Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 152 of 349
Found at i:48923818 original size:29 final size:29
Alignment explanation
Indices: 48923770--48923837 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
48923760 CTTTAAAAAC
* *
48923770 ACATTAAAACATGCCCAACACATGCCAAA
1 ACATTAAACCACGCCCAACACATGCCAAA
*
48923799 ACATTAAACCACGCCTAACACATGCCAAA
1 ACATTAAACCACGCCCAACACATGCCAAA
*
48923828 ACATTCAACC
1 ACATTAAACC
48923838 TAAGTGCCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.46, C:0.34, G:0.06, T:0.15
Consensus pattern (29 bp):
ACATTAAACCACGCCCAACACATGCCAAA
Found at i:48925102 original size:20 final size:20
Alignment explanation
Indices: 48925065--48925122 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
48925055 TTTTGATGTG
* * *
48925065 TTAAAATGAGTTTAACTTGA
1 TTAAAATCATTTTCACTTGA
* * *
48925085 TTGAAATCATTTTGACTTGG
1 TTAAAATCATTTTCACTTGA
48925105 TTAAAATCATTTTCACTT
1 TTAAAATCATTTTCACTT
48925123 AATTTTGAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (20 bp):
TTAAAATCATTTTCACTTGA
Found at i:48925478 original size:11 final size:11
Alignment explanation
Indices: 48925462--48925488 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
48925452 TTTAGTTATC
48925462 ATCAAAGAATA
1 ATCAAAGAATA
48925473 ATCAAAGAATA
1 ATCAAAGAATA
48925484 ATCAA
1 ATCAA
48925489 TCAATTTACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.11, G:0.07, T:0.19
Consensus pattern (11 bp):
ATCAAAGAATA
Found at i:48929746 original size:43 final size:43
Alignment explanation
Indices: 48929685--48929843 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
48929675 CAATACGATA
* * * *
48929685 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAATG
* * * *
48929728 TCCCAGATAGGGTCTTACACGAAATCGA-ATAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATC-ACATATCGATGCCAATG
* * *
48929771 TCCCAGACATGGTCTTACACATAATCACA-ATACAATGTCAATG
1 TCCCAGACATGGTCTTACACGTAATCACATAT-CGATGCCAATG
* *
48929814 TCCCAAACATGGTCTTACATGTAATCACAT
1 TCCCAGACATGGTCTTACACGTAATCACAT
48929844 CTCGGTAATC
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 2 0.02
43 93 0.97
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAATG
Found at i:48931194 original size:22 final size:22
Alignment explanation
Indices: 48931166--48931208 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
48931156 CACTAAGTCA
* *
48931166 ACAGGACGGCTCAATGCCGTAG
1 ACAGGACGGCTAAAGGCCGTAG
48931188 ACAGGACGGCTAAAGGCCGTA
1 ACAGGACGGCTAAAGGCCGTA
48931209 AATATCGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.26, G:0.33, T:0.12
Consensus pattern (22 bp):
ACAGGACGGCTAAAGGCCGTAG
Found at i:48931484 original size:27 final size:27
Alignment explanation
Indices: 48931454--48931519 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
48931444 CATTCTACCA
*
48931454 TACAAAGGTATTACACTCATTTTACAC
1 TACAAGGGTATTACACTCATTTTACAC
* **
48931481 TACAAGGGCATTACGGTCATTTTACAC
1 TACAAGGGTATTACACTCATTTTACAC
48931508 TACAAGGGTATT
1 TACAAGGGTATT
48931520 CCAATAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (27 bp):
TACAAGGGTATTACACTCATTTTACAC
Found at i:48931529 original size:27 final size:27
Alignment explanation
Indices: 48931454--48931532 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
48931444 CATTCTACCA
* *
48931454 TACAAAGGTATTACACTCATTTTACAC
1 TACAAGGGTATTACAATCATTTTACAC
* **
48931481 TACAAGGGCATTACGGTCATTTTACAC
1 TACAAGGGTATTACAATCATTTTACAC
* *
48931508 TACAAGGGTATTCCAATAATTTTAC
1 TACAAGGGTATTACAATCATTTTAC
48931533 CAATATTGGG
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (27 bp):
TACAAGGGTATTACAATCATTTTACAC
Found at i:48932419 original size:27 final size:26
Alignment explanation
Indices: 48932378--48932564 Score: 140
Period size: 27 Copynumber: 6.9 Consensus size: 26
48932368 AAACATACAT
*
48932378 CACATAGGGGCAAAAATGTCATTTTGA
1 CACATAAGGG-AAAAATGTCATTTTGA
*** * *
48932405 CACATAAGGGTAAAACCATCAATTTAA
1 CACATAAGGG-AAAAATGTCATTTTGA
* * *
48932432 CGCATAAAGGAAAAATAGTCATTTTGT
1 CACATAAGGGAAAAAT-GTCATTTTGA
* * * *
48932459 CACATAAGGGCAAAATCATCAATTTAA
1 CACATAAGGGAAAAAT-GTCATTTTGA
* * *
48932486 CAAATAAGGGCAAAATAGTCATTTTGC
1 CACATAAGGGAAAAAT-GTCATTTTGA
* *
48932513 CACATAAGGGCAAAACTGTCATTTTGC
1 CACATAAGGG-AAAAATGTCATTTTGA
*
48932540 CACATAAGGGCAAAACTGTCATTTT
1 CACATAAGGG-AAAAATGTCATTTT
48932565 ACCCTACAGG
Statistics
Matches: 126, Mismatches: 32, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
26 4 0.03
27 118 0.94
28 4 0.03
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (26 bp):
CACATAAGGGAAAAATGTCATTTTGA
Found at i:48932470 original size:81 final size:81
Alignment explanation
Indices: 48932377--48932565 Score: 195
Period size: 81 Copynumber: 2.3 Consensus size: 81
48932367 TAAACATACA
* * * * *
48932377 TCACATAGGGGCAAAAATGTCATTTTGACACATAAGGGTAAAACCA-TCAATTTAACGCATAAAG
1 TCACATAAGGGCAAAAATGTCATTTTAACAAATAAGGGCAAAA-CAGTCAATTTAACACATAAAG
48932441 G-AAAAATAGTCATTTTG
65 GCAAAAAT-GTCATTTTG
* * * * ** *
48932458 TCACATAAGGGC-AAAATCATCAATTTAACAAATAAGGGCAAAATAGTCATTTTGCCACATAAGG
1 TCACATAAGGGCAAAAAT-GTCATTTTAACAAATAAGGGCAAAACAGTCAATTTAACACATAAAG
*
48932522 GCAAAACTGTCATTTTG
65 GCAAAAATGTCATTTTG
* *
48932539 CCACATAAGGGCAAAACTGTCATTTTA
1 TCACATAAGGGCAAAAATGTCATTTTA
48932566 CCCTACAGGG
Statistics
Matches: 87, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
80 6 0.07
81 72 0.83
82 9 0.10
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (81 bp):
TCACATAAGGGCAAAAATGTCATTTTAACAAATAAGGGCAAAACAGTCAATTTAACACATAAAGG
CAAAAATGTCATTTTG
Found at i:48932547 original size:54 final size:54
Alignment explanation
Indices: 48932378--48932564 Score: 209
Period size: 54 Copynumber: 3.5 Consensus size: 54
48932368 AAACATACAT
* * *
48932378 CACATAGGGGCAAAA-ATGTCATTTTGACACATAAGGGTAAAACCATCAATTTAA
1 CACATAAGGGCAAAATA-GTCATTTTGACACATAAGGGCAAAACTATCAATTTAA
* * * *
48932432 CGCATAAAGGAAAAATAGTCATTTTGTCACATAAGGGCAAAA-TCATCAATTTAA
1 CACATAAGGGCAAAATAGTCATTTTGACACATAAGGGCAAAACT-ATCAATTTAA
* * * * **
48932486 CAAATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAACTGTCATTTTGC
1 CACATAAGGGCAAAATAGTCATTTTGACACATAAGGGCAAAACTATCAATTTAA
48932540 CACATAAGGGCAAAACT-GTCATTTT
1 CACATAAGGGCAAAA-TAGTCATTTT
48932565 ACCCTACAGG
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
54 109 0.97
55 3 0.03
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (54 bp):
CACATAAGGGCAAAATAGTCATTTTGACACATAAGGGCAAAACTATCAATTTAA
Found at i:48933538 original size:37 final size:37
Alignment explanation
Indices: 48933488--48933566 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 37
48933478 ACAATCGACC
*
48933488 ATTGTTAGAGCCTAAATTCCTTAGGAATCATAGAAGA
1 ATTGTCAGAGCCTAAATTCCTTAGGAATCATAGAAGA
*
48933525 ATTGTCAGAGCCTAAATTCCTTAGGAATCATAGAATA
1 ATTGTCAGAGCCTAAATTCCTTAGGAATCATAGAAGA
48933562 ATTGT
1 ATTGT
48933567 TGAGTAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (37 bp):
ATTGTCAGAGCCTAAATTCCTTAGGAATCATAGAAGA
Found at i:48939396 original size:24 final size:25
Alignment explanation
Indices: 48939361--48939439 Score: 97
Period size: 24 Copynumber: 3.1 Consensus size: 25
48939351 ATATTACATT
*
48939361 ATGCTAAGTGAAATAAGACCATGGC
1 ATGCTAAGTGAAATAAGTCCATGGC
*
48939386 AT-CTAAGTGAAATAAGTCCATGAC
1 ATGCTAAGTGAAATAAGTCCATGGC
*
48939410 AATGTGCTAACTGAAATAAGTCCATGGC
1 -A--TGCTAAGTGAAATAAGTCCATGGC
48939438 AT
1 AT
48939440 TGTGCTAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
24 20 0.43
25 4 0.09
27 2 0.04
28 20 0.43
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.24
Consensus pattern (25 bp):
ATGCTAAGTGAAATAAGTCCATGGC
Found at i:48939428 original size:28 final size:28
Alignment explanation
Indices: 48939388--48939447 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
48939378 ACCATGGCAT
*
48939388 CTAAGTGAAATAAGTCCATGACAATGTG
1 CTAACTGAAATAAGTCCATGACAATGTG
* *
48939416 CTAACTGAAATAAGTCCATGGCATTGTG
1 CTAACTGAAATAAGTCCATGACAATGTG
48939444 CTAA
1 CTAA
48939448 ATGAGAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (28 bp):
CTAACTGAAATAAGTCCATGACAATGTG
Found at i:48939555 original size:51 final size:51
Alignment explanation
Indices: 48939475--48939673 Score: 301
Period size: 51 Copynumber: 3.9 Consensus size: 51
48939465 TGAACCTTAG
*
48939475 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGTCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * * * * *
48939526 AAATATAATATCTTTGGACACAAGAGTGGTACTATGTCAAAGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
48939577 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
48939628 GAATAAAATAACTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
48939674 CGTGTATCCT
Statistics
Matches: 132, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
50 1 0.01
51 131 0.99
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:48953229 original size:20 final size:21
Alignment explanation
Indices: 48953197--48953242 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
48953187 CCATGTTGAT
*
48953197 TTTGTTCTTTGGCCCATTTTC
1 TTTGTTCTTTGGCACATTTTC
48953218 TTTGTT-TTTGGCACA-TTTC
1 TTTGTTCTTTGGCACATTTTC
48953237 -TTGTTC
1 TTTGTTC
48953243 CTTTCGCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 5 0.22
19 4 0.17
20 8 0.35
21 6 0.26
ACGTcount: A:0.07, C:0.20, G:0.15, T:0.59
Consensus pattern (21 bp):
TTTGTTCTTTGGCACATTTTC
Found at i:48963114 original size:50 final size:49
Alignment explanation
Indices: 48963022--48963199 Score: 175
Period size: 50 Copynumber: 3.6 Consensus size: 49
48963012 GACGCCACGT
* * *
48963022 CCAAGACATGGTCTTACACTG--GCTCATACATCAAAGTCGATGCCATGTC
1 CCAA-ACATGGTCTTACACTGACTCTCATATATCAAACT-GATGCCATGTC
48963071 CCAAACATGGTCTTACACTGACTCTCATATATCAAAACTGATGCCATGTC
1 CCAAACATGGTCTTACACTGACTCTCATATATC-AAACTGATGCCATGTC
* * ** *
48963121 CCAAACATGGTCTTACACT-AGCTTTCA-AGTCTCGAGGCCGATGCCATGTC
1 CCAAACATGGTCTTACACTGA-CTCTCATA-TATC-AAACTGATGCCATGTC
* * *
48963171 CCAGACATGGTCTTACATTGGCTCTCATA
1 CCAAACATGGTCTTACACTGACTCTCATA
48963200 ATGTGGCCGA
Statistics
Matches: 109, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
48 16 0.15
49 6 0.06
50 82 0.75
51 5 0.05
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (49 bp):
CCAAACATGGTCTTACACTGACTCTCATATATCAAACTGATGCCATGTC
Found at i:48967547 original size:45 final size:45
Alignment explanation
Indices: 48967413--48967584 Score: 165
Period size: 45 Copynumber: 3.9 Consensus size: 45
48967403 TTTTCTAAAA
* ** * * *
48967413 TCACCGGCATT-TCGCCTGCTAGGATC-GAGGCCCGATTA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGT-ATC
* * *
48967456 TCATCGGCATTATAGCCTG-TTGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGC-CCAAAGGCCCGAATAGTATC
*
48967500 TCACCGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGTATC
* * * *
48967545 TCACCGGCATAATAGCCTGCTAGACTCAAAGGCCTGAATA
1 TCACCGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATA
48967585 TAATACCAGC
Statistics
Matches: 106, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
43 13 0.12
44 38 0.36
45 55 0.52
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGTATC
Found at i:48967804 original size:38 final size:38
Alignment explanation
Indices: 48967582--48967785 Score: 275
Period size: 38 Copynumber: 5.4 Consensus size: 38
48967572 AAAGGCCTGA
* * * * *
48967582 ATATAATACCAGCACTAGGCTTGCGGGATTTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGG
* * *
48967620 ATATAATACCAGCACGAAACCTGCAGGATTTAACTCGG
1 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGG
*
48967658 ATATATTACCAGCACGAAGCCTGCAGGAATTAACCCGG
1 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGG
* * *
48967696 ATATATTACCAGCATGAAGCCTGCGGGATTTAACCCCG
1 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGG
*
48967734 ATATATTACCAGCACGAAGCCTGCAGGATTTAACTCGG
1 ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGG
48967772 ATATAATT-CCAGCA
1 ATAT-ATTACCAGCA
48967786 TATAGCCTGC
Statistics
Matches: 147, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 144 0.98
39 3 0.02
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.23
Consensus pattern (38 bp):
ATATATTACCAGCACGAAGCCTGCAGGATTTAACCCGG
Found at i:48967811 original size:38 final size:36
Alignment explanation
Indices: 48967582--48967812 Score: 212
Period size: 38 Copynumber: 6.1 Consensus size: 36
48967572 AAAGGCCTGA
* * *
48967582 ATATAATACCAGCACTAGGCTTGCGGGATTTAACCCGG
1 ATATATTACCAGCA-TAAGCCTGC-GGATTTAACCCGG
* * * *
48967620 ATATAATACCAGCACGAAACCTGCAGGATTTAACTCGG
1 ATATATTACCAGCA-TAAGCCTGC-GGATTTAACCCGG
* *
48967658 ATATATTACCAGCACGAAGCCTGCAGGAATTAACCCGG
1 ATATATTACCAGCA-TAAGCCTGC-GGATTTAACCCGG
*
48967696 ATATATTACCAGCATGAAGCCTGCGGGATTTAACCCCG
1 ATATATTACCAGCAT-AAGCCTGC-GGATTTAACCCGG
* *
48967734 ATATATTACCAGCACGAAGCCTGCAGGATTTAACTCGG
1 ATATATTACCAGCA-TAAGCCTGC-GGATTTAACCCGG
* *
48967772 ATATAATT-CCAGCATATAGCCTGCGGTCTTTAAGCCGG
1 ATAT-ATTACCAGCATA-AGCCTGCGG-ATTTAACCCGG
48967810 ATA
1 ATA
48967813 CAAATATCAT
Statistics
Matches: 166, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
37 3 0.02
38 160 0.96
39 3 0.02
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (36 bp):
ATATATTACCAGCATAAGCCTGCGGATTTAACCCGG
Found at i:48968190 original size:43 final size:46
Alignment explanation
Indices: 48968082--48968192 Score: 149
Period size: 45 Copynumber: 2.5 Consensus size: 46
48968072 ACATAACATT
* * *
48968082 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTACTAAGCTCAAAGGCCCGAATAA
*
48968128 T-ATTTCACCGGCATCATAGCCTACTAAGCTCAAA-GCCCG-AT-A
1 TCATTTCACCGGCATTATAGCCTACTAAGCTCAAAGGCCCGAATAA
*
48968170 TCATTTCACCAGCATTATAGCCT
1 TCATTTCACCGGCATTATAGCCT
48968193 GCTAGGCCTG
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 2 0.03
43 21 0.36
44 4 0.07
45 30 0.52
46 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (46 bp):
TCATTTCACCGGCATTATAGCCTACTAAGCTCAAAGGCCCGAATAA
Found at i:48968207 original size:43 final size:44
Alignment explanation
Indices: 48968082--48968216 Score: 168
Period size: 43 Copynumber: 3.1 Consensus size: 44
48968072 ACATAACATT
*
48968082 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAAT-A
* * *
48968128 T-ATTTCACCGGCATCATAGCCTACTAAGCTCAAAGCCCG-ATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
* *
48968170 TCATTTCACCAGCATTATAGCCTGCTAGGC-CTGAAGCCCGAATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTC-AAAGCCCGAATA
48968214 TCA
1 TCA
48968217 CATTTCAATA
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
42 3 0.04
43 33 0.43
44 10 0.13
45 30 0.39
46 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (44 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATA
Found at i:48973505 original size:51 final size:51
Alignment explanation
Indices: 48973450--48973549 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
48973440 AGATATGTGG
* * *
48973450 CATCCGAGCTCGTTGAGAGGTCTGAGTTCATGGTGGATGTGATT-CATGTAA
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATGATGGATGTG-TTACATGTAA
*
48973501 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGTGTTACATGT
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATGATGGATGTGTTACATGT
48973550 TATGTCGTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 2 0.05
51 42 0.95
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (51 bp):
CATCCGAGCTCATTGAGAGGTCCGAGTTCATGATGGATGTGTTACATGTAA
Found at i:48981790 original size:40 final size:40
Alignment explanation
Indices: 48981735--48981991 Score: 376
Period size: 40 Copynumber: 6.4 Consensus size: 40
48981725 AAACCAAGTA
* *
48981735 CCTTCGGGACTTAGCCCGG-ATATAGT-AGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTCA-CTAGCACAAATG
* *
48981775 CCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAATG
* * *
48981815 CCTTCGGGATTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
** *
48981855 CCTTCACGACTTAGCCCGGAATTAGTCACTAGCACAAATT
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
48981895 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
48981935 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
48981975 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
48981992 CGTTATCATC
Statistics
Matches: 204, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
40 201 0.99
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
Found at i:48983414 original size:85 final size:85
Alignment explanation
Indices: 48983271--48983449 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
48983261 GGCGGGCCAT
48983271 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
48983336 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
48983356 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
48983421 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
48983441 GGGCATGGG
1 GAGCATGGG
48983450 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:48984769 original size:47 final size:47
Alignment explanation
Indices: 48984715--48984825 Score: 222
Period size: 47 Copynumber: 2.4 Consensus size: 47
48984705 TATTTGAATA
48984715 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
48984762 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
48984809 AATGTGAAAGTGTATAT
1 AATGTGAAAGTGTATAT
48984826 GTGAAAGTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
Found at i:48984825 original size:94 final size:94
Alignment explanation
Indices: 48984715--48985370 Score: 845
Period size: 94 Copynumber: 6.8 Consensus size: 94
48984705 TATTTGAATA
* * *
48984715 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
48984780 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 TGTGATAAGGCCGAATGGCC---------AATGTG--A-TG
* * *
48984821 TATATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
1 -A-ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
48984886 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
48984917 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
48984982 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
48985013 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
48985077 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
48985109 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
48985172 TGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
48985203 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
48985266 TATGAGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
48985297 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
48985362 TGTGATAAG
66 TGTGATAAG
48985371 TCCCGAAGGG
Statistics
Matches: 516, Mismatches: 26, Indels: 27
0.91 0.05 0.05
Matches are distributed among these distances:
93 2 0.00
94 240 0.47
95 1 0.00
96 181 0.35
97 3 0.01
99 5 0.01
107 1 0.00
108 83 0.16
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:48984837 original size:61 final size:61
Alignment explanation
Indices: 48984763--48984886 Score: 248
Period size: 61 Copynumber: 2.0 Consensus size: 61
48984753 GATGTGATGA
48984763 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
48984824 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
48984885 AT
1 AT
48984887 ATGTGATAAG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (61 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:48984845 original size:16 final size:14
Alignment explanation
Indices: 48984810--48984839 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
48984800 GATGTGATGA
48984810 ATGTGAAAGTGTAT
1 ATGTGAAAGTGTAT
48984824 ATGTGAAAGTGTAT
1 ATGTGAAAGTGTAT
48984838 AT
1 AT
48984840 ATGTGATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (14 bp):
ATGTGAAAGTGTAT
Found at i:48984893 original size:47 final size:47
Alignment explanation
Indices: 48984824--48985370 Score: 798
Period size: 47 Copynumber: 11.6 Consensus size: 47
48984814 GAAAGTGTAT
* * *
48984824 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
48984871 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
48984918 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
48984967 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
48985014 ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
48985063 ATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
48985110 ATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
48985157 ATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
48985204 ATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
48985251 ATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
48985298 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
48985345 ATGTGGAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
48985371 TCCCGAAGGG
Statistics
Matches: 472, Mismatches: 22, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 378 0.80
49 92 0.19
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:48985237 original size:141 final size:141
Alignment explanation
Indices: 48984715--48985349 Score: 821
Period size: 141 Copynumber: 4.4 Consensus size: 141
48984705 TATTTGAATA
* * * *
48984715 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA-AGTGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTAT
* * * *
48984779 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGAA-AGTGTATATATG
65 GTGTGATAAGGCCGAATGGCC---------AATGTG--A-TG-A-ATGTGAACA-TGCATATATG
* * * *
48984843 TGATAAGGCCTAATAGCCGATGTGATG
115 AGATAAGGCCGAATGGCCAATGTGATG
* * *
48984870 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TGT
* * * * *
48984934 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGA
63 ATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCCGA
48984998 ATGGCCAATGTGATG
127 ATGGCCAATGTGATG
48985013 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
48985078 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAT
64 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAT
48985143 GGCCAATGTGATG
129 GGCCAATGTGATG
* *
48985156 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTAT
48985220 GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATG
65 GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATG
48985285 GCCAATGTGATG
130 GCCAATGTGATG
*
48985297 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
48985350 GAAGTGTATA
Statistics
Matches: 453, Mismatches: 19, Indels: 30
0.90 0.04 0.06
Matches are distributed among these distances:
140 1 0.00
141 175 0.39
143 139 0.31
144 3 0.01
145 45 0.10
146 2 0.00
148 5 0.01
155 58 0.13
157 25 0.06
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATG
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGG
CCAATGTGATG
Found at i:48985248 original size:22 final size:22
Alignment explanation
Indices: 48985221--48985342 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
48985211 CATGTGTATG
48985221 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
48985243 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
48985268 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
48985290 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
48985315 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
48985337 TGTGAT
1 TGTGAT
48985343 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:48990302 original size:55 final size:55
Alignment explanation
Indices: 48990142--48990302 Score: 204
Period size: 53 Copynumber: 3.0 Consensus size: 55
48990132 TACGTGGTAT
* * *
48990142 CCTTTTGAAACTTACC-ATTGCCATGTCTTGGCATGGTCTTACATGGTAGCCTTG
1 CCTTATGAAACTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
* * * *
48990196 CCTTATG-AACTCACCAA-TGCCATGCCTTGGAATGGTCTTACATGATTTCCTTG
1 CCTTATGAAACTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
* *
48990249 CCTTA-GAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTGCACGGTATCCTT
1 CCTTATGAAA-CTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
48990303 AAACCCTAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
53 45 0.50
54 14 0.16
55 30 0.33
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (55 bp):
CCTTATGAAACTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
Found at i:49004218 original size:37 final size:37
Alignment explanation
Indices: 49004168--49004246 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
49004158 TTATTACGAA
* *
49004168 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
49004205 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
49004242 GTCTT
1 GTCTT
49004247 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:49004443 original size:47 final size:47
Alignment explanation
Indices: 49004365--49005280 Score: 1537
Period size: 47 Copynumber: 19.4 Consensus size: 47
49004355 CCCTTCGGGA
* * * * * * *
49004365 CTTATCACATTTATGCACTTTCACATCCATCACGTTC-GCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCAC-ATCGGCTATTAGGC
* * *
49004412 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
49004459 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
49004506 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
49004553 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
49004600 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
49004647 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
49004696 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
49004743 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
49004790 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
49004837 CTTATCACACATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
49004884 CTTACCACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
49004931 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
49004978 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
49005027 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
49005074 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
49005121 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
49005168 CTTATCATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
49005215 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
49005262 CTTATCACATATATACACT
1 CTTATCACATATATACACT
49005281 GTCTTGGCTG
Statistics
Matches: 826, Mismatches: 38, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
46 2 0.00
47 732 0.89
49 92 0.11
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:49004900 original size:284 final size:282
Alignment explanation
Indices: 49004365--49005280 Score: 1609
Period size: 284 Copynumber: 3.2 Consensus size: 282
49004355 CCCTTCGGGA
** * * * * * * *
49004365 CTTATCACATTTATGCACTTTCACATCCATCACGTTC-GCCACTCGGCCCTGTCACATATATACA
1 CTTATCACACATATACACTTTCACATTCATCAC-ATCGGCCATTAGGCCTTATCACATATATACA
*
49004429 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCATAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
49004494 CGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATC
130 CGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATC
* *
49004559 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCAC
195 ACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
*
49004624 ATTCATCACATCGGCCATTAGGC
260 ATTCATCACATCGGCTATTAGGC
*
49004647 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
49004712 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
49004777 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
129 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
* *
49004842 CACACATATACACTTTCACATTCATCATATCGGCTATTAGGCCTTACCACATATATACACTTTCA
194 CACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
*
49004907 CATTCATCACATTGGCTATTAGGC
259 CATTCATCACATCGGCTATTAGGC
49004931 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
49004996 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
49005061 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGACCTTAT
129 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
*
49005126 CACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCATATATATACACTTTCA
194 CACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCA
49005191 CATTCATCACATCGGCTATTAGGC
259 CATTCATCACATCGGCTATTAGGC
49005215 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
49005280 T
66 T
49005281 GTCTTGGCTG
Statistics
Matches: 608, Mismatches: 21, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
282 65 0.11
283 2 0.00
284 541 0.89
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (282 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
CACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACA
TTCATCACATCGGCTATTAGGC
Found at i:49013068 original size:40 final size:40
Alignment explanation
Indices: 49012975--49013231 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
49012965 TGGATGATAA
* * *
49012975 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
49013015 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49013054 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49013094 CCGGGCTAAGTCCCGAAGGCCTTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49013134 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
49013174 CCGGGCTATGTCTCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
49013214 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
49013232 TACTTGGCTT
Statistics
Matches: 198, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 48 0.24
40 149 0.75
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49021378 original size:40 final size:40
Alignment explanation
Indices: 49021138--49021360 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
49021128 TGGATGATAA
* * *
49021138 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
49021178 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49021218 CCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
49021258 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
49021298 CCGGGCTAAGTCCCGAAAGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49021338 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
49021361 CGAGCAAGTA
Statistics
Matches: 167, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.01
40 166 0.99
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49027582 original size:22 final size:22
Alignment explanation
Indices: 49027548--49027661 Score: 72
Period size: 18 Copynumber: 5.5 Consensus size: 22
49027538 TTTATTTATC
49027548 TATTTA-ATATTATAT-TCAATT
1 TATTTATATATTATATCT-AATT
*
49027569 TATTTATATATTATATCTATTT
1 TATTTATATATTATATCTAATT
*
49027591 TA-TTATATA-TAT-TCTAA-A
1 TATTTATATATTATATCTAATT
49027609 TATTT-TATA-TAT-T-T--TT
1 TATTTATATATTATATCTAATT
*
49027625 ATATTTATATATTATATTTATATAT
1 -TATTTATATATTATATCTA-AT-T
49027650 TATTATATATAT
1 TATT-TATATAT
49027662 ATTTATTTAT
Statistics
Matches: 75, Mismatches: 4, Indels: 24
0.73 0.04 0.23
Matches are distributed among these distances:
17 6 0.08
18 14 0.19
19 9 0.12
20 4 0.05
21 14 0.19
22 14 0.19
23 1 0.01
24 5 0.07
25 8 0.11
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (22 bp):
TATTTATATATTATATCTAATT
Found at i:49027596 original size:14 final size:14
Alignment explanation
Indices: 49027577--49027677 Score: 68
Period size: 14 Copynumber: 7.1 Consensus size: 14
49027567 TTTATTTATA
*
49027577 TATTATATCTATTT
1 TATTATATATATTT
49027591 TATTATATATATTCT
1 TATTATATATATT-T
*
49027606 AAATATTTTATATATTTT
1 ---TATTATATATA-TTT
* *
49027624 TATATTTATATATTA
1 TAT-TATATATATTT
49027639 TATT-TATATA--T
1 TATTATATATATTT
49027650 TATTATATATATATT
1 TATTATATATAT-TT
49027665 TATT-TATAT-TTT
1 TATTATATATATTT
49027677 T
1 T
49027678 TGTATACATT
Statistics
Matches: 73, Mismatches: 4, Indels: 22
0.74 0.04 0.22
Matches are distributed among these distances:
11 4 0.05
12 9 0.12
13 7 0.10
14 18 0.25
15 14 0.19
16 8 0.11
18 11 0.15
19 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (14 bp):
TATTATATATATTT
Found at i:49027641 original size:41 final size:38
Alignment explanation
Indices: 49027548--49027673 Score: 109
Period size: 39 Copynumber: 3.2 Consensus size: 38
49027538 TTTATTTATC
* *
49027548 TATTTA-ATATTATA-TTCAATTTATTTATATATTATATCTA
1 TATTTATATATTATATTTAAATAT-TTTATATATT-T-T-TA
49027588 T-TTTAT-TATATATATTCTAAATATTTTATATATTTTTA
1 TATTTATATAT-TATATT-TAAATATTTTATATATTTTTA
* *
49027626 TATTTATATATTATATTTATATATTATTATATATATATT-
1 TATTTATATATTATATTTAAATATT-TTATATAT-TTTTA
49027665 TATTTATAT
1 TATTTATAT
49027674 TTTTTGTATA
Statistics
Matches: 74, Mismatches: 4, Indels: 17
0.78 0.04 0.18
Matches are distributed among these distances:
38 10 0.14
39 36 0.49
40 12 0.16
41 11 0.15
42 5 0.07
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (38 bp):
TATTTATATATTATATTTAAATATTTTATATATTTTTA
Found at i:49027668 original size:18 final size:18
Alignment explanation
Indices: 49027569--49027668 Score: 73
Period size: 18 Copynumber: 5.4 Consensus size: 18
49027559 ATATTCAATT
49027569 TATTTATATATTATATCTA
1 TATTTAT-TATTATATCTA
49027588 T-TTTATTATATATATTCTA
1 TATTTATTAT-TATA-TCTA
* * *
49027607 AATATT-TTATATATTTTTA
1 TAT-TTATTAT-TATATCTA
49027626 TATTTATATATTATAT-T-
1 TATTTAT-TATTATATCTA
* *
49027643 TATATATTATTATATATA
1 TATTTATTATTATATCTA
49027661 TATTTATT
1 TATTTATT
49027669 TATATTTTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
16 8 0.12
17 10 0.15
18 19 0.29
19 15 0.23
20 12 0.18
21 2 0.03
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTATTATTATATCTA
Found at i:49027674 original size:21 final size:22
Alignment explanation
Indices: 49027608--49027674 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 22
49027598 TATATTCTAA
*
49027608 ATATTTTATATATT-TTTATATTT
1 ATATATTATAT-TTATTTATA-TT
*
49027631 ATATATTATATTTATATATTATT
1 ATATATTATATTTATTTA-TATT
49027654 ATATA-TATATTTATTTATATT
1 ATATATTATATTTATTTATATT
49027675 TTTTGTATAC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
21 4 0.10
22 13 0.33
23 20 0.51
24 2 0.05
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
ATATATTATATTTATTTATATT
Found at i:49028182 original size:29 final size:29
Alignment explanation
Indices: 49028140--49028197 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
49028130 GCAACCCATT
* *
49028140 TTTAGTATCATATCGAAACGCTATTCCTA
1 TTTAGTATCATATCAAAACGCTAATCCTA
*
49028169 TTTATTATCATATCAAAACGCTAATCCTA
1 TTTAGTATCATATCAAAACGCTAATCCTA
49028198 ATAGAAGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (29 bp):
TTTAGTATCATATCAAAACGCTAATCCTA
Found at i:49029676 original size:21 final size:20
Alignment explanation
Indices: 49029652--49029694 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
49029642 TAATATTGGT
*
49029652 AAGTGGATTAGAAAAAAAAAG
1 AAGTGAATTA-AAAAAAAAAG
*
49029673 AAGTGAATTAAAAAGAAAAG
1 AAGTGAATTAAAAAAAAAAG
49029693 AA
1 AA
49029695 AGGATGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.65, C:0.00, G:0.21, T:0.14
Consensus pattern (20 bp):
AAGTGAATTAAAAAAAAAAG
Found at i:49030469 original size:13 final size:13
Alignment explanation
Indices: 49030451--49030475 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49030441 TAATGGTATA
49030451 TTGAATCCATGAC
1 TTGAATCCATGAC
49030464 TTGAATCCATGA
1 TTGAATCCATGA
49030476 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:49031062 original size:27 final size:27
Alignment explanation
Indices: 49031031--49031208 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
49031021 TAAATTGTAC
49031031 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49031058 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49031084 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* * *
49031112 GGCTCTAAGTGTGCGAGTTTGACTATAT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49031140 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49031167 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49031194 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49031209 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 104 0.83
28 21 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49031145 original size:82 final size:81
Alignment explanation
Indices: 49031035--49031187 Score: 218
Period size: 82 Copynumber: 1.9 Consensus size: 81
49031025 TTGTACAGCA
* * *
49031035 CTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGC
1 CTAAGTGTGCGATTTGACTATATAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGTGC
49031099 GAATTGACCATGCGGCT
65 GAATTGACCATGCGGCT
** *
49031116 CTAAGTGTGCGAGTTTGACTATATAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGC
1 CTAAGTGTGCGA-TTTGACTATATAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTGC
*
49031181 GAGTTGA
65 GAATTGA
49031188 TTATATAGCA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 12 0.19
82 50 0.79
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
CTAAGTGTGCGATTTGACTATATAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTGCG
AATTGACCATGCGGCT
Found at i:49031219 original size:27 final size:27
Alignment explanation
Indices: 49031116--49031219 Score: 73
Period size: 27 Copynumber: 3.8 Consensus size: 27
49031106 CCATGCGGCT
* * *
49031116 CTAAGTGTGCGAGTTTGACTATATAGCA
1 CTAAGTGTGCGAG-CTCAATATATAGCA
** * * **
49031144 CTAAGTGTGCGATTTGATTACGTAGCA
1 CTAAGTGTGCGAGCTCAATATATAGCA
* * *
49031171 CTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGCTCAATATATAGCA
* *
49031198 CTGAGTGTGCGGGCTCAATATA
1 CTAAGTGTGCGAGCTCAATATA
49031220 CATTCGTGAA
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
27 52 0.81
28 12 0.19
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (27 bp):
CTAAGTGTGCGAGCTCAATATATAGCA
Found at i:49036925 original size:26 final size:27
Alignment explanation
Indices: 49036829--49036967 Score: 145
Period size: 27 Copynumber: 5.1 Consensus size: 27
49036819 TGCTATATAA
* * * *
49036829 TCAACTCGCACACTTAGTGCTACGTAA
1 TCAATTCGCACACTTAGTGCAACATAG
* *
49036856 TCAAATCGCACACTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCAACATAG
* ** *
49036883 TCAAACTCGCACACTTAG-GCCGCATGG
1 TC-AATTCGCACACTTAGTGCAACATAG
* *
49036910 TCAATTCGCACACTTAGTGCATCATAT
1 TCAATTCGCACACTTAGTGCAACATAG
*
49036937 TCATTTCGCACACTTAGTGCAACATAG
1 TCAATTCGCACACTTAGTGCAACATAG
49036964 TCAA
1 TCAA
49036968 ATCCCGGGTG
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 14 0.15
27 66 0.70
28 14 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCAACATAG
Found at i:49036967 original size:54 final size:55
Alignment explanation
Indices: 49036831--49036970 Score: 160
Period size: 54 Copynumber: 2.6 Consensus size: 55
49036821 CTATATAATC
* * *
49036831 AACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCA
1 AACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATAGTCA
** * * *
49036886 AACTCGCACACTTAG-GCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTC-
1 AACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTA-CATAGTCA
**
49036939 ATTTCGCACACTTAGTGCAACATAGTCAAATC
1 AACTCGCACACTTAGTGCAACATAGTCAAATC
49036971 CCGGGTGAAT
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
53 14 0.20
54 41 0.59
55 15 0.21
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (55 bp):
AACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCTACATAGTCA
Found at i:49040316 original size:108 final size:108
Alignment explanation
Indices: 49040173--49040371 Score: 276
Period size: 108 Copynumber: 1.8 Consensus size: 108
49040163 TCCTTTTGAA
* ** *
49040173 ACTTACCATTGCCATGTCTCGACATGGTTTTACATGGTATCCTTGCCTTATG-AACTCACCAA-T
1 ACTTACCAATGCCATGTCTCGACATGGCCTTACATGATATCCTTG-CTTA-GAAACTCACCAATT
49040236 GCCATGCATTGACATGGTCTTACATGGGACCTTTGCCTTATAGAC
64 GCCATGCATTGACATGGTCTTACATGGGACCTTTGCCTTATAGAC
* * *
49040281 ACTTATCAATGCCATGTCTTGACATGGCCTTACATGATATCCTTGCTTAGAAAACTTACCAATTG
1 ACTTACCAATGCCATGTCTCGACATGGCCTTACATGATATCCTTGCTTAG-AAACTCACCAATTG
* *
49040346 CCATGCCTTGGCATGGTCTTACATGG
65 CCATGCATTGACATGGTCTTACATGG
49040372 TATCCTTAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
106 1 0.01
107 4 0.05
108 48 0.61
109 26 0.33
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (108 bp):
ACTTACCAATGCCATGTCTCGACATGGCCTTACATGATATCCTTGCTTAGAAACTCACCAATTGC
CATGCATTGACATGGTCTTACATGGGACCTTTGCCTTATAGAC
Found at i:49045976 original size:46 final size:46
Alignment explanation
Indices: 49045829--49045976 Score: 121
Period size: 46 Copynumber: 3.2 Consensus size: 46
49045819 CTAACCCGCC
**
49045829 CCTAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGC-CTAGTTACAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTC-A---ACAT
* * * *
49045878 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGCACAT--TC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTT--CAGATGCTCAACAT
49045921 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAA-CAT
49045969 CCT-AGTGA
1 CCTAAGTGA
49045977 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 23
0.71 0.09 0.21
Matches are distributed among these distances:
43 3 0.04
44 5 0.06
45 2 0.03
46 32 0.41
47 26 0.33
48 9 0.11
49 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACAT
Found at i:49053315 original size:46 final size:45
Alignment explanation
Indices: 49053246--49053418 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
49053236 GTAACCCGCC
49053246 CCTAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGCGTTCGCAT
*
49053291 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * ** *
49053341 -CTCA-CGAACTCGGACTCAACTCAACAAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
49053384 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCG
49053419 AATGCTCAAC
Statistics
Matches: 106, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 6 0.06
46 56 0.53
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:49053365 original size:93 final size:93
Alignment explanation
Indices: 49053253--49053423 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
49053243 GCCCCTAAGT
* ** *
49053253 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAG-TTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
49053317 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGAATGCCTAGTTACATCTCAC
*
49053346 GAACTCGGACTCAACTCAACAAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
49053411 CGAGTTCGAATGC
66 CGAGTTCGAATGC
49053424 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:49053439 original size:46 final size:46
Alignment explanation
Indices: 49053246--49053439 Score: 150
Period size: 46 Copynumber: 4.2 Consensus size: 46
49053236 GTAACCCGCC
*** * *
49053246 CCTAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAG-TTCGAATGCTCAACAT
*
49053291 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTC-A---ACAT
* * * *** *
49053341 -CTCA-CGAACTCGGACTCAACTCAACAAGTTCGAACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTCAACAT
49053384 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTCAA-CAT
49053432 CCT-AGTGA
1 CCTAAGTGA
49053440 CATGTCACTT
Statistics
Matches: 117, Mismatches: 19, Indels: 25
0.73 0.12 0.16
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 7 0.06
46 66 0.56
47 28 0.24
48 8 0.07
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCTCAACAT
Found at i:49058898 original size:28 final size:28
Alignment explanation
Indices: 49058858--49058939 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
49058848 GGAGGAAGCG
49058858 TTCTAGTGGCTATGCCACAAATATCTGT
1 TTCTAGTGGCTATGCCACAAATATCTGT
49058886 TTCTAGTGGCTATGCCACAAATATCTG-
1 TTCTAGTGGCTATGCCACAAATATCTGT
* *
49058913 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTAGTGGCTATGCCACAAATATCTGT
49058940 ATCTGGTGAC
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
26 8 0.16
27 16 0.31
28 27 0.53
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (28 bp):
TTCTAGTGGCTATGCCACAAATATCTGT
Found at i:49058928 original size:27 final size:26
Alignment explanation
Indices: 49058857--49058980 Score: 131
Period size: 27 Copynumber: 4.6 Consensus size: 26
49058847 TGGAGGAAGC
*
49058857 GTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
49058884 GTTTCTAGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
*
49058912 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * *
49058938 GTATCTGGTGACTCTGTCGCAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
* *
49058965 ATTCTGGTAGCTATGC
1 GTTCTGGTGGCTATGC
49058981 TGCAATTTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 19 0.22
27 39 0.46
28 27 0.32
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:49063131 original size:255 final size:255
Alignment explanation
Indices: 49062680--49063187 Score: 838
Period size: 255 Copynumber: 2.0 Consensus size: 255
49062670 TACTCAGCCG
*
49062680 TGTGCAATTCTGACTTGGATTAATGTCGACATGGCAATGACACACGGGCGTGTGGCCTACCCGTG
1 TGTGCAATTCTGACTTGGATTAATGTCGACACGGCAATGACACACGGGCGTGTGGCCTACCCGTG
* * * *
49062745 TGTCACACACGGACGTGTGAATCACCCATGTAGAAGTGCTCAGGCCGTGTGAAACACTGATTTAG
66 TGTCACACACGGACATGTGAATCACCCATGTAGAAGTGCCCAGGCCATGTGAAACACTAATTTAG
49062810 GCCCAATTTGTCCTTTCTTGGCCCGTTTCTTGCTCATTTCGCCATCCTAAGCTCTCCTGAGTATA
131 GCCCAATTTGTCCTTTCTTGGCCCGTTTCTTGCTCATTTCGCCATCCTAAGCTCTCCTGAGTATA
* *
49062875 AAACATGAAATTAAAGGATTAGGACCATCAAATTCAATGAAACTAAGGAAATATCATCTA
196 AAACATGAAATTAAAGGATTAGGACCATCAAATTCAATGAAACCAAGGAAAAATCATCTA
* * *
49062935 TGTGCAATTCTGACTTGGATTAATGTCGACACGGCCATGACACACGGGCGTGTGGTCTACCTGTG
1 TGTGCAATTCTGACTTGGATTAATGTCGACACGGCAATGACACACGGGCGTGTGGCCTACCCGTG
* * * * *
49063000 TGTCACACACGGACATGTTAATCACCCGTGTGGAAGTGCCCAGGTCATGTGAAATACTAATTTAG
66 TGTCACACACGGACATGTGAATCACCCATGTAGAAGTGCCCAGGCCATGTGAAACACTAATTTAG
* *
49063065 GCCCAATTTGTCCGTTT-TTGGCCCGTTTCTTGCTCATTTCTCCATCCTAAGCTCTTCTGAGTAT
131 GCCCAATTTGTCC-TTTCTTGGCCCGTTTCTTGCTCATTTCGCCATCCTAAGCTCTCCTGAGTAT
*
49063129 AAAACATGAAATTAAAGGATTAGGAGCATCAAATTCAATGAAACCAAGGAAAAATCATC
195 AAAACATGAAATTAAAGGATTAGGACCATCAAATTCAATGAAACCAAGGAAAAATCATC
49063188 CATAAATATG
Statistics
Matches: 234, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
255 231 0.99
256 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (255 bp):
TGTGCAATTCTGACTTGGATTAATGTCGACACGGCAATGACACACGGGCGTGTGGCCTACCCGTG
TGTCACACACGGACATGTGAATCACCCATGTAGAAGTGCCCAGGCCATGTGAAACACTAATTTAG
GCCCAATTTGTCCTTTCTTGGCCCGTTTCTTGCTCATTTCGCCATCCTAAGCTCTCCTGAGTATA
AAACATGAAATTAAAGGATTAGGACCATCAAATTCAATGAAACCAAGGAAAAATCATCTA
Found at i:49081135 original size:27 final size:27
Alignment explanation
Indices: 49081105--49081340 Score: 355
Period size: 27 Copynumber: 8.7 Consensus size: 27
49081095 TATTGAAATG
* * * *
49081105 CCCTCAATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
49081132 CCCTCGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
49081159 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
49081186 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
49081213 CCCTCGATTTATAGAATTACCATTTTG
1 CCCTCGATTTATAGAATTACCATTTTA
* *
49081240 CCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
49081267 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
49081294 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
49081321 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
49081341 TAAAATACCC
Statistics
Matches: 193, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 193 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:49081349 original size:27 final size:27
Alignment explanation
Indices: 49081157--49081458 Score: 194
Period size: 27 Copynumber: 11.2 Consensus size: 27
49081147 ATTATCGTTT
* ***
49081157 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* ***
49081184 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* ***
49081211 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * * ****
49081238 TGCCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCAAAA
* ***
49081265 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* * ***
49081292 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAA
* *
49081319 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
49081346 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* ***
49081373 TATCCTCGATCGGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
49081400 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* *
49081427 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
49081454 TACCC
1 TACCC
49081459 CTGGCTTGTA
Statistics
Matches: 243, Mismatches: 30, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 242 1.00
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:49081350 original size:81 final size:81
Alignment explanation
Indices: 49081085--49081369 Score: 304
Period size: 81 Copynumber: 3.5 Consensus size: 81
49081075 ACAAGAGCGT
* * * * * * *
49081085 TTTACCAAATTATTGAAATGCCCTCAATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATT
* *
49081150 ATCGTTTTACCCTCGA
66 ACCATTTTACCCTCGA
* * * *** * *
49081166 TTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATT
*
49081231 ACCATTTTGCCCTCGA
66 ACCATTTTACCCTCGA
* * ** *
49081247 TTTATAGAATTATCGT--TTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAA
1 TTTACAAAATTA-C-TAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAA
49081310 TTACCATTTTACCCTCGA
64 TTACCATTTTACCCTCGA
* * *
49081328 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCA
49081370 AAATATCCTC
Statistics
Matches: 171, Mismatches: 29, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 168 0.98
82 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATT
ACCATTTTACCCTCGA
Found at i:49081459 original size:27 final size:27
Alignment explanation
Indices: 49081333--49081514 Score: 188
Period size: 27 Copynumber: 6.8 Consensus size: 27
49081323 CTCGATTTAC
* * **
49081333 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
* * **
49081360 AAAATTACCAAAATA-TCCTCGATCGGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
49081387 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
49081414 AAAATTACTAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
49081441 AAAATTACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * * *
49081468 AAAATTTCTAAAATAACCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
49081495 AAAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
49081515 TAGGGTAGAA
Statistics
Matches: 126, Mismatches: 27, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
26 13 0.10
27 110 0.87
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:49081470 original size:81 final size:81
Alignment explanation
Indices: 49081333--49081499 Score: 210
Period size: 81 Copynumber: 2.1 Consensus size: 81
49081323 CTCGATTTAC
* * *
49081333 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATATCCTCGATCGGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTCGATCGGTAAAATTACCAA
* *
49081398 AATACCCCTGGTTTGT
66 AATAACCCTGATTTGT
** * * * * *
49081414 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGCT-TGTAAAATTTCTA
1 AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATA-CCCTCGATCGGTAAAATTACCA
49081478 AAATAACCCTGATTTGT
65 AAATAACCCTGATTTGT
49081495 AAAAT
1 AAAAT
49081500 ATCGAAATAC
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 68 0.93
82 5 0.07
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTCGATCGGTAAAATTACCAA
AATAACCCTGATTTGT
Found at i:49081563 original size:27 final size:27
Alignment explanation
Indices: 49081502--49081744 Score: 335
Period size: 27 Copynumber: 9.0 Consensus size: 27
49081492 TGTAAAATAT
49081502 CGAAATACCCCTGTAGGGTAGAA-TAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
49081528 CGAAATACCCCTAAAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
49081555 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
49081582 TGAAATAACCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
49081609 CGAAATACCTCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
49081636 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
49081663 CGAAATACCCTTGTAGGGTAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
49081690 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * * *
49081717 CGAGATACCCTTATGGGGTATAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
49081744 C
1 C
49081745 ATTTTGCCCC
Statistics
Matches: 189, Mismatches: 27, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
26 21 0.11
27 168 0.89
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:49082001 original size:24 final size:25
Alignment explanation
Indices: 49081946--49082039 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
49081936 AGGAAGTGCT
*
49081946 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
49081971 AAAAGGGTTTTGCCCCAGTTTA-CG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
49081995 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
49082019 AATAAGGGCTTTGCCCCAGTT
1 AA-AAGGGCTTTGCCCCAGTT
49082040 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
24 25 0.39
25 39 0.61
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:49082002 original size:49 final size:49
Alignment explanation
Indices: 49081946--49082039 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
49081936 AGGAAGTGCT
*
49081946 AAAAGGGCTATGCCCCAGTTTACCGAA-AAGGGTTTTGCCCCAGTTTACG
1 AAAAGGGCTATGCCCCAGTTTACC-AATAAGGGCTTTGCCCCAGTTTACG
* *
49081995 AAAAGGGCTTTGCCCCAGTTTATCAATAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCAATAAGGGCTTTGCCCCAGTT
49082040 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 2 0.05
49 39 0.95
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (49 bp):
AAAAGGGCTATGCCCCAGTTTACCAATAAGGGCTTTGCCCCAGTTTACG
Found at i:49082052 original size:24 final size:24
Alignment explanation
Indices: 49081946--49082075 Score: 127
Period size: 25 Copynumber: 5.2 Consensus size: 24
49081936 AGGAAGTGCT
* *
49081946 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
* *
49081971 AAAAGGGTTTTGCCCCAGTTTACG
1 AAAAGGGCTTTGCCCCAGTTTATG
*
49081995 AAAAGGGCTTTGCCCCAGTTTATC
1 AAAAGGGCTTTGCCCCAGTTTATG
*
49082019 AATAAGGGCTTTGCCCCAG-TTATT
1 AA-AAGGGCTTTGCCCCAGTTTATG
**
49082043 AAAAGAGGCTAGGCCTCCAGTTATATG
1 AAAAG-GGCTTTGCC-CCAGTT-TATG
49082070 ATAAAG
1 A-AAAG
49082076 CAGCTATGCT
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.03
24 38 0.42
25 40 0.44
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATG
Found at i:49084453 original size:27 final size:27
Alignment explanation
Indices: 49084437--49084604 Score: 239
Period size: 27 Copynumber: 6.2 Consensus size: 27
49084427 CAATTTGTAA
* *
49084437 AATTACTGTTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAG
*
49084464 AATTACCGTTTTACCCTCGATTTAGAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
49084491 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
49084518 AATTACCGTTTTACCCTCAATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
49084545 AATTACCGTTTTACCCT-GAATTTATAG
1 AATTACCGTTTTACCCTCG-ATTTACAG
* *
49084572 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAG
49084599 AATTAC
1 AATTAC
49084605 TAAAATACCA
Statistics
Matches: 127, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
27 126 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAG
Found at i:49084549 original size:81 final size:81
Alignment explanation
Indices: 49084435--49084604 Score: 270
Period size: 81 Copynumber: 2.1 Consensus size: 81
49084425 CTCAATTTGT
* *
49084435 AAAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCG-ATTTAGAGAATTACCA
1 AAAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTACCCT-GAATTTAGAGAATTACCA
49084499 TTTTACCCTCGATTTAC
65 TTTTACCCTCGATTTAC
* * * *
49084516 AGAATTACCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTGAATTTATAGAATTACCAT
1 AAAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTACCCTGAATTTAGAGAATTACCAT
49084581 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
49084597 AAAATTAC
1 AAAATTAC
49084605 TAAAATACCA
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 80 0.99
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.38
Consensus pattern (81 bp):
AAAATTACCGTTTTACCCTCAATTTACAAAATTACCGTTTTACCCTGAATTTAGAGAATTACCAT
TTTACCCTCGATTTAC
Found at i:49084646 original size:27 final size:27
Alignment explanation
Indices: 49084605--49084758 Score: 161
Period size: 27 Copynumber: 5.8 Consensus size: 27
49084595 ACAAAATTAC
*
49084605 TAAAA-TACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
*
49084631 TAAAATTACTAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* *
49084658 TAAAATTACCAAAACACCCCTAGCTTG
1 TAAAATTACCAAAATACCCCTAGTTTG
* *
49084685 TAAAATTACCAAAATACCCCTAATTTA
1 TAAAATTACCAAAATACCCCTAGTTTG
* * * * *
49084712 TGAACTTATCAAAATA-CTCTTGATTTG
1 TAAAATTACCAAAATACCCCTAG-TTTG
* *
49084739 TAAAA-TATCGAAATACCCCT
1 TAAAATTACCAAAATACCCCT
49084759 GTAGGGTAGA
Statistics
Matches: 105, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
26 17 0.16
27 88 0.84
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAGTTTG
Found at i:49084788 original size:27 final size:27
Alignment explanation
Indices: 49084747--49084990 Score: 317
Period size: 27 Copynumber: 9.0 Consensus size: 27
49084737 TGTAAAATAT
49084747 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * **
49084774 TGAAATACCCATGTACAGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
49084801 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** * * *
49084828 TAAAATAACCTTGTAGGGTAGAACTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
49084855 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
49084882 TGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
49084909 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
49084936 CGAAATACCCCAGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
49084963 CGAGATACCCTTGTGGGGTATAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
49084990 C
1 C
49084991 ATTTTGCCCT
Statistics
Matches: 183, Mismatches: 34, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 183 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:49085221 original size:25 final size:25
Alignment explanation
Indices: 49085193--49085282 Score: 135
Period size: 25 Copynumber: 3.6 Consensus size: 25
49085183 GGGAAGTGCT
* *
49085193 AAAAGGGCTATACCCTAGTTTACCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
*
49085218 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
* *
49085243 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
49085268 AAAAGGGCTTTGCCC
1 AAAAGGGCTTTGCCC
49085283 CAATTATTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:49085300 original size:24 final size:25
Alignment explanation
Indices: 49085218--49085300 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
49085208 TAGTTTACCA
* * *
49085218 AAAAG-GGCTTTGCCCTAGTTTACC
1 AAAAGAGGCTTTGCCCCAGATTATC
*
49085242 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGATTATC
*
49085267 AAAA-AGGGCTTTGCCCCA-ATTATT
1 AAAAGA-GGCTTTGCCCCAGATTATC
49085291 AAAAGAGGCT
1 AAAAGAGGCT
49085301 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
24 16 0.31
25 35 0.69
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGATTATC
Found at i:49085311 original size:50 final size:50
Alignment explanation
Indices: 49085193--49085312 Score: 118
Period size: 50 Copynumber: 2.4 Consensus size: 50
49085183 GGGAAGTGCT
** * * *
49085193 AAAAGGGCTATACCCTAGTTTACCAAAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTAGGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGATTACCG
** * **
49085243 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCCA-ATTA-TT
1 AAAAGGGCTAGGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGATTACCG
49085291 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTAGGCC-CCAGTT
49085313 ATATGATAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
48 5 0.09
49 10 0.17
50 43 0.74
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTAGGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGATTACCG
Found at i:49101741 original size:15 final size:15
Alignment explanation
Indices: 49101723--49101764 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
49101713 TCCATAACGG
*
49101723 AGAAATCCAGAATAT
1 AGAAATCCAGAATAA
49101738 AGAAATCCA-ATATAA
1 AGAAATCCAGA-ATAA
49101753 AGAAATCCAGAA
1 AGAAATCCAGAA
49101765 GAAAATATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.57, C:0.14, G:0.12, T:0.17
Consensus pattern (15 bp):
AGAAATCCAGAATAA
Found at i:49110148 original size:41 final size:42
Alignment explanation
Indices: 49110090--49110248 Score: 159
Period size: 41 Copynumber: 3.9 Consensus size: 42
49110080 CGATTCTTAG
* *
49110090 CACTAGCTTAAAAGCCCTTCGAGACCAAGCTCGGATTA-GAC
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGAC
* * *
49110131 CACTGGCTCGAAGGCCCTTC-AGAACTAAG-TCCGG-TTATGA-
1 CACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTATGAC
* * * * * *
49110171 CACTGGCTCTAAAGCCCTTCGAAACTAAGTTC-GATTATTAG
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGAC
49110212 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATT
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATT
49110249 TAGACCCCGA
Statistics
Matches: 97, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
39 1 0.01
40 36 0.37
41 56 0.58
42 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (42 bp):
CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGAC
Found at i:49115433 original size:27 final size:27
Alignment explanation
Indices: 49115403--49115580 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
49115393 ATATTGAGCC
* *
49115403 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
49115430 CGCACACTTAGTGCTACGTAATCCAA-T
1 CGCACACTTAGTGCTACATAAT-CAACT
*
49115457 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
49115485 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
49115512 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
49115539 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
49115566 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49115581 GTACAATTTA
Statistics
Matches: 129, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 102 0.79
28 26 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:49123327 original size:27 final size:27
Alignment explanation
Indices: 49123297--49123474 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49123287 ATATTGAGTC
* * * *
49123297 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
49123324 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49123351 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
49123379 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
49123406 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
49123433 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49123460 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49123475 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:49123436 original size:82 final size:81
Alignment explanation
Indices: 49123318--49123473 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49123308 TGCTATATAA
* *
49123318 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
49123383 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
49123400 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
49123464 CACTTAGTGC
65 CACTTAGTGC
49123474 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:49128760 original size:49 final size:47
Alignment explanation
Indices: 49128700--49129151 Score: 692
Period size: 47 Copynumber: 9.6 Consensus size: 47
49128690 GATAATTGTG
* *
49128700 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49128747 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49128794 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49128843 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49128892 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49128939 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49128986 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49129033 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGG-CGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
49129079 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
49129126 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
49129152 TCCCGAAGGG
Statistics
Matches: 375, Mismatches: 25, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
45 2 0.01
46 40 0.11
47 239 0.64
48 2 0.01
49 92 0.25
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:49134084 original size:22 final size:23
Alignment explanation
Indices: 49134046--49134106 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 23
49134036 TTGTAAGACC
* *
49134046 TAAAGATGAATTAAAAATAGTAT
1 TAAAGATGAAATAAAAAAAGTAT
49134069 TAAAGA-GAAATAAAAAAAGTAATT
1 TAAAGATGAAATAAAAAAAGT-A-T
*
49134093 TAAAAAT-AAATAAA
1 TAAAGATGAAATAAA
49134107 GATAAAAGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
22 12 0.38
23 7 0.22
24 13 0.41
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.25
Consensus pattern (23 bp):
TAAAGATGAAATAAAAAAAGTAT
Found at i:49134096 original size:24 final size:22
Alignment explanation
Indices: 49134046--49134089 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
49134036 TTGTAAGACC
* *
49134046 TAAAGATGAATTAAAAATAGTAT
1 TAAAGA-GAAATAAAAAAAGTAT
49134069 TAAAGAGAAATAAAAAAAGTA
1 TAAAGAGAAATAAAAAAAGTA
49134090 ATTTAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.23
Consensus pattern (22 bp):
TAAAGAGAAATAAAAAAAGTAT
Found at i:49138900 original size:34 final size:34
Alignment explanation
Indices: 49138855--49138965 Score: 125
Period size: 34 Copynumber: 3.3 Consensus size: 34
49138845 GAAGTACATA
49138855 AATATATATGTATGGCTTGGCATAATCG-AAGATG
1 AATATATATGTATGGCTTGGCATAATCGAAAG-TG
* * * *
49138889 ATTATAAATGTATAGCTTGGTATAATCGAAAGTG
1 AATATATATGTATGGCTTGGCATAATCGAAAGTG
* ** * *
49138923 AATATATATGTATGGTTTGATATAACCGAAGGTG
1 AATATATATGTATGGCTTGGCATAATCGAAAGTG
49138957 AATATATAT
1 AATATATAT
49138966 ATACATTTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
34 62 0.95
35 3 0.05
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (34 bp):
AATATATATGTATGGCTTGGCATAATCGAAAGTG
Found at i:49140812 original size:57 final size:57
Alignment explanation
Indices: 49140695--49140831 Score: 145
Period size: 57 Copynumber: 2.4 Consensus size: 57
49140685 TAGACAACAA
* *
49140695 GATTACCAGTCCAGGCTAAATCCTGTCTACAATATATACTCAATTGAGCTTAGTTAG
1 GATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAGAGCTTAGTTAG
* * * **
49140752 GATTACCAGTCCAAGCTAAATCCTTTTTATGACATATACTCTAA-AGAGCTT-GATCT-G
1 GATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTC-AATAGAGCTTAG-T-TAG
* *
49140809 GATTACCCGTCCGGGCTAAATCC
1 GATTACCAGTCCAGGCTAAATCC
49140832 AATCCATAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
56 1 0.01
57 63 0.94
58 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (57 bp):
GATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAGAGCTTAGTTAG
Found at i:49144509 original size:42 final size:43
Alignment explanation
Indices: 49144463--49144580 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 43
49144453 TGTGATATCG
*
49144463 TGTAAGACCATGTCTGGGACATTGGCATCGTAT-CTGATTTCA
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATGCTGATTACA
* * * * *
49144505 TGTAAGACCCTGTCTGGGAAAGTGGCATC-AATGGTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATCGTAT-GCTGATTACA
* * *
49144548 TGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 TGTAAGACCATGTCTGGGACATTGGCATCGTAT
49144581 ATGCTTTCTG
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
41 2 0.03
42 26 0.43
43 30 0.50
44 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATGCTGATTACA
Found at i:49144556 original size:43 final size:42
Alignment explanation
Indices: 49144463--49144566 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
49144453 TGTGATATCG
* * * * *
49144463 TGTAAGACCATGTCTGGGACATTGGCATCGTATCTGATTTCA
1 TGTAAGACCCTGTCTGGGAAAGTGGCATCGAATCTGATTACA
*
49144505 TGTAAGACCCTGTCTGGGAAAGTGGCATC-AATGGTTGATTACA
1 TGTAAGACCCTGTCTGGGAAAGTGGCATCGAAT--CTGATTACA
49144548 TGTAAGACCAC-GTCTGGGA
1 TGTAAGACC-CTGTCTGGGA
49144567 CGTTGGCATT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
41 2 0.04
42 26 0.49
43 24 0.45
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (42 bp):
TGTAAGACCCTGTCTGGGAAAGTGGCATCGAATCTGATTACA
Found at i:49150713 original size:27 final size:26
Alignment explanation
Indices: 49150682--49150801 Score: 129
Period size: 27 Copynumber: 4.5 Consensus size: 26
49150672 AATAGTGCCG
*
49150682 TCGCACAC-TAGTGCTACATAGTCAAAC
1 TCGCACACTTAGTGC-ACATAGTC-AAT
*
49150709 TCGCACACTTAGTGC-CGATGGTC-AT
1 TCGCACACTTAGTGCAC-ATAGTCAAT
* *
49150734 TCGCACACTTAGTGCATCATATTCATT
1 TCGCACACTTAGTGCA-CATAGTCAAT
*
49150761 TCGCACACTTAGTGCAACATAGTCAAA
1 TCGCACACTTAGTGC-ACATAGTCAAT
49150788 TCGCACACTTAGTG
1 TCGCACACTTAGTG
49150802 TGTAAATTTA
Statistics
Matches: 79, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
25 16 0.20
26 5 0.06
27 51 0.65
28 7 0.09
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
TCGCACACTTAGTGCACATAGTCAAT
Found at i:49154828 original size:27 final size:27
Alignment explanation
Indices: 49154798--49154940 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
49154788 CTCGATTTAC
*
49154798 AAAATTATTGAAATACCCTTGTAGGGT
1 AAAATTACTGAAATACCCTTGTAGGGT
* * *
49154825 AAAATTACTGAAACACCCCTATAGGGT
1 AAAATTACTGAAATACCCTTGTAGGGT
* *
49154852 AGAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACTGAAATACCCTTGTAGGGT
* *
49154879 AGAAA-TACCGAAATACCCCTGTAGGGT
1 A-AAATTACTGAAATACCCTTGTAGGGT
* * * *
49154906 AGAATTACTGAGATACCCTTATGGGGT
1 AAAATTACTGAAATACCCTTGTAGGGT
49154933 AAAATTAC
1 AAAATTAC
49154941 CATTTTGCCC
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
26 2 0.02
27 92 0.96
28 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGTAGGGT
Found at i:49154865 original size:54 final size:54
Alignment explanation
Indices: 49154807--49154941 Score: 191
Period size: 54 Copynumber: 2.5 Consensus size: 54
49154797 CAAAATTATT
*
49154807 GAAATACCCTTGTAGGGTAAAATTACTGAAACACCCCTATAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAAAATTACCGAAACACCCCTATAGGGTAGAATTACC
* * *
49154861 GAAATACCCTTGTAGGGTAGAAA-TACCGAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTA-AAATTACCGAAACACCCCTATAGGGTAGAATTACC
* * *
49154915 GAGATACCCTTATGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAAAATTACC
49154942 ATTTTGCCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
53 3 0.04
54 66 0.92
55 3 0.04
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (54 bp):
GAAATACCCTTGTAGGGTAAAATTACCGAAACACCCCTATAGGGTAGAATTACC
Found at i:49155476 original size:20 final size:20
Alignment explanation
Indices: 49155436--49155476 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
49155426 TGTGTGCTGT
* *
49155436 TATTGTGGGCTTTGTATCGA
1 TATTGTGGGCTTCGTACCGA
*
49155456 TATTGTGGGCTTCGTGCCGA
1 TATTGTGGGCTTCGTACCGA
49155476 T
1 T
49155477 TATAGACCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.15, G:0.32, T:0.41
Consensus pattern (20 bp):
TATTGTGGGCTTCGTACCGA
Found at i:49155696 original size:6 final size:6
Alignment explanation
Indices: 49155687--49155774 Score: 63
Period size: 6 Copynumber: 14.3 Consensus size: 6
49155677 TTTCATTCAC
* * *
49155687 ATTCTG ATTCTA ATTCTG TTATCTG ATTCTG ATTCTG ATTCTG -TCACATG
1 ATTCTG ATTCTG ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* * * *
49155737 GTTCTG ATTCTA ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
49155775 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
5 2 0.03
6 52 0.81
7 9 0.14
8 1 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:49155715 original size:25 final size:25
Alignment explanation
Indices: 49155687--49155753 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
49155677 TTTCATTCAC
*
49155687 ATTCTGATTCTAATTCTGTTATC-TG
1 ATTCTGATTCTAATTCTGTCA-CATG
*
49155712 ATTCTGATTCTGATTCTGTCACATG
1 ATTCTGATTCTAATTCTGTCACATG
*
49155737 GTTCTGATTCTAATTCT
1 ATTCTGATTCTAATTCT
49155754 CATTTTGATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTAATTCTGTCACATG
Found at i:49158349 original size:34 final size:34
Alignment explanation
Indices: 49158280--49158354 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 34
49158270 TAGAGTTTAA
* **
49158280 CAGTCTGGGCCTAAGCCCATATCAGTCGCAATAT
1 CAGTGTGGGCCTAAGCCCATATCAGTAACAATAT
* *
49158314 CAGTGTGGGCCTTAGCCCAATAT-AGTAACAGTAT
1 CAGTGTGGGCCTAAGCCC-ATATCAGTAACAATAT
*
49158348 CAATGTG
1 CAGTGTG
49158355 CATACAAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 30 0.88
35 4 0.12
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (34 bp):
CAGTGTGGGCCTAAGCCCATATCAGTAACAATAT
Found at i:49168294 original size:229 final size:229
Alignment explanation
Indices: 49167870--49168330 Score: 755
Period size: 229 Copynumber: 2.0 Consensus size: 229
49167860 TTCAAAGGCT
* *
49167870 AATGTGGGAGATTCGAGTAGAGATCGTACTAAATCACATTCAAGTTTTAGAGCTCCAGCTACATC
1 AATGTGGGAGATTCAAGTAGAGATCGTACTAAATCACATTCAAGCTTTAGAGCTCCAGCTACATC
* * *
49167935 TGTTGCTAGTGTTGAAAATGTTCGATCTGATTGATCCAAGTGTAAACACTGTGGTAAAAGACATT
66 TGTTGCCAGTGTTGAAAATGTTCGATCTGATCGATCCAAGTGTAAACACTGTGGTAAAAGACATC
49168000 CAGGAAATTGTAGACTGTACGATCGGGCTTGTTTCAGATTTGGATCATTAGAGAATTTCATCCGT
131 CAGGAAATTGTAGACTGTACGATCGGGCTTGTTTCAGATTTGGATCATTAGAGAATTTCATCCGT
49168065 GATTGTCCCGAATCTATCAGCAAGAAATTGTGCAA
196 GATTGTCCCGAATCTATCAGCAAGAAATT-TGCAA
* * * *
49168100 AATGTGGGAGATTCAAGTAGAGATCGTGCTAGATCACATTCGAGCTTTAGAGCTCTAGCTACATC
1 AATGTGGGAGATTCAAGTAGAGATCGTACTAAATCACATTCAAGCTTTAGAGCTCCAGCTACATC
* * *
49168165 TGTTGCCAGTGTTGGAAATGTTCGATCTGATCGA-CCTAGTGTAAACACTGTGGTAAAAGATATC
66 TGTTGCCAGTGTTGAAAATGTTCGATCTGATCGATCCAAGTGTAAACACTGTGGTAAAAGACATC
*
49168229 CA-GACAATTGTAGATTGTACGATCGGGCTTGTTTCAGATTTGGATCATTAGAGAATTTCATCCG
131 CAGGA-AATTGTAGACTGTACGATCGGGCTTGTTTCAGATTTGGATCATTAGAGAATTTCATCCG
* *
49168293 TGATTGTCTCGAATCTATTAGCAAGAAATTTGCAA
195 TGATTGTCCCGAATCTATCAGCAAGAAATTTGCAA
49168328 AAT
1 AAT
49168331 CTGAGGAAGT
Statistics
Matches: 215, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
228 10 0.05
229 115 0.53
230 90 0.42
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (229 bp):
AATGTGGGAGATTCAAGTAGAGATCGTACTAAATCACATTCAAGCTTTAGAGCTCCAGCTACATC
TGTTGCCAGTGTTGAAAATGTTCGATCTGATCGATCCAAGTGTAAACACTGTGGTAAAAGACATC
CAGGAAATTGTAGACTGTACGATCGGGCTTGTTTCAGATTTGGATCATTAGAGAATTTCATCCGT
GATTGTCCCGAATCTATCAGCAAGAAATTTGCAA
Found at i:49172326 original size:42 final size:42
Alignment explanation
Indices: 49172222--49172381 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 42
49172212 ATATGTGTTA
* * *
49172222 TCGTGTAAGACCACGTCTAGGACGTTGGCATTG-ACTTATGATT
1 TCGTGTAAGACCACATCTGGGACGTTGGCATCGTA-TT-TGATT
49172265 TACGTGTAAGACCACATCTGGGACGTTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACATCTGGGACGTTGGCATCGTATTTGATT
*
49172308 TCGTGTAAGACC-CTATCTGGGATAG-TGGCATCGATATTTGATT
1 TCGTGTAAGACCAC-ATCTGGGA-CGTTGGCATCG-TATTTGATT
* * * *
49172351 ACATGTAAGACCACATTTGGGACATTGGCAT
1 TCGTGTAAGACCACATCTGGGACGTTGGCAT
49172382 TGTACGAGAT
Statistics
Matches: 101, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 40 0.40
44 32 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TCGTGTAAGACCACATCTGGGACGTTGGCATCGTATTTGATT
Found at i:49179548 original size:43 final size:43
Alignment explanation
Indices: 49179483--49179640 Score: 187
Period size: 43 Copynumber: 3.7 Consensus size: 43
49179473 TATGTGTTAT
** *
49179483 CATGTAAGACCACGTCTTGGACGTTGGCATCTTATTTGATTTA
1 CATGTAAGACCATATCTGGGACGTTGGCATCTTATTTGATTTA
* *
49179526 CGTGTAAGACCATATTTGGGACGTTGGCATCTTATTTGATTT-
1 CATGTAAGACCATATCTGGGACGTTGGCATCTTATTTGATTTA
* * *
49179568 CATGTAAGACCCTATCTAGGACAG-TGGCATCGATATTTGA-TTA
1 CATGTAAGACCATATCTGGGAC-GTTGGCATC-TTATTTGATTTA
* *
49179611 CATGTAAGACCACATCTGGGACATTGGCAT
1 CATGTAAGACCATATCTGGGACGTTGGCAT
49179641 TGTACGAGAT
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
42 27 0.28
43 70 0.72
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
CATGTAAGACCATATCTGGGACGTTGGCATCTTATTTGATTTA
Found at i:49179631 original size:85 final size:85
Alignment explanation
Indices: 49179482--49179640 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 85
49179472 ATATGTGTTA
* * * * * *
49179482 TCATGTAAGACCACGTCTTGGACGTTGGCATCTTATTTGATTTACGTGTAAGACCATATTTGGGA
1 TCATGTAAGACCACATCTAGGACGTTGGCATCATATTTGATTTACATGTAAGACCACATCTGGGA
*
49179547 CGTTGGCATCTTATTTGATT
66 CATTGGCATCTTATTTGATT
49179567 TCATGTAAGACC-CTATCTAGGACAG-TGGCATCGATATTTGA-TTACATGTAAGACCACATCTG
1 TCATGTAAGACCAC-ATCTAGGAC-GTTGGCATC-ATATTTGATTTACATGTAAGACCACATCTG
49179629 GGACATTGGCAT
63 GGACATTGGCAT
49179641 TGTACGAGAT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
84 1 0.02
85 55 0.86
86 8 0.12
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (85 bp):
TCATGTAAGACCACATCTAGGACGTTGGCATCATATTTGATTTACATGTAAGACCACATCTGGGA
CATTGGCATCTTATTTGATT
Found at i:49185227 original size:50 final size:50
Alignment explanation
Indices: 49185110--49185449 Score: 256
Period size: 50 Copynumber: 6.7 Consensus size: 50
49185100 TGTGAGAACA
* *** ** *
49185110 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACGGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG--TTAGGTCG
* * * *
49185162 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCG
** * * * *
49185212 CATGTACAGTACTAAGTGCAGGCTACTATGCGTATCC-GATAGCTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATAG-TTAGGTCG
** ** * * *
49185263 TGTGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAGCTTCGAT--
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG-TTAGGTCG
* * * * * *
49185312 CATGAGTGTATTACTAAGTGCAGGCTACTATGTGTATCAAATGGTTAAGTCA
1 CAT--GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCG
* * * *
49185364 CGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATTGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCG
* *
49185414 CATGTGTAGTAC-ACAGTGCAGGCTAATATGCGTACC
1 CATGTGTAGTACTA-AGTGCAGGCTACTATGTGTACC
49185450 TAAGAGCTTC
Statistics
Matches: 229, Mismatches: 51, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
49 2 0.01
50 112 0.49
51 80 0.35
52 35 0.15
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCG
Found at i:49185289 original size:51 final size:51
Alignment explanation
Indices: 49185219--49185391 Score: 224
Period size: 51 Copynumber: 3.4 Consensus size: 51
49185209 TCGCATGTAC
49185219 AGTACTAAGTGCAGGCTACTATGCGTATCCGATAGCTTCGATCATGTGTGT
1 AGTACTAAGTGCAGGCTACTATGCGTATCCGATAGCTTCGATCATGTGTGT
* * *
49185270 AGTACTAAGTGCAGGCTACTATACGTACCCGATAGCTTCGATCATGAGTGT
1 AGTACTAAGTGCAGGCTACTATGCGTATCCGATAGCTTCGATCATGTGTGT
* * ** * * *
49185321 ATTACTAAGTGCAGGCTACTATGTGTATCAAAT-GGTT-AAGTCACGTGTGT
1 AGTACTAAGTGCAGGCTACTATGCGTATCCGATAGCTTCGA-TCATGTGTGT
*
49185371 AGTACTAAATGCAGGCTACTA
1 AGTACTAAGTGCAGGCTACTA
49185392 CGTGTACCAG
Statistics
Matches: 106, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
49 1 0.01
50 30 0.28
51 75 0.71
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (51 bp):
AGTACTAAGTGCAGGCTACTATGCGTATCCGATAGCTTCGATCATGTGTGT
Found at i:49193024 original size:22 final size:21
Alignment explanation
Indices: 49192999--49193039 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
49192989 TGTTGGAATG
49192999 CTCACACGGGCATGTTGCCCCT
1 CTCACACGGGCATG-TGCCCCT
* *
49193021 CTCACATGGGCGTGTGCCC
1 CTCACACGGGCATGTGCCC
49193040 TTGTGTCAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.12, C:0.39, G:0.27, T:0.22
Consensus pattern (21 bp):
CTCACACGGGCATGTGCCCCT
Found at i:49195898 original size:40 final size:40
Alignment explanation
Indices: 49195814--49196037 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
49195804 TTGAATGATG
* * * *
49195814 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
49195854 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
49195894 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49195932 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49195972 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
49196013 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49196038 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49196032 original size:80 final size:80
Alignment explanation
Indices: 49195814--49196037 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
49195804 TTGAATGATG
* * * * *
49195814 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
49195877 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
49195894 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
49195956 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
49195972 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
49196037 G
66 G
49196038 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:49203938 original size:39 final size:39
Alignment explanation
Indices: 49203792--49204013 Score: 279
Period size: 39 Copynumber: 5.6 Consensus size: 39
49203782 TTGAATGATG
* * * *
49203792 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
49203832 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
49203872 TCCGGGCTAAG-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
49203910 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
49203949 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
49203989 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
49204014 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 34 0.21
39 72 0.44
40 48 0.30
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49204035 original size:78 final size:78
Alignment explanation
Indices: 49203831--49204046 Score: 226
Period size: 78 Copynumber: 2.8 Consensus size: 78
49203821 AAGTGACCAT
* ** * *
49203831 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCGAAGGCATT
1 ATCCGGGCTAAG-TCCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCGAAGGCATT
49203894 GGTGCGAGTTACTAA
64 GGTGCGAGTTACTAA
* ** * *
49203909 ATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTGG
49203974 TGCGAGTTACTATA
66 TGCGAGTTACTA-A
* * *
49203988 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGT-CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTT-AAGTCCGAAGG
49204047 TACGTGATTT
Statistics
Matches: 120, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
76 1 0.01
77 35 0.29
78 48 0.40
79 36 0.30
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (78 bp):
ATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCGAAGGCATTGG
TGCGAGTTACTAA
Found at i:49210051 original size:28 final size:28
Alignment explanation
Indices: 49209994--49210173 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
49209984 TAAATTGTGC
* *
49209994 AGCACTAAGTGTGCGA-ATTGAATATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
49210021 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
49210049 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
49210077 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
49210104 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
49210132 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
49210159 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49210174 GACTTAATAT
Statistics
Matches: 144, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
27 65 0.45
28 79 0.55
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:49210059 original size:55 final size:54
Alignment explanation
Indices: 49209994--49210173 Score: 270
Period size: 55 Copynumber: 3.3 Consensus size: 54
49209984 TAAATTGTGC
49209994 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAG-TTGACTATGT
* *
49210049 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * * *
49210104 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAAT-TGAATATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
49210159 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49210174 GACTTAATAT
Statistics
Matches: 116, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
54 1 0.01
55 89 0.77
56 26 0.22
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:49210109 original size:83 final size:82
Alignment explanation
Indices: 49209994--49210173 Score: 288
Period size: 83 Copynumber: 2.2 Consensus size: 82
49209984 TAAATTGTGC
*
49209994 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGT
*
49210059 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* * *
49210077 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGT
*
49210142 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
49210159 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49210174 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
82 22 0.24
83 68 0.76
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:49213576 original size:35 final size:35
Alignment explanation
Indices: 49213520--49213681 Score: 198
Period size: 35 Copynumber: 4.6 Consensus size: 35
49213510 AATACTCAAG
*
49213520 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * **
49213555 GTACAATATATCATCATATATGACTGAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * * *
49213590 GTTCAATATAACATCACATGTAGTCAAATATTCAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * *
49213625 GTTTAATATAACATCACATGTGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
49213660 GTTCAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
49213682 TACATAACTA
Statistics
Matches: 104, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 104 1.00
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.31
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGGCCAAATATACAA
Found at i:49216138 original size:18 final size:18
Alignment explanation
Indices: 49216101--49216138 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
49216091 TAAATGATGA
49216101 ATTTAAAGTATTAGTTGTT
1 ATTTAAAGTATTA-TTGTT
49216120 ATTTATAAGTATT-TTGTT
1 ATTTA-AAGTATTATTGTT
49216138 A
1 A
49216139 AGTGATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (18 bp):
ATTTAAAGTATTATTGTT
Found at i:49217792 original size:15 final size:15
Alignment explanation
Indices: 49217772--49217802 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
49217762 AATTATGAAA
49217772 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
49217787 GATATGTTTTGTATT
1 GATATGTTTTGGATT
49217802 G
1 G
49217803 TAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:49221811 original size:27 final size:28
Alignment explanation
Indices: 49221774--49221886 Score: 135
Period size: 27 Copynumber: 4.2 Consensus size: 28
49221764 AGCATGGCTG
* *
49221774 CCAGA-ACAGATA-TTGTGATAGAGTCA
1 CCAGATACAGATATTTGTGACAGAGCCA
*
49221800 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGACAGAGCCA
* * * *
49221827 CCAGAAACATATATTTTTGGCAGAGCCA
1 CCAGATACAGATATTTGTGACAGAGCCA
49221855 CCAGAT-CAGATATTTGTGACAGAGCCA
1 CCAGATACAGATATTTGTGACAGAGCCA
49221882 CCAGA
1 CCAGA
49221887 ACACTCCCTC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 52 0.69
28 18 0.24
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGACAGAGCCA
Found at i:49222313 original size:8 final size:8
Alignment explanation
Indices: 49222296--49222334 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
49222286 ACAAAATGTT
49222296 GGCTTTTC
1 GGCTTTTC
*
49222304 GGCATTTC
1 GGCTTTTC
49222312 GGCTTTTC
1 GGCTTTTC
49222320 GGCTTTTC
1 GGCTTTTC
49222328 GGCTTTT
1 GGCTTTT
49222335 GCCGATCTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.49
Consensus pattern (8 bp):
GGCTTTTC
Found at i:49225626 original size:27 final size:28
Alignment explanation
Indices: 49225596--49225663 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 28
49225586 ATATTGTGAA
*
49225596 AGAGTCACCAGATACAGATA-TTATGGC
1 AGAGTCACCAGAAACAGATATTTATGGC
* * *
49225623 AGAGTCACTAGAAACAGCTATTTGTGGC
1 AGAGTCACCAGAAACAGATATTTATGGC
*
49225651 AGAGCCACCAGAA
1 AGAGTCACCAGAA
49225664 CACTTCCTCC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
27 17 0.50
28 17 0.50
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (28 bp):
AGAGTCACCAGAAACAGATATTTATGGC
Found at i:49230946 original size:35 final size:35
Alignment explanation
Indices: 49230878--49231057 Score: 191
Period size: 35 Copynumber: 5.1 Consensus size: 35
49230868 TACTTACTTG
*
49230878 TATGGCCAAATACT-CAATGTTCATTATATCATCACA
1 TATGGCCAAATA-TACAA-GTTCAATATATCATCACA
* * *
49230914 TATGGCCAAAAATACAAGTACAATATATCATCATA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * *
49230949 TATGACCGAATATACAAGCTCAATATAACATCAAA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * * *
49230984 TGTAGTCAAATATTCAAGTTTAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
*
49231019 TGTGGCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
49231054 TATG
1 TATG
49231058 TACATACCAA
Statistics
Matches: 117, Mismatches: 26, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
35 103 0.88
36 14 0.12
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.29
Consensus pattern (35 bp):
TATGGCCAAATATACAAGTTCAATATATCATCACA
Found at i:49238184 original size:35 final size:35
Alignment explanation
Indices: 49238139--49238300 Score: 198
Period size: 35 Copynumber: 4.6 Consensus size: 35
49238129 AATACTCAAG
*
49238139 GTTCATTATATCATCACATATGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * **
49238174 GTACAATATATCATCATATATGACTGAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * * * *
49238209 GTTCAATATAACATCACATGTAGTCAAATATTCAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
* * *
49238244 GTTTAATATAACATCACATGTGGCCAAATATACAA
1 GTTCAATATATCATCACATATGGCCAAATATACAA
49238279 GTTCAATATATCATCACATATG
1 GTTCAATATATCATCACATATG
49238301 TACATAACTA
Statistics
Matches: 104, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 104 1.00
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.31
Consensus pattern (35 bp):
GTTCAATATATCATCACATATGGCCAAATATACAA
Found at i:49240761 original size:18 final size:18
Alignment explanation
Indices: 49240724--49240761 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
49240714 TAAATGATGA
49240724 ATTTAAAGTATTAGTTGTT
1 ATTTAAAGTATTA-TTGTT
49240743 ATTTATAAGTATT-TTGTT
1 ATTTA-AAGTATTATTGTT
49240761 A
1 A
49240762 AGTGATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (18 bp):
ATTTAAAGTATTATTGTT
Found at i:49242412 original size:15 final size:15
Alignment explanation
Indices: 49242392--49242422 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
49242382 AATTATGAAA
49242392 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
49242407 GATATGTTTTGTATT
1 GATATGTTTTGGATT
49242422 G
1 G
49242423 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:49244804 original size:27 final size:27
Alignment explanation
Indices: 49244781--49244915 Score: 171
Period size: 27 Copynumber: 5.0 Consensus size: 27
49244771 AAAAATTATT
*
49244781 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
49244808 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
49244835 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
49244862 GAAATACCCCTATAGGGTAGAATTATC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * * *
49244889 GAGATACCCTTATGGGGTAAAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
49244916 ATTTTGCCCT
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:49244832 original size:54 final size:54
Alignment explanation
Indices: 49244774--49244916 Score: 196
Period size: 54 Copynumber: 2.6 Consensus size: 54
49244764 CGATTTAAAA
* * *
49244774 AATTATTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * *
49244828 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * * *
49244882 AATTATCGAGATACCCTTATGGGGTAAAATTACCA
1 AATTATCGAAATACCCTTGTAGGGTAGAATTACCA
49244917 TTTTGCCCTT
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTATCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
Found at i:49244925 original size:27 final size:28
Alignment explanation
Indices: 49244895--49244958 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
49244885 TATCGAGATA
*
49244895 CCCTTATGGG-GTAAAATTACCATTTTG
1 CCCTTATGGGTGTAAAATGACCATTTTG
* **
49244922 CCCTTA-GGGTGTTAAATGACTGTTTTG
1 CCCTTATGGGTGTAAAATGACCATTTTG
*
49244949 CCCTTGTGGG
1 CCCTTATGGG
49244959 CAAGTGATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.10
27 24 0.80
28 3 0.10
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (28 bp):
CCCTTATGGGTGTAAAATGACCATTTTG
Done.