCT-AG-T--G-ATA-TATTCGG
1 GCTAAGTTCCGAAGAGCATTCGT
48767070 GCTAAGTTCCGAAGAGCATTCGT
1 GCTAAGTTCCGAAGAGCATTCGT
48767093 GCTA
1 GCTA
48767097 GTGATATATC
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
17 8 0.25
18 4 0.12
19 2 0.06
21 2 0.06
22 4 0.12
23 12 0.38
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (23 bp):
GCTAAGTTCCGAAGAGCATTCGT
Found at i:48767421 original size:56 final size:56
Alignment explanation
Indices: 48767302--48767432 Score: 167
Period size: 56 Copynumber: 2.3 Consensus size: 56
48767292 GCTGGAATTA
* *
48767302 TGAGGCACTGTGTGTGCAAGTTCTCCAACGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCGAGTTCTCCAACGAGCACTATGTGTGCCAAATCAGTAGT
* * * *
48767358 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCGCTATGTGTGCGAAATCAGTTAG-
1 TGAGGCACTGTGTGTGCGAGTTCTCCAA-CGAGCACTATGTGTGCCAAATCAG-TAGT
*
48767415 TG-GGCACTGTGTATGCGA
1 TGAGGCACTGTGTGTGCGA
48767433 AGTGTGTTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
56 39 0.60
57 23 0.35
58 3 0.05
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (56 bp):
TGAGGCACTGTGTGTGCGAGTTCTCCAACGAGCACTATGTGTGCCAAATCAGTAGT
Found at i:48767941 original size:17 final size:17
Alignment explanation
Indices: 48767919--48767952 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
48767909 AGTTTATTTT
48767919 CCTTTGGAAATAAGTTA
1 CCTTTGGAAATAAGTTA
48767936 CCTTTGGAAATAAGTTA
1 CCTTTGGAAATAAGTTA
48767953 AGTTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (17 bp):
CCTTTGGAAATAAGTTA
Found at i:48771289 original size:47 final size:47
Alignment explanation
Indices: 48771230--48771655 Score: 629
Period size: 47 Copynumber: 9.1 Consensus size: 47
48771220 TTAGGATTTT
* ** * * *
48771230 ATGTGATAAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
48771277 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
48771324 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
48771371 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
48771418 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
48771465 ATGTGATGAATGTGAACATGCATATGTGTGATAACGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
48771512 ATGTGATGAATGTGAATATACATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
48771559 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
48771606 ATATGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
48771653 ATG
1 ATG
48771656 CGAAATGTGT
Statistics
Matches: 352, Mismatches: 26, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
47 349 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:48771377 original size:22 final size:22
Alignment explanation
Indices: 48771350--48771471 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
48771340 CATGCATATG
48771350 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
48771372 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
48771395 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
* *
48771419 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
48771442 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
48771466 TGTGAT
1 TGTGAT
48771472 GAATGTGAAC
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 24 0.32
23 16 0.22
24 16 0.22
25 18 0.24
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:48771733 original size:91 final size:92
Alignment explanation
Indices: 48771629--48771810 Score: 276
Period size: 91 Copynumber: 2.0 Consensus size: 92
48771619 GGAAGTGTAT
* * *
48771629 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGG-AAAGCCGAAT
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAAT
*
48771693 GGCTAATGCGAAACGTGTATGAGATGG
66 GGCTAATGCGAAACATGTATGAGATGG
* *
48771720 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGGGATGGATATGTGGTAAAGCCAAAT
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAAT
* * *
48771785 GGCTAATGTGAGATATGTATGAGATG
66 GGCTAATGCGAAACATGTATGAGATG
48771811 TGTATATATA
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
91 50 0.62
92 31 0.38
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.24
Consensus pattern (92 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCAAAT
GGCTAATGCGAAACATGTATGAGATGG
Found at i:48771750 original size:46 final size:46
Alignment explanation
Indices: 48771629--48771810 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
48771619 GGAAGTGTAT
* *
48771629 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
48771675 ATATGAGG-AAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
48771720 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGGGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
48771766 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
48771811 TGTATATATA
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 44 0.35
46 81 0.65
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:48776170 original size:27 final size:27
Alignment explanation
Indices: 48776122--48776183 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
48776112 GTGTACCTGG
* *
48776122 GCCCCTAATCGATAAAATGACTATTAT
1 GCCCCTATTTGATAAAATGACTATTAT
* *
48776149 GCCTCTATTTGATAAAATGACTGTTAT
1 GCCCCTATTTGATAAAATGACTATTAT
48776176 GCCCCTAT
1 GCCCCTAT
48776184 GAGATATATG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34
Consensus pattern (27 bp):
GCCCCTATTTGATAAAATGACTATTAT
Found at i:48776189 original size:27 final size:27
Alignment explanation
Indices: 48776132--48776189 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
48776122 GCCCCTAATC
* **
48776132 GATAAAATGACTATTATGCCTCTATTT
1 GATAAAATGACTATTATGCCCCTATGA
*
48776159 GATAAAATGACTGTTATGCCCCTATGA
1 GATAAAATGACTATTATGCCCCTATGA
48776186 GATA
1 GATA
48776190 TATGATCATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (27 bp):
GATAAAATGACTATTATGCCCCTATGA
Found at i:48776825 original size:18 final size:19
Alignment explanation
Indices: 48776794--48776831 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
48776784 AGGCCTCTTT
*
48776794 GGATTTTATTTTTAATTTG
1 GGATTTTATATTTAATTTG
*
48776813 GGATTTTA-ATTTACTTTG
1 GGATTTTATATTTAATTTG
48776831 G
1 G
48776832 ATATAACTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.21, C:0.03, G:0.18, T:0.58
Consensus pattern (19 bp):
GGATTTTATATTTAATTTG
Found at i:48780893 original size:63 final size:62
Alignment explanation
Indices: 48780648--48780895 Score: 178
Period size: 68 Copynumber: 3.8 Consensus size: 62
48780638 GATGGTATGT
** * * * * *
48780648 AGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACGAGACATTATGA
1 AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTG-ACAAGAGAGCTACGAG--A-TA-AA
48780713 TG
61 TG
* * * * * *
48780715 TAACTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATG
1 -AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGT-GACAAGAGAGCTACGAGATAAATG
* * *
48780779 TAGCTAGGTTACATGCGTGGTTCCTGGTGAAG-G-ACACCATGTGGACAAGAGAGCTACGAGATA
1 -AGCTAGGTCACATGGGTGG-TAC---T-AAGTGTACACCATGT-GACAAGAGAGCTACGAGATA
48780842 AACTG
59 AA-TG
*
48780847 -GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTG-ACAAGAGAGC
48780896 CAAAATTATG
Statistics
Matches: 144, Mismatches: 26, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
61 3 0.02
62 3 0.02
63 18 0.12
64 18 0.12
65 6 0.04
66 17 0.12
67 29 0.20
68 47 0.33
69 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (62 bp):
AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGACAAGAGAGCTACGAGATAAATG
Found at i:48785567 original size:45 final size:45
Alignment explanation
Indices: 48785507--48785639 Score: 167
Period size: 45 Copynumber: 3.0 Consensus size: 45
48785497 GAATCTATTA
* * * *
48785507 CGATGCCGATGTCCCAGACAAGGTCTTACACGTAACCACATATAT
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATAT
* *
48785552 TGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATAT
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATAT
* * * * *
48785597 CAATTCCAATGTCCCAAACATGGTCTTACTCGAAAATACATAT
1 CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATAT
48785640 CAAAATCCTA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (45 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATAT
Found at i:48790389 original size:27 final size:27
Alignment explanation
Indices: 48790359--48790535 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
48790349 ATATTGAGTC
* *
48790359 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
48790386 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
48790413 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
48790441 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
48790468 CGCACACTTAGTGC-ATCATATTC-TTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
48790494 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
48790521 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48790536 GTACAATTTA
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 22 0.17
27 82 0.65
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:48790518 original size:53 final size:54
Alignment explanation
Indices: 48790359--48790535 Score: 205
Period size: 55 Copynumber: 3.3 Consensus size: 54
48790349 ATATTGAGTC
* * * * * *
48790359 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
48790413 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
48790468 CGCACACTTAGTGC-ATCATATTC-TTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
48790521 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48790536 GTACAATTTA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
53 38 0.37
54 21 0.20
55 45 0.43
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:48798519 original size:27 final size:27
Alignment explanation
Indices: 48798489--48798666 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48798479 ATATTGAGTC
* * * *
48798489 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48798516 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48798543 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48798571 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48798598 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48798625 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48798652 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48798667 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48798628 original size:82 final size:81
Alignment explanation
Indices: 48798510--48798665 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48798500 TGCTATATAA
* *
48798510 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48798575 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
48798592 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48798656 CACTTAGTGC
65 CACTTAGTGC
48798666 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48809400 original size:21 final size:21
Alignment explanation
Indices: 48809370--48809410 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
48809360 ATAATTCGGC
*
48809370 TACTTGTACA-TCATGGTGAA
1 TACTTGTACACCCATGGTGAA
48809390 TACTTAGTACACCCATGGTGA
1 TACTT-GTACACCCATGGTGA
48809411 CCTAGCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 5 0.28
22 8 0.44
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (21 bp):
TACTTGTACACCCATGGTGAA
Found at i:48822500 original size:42 final size:42
Alignment explanation
Indices: 48822451--48822646 Score: 144
Period size: 43 Copynumber: 4.6 Consensus size: 42
48822441 AGATTCCATA
* * * * *
48822451 TAAGACCATATCTGGGATATGGCATTGGTATGCGATTTCGTG
1 TAAGACCATATCTAGGATATGGCATTGATATGAGACTTCATG
** * * * *
48822493 TAAGACCACGTCTAGGACATGGC-TTCAAAAATGAGACTTCATA
1 TAAGACCATATCTAGGATATGGCATT--GATATGAGACTTCATG
* * * * *
48822536 TAAGACTATATCTGGGATATGGCATCGATATGAGACATCGTG
1 TAAGACCATATCTAGGATATGGCATTGATATGAGACTTCATG
* * * * * *
48822578 TAAGACCATAGCTAGGCTATTGGCATCGATTTGTGA-TCCCATG
1 TAAGACCATATCTAGGATA-TGGCATTGATATGAGACT-TCATG
48822621 TAAGACCATATCTAGGATATGGCATT
1 TAAGACCATATCTAGGATATGGCATT
48822647 AGTATCTTAC
Statistics
Matches: 115, Mismatches: 34, Indels: 10
0.72 0.21 0.06
Matches are distributed among these distances:
41 2 0.02
42 51 0.44
43 61 0.53
44 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTAGGATATGGCATTGATATGAGACTTCATG
Found at i:48827579 original size:17 final size:17
Alignment explanation
Indices: 48827559--48827597 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
48827549 CCACACAACC
48827559 ATGTGACCCACACGGCT
1 ATGTGACCCACACGGCT
* * *
48827576 ATGTGTCCCAGAGGGCT
1 ATGTGACCCACACGGCT
48827593 ATGTG
1 ATGTG
48827598 TCCAACATGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (17 bp):
ATGTGACCCACACGGCT
Found at i:48829728 original size:29 final size:29
Alignment explanation
Indices: 48829650--48829732 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 29
48829640 ATCTACCACC
* * *
48829650 GATACATAGTACTTGATAAATATAACACT
1 GATACAAAGTACTTGATAACTGTAACACT
** * * *
48829679 GGCACAGAGTGCCTGATAACTGTAACACT
1 GATACAAAGTACTTGATAACTGTAACACT
*
48829708 GATACAAAGTACTTGACAACTGTAA
1 GATACAAAGTACTTGATAACTGTAA
48829733 TCATCGACAC
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (29 bp):
GATACAAAGTACTTGATAACTGTAACACT
Found at i:48834609 original size:53 final size:53
Alignment explanation
Indices: 48834431--48834634 Score: 201
Period size: 53 Copynumber: 3.8 Consensus size: 53
48834421 AGGGTTTAAG
* * * * * *
48834431 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * * * *
48834485 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGACAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAA
* * *
48834540 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTTAGTTCATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* * *
48834593 GATACCACGTAAGACCATGTCAAGACATGACAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
48834635 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 45 0.38
54 35 0.29
55 39 0.33
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:48841166 original size:253 final size:252
Alignment explanation
Indices: 48840690--48841181 Score: 677
Period size: 253 Copynumber: 1.9 Consensus size: 252
48840680 CATCCCAAAA
* * *
48840690 TAGGGCCTAAACGGAACAGTGGTTGTGAAACCATGAATCCGAGATAGAAAAGTTTATTCGGATTA
1 TAGGGCCTAAACGGAACAGTGGTTGTGAAACCATCAATCCGAGATAGAAAAATTTATTCCGATTA
* * * * *
48840755 ATTTTTATAATTTACCTAGTGATTAGATGCATGTGTTAGAGTATCGATGGAAACTTTTATAGATA
66 ATTTTTATAATTTACCGAGTGATTAGATGCATGTGTTAGAATATCGATAGAAAATTTCATAGATA
* * *
48840820 ACATGCTTAATTTACCTACTAGGGCTTAATTGCAAAAGTTGATAAATATGAGTTTTAGATGCTAA
131 ACATGCTTAATTTACCTACTAGGACTTAATTGCAAAAGTTGATAAATATGAATTCTAGATGCTAA
* *
48840885 AGCATTAAATTGAAGAGTATAATTGAAGTAGAGGTCCTTAAATGTGACAGGCCGAAT
196 AGCATTAAATTGAAGAGCATAATTGAAGTAGAAGTCCTTAAATGTGACAGGCCGAAT
* * * *
48840942 TAGGGCCTAAATGGAATAGTGGTTTTGAAACCA-CAATTTCGA-AGTAGAAAAATTTATTCCGAT
1 TAGGGCCTAAACGGAACAGTGGTTGTGAAACCATCAA-TCCGAGA-TAGAAAAATTTATTCCGAT
*
48841005 TAATTTTTATAATTTATCGAGTGATTAGAATGCATGTGTTAGAATATCGATAGAAAATTTCAT-G
64 TAATTTTTATAATTTACCGAGTGATTAG-ATGCATGTGTTAGAATATCGATAGAAAATTTCATAG
*** * *
48841069 AATTGTATG-TCTAATTTGCCTATTAGGACTTAATTGCAAAAGTTGATAAATATGAATTCTAGAT
128 -ATAACATGCT-TAATTTACCTACTAGGACTTAATTGCAAAAGTTGATAAATATGAATTCTAGAT
* * *
48841133 GTTAAAGGATTTAATTGAAGAGCATAATTGAAGTAGAAGTCCTTAAATG
191 GCTAAAGCATTAAATTGAAGAGCATAATTGAAGTAGAAGTCCTTAAATG
48841182 GTAATTATAC
Statistics
Matches: 209, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
251 3 0.01
252 79 0.38
253 127 0.61
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (252 bp):
TAGGGCCTAAACGGAACAGTGGTTGTGAAACCATCAATCCGAGATAGAAAAATTTATTCCGATTA
ATTTTTATAATTTACCGAGTGATTAGATGCATGTGTTAGAATATCGATAGAAAATTTCATAGATA
ACATGCTTAATTTACCTACTAGGACTTAATTGCAAAAGTTGATAAATATGAATTCTAGATGCTAA
AGCATTAAATTGAAGAGCATAATTGAAGTAGAAGTCCTTAAATGTGACAGGCCGAAT
Found at i:48844181 original size:28 final size:28
Alignment explanation
Indices: 48844145--48844202 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
48844135 TAGAGTGGGA
* *
48844145 ATTTGATGTTTCTGTGGGTAAATAAATT
1 ATTTGATGTTTCCGCGGGTAAATAAATT
48844173 ATTTGATGTTTCCGCGGGTAAATAAATT
1 ATTTGATGTTTCCGCGGGTAAATAAATT
48844201 AT
1 AT
48844203 CAACATGTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (28 bp):
ATTTGATGTTTCCGCGGGTAAATAAATT
Found at i:48844829 original size:53 final size:53
Alignment explanation
Indices: 48844646--48844853 Score: 209
Period size: 53 Copynumber: 3.9 Consensus size: 53
48844636 CATTAAGGTT
* * * * *
48844646 TAAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGG
* * * * * * *
48844700 TAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGG
* * * * *
48844755 TAAAGATCCCATGTAAGACCATACCAAGGCATGGCAATGGTGAGTTCATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
* * *
48844808 CAAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
48844854 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 30, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 44 0.36
54 39 0.32
55 39 0.32
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
Found at i:48852099 original size:40 final size:40
Alignment explanation
Indices: 48852054--48852540 Score: 796
Period size: 40 Copynumber: 12.2 Consensus size: 40
48852044 CAAGCTCAAT
* * * * *
48852054 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48852094 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
48852134 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
48852174 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48852214 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48852254 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48852294 TGCCTTCGGGTCTTAGCCTGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48852334 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
48852374 TGCCTTCAGGTCTTAGCCCAGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48852414 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48852454 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48852494 TGCCTTCGGATCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
48852534 TGCCTTC
1 TGCCTTC
48852541 AATGGCTATT
Statistics
Matches: 421, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.00
40 418 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:48859825 original size:38 final size:40
Alignment explanation
Indices: 48859491--48860004 Score: 777
Period size: 40 Copynumber: 13.2 Consensus size: 40
48859481 CAAGCTCAAT
* * * * *
48859491 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48859531 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
48859571 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
48859611 CGCCGTCGGGTCTTAG-CCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
48859650 TGCCTTCGGGTCTTATCCCGGATATATCAATTC-CAAAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
48859689 TGCCTTCGGGTCTTAGCCCGGATATAT-GATTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48859728 TG-CTT-AGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48859766 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCA-AAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
48859805 TGCCTTC-GGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
48859844 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
48859884 TGCCTTCGGGTCTTAGCCCGG--ATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
48859922 TGCCTTCGGGTCTTA-TCC-GATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
48859960 TGCCTTC-GGTCTTAGCCC-GATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
48859998 TGCCTTC
1 TGCCTTC
48860005 AATGGCTATT
Statistics
Matches: 439, Mismatches: 23, Indels: 26
0.90 0.05 0.05
Matches are distributed among these distances:
36 1 0.00
37 28 0.06
38 132 0.30
39 98 0.22
40 179 0.41
41 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:48859846 original size:78 final size:80
Alignment explanation
Indices: 48859491--48860004 Score: 777
Period size: 78 Copynumber: 6.6 Consensus size: 80
48859481 CAAGCTCAAT
* * * * *
48859491 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
*
48859556 ATCAACTT-GCACAAT
66 ATCAA-TTCGCACAAA
* *
48859571 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAACGCCGTCGGGTCTTAG-CCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
*
48859635 ATCAGTTCGCACAAA
66 ATCAATTCGCACAAA
* *
48859650 TGCCTTCGGGTCTTATCCCGGATATATCAATTC-CAAAAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
* *
48859714 AT-GATTCACACAAA
66 ATCAATTCGCACAAA
* *
48859728 TG-CTT-AGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCAGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
48859791 ATCAATTCGCA-AAA
66 ATCAATTCGCACAAA
48859805 TGCCTTC-GGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
48859869 ATCAATTCGCACAAA
66 ATCAATTCGCACAAA
*
48859884 TGCCTTCGGGTCTTAGCCCGG--ATATCAATTCGCACAAATGCCTTCGGGTCTTA-TCC-GATAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
48859945 ATCAATTCGCACAAA
66 ATCAATTCGCACAAA
48859960 TGCCTTC-GGTCTTAGCCC-GATATATCAATTCGCACAAATGCCTTC
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTC
48860005 AATGGCTATT
Statistics
Matches: 400, Mismatches: 24, Indels: 24
0.89 0.05 0.05
Matches are distributed among these distances:
74 1 0.00
75 11 0.03
76 75 0.19
77 41 0.10
78 140 0.35
79 70 0.17
80 62 0.16
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
ATCAATTCGCACAAA
Found at i:48864816 original size:93 final size:93
Alignment explanation
Indices: 48864702--48864873 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
48864692 CGCCCATAAG
* * *
48864702 CGAACTCGGACCCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCG
1 CGAACTCGGACCCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48864767 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
48864795 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACCCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48864860 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
48864874 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACCCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:48864870 original size:46 final size:46
Alignment explanation
Indices: 48864695--48864870 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
48864685 TGTAATCCGC
* * * *
48864695 CCATAAGCGAACTCGGACCCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
48864741 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
48864791 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
48864834 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
48864871 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:48864889 original size:46 final size:46
Alignment explanation
Indices: 48864744--48864882 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
48864734 TTCGCATCCA
*
48864744 TAAGTGAACTCGGACTCAACTCGACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
48864792 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
48864837 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
48864883 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 29 0.39
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:48875259 original size:36 final size:36
Alignment explanation
Indices: 48875217--48875291 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
48875207 TTAACTTATT
48875217 TAATCTCATATTCAATCAAATTTATCCAAAAACACA
1 TAATCTCATATTCAATCAAATTTATCCAAAAACACA
*
48875253 TAATCTCATATTCAATCAAATTTATTCAAAAACACA
1 TAATCTCATATTCAATCAAATTTATCCAAAAACACA
48875289 TAA
1 TAA
48875292 ATGGGCTAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (36 bp):
TAATCTCATATTCAATCAAATTTATCCAAAAACACA
Found at i:48882307 original size:28 final size:28
Alignment explanation
Indices: 48882267--48882373 Score: 112
Period size: 27 Copynumber: 3.9 Consensus size: 28
48882257 GGAGGAAGCG
* *
48882267 TTCTGGAGGCTATGCCACAAATACCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
48882295 TTCTGGTGGCTATGCCAGAAATATCT-A
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
48882322 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* * * *
48882349 ATCTGGTGACTCTGTCAC-AATATCT
1 TTCTGGTGGCTATGCCACAAATATCT
48882374 ATTCTGGAAG
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.10
27 38 0.56
28 23 0.34
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:48887910 original size:11 final size:11
Alignment explanation
Indices: 48887894--48887919 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
48887884 CGAAGCCTAC
48887894 ATCACAATAAT
1 ATCACAATAAT
48887905 ATCACAATAAT
1 ATCACAATAAT
48887916 ATCA
1 ATCA
48887920 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:48888412 original size:27 final size:27
Alignment explanation
Indices: 48888380--48888493 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
48888370 AAAAACAGTC
48888380 ATTTTACACTACAGGGGTATTTCAATA
1 ATTTTACACTACAGGGGTATTTCAATA
48888407 ATTTT--ACTACAGGGGTATTTCAATA
1 ATTTTACACTACAGGGGTATTTCAATA
* *
48888432 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAGGGGTATTTCAATA
* * * *
48888459 ATTTTACA-AATCGGGGGTGTTTCAGTA
1 ATTTTACACTA-CAGGGGTATTTCAATA
48888486 ATTTTACA
1 ATTTTACA
48888494 AACCGAGGGT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
25 25 0.33
26 1 0.01
27 50 0.66
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAGGGGTATTTCAATA
Found at i:48888442 original size:52 final size:54
Alignment explanation
Indices: 48888380--48888493 Score: 160
Period size: 52 Copynumber: 2.1 Consensus size: 54
48888370 AAAAACAGTC
* *
48888380 ATTTTACACTACAGGGGTATTTCAATAATTTTAC-TA-CAGGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATTTCAATAATTTTACAAATCAGGGGTATTTCAATA
* * * *
48888432 ATTTTACACTACAAGGGTATTTCGATAATTTTACAAATCGGGGGTGTTTCAGTA
1 ATTTTACACTACAAGGGTATTTCAATAATTTTACAAATCAGGGGTATTTCAATA
48888486 ATTTTACA
1 ATTTTACA
48888494 AACCGAGGGT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
52 32 0.59
53 1 0.02
54 21 0.39
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.39
Consensus pattern (54 bp):
ATTTTACACTACAAGGGTATTTCAATAATTTTACAAATCAGGGGTATTTCAATA
Found at i:48888494 original size:27 final size:27
Alignment explanation
Indices: 48888446--48888624 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
48888436 TACACTACAA
*
48888446 GGGTATTTCGATAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGG
* * * *
48888473 GGGTGTTTCAGTAATTTTACAAACCGA
1 GGGTATTTCGGTAATTTTACAAATCGG
* * * * *
48888500 GGGTATTTTGATAATTTTATAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGG
48888527 GGGTACTTT-GGTAATTTTACAAA-CTGG
1 GGGTA-TTTCGGTAATTTTACAAATC-GG
* *
48888554 GGGTATTTCGATAATTTTACAAATTGG
1 GGGTATTTCGGTAATTTTACAAATCGG
* * *
48888581 GGGTACTTCGGTAATTTTACAAACCAG
1 GGGTATTTCGGTAATTTTACAAATCGG
48888608 GGGTATTTCGGTAATTT
1 GGGTATTTCGGTAATTT
48888625 CTCTTTATTA
Statistics
Matches: 124, Mismatches: 24, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
26 3 0.02
27 118 0.95
28 3 0.02
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGG
Found at i:48888503 original size:54 final size:54
Alignment explanation
Indices: 48888394--48888624 Score: 238
Period size: 54 Copynumber: 4.3 Consensus size: 54
48888384 TACACTACAG
* * * * * *
48888394 GGGTATTTCAATAATTTTAC-TA-CAGGGGTATTTCAATAATTTTACACTA-CAA
1 GGGTATTTCGATAATTTTACAAATCGGGGGTATTTCAGTAATTTTACA-AACCGA
*
48888446 GGGTATTTCGATAATTTTACAAATCGGGGGTGTTTCAGTAATTTTACAAACCGA
1 GGGTATTTCGATAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAAACCGA
* * * * * * *
48888500 GGGTATTTTGATAATTTTATAAATTGAGGGTACTTT-GGTAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAAATCGGGGGTA-TTTCAGTAATTTTACAAACCGA
* * *
48888554 GGGTATTTCGATAATTTTACAAATTGGGGGTACTTCGGTAATTTTACAAACC-A
1 GGGTATTTCGATAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAAACCGA
*
48888607 GGGGTATTTCGGTAATTT
1 -GGGTATTTCGATAATTT
48888625 CTCTTTATTA
Statistics
Matches: 151, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
52 19 0.13
53 4 0.03
54 125 0.83
55 3 0.02
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTCGATAATTTTACAAATCGGGGGTATTTCAGTAATTTTACAAACCGA
Found at i:48888612 original size:81 final size:81
Alignment explanation
Indices: 48888393--48888624 Score: 217
Period size: 81 Copynumber: 2.9 Consensus size: 81
48888383 TTACACTACA
* * * * * *
48888393 GGGGTATTTCAATAATTTTAC-TACAG-GGGTATTTCAATAATTTTACACTACA-AGGGTATTTC
1 GGGGTATTTCAGTAATTTTACAAACCGAGGGTACTTCGATAATTTTACA-AACAGAGGGTATTTC
*
48888455 GATAATTTTACAAATCG
65 GGTAATTTTACAAATCG
* * * * **
48888472 GGGGTGTTTCAGTAATTTTACAAACCGAGGGTATTTTGATAATTTTATAAATTGAGGGTACTTT-
1 GGGGTATTTCAGTAATTTTACAAACCGAGGGTACTTCGATAATTTTACAAACAGAGGGTA-TTTC
48888536 GGTAATTTTACAAA-CTG
65 GGTAATTTTACAAATC-G
** * *
48888553 GGGGTATTTC-GATAATTTTACAAATTGGGGGTACTTCGGTAATTTTACAAACCAG-GGGTATTT
1 GGGGTATTTCAG-TAATTTTACAAACCGAGGGTACTTCGATAATTTTACAAA-CAGAGGGTATTT
48888616 CGGTAATTT
64 CGGTAATTT
48888625 CTCTTTATTA
Statistics
Matches: 124, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
79 19 0.15
80 9 0.07
81 92 0.74
82 4 0.03
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (81 bp):
GGGGTATTTCAGTAATTTTACAAACCGAGGGTACTTCGATAATTTTACAAACAGAGGGTATTTCG
GTAATTTTACAAATCG
Found at i:48888978 original size:28 final size:28
Alignment explanation
Indices: 48888941--48889004 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
48888931 TGGCCCCTTT
*
48888941 AGGCCCAATCTA-GTTCACATGGCCCATC
1 AGGCCCAATC-ACATTCACATGGCCCATC
*
48888969 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
48888997 AGGCCCAA
1 AGGCCCAA
48889005 CTACTTCCCG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 32 0.97
ACGTcount: A:0.28, C:0.36, G:0.17, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:48895773 original size:47 final size:47
Alignment explanation
Indices: 48895719--48896241 Score: 875
Period size: 47 Copynumber: 11.1 Consensus size: 47
48895709 GAAATGATAG
48895719 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48895766 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48895813 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
48895862 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
48895909 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48895956 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48896003 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
48896050 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48896097 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48896144 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
48896191 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48896238 TAAG
1 TAAG
48896242 TCCCGAAGGG
Statistics
Matches: 455, Mismatches: 19, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 408 0.90
49 47 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:48896416 original size:37 final size:37
Alignment explanation
Indices: 48896360--48896438 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
48896350 CCGAGCTCTA
* *
48896360 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
48896397 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
48896434 AAGAC
1 AAGAC
48896439 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:48901125 original size:3 final size:3
Alignment explanation
Indices: 48901117--48901146 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
48901107 CAGAGTTGTG
48901117 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
48901147 TTGCTATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:48903222 original size:25 final size:25
Alignment explanation
Indices: 48903194--48903278 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 25
48903184 ATGATTTCCT
48903194 TGCCTTATAGAACTTATCAATGCCA
1 TGCCTTATAGAACTTATCAATGCCA
** * *
48903219 TGCCTTGGCAT-GGTCTTA-CATGATTTCCT
1 TGCCTT---ATAGAACTTATCA--A-TGCCA
48903248 TGCCTTATAGAACTTATCAATGCCA
1 TGCCTTATAGAACTTATCAATGCCA
48903273 TGCCTT
1 TGCCTT
48903279 GGCATGGTCT
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
25 15 0.34
26 5 0.11
27 10 0.23
28 5 0.11
29 9 0.20
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (25 bp):
TGCCTTATAGAACTTATCAATGCCA
Found at i:48903231 original size:54 final size:54
Alignment explanation
Indices: 48903041--48903302 Score: 341
Period size: 54 Copynumber: 4.9 Consensus size: 54
48903031 TTTCCTTTTT
* * * * * *
48903041 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* ** *
48903095 -AACTCA-CAAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTACCTTATA
1 GAACTTATC-AATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATA
* * * *
48903148 TTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 -GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
*
48903203 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
48903257 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
48903303 CTCTTACCAA
Statistics
Matches: 184, Mismatches: 18, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
52 3 0.02
53 41 0.22
54 96 0.52
55 41 0.22
56 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
Found at i:48904161 original size:30 final size:30
Alignment explanation
Indices: 48904115--48904171 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
48904105 TCCCTAACAC
*
48904115 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACCTTTGAAAAATTACAATTTTGCCCCT
* **
48904145 AAACCTTTGCAAAATTATGATTTTGCC
1 AAACCTTTGAAAAATTACAATTTTGCC
48904172 TCTAGTCTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (30 bp):
AAACCTTTGAAAAATTACAATTTTGCCCCT
Found at i:48911879 original size:43 final size:42
Alignment explanation
Indices: 48911843--48911940 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
48911833 TCTTACCTGT
*
48911843 AATCACATATCGATG-CCACTGTCCCAGACAGGGTCTTACACG
1 AATCACATATCGATGTCCA-TGTCCCAAACAGGGTCTTACACG
* * *
48911885 AACTCATATAT-GATGTCGATGTCCCAAACATGGTCTTACACG
1 AA-TCACATATCGATGTCCATGTCCCAAACAGGGTCTTACACG
48911927 AAATCACATATCGA
1 -AATCACATATCGA
48911941 AATCCTATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
42 34 0.72
43 13 0.28
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (42 bp):
AATCACATATCGATGTCCATGTCCCAAACAGGGTCTTACACG
Found at i:48914201 original size:21 final size:20
Alignment explanation
Indices: 48914173--48914212 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
48914163 CAAAACTTAT
48914173 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
48914193 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
48914213 AAAGATCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:48920281 original size:42 final size:43
Alignment explanation
Indices: 48920205--48920286 Score: 139
Period size: 42 Copynumber: 1.9 Consensus size: 43
48920195 CTAGGGAAAA
48920205 TTATGTGATCTAAACTCATTGAGTTGTGGTCTGAGTTCATGAT
1 TTATGTGATCTAAACTCATTGAGTTGTGGTCTGAGTTCATGAT
* *
48920248 TTATGTGATTTGAACTCA-TGAGTTGTGGTCTGAGTTCAT
1 TTATGTGATCTAAACTCATTGAGTTGTGGTCTGAGTTCAT
48920287 CATTATGAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
42 21 0.57
43 16 0.43
ACGTcount: A:0.22, C:0.11, G:0.24, T:0.43
Consensus pattern (43 bp):
TTATGTGATCTAAACTCATTGAGTTGTGGTCTGAGTTCATGAT
Found at i:48920286 original size:20 final size:20
Alignment explanation
Indices: 48920224--48920286 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
48920214 CTAAACTCAT
48920224 TGAGTTGTGGTCTGAGTTCA
1 TGAGTTGTGGTCTGAGTTCA
* * * **
48920244 TGATTTATGTGATTTGAACTCA
1 TGA-GT-TGTGGTCTGAGTTCA
48920266 TGAGTTGTGGTCTGAGTTCA
1 TGAGTTGTGGTCTGAGTTCA
48920286 T
1 T
48920287 CATTATGAGA
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
20 15 0.48
21 2 0.06
22 14 0.45
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.43
Consensus pattern (20 bp):
TGAGTTGTGGTCTGAGTTCA
Found at i:48922477 original size:75 final size:75
Alignment explanation
Indices: 48922378--48922651 Score: 388
Period size: 75 Copynumber: 3.6 Consensus size: 75
48922368 TGTAACACAG
*
48922378 TTTTGTTCATAGAAGAAATTCAAGAATAAGGCATGCCCACGCCTTATTATTGCTGAACATCAGGA
1 TTTTGTTCACAGAAGAAATTCAAGAATAAGGCATGCCCACGCCTTATTATTGCTGAACATCAGGA
48922443 AGTACAACAT
66 AGTACAACAT
* * *
48922453 TTTTGTTCACAGAAAAAATTCAAGATTAAGGCATGCCCACGCCTTATTATTGCTGAACATTAGGA
1 TTTTGTTCACAGAAGAAATTCAAGAATAAGGCATGCCCACGCCTTATTATTGCTGAACATCAGGA
48922518 AGTACAACATT
66 AGTACAACA-T
* * **
48922529 TTTTTTTCACAGAAGAAATTCAAGATTAAGGCATGCCCACGCCTTATTATTG-TAGAACATCAAT
1 TTTTGTTCACAGAAGAAATTCAAGAATAAGGCATGCCCACGCCTTATTATTGCT-GAACATCAGG
48922593 AAGTACAACAT
65 AAGTACAACAT
* * * * * * *
48922604 TTTTATTCACAGAAGAAACTCTAGAACAAGGCGTGCCTACGGCTTATT
1 TTTTGTTCACAGAAGAAATTCAAGAATAAGGCATGCCCACGCCTTATT
48922652 CTTAAACTTC
Statistics
Matches: 180, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
75 112 0.62
76 68 0.38
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (75 bp):
TTTTGTTCACAGAAGAAATTCAAGAATAAGGCATGCCCACGCCTTATTATTGCTGAACATCAGGA
AGTACAACAT
Found at i:48922578 original size:76 final size:75
Alignment explanation
Indices: 48922378--48922621 Score: 391
Period size: 75 Copynumber: 3.2 Consensus size: 75
48922368 TGTAACACAG
* *
48922378 TTTTGTTCATAGAAGAAATTCAAGAATAAGGCATGCCCACGCCTTATTATTGCTGAACATCAGGA
1 TTTTGTTCACAGAAGAAATTCAAGATTAAGGCATGCCCACGCCTTATTATTGCTGAACATCAGGA
48922443 AGTACAACAT
66 AGTACAACAT
* *
48922453 TTTTGTTCACAGAAAAAATTCAAGATTAAGGCATGCCCACGCCTTATTATTGCTGAACATTAGGA
1 TTTTGTTCACAGAAGAAATTCAAGATTAAGGCATGCCCACGCCTTATTATTGCTGAACATCAGGA
48922518 AGTACAACATT
66 AGTACAACA-T
* **
48922529 TTTTTTTCACAGAAGAAATTCAAGATTAAGGCATGCCCACGCCTTATTATTG-TAGAACATCAAT
1 TTTTGTTCACAGAAGAAATTCAAGATTAAGGCATGCCCACGCCTTATTATTGCT-GAACATCAGG
48922593 AAGTACAACAT
65 AAGTACAACAT
*
48922604 TTTTATTCACAGAAGAAA
1 TTTTGTTCACAGAAGAAA
48922622 CTCTAGAACA
Statistics
Matches: 157, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
75 89 0.57
76 68 0.43
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (75 bp):
TTTTGTTCACAGAAGAAATTCAAGATTAAGGCATGCCCACGCCTTATTATTGCTGAACATCAGGA
AGTACAACAT
Found at i:48923304 original size:17 final size:17
Alignment explanation
Indices: 48923273--48923305 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
48923263 GTATTACAAC
48923273 ACATATTAAAGCTACTT
1 ACATATTAAAGCTACTT
48923290 ACATCATTAAA-CTACT
1 ACAT-ATTAAAGCTACT
48923306 CATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.42, C:0.21, G:0.03, T:0.33
Consensus pattern (17 bp):
ACATATTAAAGCTACTT
Done.